<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 11:54:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478117" ref_strand="+" ref_description="SGN-E478117 [cSTD-3-A4]">
      <seq>cagagaagcaaaaagggagagaatagaggaaaatctgtgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggggactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgcagagctttcattgaaagcatatcagtcagctacaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13249" stop="11164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12949" g_stop="12788" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="465" r_length="307" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="553" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E478117" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12949" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGCAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>CAGAGAAGCAAAAAGGGAGAGAATAGAGGAAAA----TCTGTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCAGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454072" ref_strand="+" ref_description="SGN-E454072 [cSTS-22-E23]">
      <seq>caaaaagggagagaatagagcaaactctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaatctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcgtgcactgcaggcgaatcaactgtgttttaccacaagatgaagggggactattatcgttatcttgcagaatttaaagctggggtatgacagaaggaggttgcagagctttcgttgaaagcatatcagtcagcgacaactgctgcagaggcagaattaccacccactcatccaattcgtttgggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13241" stop="11210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12941" g_stop="12788" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="457" r_length="307" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="0.96"/>
            <acceptor a_prob="0.673" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="545" r_length="88" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E454072" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12941" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCT-GGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>CAAAAAGGGAGAGAATAGAGC-AAA---CTCTCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAATCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCGTGCACTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGGGTATGAC-AGAAGGAGGTTGCAGAGCTTTCGTTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405202" ref_strand="+" ref_description="SGN-E405202 [PPC-16-P22]">
      <seq>caaaaagggagagaatagagcaaactctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcgtgcactgcaagcgaatcaactgtgttttaccacaagatgaagggggactattatcgttatcttgcagaatttaaagctgggtatgacaagaaagaggttgcagagctttcgttgaaagcatatcagtcagcgactactgctgcagaggcagaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13241" stop="11164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12941" g_stop="12788" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="457" r_length="307" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="0.94"/>
            <acceptor a_prob="0.673" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="545" r_length="88" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E405202" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12941" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>CAAAAAGGGAGAGAATAGAGC-AAA---CTCTCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCGTGCACTGCAAGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGGTATGACAAGAAAGAGGTTGCAGAGCTTTCGTTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316805" ref_strand="+" ref_description="SGN-E316805 [cTOB-6-E9]">
      <seq>aaaaagggagagaatagagcaaaatttctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcatatcaggcagctacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13240" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12940" g_stop="12788" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="460" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="548" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E316805" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12940" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>AAAAAGGGAGAGAATAGAGCAAAATTTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245488" ref_strand="+" ref_description="SGN-E245488 [cLEF-43-D19]">
      <seq>aaaaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcatatcaggcagctacaactgctgcggaggcggaattagcacccactcatcccattcgtctgggactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13240" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12940" g_stop="12788" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="460" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="548" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E245488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12940" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>AAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328225" ref_strand="+" ref_description="SGN-E328225 [cTOC-21-O22]">
      <seq>aaaagggagagaatagagcaaaatctctctctgttttcacttaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaagaggttgctgagctttcattgaaagcatatcaggcagctacaactgctgcggaggcggaattagcacccactcatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13239" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12939" g_stop="12788" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="458" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="546" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E328225" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12939" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACT-TAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAAGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729005" ref_strand="+" ref_description="SGN-E729005 [LA19CF10]">
      <seq>aaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcatatcaggcagctacaactgctgcggaggcggaattagcacccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13238" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12938" g_stop="12788" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="458" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="546" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E729005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12938" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485863" ref_strand="+" ref_description="SGN-E485863 [cSTE-19-J12]">
      <seq>gagaatagagcaaaatctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctatgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggggactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaagttgcagagctttcattgaaagcatatcagtcagctacaactgctgcggaggcggaattaccacccactcatcccattcgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13231" stop="11164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12931" g_stop="12788" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="447" r_length="307" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="535" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E485863" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12931" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>GAGAATAGAGCAAAATC----TCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTATGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAAGTTGCAGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248839" ref_strand="+" ref_description="SGN-E248839 [cLEF-49-I9]">
      <seq>gaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcatatcaagcagctacaactgctgcggaggcggaattagcacccactcatcccattcgtctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13229" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12929" g_stop="12788" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="449" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="537" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E248839" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12929" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>GAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456723" ref_strand="+" ref_description="SGN-E456723 [cSTS-30-I8]">
      <seq>gaggaaaatctgtgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggggactattatcgttatcttgcagaatttaaagctgggcatgacaagaaggaggttgcagagctttcattgaaagcatatcagtcagctacaactgctgcggaggcggaattacacccactcatcccattcgtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13212" stop="11164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12924" g_stop="12788" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="440" r_length="307" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="528" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E456723" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12924" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>GAGGAAAA--TC--TGTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGGCATGACAAGAAGGAGGTTGCAGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255395" ref_strand="+" ref_description="SGN-E255395 [cLEG-30-N9]">
      <seq>aaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcatatcaggcagctacaactgctgcggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13220" stop="11161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12920" g_stop="12788" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="440" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11464" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="528" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E255395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12920" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</genome_strand>
        <mrna_strand>AAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240064" ref_strand="+" ref_description="SGN-E240064 [cLED-32-D20]">
      <seq>gagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaagaggttgctgagctttcattgaaagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13231" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12931" g_stop="12788" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="451" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11468" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="535" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E240064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12931" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATA</genome_strand>
        <mrna_strand>GAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAAGAGGTTGCTGAGCTTTCATTGAAAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269402" ref_strand="+" ref_description="SGN-E269402 [cLEM-2-E5]">
      <seq>agagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13171" stop="11168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12871" g_stop="12788" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="391" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11468" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="475" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E269402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12871" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATA</genome_strand>
        <mrna_strand>AGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233272" ref_strand="+" ref_description="SGN-E233272 [cLED-6-L11]">
      <seq>gagaaagcacattcacacagaaccagagaagcaaaaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13272" stop="11172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12972" g_stop="12788" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="492" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11472" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="572" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E233272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12972" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCACATTCACACAGAACCAGAGAAGCAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAG</genome_strand>
        <mrna_strand>GAGAAAGCACATTCACACAGAACCAGAGAAGCAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248884" ref_strand="+" ref_description="SGN-E248884 [cLEF-49-I18]">
      <seq>atagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctaccgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttcattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13227" stop="11173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12927" g_stop="12788" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="448" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11473" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="527" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E248884" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12927" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTA-CGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAA</genome_strand>
        <mrna_strand>ATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACCGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327088" ref_strand="+" ref_description="SGN-E327088 [cTOC-18-H6]">
      <seq>aaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgacaagaaggaggttgctgagctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13238" stop="11179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12938" g_stop="12788" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="458" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11479" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="531" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E327088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12938" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCA</genome_strand>
        <mrna_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325061" ref_strand="+" ref_description="SGN-E325061 [cTOC-13-N19]">
      <seq>ggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaagtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaagcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="12187" stop="11202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11887" g_stop="11658" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="0.98"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11551" g_stop="11502" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="280" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E325061" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11887" e_stop="11658"/>
          <exon e_start="11551" e_stop="11502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACA</genome_strand>
        <mrna_strand>GGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAAGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAAGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249423" ref_strand="+" ref_description="SGN-E249423 [cLEF-50-P21]">
      <seq>tgtattaatgatttttaaaaaatgaattctgaattaatatgttagcaaatgttttttatctgcttggaagttctacacagattaccttttattgatttgtttggtttaatctatgagaaatgtaactaggtttcatattttatgtaattggttgagattttaaggaattgtgagttgtggtacagaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="12449" stop="11203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12149" g_stop="11658" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11551" g_stop="11503" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="541" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E249423" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12149" e_stop="11658"/>
          <exon e_start="11551" e_stop="11503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGAC</genome_strand>
        <mrna_strand>TGTATTAATGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296825" ref_strand="+" ref_description="SGN-E296825 [cLET-26-J21]">
      <seq>aagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13237" stop="11204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12937" g_stop="12788" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="457" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11504" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="505" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E296825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12937" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGA</genome_strand>
        <mrna_strand>AAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249411" ref_strand="+" ref_description="SGN-E249411 [cLEF-50-L21]">
      <seq>tgtattaaggatttttaaaaaatgaattctgaattaatatgttagcaaatgttttttatctgcttggaagttctacacagattaccttttattgatttgtttggtttaatctatgagaaatgtaactaggtttcatattttatgtaattggttgagaatttaaggaattgtgagttgtggtacagaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="12449" stop="11204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12149" g_stop="11658" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11551" g_stop="11504" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="540" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E249411" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12149" e_stop="11658"/>
          <exon e_start="11551" e_stop="11504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGA</genome_strand>
        <mrna_strand>TGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGAATTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325219" ref_strand="+" ref_description="SGN-E325219 [cTOC-1-K11]">
      <seq>gagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13231" stop="11209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12931" g_stop="12788" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="451" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11509" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="494" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E325219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12931" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGC</genome_strand>
        <mrna_strand>GAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271978" ref_strand="+" ref_description="SGN-E271978 [cLEM-8-G22]">
      <seq>caaaaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgcagaatttaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13241" stop="11211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12941" g_stop="12788" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="461" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11511" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="502" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E271978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12941" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTG</genome_strand>
        <mrna_strand>CAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278972" ref_strand="+" ref_description="SGN-E278972 [cLER-2-J13]">
      <seq>aagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgttatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13237" stop="11225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12937" g_stop="12788" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="457" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11525" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="484" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E278972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12937" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGTTATCTTGC</genome_strand>
        <mrna_strand>AAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGTTATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207250" ref_strand="+" ref_description="SGN-E207250 [cLEC-30-L2]">
      <seq>aaaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggagtaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtctgagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaagggagactattatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13239" stop="11351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12939" g_stop="12788" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="459" r_length="307" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11533" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="478" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E207250" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12939" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATCGT</genome_strand>
        <mrna_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGTAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCTGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT..........................................................................................................GAAGGGAGACTATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483409" ref_strand="+" ref_description="SGN-E483409 [cSTE-9-C16]">
      <seq>ctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcattgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatgttatggtggtcattgatcagcatctaattccgtcgtgcactgcaggcgaatcaactgtgttctaccacaagatgaagggggactattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13211" stop="11351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12911" g_stop="12788" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11658" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="431" r_length="307" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106">
            <donor d_prob="0.734" d_score="0.94"/>
            <acceptor a_prob="0.673" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11551" g_stop="11535" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="448" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E483409" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12911" e_stop="12788"/>
          <exon e_start="11964" e_stop="11658"/>
          <exon e_start="11551" e_stop="11535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGATGTAAGGGTTCTGATTTCTGTTTGTTGTCGGTCTGAGTTATAAGTATATGTTGTTTTGGGAAGTTTAGCAAACTGGAGTTGTTAAGATGATCTGTCTCTGCTCGCAGGAAGGGAGACTATTATC</genome_strand>
        <mrna_strand>CTCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCATTGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATGTTATGGTGGTCATTGATCAGCATCTAATTCCGTCGTGCACTGCAGGCGAATCAACTGTGTTCTACCACAAGAT..........................................................................................................GAAGGGGGACTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252762" ref_strand="+" ref_description="SGN-E252762 [cLEG-16-P23]">
      <seq>gatgaaaatgtccaacatggatgttgaatgactgggaggaaaggaatcttctttctgttggttataagaatgtggtagttctagagagcatcttggagatcttgtctctattgacagaagaaaatctagaggaaacgagcaaatgtcaagcgaatcaggtacctgaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgcaggcgaatcaactgtgttttaccacaagatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="12251" stop="11354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11951" g_stop="11658" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E252762" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.061" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11951" e_stop="11658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT</genome_strand>
        <mrna_strand>GATGA-AAATGTC-C-AACATGGATGTTGAA-TGACTG-GGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTA-GTTCTA-GAGAGCATCTTGGA-GATCTTGT-CTCTATTGA-CAGAA-GAA-AATCTAGAGGAAACGAGC-AAATGTCAAGCGAATC-A-G-GTACCTG----AGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264564" ref_strand="+" ref_description="SGN-E264564 [cLEG-67-P17]">
      <seq>aaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtcggagctcaccaacatttgcaatgatattatggtggtcattgatcagcatctaattccgtcatgctctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13238" stop="11387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12938" g_stop="12788" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11687" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="429" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E264564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12938" e_stop="12788"/>
          <exon e_start="11964" e_stop="11687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCA</genome_strand>
        <mrna_strand>AAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440187" ref_strand="+" ref_description="SGN-E440187 [cSTA-15-H16]">
      <seq>agagaatagaggaaactctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaatgagcaaaatgtcaagcgaatcaaggagtacctgcaaaaggtggagtctgagctcaccaacatttgcaatgatattatggtggtcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13213" stop="11413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12932" g_stop="12788" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11713" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="393" r_length="252" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E440187" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12932" e_stop="12788"/>
          <exon e_start="11964" e_stop="11713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATC</genome_strand>
        <mrna_strand>AGAGAATAGAG-GAAA---CTCTCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAATGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCTGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280452" ref_strand="+" ref_description="SGN-E280452 [cLER-1-N8]">
      <seq>agagaatagagcaaattctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgcgagaacttcgcctacgtcgctaacctcgatgctactgccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgaggaggaaaggaatcttctttctgatggatataacgaatgtggagagatctaggagagcatcttggaggatcttgtnctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgccaaaggtggagtcggagctcaccaacatttgcaatgatattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13232" stop="11426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12932" g_stop="12788" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11726" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="385" r_length="240" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E280452" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12932" e_stop="12788"/>
          <exon e_start="11964" e_stop="11726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAA-GAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATG</genome_strand>
        <mrna_strand>AGAGAATAGAGCAAATTCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGCGAGAACTTCGCCTACGTCGCTAACCTCGATGCTACTGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGAGGAGGAAAGGAATCTTCTTTCTGATGGATATAACGAATGTGGAGAGATCTAGGAGAGCATCTTGGAGGATCTTGTNCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCCAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275703" ref_strand="+" ref_description="SGN-E275703 [cLEN-18-P13]">
      <seq>aaaaagggagagaatagagcaaaatctctctctgttttcactacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcgatgaaaaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaggagagcatcttggaggatcttgtcctctattgagcagaaggaagaatctagaggaaacgagcaaaatgtcaagcgaatcaaggagtacctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13240" stop="11469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12940" g_stop="12788" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11769" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E275703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12940" e_stop="12788"/>
          <exon e_start="11964" e_stop="11769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCA</genome_strand>
        <mrna_strand>AAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445017" ref_strand="+" ref_description="SGN-E445017 [cSTA-44-O20]">
      <seq>gaatagaggaaactctctgtcttcagtacaaaaaatctttgatttcaatttgagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctcgctgagcaagccgaacgctacgatgaaatggttgaagcaatgaagaatgtcgcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctgttggttataagaatgtggtaggttctaagagagcatcttggaggatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13213" stop="11539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12929" g_stop="12788" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11839" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="264" r_length="126" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E445017" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12929" e_stop="12788"/>
          <exon e_start="11964" e_stop="11839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGT</genome_strand>
        <mrna_strand>GAATAGAG-GAAA-CT--CTCTGTCTTCAGTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCAATGAAGAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAAGAGAGCATCTTGGAGGATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245041" ref_strand="+" ref_description="SGN-E245041 [cLEF-13-G2]">
      <seq>aaaagggagagaatagagcaaaatctctctgtgttttcactacggaaaatctttgatttcaattggagagagatcggaaatggcttcttccaaagaacgtgagaacttcgtctacgtcgctaagctccctgagcaggccgaacgctgcgatgaaatggttgaagcgatgaaaaatgtctcaaacatggatgttgaattgactgtggaggaaaggaatcttctttctggtggttataagaatgtggtaggttctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="13239" stop="11561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12939" g_stop="12788" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11964" g_stop="11861" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="256" r_length="104" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E245041" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12939" e_stop="12788"/>
          <exon e_start="11964" e_stop="11861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATGGTTAGGGTTTCTACTTTTTACTGTGTGTAGATCTGTTAGTGTTTATGTTCCTTTTGAGTATATGCTTTAATTTGATGTATTTGTTATGTGATTACTCAGAAAAGGTTCGGAAATGGAACTGTTAGTTATGTTTTTGTTGCTCAGAATGTAAAATTTTACTGAAATGCTGAGCTTGTTGCTTTCGATGTTTTGAAGTTTTATATATTCGTAAATGGACTTAGGTCAGCCTGGATTAAGTTTTGTTGATCCGTTTTGGTTAAATGCAGTTAGGCTCTAGTTATTTTATGTAGGTTGTAGGTCTTTAGTACAGAGATGGTTGATCCGATTGGAGGTTGAGTTACTCATAAGTCGATTTTATTGAGATGCAACAATTGGTGCTTTTGAAGTTTCATATATCAGCAAACGGACTTAGGTCAGAAGTTGAGCGCACATAAACTTTTGTTGATCCACTTCGGTTAAATGCAATAAAAGTTCTTTTAGTCTCTGATTGTTTTATGTTGGTTGTAGGAATTTAGTACCTTTAAGGATTTGTACGGATAGGGTTGATGCGCCTGAAGAATTTTGAATTATTCATAAATGGATATTTAGTTACTTGGAATTTGAGATTTCGTTGATATGATACAGATTGGCACTTTTGATGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGG</genome_strand>
        <mrna_strand>AAAAGGGAGAGAATAGAGCAAAATCTCTCTGTGTTTTCACTACGGAAAATCTTTGATTTCAATTGGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCCCTGAGCAGGCCGAACGCTGCGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGAAGCGATGAAAAATGTCTCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGGTGGTTATAAGAATGTGGTAGGTTCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251741" ref_strand="+" ref_description="SGN-E251741 [cLEG-15-B21]">
      <seq>ggatcccccgggctgcaggctgcaatacagctaagccgtccattactaaagagttctggatgtgtgaccattggatctaaccataagctaatctataggtcctttgacagcacaaccattgttgaacaagcgatatttcatcaacgagctcttagatgttggcacaacggcttgttcagcaatgattctgctgccaagtgaactttggatgacactggctcaacactcttaagttcatcccatcagctatcacagagtttttattccactgatatgcctttcatgcctgctgcacccagaacattgttgctctaacacagagaagagctttcttactctttcctattcgttttttctttcaatttccattttttttgtcaaatttggttttttcttctcagattgctcagctgaagtagtgctcttaacaaaagaaatgcaaaacaaatattggttcttaataggaaaagcaagttaaaacttatatttttagttttacaggtgaaaaccaaattaaaccgatcccagatgctgttcatgacgaatcactttgtctggttgatagtaactataatcaaagtaaacctattgagatttggatgatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="20411" stop="24291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20712" g_stop="20742" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="51" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20743" i_stop="21979" i_length="1237">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21980" g_stop="22161" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="233" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22162" i_stop="22343" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22344" g_stop="22603" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="493" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22604" i_stop="22736" i_length="133">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22737" g_stop="22785" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="542" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22786" i_stop="23951" i_length="1166">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23952" g_stop="24018" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="609" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E251741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20712" e_stop="20742"/>
          <exon e_start="21980" e_stop="22161"/>
          <exon e_start="22344" e_stop="22603"/>
          <exon e_start="22737" e_stop="22785"/>
          <exon e_start="23952" e_stop="24018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATACAGCTAAGCCGTCCATTACTAAAGGTTTGTTTTACATTGTGTTTGTATTGTTGTATCGTATATTCAATGTTTATTTTGATTGTTAACTAAAATATATTATATTCTGTCATTACGTAACAGTGAAAAGCGCCCTTTTATTTAATGTTGTAATCGTGTCGTTACCTTATTTCTCTTTCAAATTATGTCCTTACTTAATATTTCATAATTCTATTCTACGCTTTACCCTATATTATTTAACTCCACCGAAATACCCATACCCTACGTTTTTACTTTTTTTCTTTCTTTATAGTCAACTATTTTATTTGCTCATACAGGTACTTTTTTTGTCCATAACCATATTCTGAAGTTACTATTCTGCTTTAACTATATCTCAGTTTATAGAGAACCTTTTTTGCATTTCCTTATTTGCATCACTATATTTATTAAGAACTTTAACACGCAAACAATAATATAGATGCTAAGAGAGCCTGGGCCAATTAATAATTTAATAACATGACTGGTTGAAAAATACTTTGTTTCAAGTTCTGGACCATATATGATATACTTGATCCAAAAGAAAAGAATCTTTTCATTTTTCAAATTCTTTTTGATGATAATTGTGTTCGAGTAGCGTATTTCGTTTTTTTTTTGTGAAGTGGAGCTTCTATGTAGCATGTGATATTTAGTAGTTTATGTCGATACAGTGTAGGCAAGGGAAGTCGGCAAAAAAATTAGCAGAAACACGATGTCTTAATTTTTATTTTTTTAAATTGGTGATAAATTTAATGCATACAATAGTTTAGGCTATTTTAGTAAACTTACCAGTTATAATACAACACAAAGTCAAACCAAATGTGAAAAATATCATTAAACAACAACAAACGATACAATTGTCTCATGTTTAATTATAACCATCATGCGTTCTCATTCTTTCACTCCTTGCACCTTTTAGAGTATCTAAATTTTGTTGTGCAAAATGATTTGAATACGAGCCTTTTGGATTTTGTTGTGCCATTCATATGGTTAAGATAATTTGACACCGCATGCCAAATATAGCACTATTAATCAAATTAGAGTTCAGTAACTTATTCTCGTTGTACGTCCTCAAATCACAGCCTTGACTCCACATAAACTGAATGGCTTTGAGACTGTCATTGGTCATTTCATACATCAGTGTTTTGTCGCTTCATATCGCTACTTATCTTACTGGCAGTATTTTCCTCCATTGGACATAATCTACGTATCTAATTATTAACCAACTGATTTATCTTATTCTCTTCAGAGTTCTGGATGTGTGACCATTGGATCTAACCATAAGCTAATCTATAGGTCCTTTGACAGCACAACCATTGTTGAACAAGCGATATTTCATCAACGAGCTCTTAGATGTTGGCACAACGGCTTGTTCAGCAATGATTCTGCTGCCAAGTGAACTTTGGATGACACTGGCTCAACACTCTTAAGGTATGTGAGCCTGTTTTGCTTATTCTGATATTTGCAGATTTTTCCTGTCGGAGGAGAGGGAGTCTTAAAAGATGATTTTGGTCTTTCTACTTGTAGCCGACGTATAATAAATGAAACTTGATGTTACAACCAAGGGCAATATTGATATTTCCTTTTGACATATTTTTCTTTGCTTATTTCAGTTCATCCCATCAGCTATCACAGAGTTTTTATTCCACTGATATGCCTTTCATGCCTGCTGCACCCAGAACATTGTTGCTCTAACACAGAGAAGAGCTTTCTTACTCTTTCCTATTCGTTTTTTCTTTCAATTTCCATTTTTTTTGTCAAATTTGGTTTTTTCTTCTCAGATTGCTCAGCTGAAGTAGTGCTCTTAACAAAAGAAATGCAAAACAAATATTGGTTCTTAATAGGAAAAGCAAGTTAAAACTTATATTTTTAGGTATATTGGCTACCTAACAGTACCATAGATGTTGTCTGGGTTATTGATACAAAAGTAATAAACTATTCATGCCATTTTTTGTTACGAATATGATATACGCAACCATTTCAATTGAAGTGATTTTGCTTTTCAGTTTTACAGGTGAAAACCAAATTAAACCGATCCCAGATGCTGTTCATGACGTGAGTTGCTGCCAAATTAAATTTCAGCCATAATAATTTTATTTCATCCATTATCGTAAATATTTATTTATCTATTTGGATCCAAGACCAGCTCAACCTCTAACATATAAGTAAATTTATTTTGTAGCTACAGTTTCAGAAACCTCACGCACTTTAAAATCATATTGTTGGTACTGATGTTGATCATATAAAAAGTGTGTGGAACTGAAGAGTCTCAAATAGAGAACTAGAACTGTTTTTGTCTCTTCCCAAGTGTACCACATTGGCCTCCCAAAAGTCTTTTGTGTGTTCAAAGTGACCACTGAACATCTCACAAATAAAACGTAGAAGAAAAGAAATAGTACTTCTTAACCACTTGAAGAAAAAAAATGTCAGATTATTTGCCACAAGAATTGATGATTGACATCTTCATAAAACTACCAATCAAGTCAATCCTTCTATCTAGAAGTGTTTGCAAGTCATGATTCTCTCTTCTTACTAGCCCCAATTATATCTCCACACACCTTAACCAAAACCAANACATGAATCACATCATAATGCAATATGACTCTAAAAATCCAGAAGAAAAAATATATGCTTTGTTCCATGACAATGAGAATTTGGATCAATGTCTACTTTGATTTGCCATTTGAGTGGACTAGCACTTACCTTAATATTGCAGGTAGTTGTAATGGAATTTTGTGTCTGGTGGACGATAACCGGAGTTACCCGAATCATTTCTATCTTTGGAACCCATCCATTAGAAAATTTGTTAATCTCCCAACACCAATGTATACATTTGAGACATGTAGTATCTGTGCTCATGTACAGGGGTTTGGATTTGATTGTGTTACTAATGACTACAAGGTGGTAAGAATAGTAGACACAACTTTTTGTCTTACGCCGTATATAGAGCTTTATAAGCTAAGCACTGGTGTATAGAAAGACATAAGTCATCATGTTGCTCTGTCTTATCAATTCTCTTGCTCTACACCACAGTTATATCTGAATGGCTCTTCCCATTGGATTACTTCCAAGTGGGGAAGAATTAGAAGAACCAACTCAGAGAAACACGATTGTTTTGTTTGACATGCATGATGATACATTCTTAGAAATGATGTTGCCAAGTAGTTTAACGATTGATGTACGAGTACATTTTGATGAAATGTTCCTTTTTGTGTTAACAGGAATCACTTTGTCTGGTTGATAGTAACTATAATCAAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TGCAATACAGCTAAGCCGTCCATTACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCTGGATGTGTGACCATTGGATCTAACCATAAGCTAATCTATAGGTCCTTTGACAGCACAACCATTGTTGAACAAGCGATATTTCATCAACGAGCTCTTAGATGTTGGCACAACGGCTTGTTCAGCAATGATTCTGCTGCCAAGTGAACTTTGGATGACACTGGCTCAACACTCTTAAG......................................................................................................................................................................................TTCATCCCATCAGCTATCACAGAGTTTTTATTCCACTGATATGCCTTTCATGCCTGCTGCACCCAGAACATTGTTGCTCTAACACAGAGAAGAGCTTTCTTACTCTTTCCTATTCGTTTTTTCTTTCAATTTCCATTTTTTTTGTCAAATTTGGTTTTTTCTTCTCAGATTGCTCAGCTGAAGTAGTGCTCTTAACAAAAGAAATGCAAAACAAATATTGGTTCTTAATAGGAAAAGCAAGTTAAAACTTATATTTTTAG.....................................................................................................................................TTTTACAGGTGAAAACCAAATTAAACCGATCCCAGATGCTGTTCATGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCACTTTGTCTGGTTGATAGTAACTATAATCAAAGTAAACCTATTGAGATTTGGATGATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336183" ref_strand="+" ref_description="SGN-E336183 [cTOE-10-G19]">
      <seq>aaaatcttcttgtttatcttccaaattggacctttggggcttatcacaaatccttcaataatgcttcaattcaagaagaaaattgtatcttttcttgttcagaaactttgccaataacaaaaagttttatctctgttttagtaatggaagtacctattagtagaattgaaaaaataagcaaacccagtccaagaatctctgtttggtcatcacccacaaaccgtccacctggttttgtgctgtaatttgtaagtgggtgtttttcttgctgcaaaaaagatggaatttttaagttcttttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="39085" stop="39989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39385" g_stop="39689" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E336183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39385" e_stop="39689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTCTTGTTTATCTTCCAAATTGGACCTTTGGGGCTTATCACAAATCCTTCAATAATGCTTCAATTCAAGAAGAAAATTGTATCTTTTCTTGTTCAGAAACTTTGCCAATAACAAAAAGTTTTATCTCTGTTTTAGTAATGGAAGTACCTATTAGTAGAATTGAAAAAATAAGCAAACCCAGTCCAAGAATCTCTGTTTGGTCATCACCCACAAACCGTCCACCTGGTTTTGTGCTGTAATTTGTAAGTGGGTGTTTTTCTTGCTGCAAAAAAGATGGAATTTTTAAGTTCTTTTAATGG</genome_strand>
        <mrna_strand>AAAATCTTCTTGTTTATCTTCCAAATTGGACCTTTGGGGCTTATCACAAATCCTTCAATAATGCTTCAATTCAAGAAGAAAATTGTATCTTTTCTTGTTCAGAAACTTTGCCAATAACAAAAAGTTTTATCTCTGTTTTAGTAATGGAAGTACCTATTAGTAGAATTGAAAAAATAAGCAAACCCAGTCCAAGAATCTCTGTTTGGTCATCACCCACAAACCGTCCACCTGGTTTTGTGCTGTAATTTGTAAGTGGGTGTTTTTCTTGCTGCAAAAAAGATGGAATTTTTAAGTTCTTTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295213" ref_strand="+" ref_description="SGN-E295213 [cLET-20-L16]">
      <seq>atcttcttgtttatcatctattttggacctttggggcttatcacaggggcttcaataatgcttcaattcaagaagaaaattgtatcttttcttgttcagaaactttgccaataacaaaaagttttatctctgttttagtaatggaagtacctattagtagaattgaaaaaataagcaaacccagtccaagaatctctgtttggtcatcacccacaaaccgtccacctggttttgtgctgtaatttgtaagtgggtgtttttcttgctgcaaaaaagatggaatttttaagttcttttaatgggttgaatgaggtttatggggggtttcagggtataataggaaatgggttgtcatcatcttcttcattagttttggataatgagagtggtgagcttgtgaaggcaatggtgaaaccagggggaaaaggggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="39088" stop="40121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39388" g_stop="39821" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E295213" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39388" e_stop="39821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTGTTTATCTTCCAAATTGGACCTTTGGGGCTTATCACAAATCCTTCAATAATGCTTCAATTCAAGAAGAAAATTGTATCTTTTCTTGTTCAGAAACTTTGCCAATAACAAAAAGTTTTATCTCTGTTTTAGTAATGGAAGTACCTATTAGTAGAATTGAAAAAATAAGCAAACCCAGTCCAAGAATCTCTGTTTGGTCATCACCCACAAACCGTCCACCTGGTTTTGTGCTGTAATTTGTAAGTGGGTGTTTTTCTTGCTGCAAAAAAGATGGAATTTTTAAGTTCTTTTAATGGGTTGAATGAGGTTTATGGGGGGTTTCAGGGTATAATAGGAAATGGGTTGTCATCATCTTCTTCATTAGTTTTGGATAATGAGAGTGGTGAGCTTGTGAAGGCAATGGTGAAACCAGGGGGAAAAGGGGTTAA</genome_strand>
        <mrna_strand>ATCTTCTTGTTTATCATCTATTTTGGACCTTTGGGGCTTATCACAGGGGCTTCAATAATGCTTCAATTCAAGAAGAAAATTGTATCTTTTCTTGTTCAGAAACTTTGCCAATAACAAAAAGTTTTATCTCTGTTTTAGTAATGGAAGTACCTATTAGTAGAATTGAAAAAATAAGCAAACCCAGTCCAAGAATCTCTGTTTGGTCATCACCCACAAACCGTCCACCTGGTTTTGTGCTGTAATTTGTAAGTGGGTGTTTTTCTTGCTGCAAAAAAGATGGAATTTTTAAGTTCTTTTAATGGGTTGAATGAGGTTTATGGGGGGTTTCAGGGTATAATAGGAAATGGGTTGTCATCATCTTCTTCATTAGTTTTGGATAATGAGAGTGGTGAGCTTGTGAAGGCAATGGTGAAACCAGGGGGAAAAGGGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410642" ref_strand="+" ref_description="SGN-E410642 [PPI-17-L1]">
      <seq>cttacccctctctgttaccactttcattgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaagccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttagaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaatacaatctgacatagttgttaagattgggttagggaagggttcaagctcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46633" g_stop="46992" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="446" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="512" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48454" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="544" r_length="32" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E410642" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46633" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGC</genome_strand>
        <mrna_strand>CTTA-CCC-CTCTCTGT-TACCACTTTCATT-GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAGCCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAGAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATACAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGGTTAGGGAAGGGTTCAAGCTCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563181" ref_strand="+" ref_description="SGN-E563181 [1539]">
      <seq>ttgcttatccctctctgtacactttcatttgtctgctttccacttcacaatcatgngcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcggtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="47518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46634" g_stop="46992" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47218" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="378" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E563181" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46634" e_stop="46992"/>
          <exon e_start="47195" e_stop="47218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATG-GCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTC-GTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGAT</genome_strand>
        <mrna_strand>TTGCTTATCCCTCTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGNGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721636" ref_strand="+" ref_description="SGN-E721636 [FC14CH01]">
      <seq>tccctctctctctgtaacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcaaagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcaaaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattccctccttggccatttgcagtcaatgggccttgacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46337" stop="49364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="46992" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="449" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="515" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="656" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49064" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="763" r_length="107" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E721636" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATT-CCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCC</genome_strand>
        <mrna_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAAAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAAAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720752" ref_strand="+" ref_description="SGN-E720752 [FC11DA04]">
      <seq>tccctctctctctgtaacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcaaagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46337" stop="49340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="46992" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="449" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="515" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="656" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49040" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="738" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E720752" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATT</genome_strand>
        <mrna_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAAAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486954" ref_strand="+" ref_description="SGN-E486954 [cSTE-23-D6]">
      <seq>cttatccctctctgtacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgaattctgatgctgctcaggctgataattatgagaaaagtgtctctcacatgaaagcaaacagcatacttgggctttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="49320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="46992" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="442" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="508" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="649" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49020" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="711" r_length="62" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E486954" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACA</genome_strand>
        <mrna_strand>CTTATCCCTCTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGAATTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAAGTGTCTCTCACATGAAAGCAAACAGCATACTTGGGCTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582900" ref_strand="+" ref_description="SGN-E582900 [8533]">
      <seq>cttatccctctctgtaacactctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatatgttcacagtatttgcctgatgcgttttaaaggaatcaagccacattggagttatcggctgcggttctcagaggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="48564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="46992" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="450" r_length="97" r_score="0.839"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.79"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48264" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="511" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E582900" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCA-AGTATTTGCCGGATGC-TTTCAAAGGAATCAAG-CAGATCGGAGTTATCGGCTGGGGTTCTCAG-GTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTG</genome_strand>
        <mrna_strand>CTTATCCCTCTCTGTAACACTCTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATATGTTCACAGTATTTGCCTGATGCGTTTTAAAGGAATCAAGCCACATTGGAGTTATCGGCTGCGGTTCTCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581675" ref_strand="+" ref_description="SGN-E581675 [7302]">
      <seq>cttatccctctctgtaacactctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="47056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46637" g_stop="46827" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E581675" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46637" e_stop="46827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCT</genome_strand>
        <mrna_strand>CTTATCCCTCTCTGTAACACTCTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486949" ref_strand="+" ref_description="SGN-E486949 [cSTE-23-B20]">
      <seq>ttatccctctctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgccacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="49359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46638" g_stop="46992" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="445" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="511" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="653" r_length="142" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="754" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E486949" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46638" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCG-CACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGA</genome_strand>
        <mrna_strand>TTATCCCTCTCTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481545" ref_strand="+" ref_description="SGN-E481545 [cSTD-18-H7]">
      <seq>acccctctctgttaccactttcattgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaagccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46638" g_stop="46992" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="508" r_length="65" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48454" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="540" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E481545" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46638" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGC</genome_strand>
        <mrna_strand>ACCCCTCTCTGT-TACCACTTTCA-TTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAGCCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAG-AATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576291" ref_strand="+" ref_description="SGN-E576291 [59486]">
      <seq>tatcctctctgtaacactctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccggacagctgggtttactgaacacagtgggacccttggtgacctatatgagactatctctggcagtgatctagtgctgcttttgcattctgatgctgctcacgctgataattatgagaaagtatttctcacatgaaggcaaacagcatacttgggcttcacatggatcctcctcgggcatttgcagtcaatggaccttggattccaaagaacattagtgtgatgctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46639" g_stop="46992" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="509" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="650" r_length="141" r_score="0.922"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49092" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="779" r_length="129" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E576291" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46639" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATG</genome_strand>
        <mrna_strand>TATC-CTCTCTGTAACACTCTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGGACAGCTGGGTTTACTGAACACAGTGGGACCCTTGGTGACCTATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGCATTCTGATGCTGCTCAC...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATT-TCTCACATGAAGGCAAACAGCATACTTGGGC-TTCACATGGA-TCCTCCTCGGGCATTTGCAGTCAATGGACCTTGGATT-CCAAAGAACATTAGTGTGA-TGCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590742" ref_strand="+" ref_description="SGN-E590742 [44344]">
      <seq>cttatcctctctgtacactttcatttgtctgctttccacttcacaatcatggcggcggcggcgggacttccttctccatcaccacttccactcctccttctcctcctcaacaaatcctaaaacttctcttgttggtaacttagggtttctatcctcggtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcggctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaaggattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttaatgctgccttttgatttctgatgctgctcaggctgataaattatgagcaaaagtgttctctcacatgaaagccaaacagcatactttgggctttcaccatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46341" stop="49325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46639" g_stop="46992" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="438" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="505" r_length="67" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="647" r_length="142" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49026" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="721" r_length="74" r_score="0.794"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E590742" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46639" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTC-TCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTC-GTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCT-AGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAA-GGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTG-CTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGAT-AATTATGAG--AAAGTGTTCTCTCACATG-AAGCCAAACAGCATAC-TTGGGCTTTCA-CATGGATT</genome_strand>
        <mrna_strand>CTTATCCTCTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGG-GACTTCCTTCTCCATCACCACTTCCACTCCTCC-TTCTCCT-C-C-TCA--A-C-AAAT-CCTAAAA-CTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAGG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAATGCTGCCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAAATTATGAGCAAAAGTGTTCTCTCACATGAAAGCCAAACAGCATACTTTGGGCTTTCACCATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560657" ref_strand="+" ref_description="SGN-E560657 [20344]">
      <seq>cccctctctgttaccactttcattgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaagccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46639" g_stop="46992" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="442" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="508" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="649" r_length="141" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E560657" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46639" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG</genome_strand>
        <mrna_strand>CCCCTCTCTGT-TACCACTTTCATT-GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAGCCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439872" ref_strand="+" ref_description="SGN-E439872 [cSTA-13-L22]">
      <seq>cgaggattctgtaacactctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcgaactccggcggcggtgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46640" g_stop="46992" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48256" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="496" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E439872" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46640" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGA</genome_strand>
        <mrna_strand>CGAGGATTCTGTAACACTCTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCGAACTCCGGCGGCGGTGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405709" ref_strand="+" ref_description="SGN-E405709 [PPI-1-I22]">
      <seq>ccctctctgaacactttcatttgtctgctttccacttacaatcatggcggcggcggcggcgacttccttctccataccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgccagnnttgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46342" stop="48875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46642" g_stop="46992" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="438" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="504" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="646" r_length="142" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E405709" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46642" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCG-CACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG</genome_strand>
        <mrna_strand>CCCTCTCTG-AACACTTTCATTTGTCTGCTTTCCACTT-ACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCAT-ACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCCAGNNTTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443518" ref_strand="+" ref_description="SGN-E443518 [cSTA-38-B14]">
      <seq>ccctctctgtacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46342" stop="48753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46642" g_stop="46992" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="503" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48453" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="534" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E443518" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46642" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTG</genome_strand>
        <mrna_strand>CCCTCTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585243" ref_strand="+" ref_description="SGN-E585243 [66963]">
      <seq>cctctctgtaacactctcatatgtctgctttccacttcacaatcatggcggcggcggcggtgacttccttctccatcaccacttacactcctccttcctcctcctcctcaagccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaatccgctgtgtcatctggcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaacaaggagaaagtaaccctcgctggacatgatgagtacattgtgaggggagggagagatttgtccaagtatttgcctgatgctttcaaaggaatcacgcagattggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaacataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtctactgaagagagtgggacccttggtgacgtatatgagactatctctggcagtgatctagtgctgctttcgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaaggcaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcgatggaccttgacttcccaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46344" stop="49370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46992" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="441" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="508" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="649" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49070" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="761" r_length="112" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E585243" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAA-ATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGA</genome_strand>
        <mrna_strand>CCTCTCTGTAACACTCTCATATGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGTGACTTCCTTCTCCATCACCACTTACACTCCTCCTTCCTCCTCCTCCTCA--AGCCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAATCCGCTGTGTCATCTGGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAACAAGGAGAAAGTAACCCTCGCTGGACATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTCCAAGTATTTGCCTGATGCTTTCAAAGGAATCACGCAGATTGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAACATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTCTACTGAAGAGAGTGGGACCCTTGGTGACGTATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTCGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGGCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCGATGGACCTTGACTTCCCAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477662" ref_strand="+" ref_description="SGN-E477662 [cSTD-1-I2]">
      <seq>cctctctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacgcctgggtttactgaagagaacggaacccttggtgacatatacgagactatctttggcagtgatttagtgctgcttttgatttctgatgctgctncagctgataattatgagaaagtgttctctcacatgaagcccaacagcatacttgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46992" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="440" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="506" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="647" r_length="141" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49015" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="704" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E477662" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTT</genome_strand>
        <mrna_strand>CCTCTCTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACGCCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTTTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTNCA...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCCAACAGCATACTTGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454831" ref_strand="+" ref_description="SGN-E454831 [cSTS-24-D13]">
      <seq>cctctctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctggggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46992" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="440" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="506" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="648" r_length="142" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E454831" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCT-GGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG</genome_strand>
        <mrna_strand>CCTCTCTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437908" ref_strand="+" ref_description="SGN-E437908 [cSTA-5-O24]">
      <seq>cctctctgtacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46344" stop="48559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46643" g_stop="46992" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48259" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="492" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E437908" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46643" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</genome_strand>
        <mrna_strand>CCTCTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450493" ref_strand="+" ref_description="SGN-E450493 [cSTS-9-D5]">
      <seq>ctctgttaccacctttcactgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaagccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgccagcctggggtttactgaagagagtgggaccccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46644" g_stop="46992" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="438" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="504" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="647" r_length="143" r_score="0.915"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49011" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="700" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E450493" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46644" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAG-CT-GGGTTTACTGAAGAGAAT-GGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGG</genome_strand>
        <mrna_strand>CTCTGT-TACCACCTTTCACTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAGCCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGC-CAGCCTGGGGTTTACTGAAGAGAGTGGGACCCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447646" ref_strand="+" ref_description="SGN-E447646 [cSTA-28-K1]">
      <seq>attctgtaacactctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcgaactccggcggcggtgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="47577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46645" g_stop="46992" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47277" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="428" r_length="83" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E447646" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46645" e_stop="46992"/>
          <exon e_start="47195" e_stop="47277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTG</genome_strand>
        <mrna_strand>ATTCTGTAACACTCTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCGAACTCCGGCGGCGGTGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581658" ref_strand="+" ref_description="SGN-E581658 [7285]">
      <seq>ctctgtacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatgggatcctccttgggcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46346" stop="49342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46646" g_stop="46992" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="433" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="499" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="640" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="724" r_length="84" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E581658" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46646" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTG</genome_strand>
        <mrna_strand>CTCTGT-ACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGGATCCTCCTTGGGCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443739" ref_strand="+" ref_description="SGN-E443739 [cSTA-39-L1]">
      <seq>ctctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46646" g_stop="46992" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48263" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="497" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E443739" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46646" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTT</genome_strand>
        <mrna_strand>CTCTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731332" ref_strand="+" ref_description="SGN-E731332 [LA26DC07]">
      <seq>ctgtaacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaaaaacattagtgtgattgctgtatgtcccaagggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46348" stop="49405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46992" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="438" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="504" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="645" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49105" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="792" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E731332" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATG</genome_strand>
        <mrna_strand>CTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAAAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441776" ref_strand="+" ref_description="SGN-E441776 [cSTA-31-E16]">
      <seq>ctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgccagcntggggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctncttggccatttgcagtcaatgggccttgacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46992" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="501" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="643" r_length="142" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49064" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="749" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441776" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGC-T-GGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCC</genome_strand>
        <mrna_strand>CTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGC-CAGCNTGGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTNCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441777" ref_strand="+" ref_description="SGN-E441777 [cSTA-31-E16]">
      <seq>ctgtaacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgaaggattctctctcagaaataaaatctgacatagttgttaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46992" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="501" r_length="66" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441777" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG</genome_strand>
        <mrna_strand>CTGTAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAAGGATTCTCTCTCAGAAATAAAATCTGACATAGTTGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729052" ref_strand="+" ref_description="SGN-E729052 [LA19DC10]">
      <seq>tgtaacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggacgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgcccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggagtcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46349" stop="48553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46649" g_stop="46992" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48253" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="487" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E729052" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46649" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATC</genome_strand>
        <mrna_strand>TGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGACGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGCCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAGTCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705710" ref_strand="+" ref_description="SGN-E705710 [FA27DG01]">
      <seq>gtaacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaaaggaatgtggccttcagtcaagagattatatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46350" stop="49432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46992" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="436" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="502" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="643" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49132" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="817" r_length="174" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E705710" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTT</genome_strand>
        <mrna_strand>GTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAAGGAATGTGGCCTTCAGTCAAGAGATTATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448809" ref_strand="+" ref_description="SGN-E448809 [cSTS-4-D19]">
      <seq>ttaccactttcattgtctgctttccacttacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaagccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtattttctcacatgaagccaaacagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46992" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="497" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="638" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49006" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="686" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E448809" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATA</genome_strand>
        <mrna_strand>TTACCACTTTCA-TTGTCTGCTTTCCACTT-ACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAGCCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339967" ref_strand="+" ref_description="SGN-E339967 [cTOF-3-P6]">
      <seq>taacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggccccacgccctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctncttggccatttgcagtcaatgggccttgacttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46351" stop="49365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="501" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="642" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49065" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="750" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E339967" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCAC-AGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAG-AAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCC</genome_strand>
        <mrna_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCC-CACGCCCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTNCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450111" ref_strand="+" ref_description="SGN-E450111 [cSTS-8-M10]">
      <seq>taacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="432" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="498" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="639" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49024" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="705" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E450111" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGA</genome_strand>
        <mrna_strand>TAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302966" ref_strand="+" ref_description="SGN-E302966 [cLEW-26-B6]">
      <seq>taacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46351" stop="48859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="501" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48559" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="638" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E302966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGC</genome_strand>
        <mrna_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447402" ref_strand="+" ref_description="SGN-E447402 [cSTA-26-I2]">
      <seq>taacactttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="432" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="498" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48480" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="556" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E447402" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTG</genome_strand>
        <mrna_strand>TAACACTTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710116" ref_strand="+" ref_description="SGN-E710116 [FA54BB02]">
      <seq>ccgaacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcaaagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgcgaggggaggtacagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46355" stop="48520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="435" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48220" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="452" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E710116" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCA</genome_strand>
        <mrna_strand>CCGAACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAAAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGCGAGGGGAGGTACAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281500" ref_strand="-" ref_description="SGN-E281500 [cLEL-1-O6](-)">
      <seq>gcacgagtcgatttgtctgcttttcacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacccccactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggngaggtagagatttgttcaagtatttgccggatgctttcaaaggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46358" stop="47554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46992" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47254" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E281500" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281500" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46992"/>
          <exon e_start="47195" e_stop="47254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATC</genome_strand>
        <mrna_strand>GCACGAGTCGATTTGTCTGCTTTTCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCCCCACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGNGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202970" ref_strand="+" ref_description="SGN-E202970 [cLEB-1-O21]">
      <seq>gcacgagtcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46358" stop="47110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46651" g_stop="46810" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E202970" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>160</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46651" e_stop="46810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAA</genome_strand>
        <mrna_strand>GCACGAGTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703124" ref_strand="+" ref_description="SGN-E703124 [FA20CE05]">
      <seq>aacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46352" stop="49493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46652" g_stop="46992" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="434" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="500" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="641" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="869" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49272" g_stop="49281" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="870" r_stop="879" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E703124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46652" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATG</genome_strand>
        <mrna_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737092" ref_strand="+" ref_description="SGN-E737092 [LC08BH02]">
      <seq>aactcttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggaaattatatgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46352" stop="49434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46652" g_stop="46992" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="434" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="500" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="641" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49134" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="817" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E737092" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46652" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCA</genome_strand>
        <mrna_strand>AACTCTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAAATTATATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294260" ref_strand="+" ref_description="SGN-E294260 [cLET-14-K16]">
      <seq>aacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46352" stop="48555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46652" g_stop="46992" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="434" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48255" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="486" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E294260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46652" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTG</genome_strand>
        <mrna_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297213" ref_strand="+" ref_description="SGN-E297213 [cLET-29-J20]">
      <seq>aacacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46352" stop="47299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46652" g_stop="46992" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47200" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="347" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E297213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46652" e_stop="46992"/>
          <exon e_start="47195" e_stop="47200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATT</genome_strand>
        <mrna_strand>AACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283203" ref_strand="+" ref_description="SGN-E283203 [cLER-17-B22]">
      <seq>acacttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagcttctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46353" stop="47599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46653" g_stop="46992" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="433" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E283203" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46653" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG</genome_strand>
        <mrna_strand>ACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTTCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717960" ref_strand="+" ref_description="SGN-E717960 [FC03AH12]">
      <seq>acttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46355" stop="49317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46655" g_stop="46992" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="497" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="638" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49017" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="697" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E717960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46655" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTC</genome_strand>
        <mrna_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272533" ref_strand="+" ref_description="SGN-E272533 [cLEM-21-A24]">
      <seq>acttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttaaggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46355" stop="48780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46655" g_stop="46992" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="431" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="497" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48480" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="555" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E272533" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46655" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTG</genome_strand>
        <mrna_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAAGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270834" ref_strand="+" ref_description="SGN-E270834 [cLEM-6-E20]">
      <seq>acttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46355" stop="47244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46655" g_stop="46944" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E270834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46655" e_stop="46944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAA</genome_strand>
        <mrna_strand>ACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701937" ref_strand="+" ref_description="SGN-E701937 [FA17BD11]">
      <seq>cttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattattcaagttttgcagttcaccaggatattgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46356" stop="49493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46656" g_stop="46992" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="430" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="496" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="637" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="864" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49272" g_stop="49283" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="865" r_stop="876" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E701937" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46656" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGA</genome_strand>
        <mrna_strand>CTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATT-ATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423510" ref_strand="+" ref_description="SGN-E423510 [STM-42-K9]">
      <seq>tttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccnttggcatttgcagtcaatggggcttgacttccaaagaacattagtgtgattgctgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46852" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46853" i_stop="46978" i_length="126">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46979" g_stop="46992" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="207" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="366" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="507" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48959" g_stop="49094" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="642" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E423510" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46852"/>
          <exon e_start="46979" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTC</genome_strand>
        <mrna_strand>TTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCAT..............................................................................................................................CTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCNTTGGCATTTGCAGTCAATGGGGCTTGACTT-CCAAAGAACATTAGTGTGATTGCTGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328497" ref_strand="+" ref_description="SGN-E328497 [cTOC-23-I13]">
      <seq>ttcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46357" stop="49351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46992" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="429" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="495" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="636" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49051" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="729" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E328497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATG</genome_strand>
        <mrna_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450597" ref_strand="+" ref_description="SGN-E450597 [cSTS-9-H4]">
      <seq>tttcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacgcctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46852" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46853" i_stop="46978" i_length="126">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46979" g_stop="46992" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="207" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="300" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="366" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="507" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48959" g_stop="49044" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="593" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E450597" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46852"/>
          <exon e_start="46979" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCA</genome_strand>
        <mrna_strand>TTTCATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCAT..............................................................................................................................CTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACGCCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567636" ref_strand="+" ref_description="SGN-E567636 [11794]">
      <seq>ctcatttgtctgctttccacttcacaatcatggcggcggcggcggcgacttccgtgtccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttatcggctggggttctcaggggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaaagctcatttgcagaggcccgcacagcgtgggtttactgaagagagtgggacccctttgtgacatatatgagactatctctggcagtgatctatatgctgcttttggattttctggatgctgctcagggctgataatctatgagcaaaggtatttttctcacatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46358" stop="48833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46992" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="492" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="640" r_length="148" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E567636" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCA-GGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTC-AAGCTCATTTGCGGAGGCCCGCACAGC-TGGGTTTACTGAAGAGAAT-GGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTA-GTGCTGCTTTT-GA-TTTCT-GATGCTGCTCAG</genome_strand>
        <mrna_strand>CTC-ATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCGTGTCCATCACCACTTCCACTCCTCCTTCCTCCTCCTC--C-TCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGTTCTCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAAGCTCATTTGCAGAGGCCCGCACAGCGTGGGTTTACTGAAGAGAGTGGGACCCCTTTGTGACATATATGAGACTATCTCTGGCAGTGATCTATATGCTGCTTTTGGATTTTCTGGATGCTGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446988" ref_strand="+" ref_description="SGN-E446988 [cSTA-23-N24]">
      <seq>ctcatttgtctgctttccttttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcatcaacaccatcgcttaagcctctcagagctcaagccgctgtttcatctggcagctcgaactccggcggcggtgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="48779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46992" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="425" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="491" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48479" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="548" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E446988" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACT</genome_strand>
        <mrna_strand>CTC-ATTTGTCTGCTTTCCTTTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCCTTCCTCCTCCTC--C-TCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCATCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCTGTTTCATCTGGCAGCTCGAACTCCGGCGGCGGTGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324657" ref_strand="+" ref_description="SGN-E324657 [cTOC-9-H13]">
      <seq>ttttatttgtctgcgggccacttcacaatcggggcggttgcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttaaggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctctcaaaggaatcaagcagatcggagttatcggctggggttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46374" stop="47585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46657" g_stop="46992" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47285" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E324657" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46657" e_stop="46992"/>
          <exon e_start="47195" e_stop="47285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTC</genome_strand>
        <mrna_strand>TTTTATTTGTCTGCGGGCCACTTCACAATCGGGGCGGTTGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAAGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTCTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204404" ref_strand="+" ref_description="SGN-E204404 [cLEC-13-N21]">
      <seq>tcgatttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46358" stop="48861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46658" g_stop="46992" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="428" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="494" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="633" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E204404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46658" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTC</genome_strand>
        <mrna_strand>TCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306160" ref_strand="+" ref_description="SGN-E306160 [cLEY-13-C19]">
      <seq>atttgtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgcccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46361" stop="48559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46661" g_stop="46992" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="425" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48259" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="481" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E306160" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46661" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</genome_strand>
        <mrna_strand>ATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGCCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366912" ref_strand="+" ref_description="SGN-E366912 [cLPT-6-I13]">
      <seq>gtctgctttccacttcacaatcatggcggcggcggcggcaactcccttctgcatcaccaactctactcatccggcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaaatccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacatccgtttttaagaaggagaaagttaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgcttaagtatttgccggatgctttcaaaggaatcaagcagatcggagtcatcggctggtgttctcagggacctgctcaagcccataactcgagggattctcttgcagaaataaaatctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46365" stop="48559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46665" g_stop="46992" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="421" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48259" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="477" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E366912" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46665" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</genome_strand>
        <mrna_strand>GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTCCCTTCTGCATCACCAACTCTACTCATCCGGCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAAATCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTTACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGCTTAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTCATCGGCTGGTGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCATAACTCGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334919" ref_strand="+" ref_description="SGN-E334919 [cTOE-3-P2]">
      <seq>gtctgctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46365" stop="47299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46665" g_stop="46992" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47200" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="334" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E334919" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46665" e_stop="46992"/>
          <exon e_start="47195" e_stop="47200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATT</genome_strand>
        <mrna_strand>GTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365616" ref_strand="+" ref_description="SGN-E365616 [cLPT-12-E14]">
      <seq>gctttccacttcacaatcatggcggcggcggcggcaacttccttctccatcaccaactctactcatccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaaatccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgcttgattttgaaacatccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgtttaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcaaggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46369" stop="48559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46669" g_stop="46992" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="417" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48259" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="473" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E365616" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46669" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</genome_strand>
        <mrna_strand>GCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCAACTCTACTCATCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAAATCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGCTTGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTTAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439786" ref_strand="+" ref_description="SGN-E439786 [cSTA-13-F7]">
      <seq>ttccacttcacaatcatggcggcggcggcggcgacttccttctccatcaccacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46414" stop="48754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46672" g_stop="46992" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="408" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="474" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48454" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="506" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E439786" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46672" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGC</genome_strand>
        <mrna_strand>TTCCACTTCACAATCATGGCGGCGGCGGCGGCGACTTCCTTCTCCATCACCACTTCCACTCCTCC-T--TCCT-C-C-TCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313049" ref_strand="+" ref_description="SGN-E313049 [cTOA-14-O1]">
      <seq>gcaacttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46402" stop="47579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46702" g_stop="46992" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47279" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="376" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E313049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46702" e_stop="46992"/>
          <exon e_start="47195" e_stop="47279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGG</genome_strand>
        <mrna_strand>GCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698756" ref_strand="+" ref_description="SGN-E698756 [FA07CA04]">
      <seq>ttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46407" stop="49284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46707" g_stop="46992" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="445" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="586" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="48984" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="612" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E698756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46707" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="48984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTC</genome_strand>
        <mrna_strand>TTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320242" ref_strand="+" ref_description="SGN-E320242 [cTOB-21-M6]">
      <seq>ttccttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46407" stop="47579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46707" g_stop="46992" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47279" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="371" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E320242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46707" e_stop="46992"/>
          <exon e_start="47195" e_stop="47279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGG</genome_strand>
        <mrna_strand>TTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701154" ref_strand="+" ref_description="SGN-E701154 [FA15AG02]">
      <seq>cttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46710" g_stop="46992" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="376" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="442" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="583" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="811" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E701154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46710" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG</genome_strand>
        <mrna_strand>CTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315905" ref_strand="+" ref_description="SGN-E315905 [cTOA-26-O8]">
      <seq>cttctccatcaccacctctactcctccgtcctcctccgcatcatcaaccaaatccctaaaaccttcgcttgttggtaacttagggtttctatcctcgtcaactccatcgcttaagcctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46410" stop="49419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46710" g_stop="46992" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="376" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="442" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="583" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49119" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="744" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E315905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46710" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAG</genome_strand>
        <mrna_strand>CTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485006" ref_strand="+" ref_description="SGN-E485006 [cSTE-16-M19]">
      <seq>accacttccactcctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctncttggccatttgcagtcaatgggccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46427" stop="49359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46723" g_stop="46992" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="360" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="426" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="567" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49059" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="668" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E485006" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46723" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGA</genome_strand>
        <mrna_strand>ACCACTTCCACTCC-TCCT--TCCTCCTCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTNCTTGGCCATTTGCAGTCAATGGGCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441419" ref_strand="+" ref_description="SGN-E441419 [cSTA-30-G14]">
      <seq>ctccttcctcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46438" stop="49327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46736" g_stop="46992" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="350" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="416" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="557" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49027" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="626" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441419" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46736" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTC</genome_strand>
        <mrna_strand>CTCCTTCCTCCTCCTCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604390" ref_strand="+" ref_description="SGN-E604390 [74525]">
      <seq>ctccttcctcctcctcaaccaaatccctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgtcgtttcatctggcagctcaaactccggcggcggcgcgcttgctggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattccctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgcttgtatgtcccaagggaaatggggccctcagtcaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46440" stop="49424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46740" g_stop="46992" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="348" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="414" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="555" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49124" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="723" r_length="168" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E604390" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46740" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCC-TCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGC-GGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGC-TGTATGTCCCAAGGG-AATGGGGCCTTCAGTCAGGAGAT</genome_strand>
        <mrna_strand>CTCCTTCCTCCTCCTCAACCAAATCCCTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGTCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCTGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTTGTATGTCCCAAGGGAAATGGGGCCCTCAGTCAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418203" ref_strand="+" ref_description="SGN-E418203 [STM-27-G3]">
      <seq>ctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46465" stop="49316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46765" g_stop="46992" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="321" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="387" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="528" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49016" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="586" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E418203" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46765" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTT</genome_strand>
        <mrna_strand>CTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441151" ref_strand="+" ref_description="SGN-E441151 [cSTA-29-I8]">
      <seq>ctaaaaccttctcttgttggtaacttagggtttctatcctcgtcaacaccatcgcttaagcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46465" stop="49291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46765" g_stop="46992" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="321" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="387" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="528" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="48991" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="561" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441151" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46765" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="48991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATG</genome_strand>
        <mrna_strand>CTAAAACCTTCTCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560801" ref_strand="+" ref_description="SGN-E560801 [20512]">
      <seq>atcctcgtcacaccatcgcttaagcctctcagagctcaagccgccatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaaacatttagtgtgaattgcttgttatgtcccaaggcgaatgggttcccttcagtcagggagattatatgttcaaggaaaagaagttaatggtgctggaatttaatttcaaggtttttgcaagttcaccaggattattgatggaagaagccacagattgtttgtctaagggtggtctgttgcccctttggtttctcccctttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46500" stop="49638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46800" g_stop="46992" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="285" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="351" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="492" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="734" r_length="242" r_score="0.851"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.76"/>
            <acceptor a_prob="0.987" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49272" g_stop="49323" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="790" r_length="56" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E560801" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46800" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAG-AACA-TTAGTGTG-ATTGC-TG-TATGTCCCAAGG-GAATGGG--GCCTTCAGTCA-GGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAA-TTAA-TTCAA-G-TTTTGC-AGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGA-TATTGATGGAAG-AGCCACAGA-TGTTGCTCT-TGGGTGGTCTGTTGCCCTTG</genome_strand>
        <mrna_strand>ATCCTCGTC-ACACCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAAACATTTAGTGTGAATTGCTTGTTATGTCCCAAGGCGAATGGGTTCCCTTCAGTCAGGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTTAATTTCAAGGTTTTTGCAAGTTCACCAG.....................................................................................GATTATTGATGGAAGAAGCCACAGATTGTTTGTCTAAGGGTGGTCTGTTGCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303341" ref_strand="+" ref_description="SGN-E303341 [cLEX-2-E22]">
      <seq>tcgcttaagcctctcagagctcaagccgccgattcatctagcagctcaaactccagcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgacaaagctcctgcttcgtttgattttgaaacgtccctcctttagaaggagaaagtaaccctatctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcatggacctgctcaagcccagaacttgcaggattctcttgcagaaataaaatctgacataggtgttaacattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46516" stop="48795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46816" g_stop="46992" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.90"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="270" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="336" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48495" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="409" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E303341" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46816" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCC</genome_strand>
        <mrna_strand>TCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGATTCATCTAGCAGCTCAAACTCCAGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGACAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCCTCCTTTAGAAGGAGAAAGTAACCCTATCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGCAGGATTCTCTTGCAGAAATAAAATCTGACATAGGTGTTAAC.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441340" ref_strand="+" ref_description="SGN-E441340 [cSTA-30-E23]">
      <seq>gcctctcagagctcaagccgccgtttcatctggcagctcaaactccggcggcggcgcgcttgcggttcgcatggtcgccgcacctgctaccgtcaaggctcctgcttcgttcgattttgaaacatccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgctttcaaaggaatcaagcagattggagttatcggctgggggtctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcangctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46524" stop="49362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46824" g_stop="46992" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="262" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="328" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="469" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49062" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="573" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441340" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46824" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTT</genome_strand>
        <mrna_strand>GCCTCTCAGAGCTCAAGCCGCCGTTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGTTCGCATGGTCGCCGCACCTGCTACCGTCAAGGCTCCTGCTTCGTTCGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTCAAAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAN...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297910" ref_strand="+" ref_description="SGN-E297910 [cLET-38-K22]">
      <seq>cctctcagagctcaagccgccgtttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46525" stop="49399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46825" g_stop="46992" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="261" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="327" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="468" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49099" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="609" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E297910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46825" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAG</genome_strand>
        <mrna_strand>CCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581872" ref_strand="+" ref_description="SGN-E581872 [7503]">
      <seq>cggctgcaggaatcggcacgaggagagctcaagccggcatttcatctggcagctcaaactccggcggcggcgcgcttgcggctcggcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggcacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctgggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagcaaagtattttctcacatgaagccaaacagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46531" stop="49306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46833" g_stop="46992" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="186" r_length="161" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="279" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="346" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="488" r_length="142" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49006" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="537" r_length="49" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E581872" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46833" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTC-GCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGG-ACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCT-GGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAG-AAAGTGTTCTCTCACATGAAGCCAAACAGCATA</genome_strand>
        <mrna_strand>AGCTCAAGCCGGCATTTCATCTGGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGCAAAGTATTTTCTCACATGAAGCCAAACAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365316" ref_strand="+" ref_description="SGN-E365316 [cLPT-2-M14]">
      <seq>tttcatctggcagctcaaaatccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacatccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgtttaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagttcatttgcggaggcccgcacagctgggtttactgaagagaacggtacccttggtgacatatatgagactatctctggcagtgatctagtgctgctattgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46547" stop="49410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46847" g_stop="46992" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="239" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="305" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="446" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49110" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="598" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E365316" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46847" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCC</genome_strand>
        <mrna_strand>TTTCATCTGGCAGCTCAAAATCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACATCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTTAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGTTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAACGGTACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTATTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284602" ref_strand="+" ref_description="SGN-E284602 [cLES-3-E18]">
      <seq>ttcatctagcagctcaaactccggcggaggcgcgcttgcggctcgcatggtcgctgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacgtccgtttttaagaaggagaaagtaaccctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctttcacatgaagccaaacagcatacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46548" stop="49313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46848" g_stop="46992" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="238" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="304" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="445" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49013" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="500" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E284602" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46848" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGC</genome_strand>
        <mrna_strand>TTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTTTCACATGAAGCCAAACAGCATACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604076" ref_strand="+" ref_description="SGN-E604076 [67267]">
      <seq>ggcagctcaaactccggcggcggcgcgcttgcggctcgcatggtcgccgcacctgctaccgtcaaagctcctgcttcgtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattgggattacggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttgggcatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttccagggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46556" stop="49482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46855" g_stop="46992" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="231" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="297" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="439" r_length="142" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49183" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="665" r_length="226" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E604076" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46855" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATT-GGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTT-CAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCAC</genome_strand>
        <mrna_strand>GGCAGCTCAAACTCCGGCGGCGGCGCGCTTGCGGCTCGCATGGTCGCCGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGGATTACGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGGCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCCAGGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560131" ref_strand="+" ref_description="SGN-E560131 [19737]">
      <seq>gtttgattttgaaacttccgtttttaagaaggagaaagtaaccctcgctggaaatgatgagtacattgtgaggggagggagagatttgttcaagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtatctactcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaaattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagatttatgttcaaggaaacgaagttaatggtgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46632" stop="49459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46932" g_stop="46992" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="154" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="220" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="361" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49159" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="560" r_length="199" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E560131" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46932" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGA</genome_strand>
        <mrna_strand>GTTTGATTTTGAAACTTCCGTTTTTAAGAAGGAGAAAGTAACCCTCGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGAGAGATTTGTTCAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATCTACTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAA-ATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATT-TATGTTCAAGGAAACGAAGTTAATGGTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270955" ref_strand="+" ref_description="SGN-E270955 [cLEM-22-A23]">
      <seq>gaaagtaaccctagctggaaatgatgagtacattgtgaggggagggggagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46665" stop="49608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46965" g_stop="46992" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="121" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="187" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="328" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="556" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49272" g_stop="49308" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="593" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E270955" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46965" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTAACCCTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGT</genome_strand>
        <mrna_strand>GAAAGTAACCCTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGGGGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318912" ref_strand="+" ref_description="SGN-E318912 [cTOB-11-L11]">
      <seq>ctagctggaaatgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46675" stop="49490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46975" g_stop="46992" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="177" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="318" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="546" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49272" g_stop="49277" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="552" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E318912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46975" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATT</genome_strand>
        <mrna_strand>CTAGCTGGAAATGATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326420" ref_strand="+" ref_description="SGN-E326420 [cTOC-14-G12]">
      <seq>tggaaattatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcaatcaggagattatatgttcaaagaaaagaagtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46890" stop="49450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46980" g_stop="46992" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="106" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="172" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="313" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48959" g_stop="49150" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="505" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E326420" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46980" e_stop="46992"/>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATGATGAGGTGCATTCCTCATCTTCTCTAATTGTTTAACCAGATTCAAATTAATCGTGTGAATTTATATTTTTGATTCATATTATGAATCCATCTAGTCTAATTTGAAAGTTAGTTAAATTGATGCTTATGAGCTAAAAGTAGCTAAAGAACTGTGTTTATGCTGAAAGTTTATCTGTAGTTTTTGACCATATGAAATATTGTGGTGCAGTACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAAT</genome_strand>
        <mrna_strand>TGGAAATTATGAG..........................................................................................................................................................................................................TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAATCAGGAGATTATATGTTCAAAGAAAAGAAGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698029" ref_strand="+" ref_description="SGN-E698029 [FA05AB11]">
      <seq>gagccccattgatgagtacattgtgaggggaggtagagatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaagtacactgaaaatggaatgaatgaggagcttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46887" stop="49849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47195" g_stop="47287" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="109" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="175" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="316" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="544" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="662" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="746" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E698029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47195" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCAT</genome_strand>
        <mrna_strand>TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAAGTACACTGAAAATGGAATGAATGAGGAGCTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701867" ref_strand="+" ref_description="SGN-E701867 [FA17AF08]">
      <seq>gatttgttcaagtatttgccggatgctttcaaaggaatcaagcagatcggagttatcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46916" stop="50117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47216" g_stop="47287" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="138" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="279" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="507" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="625" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="765" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49720" g_stop="49817" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="863" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E701867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47216" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTA</genome_strand>
        <mrna_strand>GATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588747" ref_strand="+" ref_description="SGN-E588747 [42307]">
      <seq>caagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaacgaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcaggaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaggcaaaagggcatgtcggctgtgtacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46924" stop="49899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47224" g_stop="47287" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="130" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="271" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="499" r_length="228" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="617" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="760" r_length="143" r_score="0.921"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49720" g_stop="49739" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="780" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E588747" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47224" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCA-GAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCA-AC-AAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGA</genome_strand>
        <mrna_strand>CAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAACGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAGGCAAAAG..................................................................................................................GGCATGTCGGCTGTGTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450590" ref_strand="+" ref_description="SGN-E450590 [cSTS-9-F14]">
      <seq>caagtatttgcctgatgcttttaaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46924" stop="49690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47224" g_stop="47287" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="130" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="271" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="499" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="617" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49477" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="629" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E450590" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47224" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTG</genome_strand>
        <mrna_strand>CAAGTATTTGCCTGATGCTTTTAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562326" ref_strand="+" ref_description="SGN-E562326 [766]">
      <seq>taaaggaatcaagcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttgggccatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaaaggaatgggtccctcagtcaggagattatatgttcaaggcaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46946" stop="49596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47245" g_stop="47287" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="109" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="250" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="480" r_length="230" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49296" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="505" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E562326" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47245" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGG-CCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGG-AAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATG</genome_strand>
        <mrna_strand>TAAAGGAATCAAGCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAAGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGCAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561347" ref_strand="+" ref_description="SGN-E561347 [17326]">
      <seq>aaggaatcaagcagattggagttatcggctgggggtctcaggacctgctcaagcccagaacttgagggattccctcgcagaaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcagaggctcgcacagctgggtttactgaagagaacggaacccttggtgacatatacgagactatctctggcagtgatttagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccctcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtaaatgcataattggagtcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46947" stop="49887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47247" g_stop="47287" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="107" r_length="66" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="248" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="476" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="594" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49587" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="715" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E561347" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47247" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAG-AAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCA</genome_strand>
        <mrna_strand>AAGGAATCAAGCAGATTGGAGTTATCGGCTGGGGGTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GACCTGCTCAAGCCCAGAACTTGAGGGATTCCCTCGCAGAAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCAGAGGCTCGCACAGCTGGGTTTACTGAAGAGAACGGAACCCTTGGTGACATATACGAGACTATCTCTGGCAGTGATTTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTA-AATGCATAATTGGAGTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400100" ref_strand="+" ref_description="SGN-E400100 [cSTC-4-H2]">
      <seq>gcagattggagttattggctggggttctcagggacctgctcaagcccagaacttgagggattctctcgcctaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaatagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcatgctgataattatgagaaagtattttctcacatgaagccaaacagcatactttgggctttcacatggatacctccttggccatttgcagtcaatggaccttgacttcccgaagaacattaatgtgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46957" stop="49387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47257" g_stop="47287" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="97" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="238" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49087" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="368" r_length="130" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E400100" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47257" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCGGAGTTATCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACT-TGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCT</genome_strand>
        <mrna_strand>GCAGATTGGAGTTATTGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTCGCCTAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAATAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTTGGGCTTTCACATGGATACCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAATGTGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327085" ref_strand="+" ref_description="SGN-E327085 [cTOC-18-F24]">
      <seq>tcggctggggttctcagggacctgctcaagcccagaacttgagggattctcttgcagaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcangaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46971" stop="49809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47271" g_stop="47287" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48204" g_stop="48269" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="83" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="224" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="452" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="570" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49466" g_stop="49509" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="614" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E327085" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47271" e_stop="47287"/>
          <exon e_start="48204" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCTGGGGTTCTCAGGTATATCTCATGGATTCAGTTTTTGTTGATTCCATTTTTTGATCAGAAATTACCTTTGATTGAATGATATTCTTTAGTCTGAAATGACAAGGGATGACATGTTCTGATTCTAAGGAATTAATTCGTGTTTGCAATTATAAATTTTTAGGAAAAAGTTCCTCATAGTTCTTTATTGTTGCCGGTCTAAAGTAAAAGAGAAAGATGATATTTTTGAGTGCCATCTGATTGATGAATATCTTGGTTATTAGAATGTTGAATATTCCCTTTTTTATAACATTGGAATCTGGTAAATGTTCCTTTGCTTTTTCTAATTTACTGGTGAGCTATTATCTTTTGATGTAATCAGTCATCCGGCTTTGAACTGCTTTCTTATGTTGCTCTTCCTGAATAGCTCGTCACGCTTCATCCTAGGATGATTTTTTTTCTATCAGCTATTGGGTTGTTCTAGTTTAAATATATGATGACGTGGTTTCCATGAGCTATCTTCGTTTAATTTTCCTGAAAAAGGAAACCTTTTTTTCCTTACATGTAAGACATAAATATTTTACATGCTTCTTTTCATGTTTAATGCTCTCTTTTTCGGTGTTTTGAAAAGCAAAAAACAAGAAATGAAGCACACTCTTCTTTTGACTGCAGGGTAATATTTATGAGAAGTTAAAAAATGTCGTATCTACATTAATATACAGTACTATACTAATTTCAGCTTTCAATTCAATAATGTCAATATTAATCCAATTCAAACATTTCTGTTGTATCACTTTGTGCATCATTGTTTGAACCACACTTCTCTGAACTGCATGGTTTCACCTTGGTTGCATCGCTTCATCACTGGATGTAACGGCTTTTAACAGCACTGCTCTTTTTTCTTCTTTTTTTCATACCTAGATTTGCTTAATAAATACCATTTCTTTTGTAGGGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTC</genome_strand>
        <mrna_strand>TCGGCTGGGGTTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCANGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455691" ref_strand="+" ref_description="SGN-E455691 [cSTS-27-C23]">
      <seq>caagcccagaacttgagggattctctcgcagaaataaaatctgacatagttgttaagattggtttaaggaagggttcaagctcatttgcagaggcccgcacagctgggtttactgaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaagtacactgagaacggaatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47913" stop="49837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48213" g_stop="48269" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="198" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="426" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="544" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49466" g_stop="49537" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="616" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E455691" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48213" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATG</genome_strand>
        <mrna_strand>CAAGCCCAGAACTTGAGGGATTCTCTCGCAGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGGAAGGGTTCAAGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACTGAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAAGTACACTGAGAACGGAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338716" ref_strand="+" ref_description="SGN-E338716 [cTOE-21-I13]">
      <seq>tcggcacgaggctcttgtctgaaataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47931" stop="49475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48224" g_stop="48269" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.761"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="188" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48959" g_stop="49175" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="405" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E338716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48224" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGGATTCTCTTG-CAGAAATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTG</genome_strand>
        <mrna_strand>TCGGCACGAGGCTCTTGTCTGAAATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736672" ref_strand="+" ref_description="SGN-E736672 [LC06CG09]">
      <seq>ataaaatctgacatagttgttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47946" stop="50740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48246" g_stop="48269" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="165" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="393" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="511" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="651" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="819" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50418" g_stop="50441" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="843" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E736672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48246" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAATCTGACATAGTTGTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTC</genome_strand>
        <mrna_strand>ATAAAATCTGACATAGTTGTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274641" ref_strand="+" ref_description="SGN-E274641 [cLEN-11-F6]">
      <seq>gttaagattggtttaagaaagggttcaagctcatttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48121" stop="49888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48264" g_stop="48269" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48423" g_stop="48563" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="147" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="375" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="493" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49466" g_stop="49588" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="616" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E274641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48264" e_stop="48269"/>
          <exon e_start="48423" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGTAATAATTATCTTCTTCTGCTTTCTCCTTCCCATCCCACAGAGACAGATAACAGTGAAAGACCGTGTTTGATATGGCGGTGAATGTGTGAATTGGTTGTTATACTTTTGGCAAATTGTTAAAGCTTACAAGTGTAATTTCTGTTTCATGCAGATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAA</genome_strand>
        <mrna_strand>GTTAAG.........................................................................................................................................................ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567536" ref_strand="+" ref_description="SGN-E567536 [11677]">
      <seq>agctcatttgcagaggcccgcacagctgggtttacctgaagagagtgggaaccctgcgtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtcctgttgcccttggttctccctttacttttgctactactctagagcagaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaagggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtaagtgcataacaggagtcattttcaaagaccatatcaacaaagggcatgttgggctgtgtacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48144" stop="49908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48444" g_stop="48563" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="350" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="468" r_length="118" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="609" r_length="141" r_score="0.936"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49720" g_stop="49741" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="632" r_length="23" r_score="0.818"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E567536" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48444" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTA-CTGAAGAGAATGG-AACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGT-CTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAA-GGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCA-TTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTT-GGCTGTGTATGACT</genome_strand>
        <mrna_strand>AGCTCATTTGCAGAGGCCCGCACAGCTGGGTTTACCTGAAGAGAGTGGGAACCCTGCGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCA-GAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTA-AGTGCATAACAGGAGTCATTTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGGCTGTGTACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704032" ref_strand="+" ref_description="SGN-E704032 [FA23AF11]">
      <seq>catttgcggaggcccgcacagctgggtttactgaagagaatggaacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttccccatggggaaaattgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48148" stop="50762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48448" g_stop="48563" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="344" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="462" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="602" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="770" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50418" g_stop="50462" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="815" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E704032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48448" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAA</genome_strand>
        <mrna_strand>CATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCCATGGGGAAAATTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719114" ref_strand="+" ref_description="SGN-E719114 [FC06DB07]">
      <seq>tagggcgattggcggccaatcggccgaattggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcaaaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48196" stop="50869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48470" g_stop="48563" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.809"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="324" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="442" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="582" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="750" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50418" g_stop="50569" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="902" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E719114" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48470" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTTACT-GAAGAGAAT-GGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGC</genome_strand>
        <mrna_strand>TAGGGCGATTGGCGGCCAATCGGCCGAATTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAAAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481091" ref_strand="+" ref_description="SGN-E481091 [cSTD-16-O16]">
      <seq>gaagagagtgggacccttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtattttctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttgggctgtgtacaactcattgactgaagagggcaagaagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggaagtgttgtcttggcaggccgccgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48180" stop="50184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48480" g_stop="48563" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="312" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="430" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="570" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49720" g_stop="49884" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="738" r_length="168" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E481091" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48480" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTT-GGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAA-GGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGG-AGCGTTGTCTTGGCTGGCCGCCGCTTT</genome_strand>
        <mrna_strand>GAAGAGAGTGGGACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTATTTTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAAGTGTTGTCTTGGCAGGCCGCCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314525" ref_strand="+" ref_description="SGN-E314525 [cTOA-20-A1]">
      <seq>cttggtgacatatatgagactatctctggcagtgatctagtgctgcttttgatttctgatgctgctcaggctgataattatgagaaagtgttctctcacatgaagccaaacagcatacttgggctttcacatggattcctccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgangagcttgcatacaagaacactgtagaatgcataacangagtcatttcaaaaccatatcaacaaaaggcatgttggctgtgtatgactcattgactgangagggncaagaagagtttgaagctgcatacagtgcttcattctaccctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48195" stop="50105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48495" g_stop="48563" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="297" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="554" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49720" g_stop="49805" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="639" r_length="85" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E314525" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48495" e_stop="48563"/>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAGGTTGGACATTGTTTTAGCCTCTGTTTTTATTGTGGCAACACTTGGTAATTATGTTTTTTGATTGTTACATTTTATTGAAGGCTTCCTTCACACAGTAAGTTCAACATCTCGGTTAACTTGGTAGATTTTTTGTCGAGTCTACAATTGTTTTGGACTAAGATATGATATAGTTAATGGGATATTGTTACTTATCGTCTCTTCATCATCTTTTGAAATCAAATTCACGTTTGGAGTGATTAATGTGTGGATTATAATGTTGGGGCCAACTTTTGTCTTGATTTAACTATTGCTAAAGCATAATCTTTTAGTATTCGGAATCAATGTAAAACAGAAGCATTCTTGGGAGGCGGGAGGGGTTCAAATATTGCTGTCTAATTTTTGTGATGTATGTGCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGG-CAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCAT</genome_strand>
        <mrna_strand>CTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGANGAGCTTGCATACAAGAACACTGTAGAATGCATAACANGAGTCATTTC-AAAACCATATCAACAAAA..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGANGAGGGNCAAGAA-GAGTTTGAAGCTGCATACAGTGCTTCATTCTA-CCCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569165" ref_strand="+" ref_description="SGN-E569165 [13561]">
      <seq>ctgcttttgattctggatgctgctcaggctgataattatgagaaagtgtctctcacatgaagccaaacagcattacttgggctttcacatggattcctccttggncatttgcagtcaatgggccttgacttccccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccctcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagaatgcataactgagagtcatttcaaagaccattatcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48652" stop="49900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48959" g_stop="49186" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="256" r_length="229" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="374" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="513" r_length="139" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E569165" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48959" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCA-TACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTT-CCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAG-GAGTCATTTCAAAAACCATATCAACAAAG</genome_strand>
        <mrna_strand>GCTGATAATTATGAGAAAGTG-TCTCTCACATGAAGCCAAACAGCATTACTTGGGCTTTCACATGGATTCCTCCTTGGNCATTTGCAGTCAATGGGCCTTGACTTCCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACTGAGAGTCATTTCAAAGACCAT-T-ATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585871" ref_strand="+" ref_description="SGN-E585871 [68336]">
      <seq>ggctttcacatggattcctccttggccattctgcagtcaatggaccttgacttcccgaagaacattagtgtgattgctgtatgtcccaagggaatgggtccctcagtcaggagattatatgttcaaggaaaagaagttaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgcgcttttatgaaacaggagggcttacctagcttcccaatggggaaaattgagcaaacaaggatgtggaaaggttggttgagccgcgttcgagacaaacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48711" stop="50803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49011" g_stop="49186" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="295" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="435" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="602" r_length="167" r_score="0.940"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50477" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="663" r_length="61" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E585871" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49011" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTCACATGGATTCCTCCTTGGCCATT-TGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAA-AGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAG</genome_strand>
        <mrna_strand>GGCTTTCACATGGATTCCTCCTTGGCCATTCTGCAGTCAATGGACCTTGACTTCCCGAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGTCCCTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTTAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCG-CGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAGGAGGGCTTACCTAGCTTCCCAATGGGGAAAATTGAGCAAACAAGGATGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702545" ref_strand="+" ref_description="SGN-E702545 [FA19AB01]">
      <seq>ccttggccatttgcagtcaatgggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagatttatcatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48730" stop="51408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49030" g_stop="49186" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="275" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="415" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="583" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="739" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50958" g_stop="51108" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="890" r_length="151" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E702545" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49030" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGA-TTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCA</genome_strand>
        <mrna_strand>CCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTTATC-ATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343247" ref_strand="+" ref_description="SGN-E343247 [cTOF-17-G12]">
      <seq>gggccttgacttcccaaagaacattagtgtgattgctgtatgtcccaagggaatggggccttcagtcaggagattatatgttcaaggaaaagaagtcaatggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccggcgcttttatgaaaaggagggcttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48751" stop="50736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49051" g_stop="49186" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="254" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="394" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="562" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50436" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="581" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E343247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49051" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTG</genome_strand>
        <mrna_strand>GGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGGCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204063" ref_strand="+" ref_description="SGN-E204063 [cLEC-22-O22]">
      <seq>aagaagtcaatggtgctggaattaattcaagttttgcagttcaccacgatattgatggaagagccacagatgttgctcttgggtggtctgatgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggactgaatgaggagcttgcatacaataacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacaatgcttcattctacccctgcatggagattttgtatgagtgctatgaacatgtagctgctggtagtgagatcaggagcgttgtcttggctggccgccgctnttatgaaaaggagggcttacctgcctttccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48840" stop="50746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49140" g_stop="49186" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="165" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="305" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="473" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50446" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="502" r_length="29" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E204063" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49140" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAAT</genome_strand>
        <mrna_strand>AAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAC.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGATGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGACTGAATGAGGAGCTTGCATACAATAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAATGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAACATGTAGCTGCTGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTNTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411921" ref_strand="+" ref_description="SGN-E411921 [STM-15-B1]">
      <seq>tggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48850" stop="51338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49150" g_stop="49186" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="155" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="295" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="463" r_length="168" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="619" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50958" g_stop="51038" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="700" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E411921" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49150" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAAT</genome_strand>
        <mrna_strand>TGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469819" ref_strand="+" ref_description="SGN-E469819 [cSTB-14-I22]">
      <seq>tggtgctggaattaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48850" stop="50866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49150" g_stop="49186" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="155" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="295" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="463" r_length="168" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50566" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="612" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E469819" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49150" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGAT</genome_strand>
        <mrna_strand>TGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588265" ref_strand="+" ref_description="SGN-E588265 [41814]">
      <seq>attaattcaagttttgcagttcaccaggatattgatggaagagccacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataactggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaggagggcaagagggagtttgaaggctgcatacagtgcttcattttaccccttgcatggagattttgtatgagtgctatgaaggatgtagctacaggtagcgagatcaggagtgttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48860" stop="50167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49160" g_stop="49186" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="145" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="285" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49867" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="436" r_length="151" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E588265" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49160" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTCAAGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAA-GCTGCATACAGTGCTTCATTCTACCCC-TGCATGGAGATTTTGTATGAGTGCTATGAA-GATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCT</genome_strand>
        <mrna_strand>ATTAATTCAAGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACTGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAGGAGGGCAAGAGGGAGTTTGAAGGCTGCATACAGTGCTTCATTTTACCCCTTGCATGGAGATTTTGTATGAGTGCTATGAAGGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268903" ref_strand="+" ref_description="SGN-E268903 [cLEM-4-L21]">
      <seq>agttttgcagttcaccaggatattgatggaagagccacagatgttgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggaaggcttacctgccttcccaatggggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48957" stop="50755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49169" g_stop="49186" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49272" g_stop="49389" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="136" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="276" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="444" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50418" g_stop="50455" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="482" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E268903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49169" e_stop="49186"/>
          <exon e_start="49272" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTGCAGTTCACCAGGTCTGTTTCAATGCCCTTTCTCTACTCTGTTTCCTTCAAGCCATTAATTATGTTCAATCAGACTCACACCTTTTACTATCTCCAGGATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAAT</genome_strand>
        <mrna_strand>AGTTTTGCAGTTCACCAG.....................................................................................GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAAGGCTTACCTGCCTTCCCAATGGGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441660" ref_strand="+" ref_description="SGN-E441660 [cSTA-31-I7]">
      <seq>cacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggttagtgtgttttcaagtctatttctagcttactaaagccgttatggttgagtaattgtggttccctcgttaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataactggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaggagggcaagagggagtttgaagctgcatacagtgcttcattttacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggctggccgccgcttttatgtaagtcatcttttactctgtagttttatgatagtaacttggccgggtttggactttggttttagtttagttctttatgattaggtttcgagatgtttttgaagacaattctggggaaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48989" stop="50313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49289" g_stop="49605" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="50013" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="606" r_length="292" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441660" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49289" e_stop="49605"/>
          <exon e_start="49720" e_stop="50013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTC-ATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATG</genome_strand>
        <mrna_strand>CACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAGGTTAGTGTGTTTTCAAGTCTATTTCTAGCTTACTAAAGCCGTTATGGTTGAGTAATTGTGGT----TCCCTCGTTAGGTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACTGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAGGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATCTTTTACTCTGTAGTTTTATGATAGTAACTTGGCCGGGTTTGGACTTTGGTTTTAGTTTAGTTCTTT-ATGATTAGGTTTCGAGATGTTTTTGAAG-ACAATTCTGGGGAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441661" ref_strand="+" ref_description="SGN-E441661 [cSTA-31-I7]">
      <seq>cacagatgttgctctagggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggttagtgtgttttcaagtctatttctagcttactaaagccgttatggttgagtaattgtggttccctcgttaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataactggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaggagggcaagagggagtttgaagctgcatacagtgcttcattttacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggctggccgccgcttttatgtaagtcatcttttactctgtagttttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48989" stop="50219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49289" g_stop="49605" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49919" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="514" r_length="200" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E441661" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49289" e_stop="49605"/>
          <exon e_start="49720" e_stop="49919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTC-ATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAAT</genome_strand>
        <mrna_strand>CACAGATGTTGCTCTAGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAGGTTAGTGTGTTTTCAAGTCTATTTCTAGCTTACTAAAGCCGTTATGGTTGAGTAATTGTGGT----TCCCTCGTTAGGTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACTGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAGGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATCTTTTACTCTGTAGTTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276008" ref_strand="+" ref_description="SGN-E276008 [cLEN-12-A19]">
      <seq>tgctcttgggtggtctgttgcccttggttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="48998" stop="50866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49298" g_stop="49389" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="232" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="400" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50418" g_stop="50566" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="549" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E276008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49298" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGAT</genome_strand>
        <mrna_strand>TGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591314" ref_strand="+" ref_description="SGN-E591314 [45023]">
      <seq>gttctccctttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttggaccaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49024" stop="51460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49324" g_stop="49389" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="206" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="374" r_length="168" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="530" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50958" g_stop="51161" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="736" r_length="206" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E591314" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49324" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTT-GA-CAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCC</genome_strand>
        <mrna_strand>GTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGGACCAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559844" ref_strand="+" ref_description="SGN-E559844 [19405]">
      <seq>cttacttttgctactactctagagcaggaatataaaagtgacatttttggagaacgaggcattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaacggaatgaatgaggagcttgcatacaagaacactgtagagtgcataacaggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaacagcgtcatcgagtctgtagattctttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49033" stop="51338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49332" g_stop="49389" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="198" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="366" r_length="168" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="522" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50958" g_stop="51038" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="604" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E559844" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49332" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAA-AGCGTCATCGAGTCTGTAGATTCTTTGAAT</genome_strand>
        <mrna_strand>CTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAACGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAGTGCATAACAGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAACAGCGTCATCGAGTCTGTAGATTCTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451179" ref_strand="+" ref_description="SGN-E451179 [cSTS-12-A9]">
      <seq>caggaatataaaagtgacatttttggagaacgaggtattttacttggtgctgtccatggagttgtggagtcacttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataactggagtcatttcaaagaccatatcaacaaagggcatgttggctgtgtacaactcattgaccgaggagggcaagagggagtttgaagctgcatacagtgcttcattttacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcattcttactccgagattatcaatgaaagtgtcattgagtctgtagattcattgaatccgttcatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcgtttttaggttccaggaaagtgggcccctcgatttgattacaacctcacccagcaagcacttgtagctgtggataataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49056" stop="51472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49356" g_stop="49389" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="174" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="342" r_length="168" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="498" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50958" g_stop="51173" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="715" r_length="217" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E451179" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49356" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGG-AAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAAC</genome_strand>
        <mrna_strand>CAGGAATATAAAAGTGACATTTTTGGAGAACGAG............................................................................GTATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCACTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACTGGAGTCATTTCAAAGACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACCGAGGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCATTCTTACTCCGAGATTATCAATGAAAGTGTCATTGAGTCTGTAGATTCATTGAATCCGTTCATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCGTTTTTAGGTTCCAGGAAAGTGGGCCCCTCGATTTGATTACAACCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707728" ref_strand="+" ref_description="SGN-E707728 [FA33DC07]">
      <seq>catttttggggaacgaggcattttacttggtgctgtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49164" stop="51652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49373" g_stop="49389" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76">
            <donor d_prob="0.901" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49466" g_stop="49605" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="157" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="325" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="481" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50958" g_stop="51352" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="876" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E707728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49373" e_stop="49389"/>
          <exon e_start="49466" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCG</genome_strand>
        <mrna_strand>CATTTTTGGGGAACGAG............................................................................GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731792" ref_strand="+" ref_description="SGN-E731792 [LA28AG12]">
      <seq>gtccatggagttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccccagttgatatttctgtaacagcagatgctgattttgtccgccctgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49183" stop="51608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49483" g_stop="49605" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="291" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="447" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51308" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="798" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E731792" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49483" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTC</genome_strand>
        <mrna_strand>GTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCCCAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302588" ref_strand="+" ref_description="SGN-E302588 [cLEX-1-A15]">
      <seq>gttgtggagtcgcttttcagaaggtacactgagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggggcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49192" stop="51378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49492" g_stop="49605" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="282" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="438" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51078" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="559" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E302588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49492" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACA</genome_strand>
        <mrna_strand>GTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGGGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242484" ref_strand="+" ref_description="SGN-E242484 [cLED-30-I15]">
      <seq>gagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49222" stop="51394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49522" g_stop="49605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="252" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="408" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51094" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="545" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E242484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49522" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGC</genome_strand>
        <mrna_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236440" ref_strand="+" ref_description="SGN-E236440 [cLED-13-J1]">
      <seq>gagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49222" stop="51370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49522" g_stop="49605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="252" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="408" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51070" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="521" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E236440" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49522" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCAT</genome_strand>
        <mrna_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239592" ref_strand="+" ref_description="SGN-E239592 [cLED-23-H21]">
      <seq>gagaatggaatgaatgaggagcttgcatacaagaacactgtagaatgcataacaggagtcatttcaaaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49222" stop="50866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49522" g_stop="49605" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="252" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50566" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="401" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E239592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49522" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGAT</genome_strand>
        <mrna_strand>GAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574673" ref_strand="+" ref_description="SGN-E574673 [34178]">
      <seq>actgtagaatgcataactggagtcatttcaaagagcatatcaacaaagggcatgttggctgtgtacaactcattgactgaggagggcaagagggagtttgaagctgcatacagtgcttcattttacccctgcatggagattttgtatgagtgctatgaagatgtactacaggtagcgagatccaggagtgttgtcttggctggccgccgctttcatgaaaaggagggcttaactgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcattcttactccgagattatcaatgacagtgtcatcggagtctgtagattcattgaatccgttcatgcacgctcgtggagtatcattcatggttgaccaaattgctctacaacagcacgtttaggttccaggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49258" stop="51415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49558" g_stop="49605" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="216" r_length="168" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="372" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51115" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="533" r_length="161" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E574673" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49558" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGAT-CAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATC-GAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGA-C-AATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTG</genome_strand>
        <mrna_strand>ACTGTAGAATGCATAACTGGAGTCATTTCAAAGAGCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGAGGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTA-CTACAGGTAGCGAGATCCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTAACTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCATTCTTACTCCGAGATTATCAATGACAGTGTCATCGGAGTCTGTAGATTCATTGAATCCGTTCATGCACGCTCGTGGAGTATCATTCATGGTTGACCAAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249032" ref_strand="+" ref_description="SGN-E249032 [cLEF-49-E8]">
      <seq>catttcaaaaaccatatcaaccaaagggccatgttggctgtgtatgactcattgacctgaggagggccaagaaggagtttgaagctgcataccagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctaccaggtagtgagatcaggagccgttgtcttggctggcccccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaaccaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgntctngttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49281" stop="51460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49581" g_stop="49605" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="200" r_length="174" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="357" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51160" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="560" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E249032" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49581" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCAAAAACCATATCAA-CAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGG-CATGTTGGCTGTGTATGACTCATTGA-CTGAGGAGGG-CAAGAAGGAGTTTGAAGCTGCATA-CAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTA-CAGGTAGTGAGATCAGGAG-CGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAA-CAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGC</genome_strand>
        <mrna_strand>CATTTCAAAAACCATATCAACCAAAG..................................................................................................................GGCCATGTTGGCTGTGTATGACTCATTGACCTGAGGAGGGCCAAGAAGGAGTTTGAAGCTGCATACCAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACCAGGTAGTGAGATCAGGAGCCGTTGTCTTGGCTGGCCCCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACCAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGNTCTNGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211819" ref_strand="+" ref_description="SGN-E211819 [cLEC-66-N17]">
      <seq>aaaaccatatcaacaaagggcatgttggctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49288" stop="51353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49588" g_stop="49605" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="186" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="342" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="51053" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="438" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E211819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49588" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCT</genome_strand>
        <mrna_strand>AAAACCATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583863" ref_strand="+" ref_description="SGN-E583863 [9684]">
      <seq>catatcaacaaagggcatgttggctgtgtacaactcattgactgatgagggcaatagggagtttgaagctgcatacagtgcttcattttacccctggatggagattttgtatgattgctatcgaagatgtagctacaggtagcgagatcacgagtgtagtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccatccggtgatcttgggtcctctgtatcctttcactgctggtgtctttgtggcgttgatgatggcccagatcgaggttctgaggaagaaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49418" stop="51280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49593" g_stop="49605" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114">
            <donor d_prob="0.893" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49720" g_stop="49887" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="182" r_length="169" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="339" r_length="157" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50958" g_stop="50981" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="363" r_length="24" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E583863" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49593" e_stop="49605"/>
          <exon e_start="49720" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="50981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCAACAAAGGTCGGTCTTCGATTTTTATCTTCAGTTAGAGTATTATGTCGAGGAAGATGTTTACATAGCACTTTTGTTAAAGTTTCCCTAAAATTGTTATATGTACATGTATCCGTTTTCCAGGGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTAT-GAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTT-GGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGA</genome_strand>
        <mrna_strand>CATATCAACAAAG..................................................................................................................GGCATGTTGGCTGTGTACAACTCATTGACTGATGAGGGCAATAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGGATGGAGATTTTGTATGATTGCTATCGAAGATGTAGCTACAGGTAGCGAGATCACGAGTGTAGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCATCCGGTGATCTTGGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCGTTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGGTTCTGAGGAAGAAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699291" ref_strand="+" ref_description="SGN-E699291 [FA09CA04]">
      <seq>ctttgctgtgtatgactcattgactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcacgcaatctgtcaattaagggctttacggcccactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49426" stop="51646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49725" g_stop="49887" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="319" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51346" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="708" r_length="389" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E699291" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49725" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTG</genome_strand>
        <mrna_strand>CTTTGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCACGCAATCTGTCAATTAAGGGCTTTACGGCCCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725046" ref_strand="+" ref_description="SGN-E725046 [FC25DF07]">
      <seq>ctgtgtatgactcattcactgaggagggcaagaaggagtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaaaaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcaaatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49430" stop="51601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49730" g_stop="49887" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="314" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51301" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="658" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E725046" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49730" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCC</genome_strand>
        <mrna_strand>CTGTGTATGACTCATTCACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAAAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAAATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618214" ref_strand="+" ref_description="SGN-E618214 [68890]">
      <seq>ttattgactgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggatggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaagccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49441" stop="50883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49741" g_stop="49887" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="303" r_length="156" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E618214" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49741" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG</genome_strand>
        <mrna_strand>TTATTGACTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGATGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAAGCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448148" ref_strand="+" ref_description="SGN-E448148 [cSTS-1-J12]">
      <seq>ctgaagagggcaagagggagtttgaagctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagctgtggataataacgcccctatcaatcaagatctcatcagcaacttccttgcagatcctgtgcatggagctattaaagtctgtgctgaactgagacccacagttgatatttctgtaacagcagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49448" stop="51586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49748" g_stop="49887" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="296" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51286" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="625" r_length="329" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E448148" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49748" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGC</genome_strand>
        <mrna_strand>CTGAAGAGGGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAACGCCCCTATCAATCAAGATCTCATCAGCAACTTCCTTGCAGATCCTGTGCATGGAGCTATTAAAGTCTGTGCTGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423511" ref_strand="-" ref_description="SGN-E423511 [STM-42-K9]">
      <seq>ggcaagagggagtttgaagctgcatacagtgcttcattttacccctgcatggagatttgntatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcattcttactccgagattatcaatgaaagtgtcattgagtctgtagattcattgaatccgttcatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaacctcacccagcaagcacttgtagctgtggataataatgcccctatcaatcgagatctcatcagtaacttccttgcagatcccgtgcatggagctattaaagtatgtgcggaactgagacccacagttgatatttctgtaacagcagatgctgattttgtccgccccgagctcaggcaatctggcaattaagggatttacgggtcactttgtgagcgagttagaattttgtgtaattgtgaggttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagcctttttcgggtactaggcactttctttatgtaaccttttgctgaataacagattcgaaatttggaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49456" stop="51757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49756" g_stop="49887" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="288" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51449" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="785" r_length="497" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E423511" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423511" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49756" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAG---CAA--GTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCC</genome_strand>
        <mrna_strand>GGCAAGAGGGAGTTTGAAGCTGCATACAGTGCTTCATTTTACCCCTGCATGGAGATTTGNTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCATTCTTACTCCGAGATTATCAATGAAAGTGTCATTGAGTCTGTAGATTCATTGAATCCGTTCATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAACCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAATGCCCCTATCAATCGAGATCTCATCAGTAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTATGTGCGGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCCGAGCTCAGGCAATCTGGCAATTAAGGGATTTACGGGTCACTTTGTGAGCGAGTTAGAATTTTGTGTAATTGTGAGGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707394" ref_strand="+" ref_description="SGN-E707394 [FA32DE07]">
      <seq>cggtgtttgaagctgcatacagtgcttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49464" stop="51757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49763" g_stop="49887" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="281" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51457" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="781" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E707394" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49763" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCG</genome_strand>
        <mrna_strand>CGGTGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429568" ref_strand="-" ref_description="SGN-E429568 [STM-52-C22]">
      <seq>agctgcatacagtgcttcattttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgtgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagctggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagctgtggataataacgcccctatcaatcaagatctcatcagcaacttccttgcagatcctgtgcatggagctattaaagtctgtgctgaactgagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctggcaattaagggctttacgggtgggaattttgtggaattgtgaggtttagattttattttgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagcctttttcgttgcttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49473" stop="51768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49773" g_stop="49887" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="270" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51464" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="765" r_length="495" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="768" polyA_stop="777"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E429568" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="49773" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTA</genome_strand>
        <mrna_strand>AGCTGCATACAGTGCTTCATTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTG-TGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCTGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAACGCCCCTATCAATCAAGATCTCATCAGCAACTTCCTTGCAGATCCTGTGCATGGAGCTATTAAAGTCTGTGCTGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGGCAATTAAGGGCTTTACGGG------TG-G-G-AATTTTGTG-GAATT-GTGAGGTTTAGATTTTATTTTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCC-TTTTTCGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700340" ref_strand="+" ref_description="SGN-E700340 [FA12DD05]">
      <seq>cttcattctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagtgagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaaaaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagatttcaaatttggggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49487" stop="51821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49787" g_stop="49887" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="257" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51519" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="819" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="831"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E700340" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49787" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGG</genome_strand>
        <mrna_strand>CTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAAAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTTCAAATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464990" ref_strand="+" ref_description="SGN-E464990 [cPRO-19-D14]">
      <seq>cttcattttacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcattcttactccgagattatcaatgaaagtgtcattgagtctgtagattcattgaatccgttcatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaacctcacccagcaagcacttgtagctgtggataataatgcccctatcaatcgagatctcatcagtaacttccttgcagatcccgtgcatggagctattaaagtatgtgcggaactgagacccacagntgatatttctgtaacagcagatgctgattttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49487" stop="51596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49787" g_stop="49887" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="257" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51296" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="596" r_length="339" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E464990" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49787" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTC</genome_strand>
        <mrna_strand>CTTCATTTTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCATTCTTACTCCGAGATTATCAATGAAAGTGTCATTGAGTCTGTAGATTCATTGAATCCGTTCATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAACCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAATGCCCCTATCAATCGAGATCTCATCAGTAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTATGTGCGGAACTGAGACCCACAGNTGATATTTCTGTAACAGCAGATGCTGATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572107" ref_strand="+" ref_description="SGN-E572107 [31209]">
      <seq>ttttacccatgcatggagattttgtatgagtgctatgaagatgtagctacaggtagcgagatcaggagtgttgtcttggcaggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgaccaaacaaggatgtggaaggttggtgagcgcgttcgagcaacccggccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagctgtggataattaacgcccctatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49492" stop="51485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49792" g_stop="49887" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="252" r_length="156" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51184" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="480" r_length="228" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E572107" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49792" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAA-CAACACGCCTATCAA</genome_strand>
        <mrna_strand>TTTTACCCATGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGCGAGATCAGGAGTGTTGTCTTGGCAGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGACCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTTCGAGCAACCCGGCCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCTGTGGATAATTAACGCCCCTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252013" ref_strand="+" ref_description="SGN-E252013 [cLEG-8-A10]">
      <seq>tctacccctgcatggagattttgtatgagtgctatgaagatgtagctacaggtagggagatcaggagcggggtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49493" stop="51493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49793" g_stop="49887" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="251" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51193" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="487" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E252013" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49793" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCT</genome_strand>
        <mrna_strand>TCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGGGAGATCAGGAGCGGGGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715353" ref_strand="+" ref_description="SGN-E715353 [FB14AB08]">
      <seq>gagatcaggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49549" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49849" g_stop="49887" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="195" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51559" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="797" r_length="602" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E715353" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49849" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAG</genome_strand>
        <mrna_strand>GAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325055" ref_strand="+" ref_description="SGN-E325055 [cTOC-13-L15]">
      <seq>aggagcgttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49555" stop="51393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49855" g_stop="49887" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="189" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51093" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="325" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E325055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49855" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAG</genome_strand>
        <mrna_strand>AGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584861" ref_strand="+" ref_description="SGN-E584861 [10782]">
      <seq>gtttgtcttggctggccgccgcttttatgaaaaggagggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagccggtgatcttggtcctctgtatcctttcactgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggtcattcttactccgagattatcaatgaaagtgtcatcgagtctgtagattcattgaatccgttcatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaacctcacccagcaagcacttgtagctgtggataataaagcccctatcaatcgagatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtatgtgcggaactgagacccacagttgatatttctgtaacagcagatgctgattttgtccgccccgagctcaggcaatctggcaattaagggatttacgggtcactttgtgagcaagttagaattttgtgtaattgtgaggttgagatttcatattgttgatgtgtgttggtgaacgccagaatacttccatctgttaagcttataaagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="49562" stop="51744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49860" g_stop="49887" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50418" g_stop="50573" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="184" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50958" g_stop="51444" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="678" r_length="494" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E584861" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49860" e_stop="49887"/>
          <exon e_start="50418" e_stop="50573"/>
          <exon e_start="50958" e_stop="51444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATGCACAAGTGGGTTAATCTCAGAAAATGTTTTTCCTGGTATATTTGGACTAGTTTTTGCCAGATCTTTGGTTTCTCGGTTACTGGAAAATAAGTATGATTCCTGAAAAAAGTCTTGTTTTAGAAACAAACACAATTGTTTCAGGTTTGAAGCACTATATAAAAACTTTGCTATGTGGGCCTTTTTCTTTACCCTCTCAGCTATAAGAATAGCAGAAGGGCATTGCTTTTTTCTCTATATAAGTTTTGAGAGTATAATCCTCTTACTAAGACAATGTGCCTTTTTCGGTTAATCCTAATTTTGTTCACATGTTAGACCTGGTACTATAAGGTCTTCAAGGGGATAGTTGAAGAAAAACGTTAAATACTAAAATAAAATGATTTTAACTTTGGTTTCTGTACATGCAGGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGC--G--AGCA-AGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTT-AGCTTAT-AAGAATCT</genome_strand>
        <mrna_strand>GTTTGTCTTGGCTGGCCGCCGCTTTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCCGGTGATCTTGGTCCTCTGTATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGTCATTCTTACTCCGAGATTATCAATGAAAGTGTCATCGAGTCTGTAGATTCATTGAATCCGTTCATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAACCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAAAGCCCCTATCAATCGAGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTATGTGCGGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCCGAGCTCAGGCAATCTGGCAATTAAGGGATTTACGGGTCACTTTGTGAGCAAGTTAGAATTTTGTGTAATTGTGAGGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAACGCCAGAATACTTCCATCTGTTAAGCTTATAAAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273335" ref_strand="+" ref_description="SGN-E273335 [cLEN-3-B13]">
      <seq>agggcttacctgccttcccaatggggaaaattgatcaaacaaggatgtggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcgatctgtcaattaaaggctttacgggtcactttgtgagcgagcaagtgagaattattgatgttgagatttcatattgttgatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50125" stop="51698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50425" g_stop="50573" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51398" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="590" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E273335" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50425" e_stop="50573"/>
          <exon e_start="50958" e_stop="51398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGT</genome_strand>
        <mrna_strand>AGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCGATCTGTCAATTAAAGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTATTGATGTTGAGATTTCATATTGTTGATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554650" ref_strand="+" ref_description="SGN-E554650 [cTSC-4-P23]">
      <seq>ggaaggttggtgagcgcgtccgagcaacccgaccagctggtgatcttggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50173" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50473" g_stop="50573" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51555" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="699" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E554650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50473" e_stop="50573"/>
          <exon e_start="50958" e_stop="51555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</genome_strand>
        <mrna_strand>GGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689714" ref_strand="+" ref_description="SGN-E689714 [LH_Ea01J24]">
      <seq>cattcttggtcctctgtatccattcaccgctggtgtctttgctggcattgatgatggcccagattgaggttctgaggaagaaaggacattcctactccgagattatcaatgaaagtgtcatcgagtctgtagattctttgaatccgtttgtgcggggtcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcggtttgattacaatctcacccaacaagcacttgtagccgtggataacaacacccctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccggaggggatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattttgtgggaatttgtgatgttgagatttcatgttgttgatgtgtgttggtcaaggcaagaatacttaaatctgttagcttataagaatcttagccttttttcgttgcttagttacgttggtactagcacttttttatgtaaccttttgcagaataaccgattcgaaatttgggaagcaactataaaatgtgggctatggcagtagcatgtttcagtctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50216" stop="51875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50513" g_stop="50573" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51576" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="692" r_length="630" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E689714" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50513" e_stop="50573"/>
          <exon e_start="50958" e_stop="51576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTG-TGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAA---T-T----A---GTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAGCATGTTTCAGTCTCTAC</genome_strand>
        <mrna_strand>CATTCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGCTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCCTACTCCGAGATTATCAATGAAAGTGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTGTGCGGGGTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGGTTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACCCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCGGAGGGGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTTTGTGGGAATTTGTGATGTTGAGATTTCATGTTGTTGATGTGTGTTGGTCAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCTTTTTTCGTTGCTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACCTTTTGCAGAATAACCGATTCGAAATTTGGGAAGCAACTATAAAATGTGGGCTATGGCAGTAGCATGTTTCAGTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693554" ref_strand="+" ref_description="SGN-E693554 [LH_Ea01J24](-)">
      <seq>cttggtcctctgtatccattccccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcctactccgagattatcaatgaaagtgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcggtttgattacaatctcacccaacaagcacttgtagccgtggataacaacacccctatcacccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaccagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattttgtgggaatttgtgatgttgagatttcatgtccctgatgtgtgttggtcaaggcaagaatacttaaatctgttagcttataagaatcttagccttttttcgttgcttagttacgttggtactagcacttttttatgtaccctttgggggaataaccgattcgaaatttgggaagcaactatataaagggggctatggcagtagcatgtttcagtctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50217" stop="51875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50517" g_stop="50573" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51576" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="687" r_length="630" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E693554" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50517" e_stop="50573"/>
          <exon e_start="50958" e_stop="51576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAA---T-T----A---GTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAGCATGTTTCAGTCTCTAC</genome_strand>
        <mrna_strand>CTTGGTCCTCTGTATCCATTCCCCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCCTACTCCGAGATTATCAATGAAAGTGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGGTTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACCCCTATCACCCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTACCAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTTTGTGGGAATTTGTGATGTTGAGATTTCATGTCCCTGATGTGTGTTGGTCAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCTTTTTTCGTTGCTTAGTTACGTTGGTACTAGCACTTTTTTATGTACCCTTTGGGGGAATAACCGATTCGAAATTTGGGAAGCAACTATATAAAGGGGGCTATGGCAGTAGCATGTTTCAGTCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302589" ref_strand="+" ref_description="SGN-E302589 [cLEX-1-A15](-)">
      <seq>ggtcctctgtatccattcaccgctggtgtctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50220" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50520" g_stop="50573" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51555" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="652" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="673"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E302589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50520" e_stop="50573"/>
          <exon e_start="50958" e_stop="51555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</genome_strand>
        <mrna_strand>GGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228401" ref_strand="+" ref_description="SGN-E228401 [cLED-3-H24]">
      <seq>tctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcactgttttatgtaacgaataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50248" stop="51804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50548" g_stop="50573" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51504" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="573" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E228401" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50548" e_stop="50573"/>
          <exon e_start="50958" e_stop="51504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACA</genome_strand>
        <mrna_strand>TCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTGTTTTATGTAACGAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231494" ref_strand="+" ref_description="SGN-E231494 [cLED-4-M2]">
      <seq>tctttgtggcattgatgatggcccagattgaggttctgaggaagaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50248" stop="51797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50548" g_stop="50573" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50958" g_stop="51497" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="566" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E231494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50548" e_stop="50573"/>
          <exon e_start="50958" e_stop="51497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTGTGGCATTGATGATGGCCCAGGTTAGCATATCTATTTTATTCTTGAGCCATGGAAGTATTGCATGATATTTCAGGATATGCTTGAAGTGCTCTTTTGCTCTCTCTTCCTTTTTAGATAATAATACCTACTCTTTTGCTTTTGTGTCTTGGATTTGATACTTTTAGAACATTCAATGCAAATGGTGTTAGCATTGCCACTTTGAACATCTGAATCTTGAATTGAGAAAGTTTGTTTTTTGAAGGAACTTTTGCCTTGGAACTCCAGATAAATCTTACTATTTTTTTTTGAGTTCTATAAAATCACAATGGGAAGGTTCCCATATGATGAAAGATTAGGTGAACATAAATGTCCTTTTCTCTTGACATTCCTTGTCATCTAACATATTGTCTTTGGAAAATAAACAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACG</genome_strand>
        <mrna_strand>TCTTTGTGGCATTGATGATGGCCCAG................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571650" ref_strand="+" ref_description="SGN-E571650 [15383]">
      <seq>aggattgatgatggccagattgaggtctgaggaaaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagctgtggataataacgcccctatcaatcaagatctcatcagcaacttccttgcagatcctgtgcatggagctattaaagtctgtgctgaactgagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctggcaattaagggctttacgggtgggaattttgtggaattgtgaggtttagattttattttgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagcctttttcgttgcttagtttacgccggtactagcactttctttatgtaacctttttctgaataacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50655" stop="51796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50958" g_stop="51489" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="537" r_length="519" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E571650" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50958" e_stop="51489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAG-TTACGTTGGTACTAGCACTTTTTT</genome_strand>
        <mrna_strand>ATTGAGG-TCTGAGGAA-AAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAACGCCCCTATCAATCAAGATCTCATCAGCAACTTCCTTGCAGATCCTGTGCATGGAGCTATTAAAGTCTGTGCTGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGGCAATTAAGGGCTTTACGGG------TG-G-G-AATTTTGTG-GAATT-GTGAGGTTTAGATTTTATTTTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCC-TTTTTCGTTGCTTAGTTTACGCCGGTACTAGCACTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579674" ref_strand="+" ref_description="SGN-E579674 [86805]">
      <seq>gaggttctgaggaagaaaggtcactcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctctacaacagcacgtttaggttccaggaagtgggcccctcgatttgattacaatctcacccagcaagcacttgtagctgtggataataacgcccctatcaatcaagatctcatcagcaacttccttgcagatcctgtgcatggagctattaaagtctgtgctgaactgagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctggcaattaagggctttacgggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50661" stop="51639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50961" g_stop="51341" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E579674" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50961" e_stop="51341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCA</genome_strand>
        <mrna_strand>GAGGTTCTGAGGAAGAAAGGTCACTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCTACAACAGCACGTTTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAGCAAGCACTTGTAGCTGTGGATAATAACGCCCCTATCAATCAAGATCTCATCAGCAACTTCCTTGCAGATCCTGTGCATGGAGCTATTAAAGTCTGTGCTGAACTGAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGGCAATTAAGGGCTTTACGGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312414" ref_strand="+" ref_description="SGN-E312414 [cTOA-5-P8]">
      <seq>agaaaggacattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50674" stop="51699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50974" g_stop="51399" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E312414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50974" e_stop="51399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTG</genome_strand>
        <mrna_strand>AGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714686" ref_strand="+" ref_description="SGN-E714686 [FB12AF03]">
      <seq>ggtcattcttactccgagattatcaatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50679" stop="51764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50979" g_stop="51464" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="502"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E714686" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50979" e_stop="51464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTA</genome_strand>
        <mrna_strand>GGTCATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714250" ref_strand="+" ref_description="SGN-E714250 [FB10DF12]">
      <seq>ctatctatgaaagcgtcatcgagtctgtagattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50699" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50998" g_stop="51555" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E714250" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50998" e_stop="51555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</genome_strand>
        <mrna_strand>CTATCTATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424306" ref_strand="+" ref_description="SGN-E424306 [STM-43-I22]">
      <seq>ttttttttcccaatcacttctctgttattcagcaaaaggttacataaagaaagtgctagtaccgacgtaactaagcaacgaaaaaggctaagattcttataagctaacagatttaagtattcttgccttcaccaacacacatcaacaatatgaaatctcaacctcacaattacacaaaattctaactcgctcacagagtgacccgtaaatcccttaattgccagattgcctgagctcagggcggacaaaatcagcatctgctgttacagaaatatcaactgtgggtctcagttcagcacatactttaatagctccatggacgggatctgcaaggaagttgctgatgagatctcgattgataggggcattattatccacagctacaagtgcttgctgggtgaggttgtaatcaaatagaggggcccacttcttggaacctaaacgtgccgttgtagagcaattgtcaaccatgaatgatattcaccgagcgtgcatgaacggattcaatgaatctacagactcgatgacactttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="51796" stop="50702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51496" g_stop="51002" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="538" r_length="500" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E424306" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51496" e_stop="51002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACATAAA-AAAGTGCTAGTACCAACGTAACTAAACAACGAAAAGCGGCTAAGATTCTTATAAGCTAACAGATTTAAGTATTCTTGCCTTCACCAACACACATCAACAATATGAAATCTCAACATCACTAATTCTC---A--CTTGCTCGCTCACAAAGTGACCCGTAAAGCCCTTAATTGACAGATTGCCTGAGCTCAGGGCGGACAAAATCAGCATCTGCTGTTACAGAAATATCAACTGTGGGTCTTAGTTCAGCACACACTTTAATAGCTCCATGCACGGGATCTGCAAGGAAGTTGCTGATGAGATCACGGTTGATAGGCGTGTTGTTATCCACGGCTACAAGTGCTTGTTGGGTGAGATTGTAATCAAATCGAGGGGCCCACTTCCTGGAACCTAGACGTGCTGTTGTTGAGCAATTGTCAACCATGAATGATACTCCACGAGCGTGCATAAACGGATTCAAAGAATCTACAGACTCGATGACGCTTTCATTG</genome_strand>
        <mrna_strand>GTTACATAAAGAAAGTGCTAGTACCGACGTAACTAAGCAACGAAAA-AGGCTAAGATTCTTATAAGCTAACAGATTTAAGTATTCTTGCCTTCACCAACACACATCAACAATATGAAATCTCAACCTCACAATTACACAAAATTCTAACTCGCTCACAGAGTGACCCGTAAATCCCTTAATTGCCAGATTGCCTGAGCTCAGGGCGGACAAAATCAGCATCTGCTGTTACAGAAATATCAACTGTGGGTCTCAGTTCAGCACATACTTTAATAGCTCCATGGACGGGATCTGCAAGGAAGTTGCTGATGAGATCTCGATTGATAGGGGCATTATTATCCACAGCTACAAGTGCTTGCTGGGTGAGGTTGTAATCAAATAGAGGGGCCCACTTCTTGGAACCTAAACGTGCCGTTGTAGAGCAATTGTCAACCATGAATGATATTCACCGAGCGTGCATGAACGGATTCAATGAATCTACAGACTCGATGACACTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711947" ref_strand="+" ref_description="SGN-E711947 [FB03BH03]">
      <seq>tatattctttgaatccgtttatgcacgctcgtggagtatcattcatggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctcgatttgattacaatctcacccaacaagcacttgtagccgtggataacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcagtaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50725" stop="51858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51025" g_stop="51558" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="559"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E711947" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51025" e_stop="51558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTA</genome_strand>
        <mrna_strand>TATATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348016" ref_strand="+" ref_description="SGN-E348016 [cTOF-31-K9]">
      <seq>atggttgacaattgctcaacaacagcacgtctaggttccaggaagtgggcccctctttgattacaatctcacccaacaagcacttgtagccgtgggtaacaacacgcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcagntagcatgtttcagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50769" stop="51871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51069" g_stop="51568" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="512"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E348016" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51069" e_stop="51568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAG-TAGCATGTTTCA</genome_strand>
        <mrna_strand>ATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTC--TTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGGTAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGNTAGCATGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287827" ref_strand="+" ref_description="SGN-E287827 [cLES-19-L17]">
      <seq>aacaacagcacgtctaggttccaggaagtgggcccctcgatgtgattacaagctgacccaacaaggacgggtagccggggataacaacacgcctagcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaaaatttgggaacccttgtagcaactataaaatgtgggttatggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50786" stop="51855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51086" g_stop="51555" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="480"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E287827" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51086" e_stop="51555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</genome_strand>
        <mrna_strand>AACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATGTGATTACAAGCTGACCCAACAAGGACGGGTAGCCGGGGATAACAACACGCCTAGCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223019" ref_strand="+" ref_description="SGN-E223019 [cLEL-14-B16](-)">
      <seq>gcctatcaaccgtgatctcatcagcaacttccttgcagatcccgtgcatggagctattaaagtgtgtgctgaactaagacccacagttgatatttctgtaacagcagatgctgattttgtccgccctgagctcaggcaatctgtcaattaagggctttacgggtcactttgtgagcgagcaagtgagaattagtgatgttgagatttcatattgttgatgtgtgttggtgaaggcaagaatacttaaatctgttagcttataagaatcttagccgcttttcgttgtttagttacgttggtactagcacttttttatgtaacgaataacagattcaacatttgggaacccttgtagcaactaagttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="+" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="50876" stop="51836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51176" g_stop="51535" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="369" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="+" ref_id="SGN-E223019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51176" e_stop="51535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACT</genome_strand>
        <mrna_strand>GCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAACATTTGGGAACCCTTGTAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437591" ref_strand="+" ref_description="SGN-E437591 [cSTA-4-E10]">
      <seq>ttacttttggaaggcgggaaaaagactccccatactgtatttcacagcaaagcctaaaacttctttgacacacaacaatgggggatcttcattctgcagaagaacatggaaatactcaaatctcaactgtcatttttgatttggatggtacccttttgagtacagagcacttgacaaaggaaattctgaaggaatttctggctggatatgggaaggtgccagataaggagaaggaaaagaaaagattgggcatggcccagaaagagtacgctattggcattgtcagtgattacgacctccctatcatgcccgatcagtatgtccaagcagtcatgcccttttatcatgacttgtggttgcaagcgaaagcacttcctggtgctaatcgccttataagacatctccataagcatggagttccctttgcccttgcttcaaattccaaaaggaaaaacatagatgggaaagtctctctccaagaaggttggaaagaatgtttttccgtaattcttggaagtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="60113" stop="57304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59813" g_stop="59781" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59780" i_stop="59684" i_length="97">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59683" g_stop="59552" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="165" r_length="132" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59551" i_stop="58935" i_length="617">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58934" g_stop="58748" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="352" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58747" i_stop="57753" i_length="995">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57752" g_stop="57622" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="483" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E437591" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59813" e_stop="59781"/>
          <exon e_start="59683" e_stop="59552"/>
          <exon e_start="58934" e_stop="58748"/>
          <exon e_start="57752" e_stop="57622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTTCGGAAGGCGGGAAAAAGAATCCCTGTGTAAGCACCTTTGCCCAATTGCAAATTGGAATTTGATCCTTTCGTTAAAATATCTCTTTAAAATCCTAAACATTCTATGTTATTTTTCTGCTCATTCATCAGATTTCACAGCAAAGACTTAAACTTCTCTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAAAAACTCAAATTTCAGCTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAGGTCCTCTTTTTCCACTCCCTTTTTAGTTTTATATTTTTCTGGATTTGTAGCATTTGTGTTTTGGGATCTAGTTTTTTTTTTTGTTACTATAAGTTCAACTGAATCGTGTTTTTGACTCTTGCAATGTATGAATATAGTCCCTGTTTTTAAGGTGTTTGAGTCAGCTTGCGCGTAGTACTTATATCTCTGATGTCATTGTCACCTCCCACCAGCAACCTGTATTAGGTATGAGGTAACTCTGTCCACCAAGTTTATGACATATGAGAAGAAATTAGCTAGTGTTTTTGTCTTTGCTTGGATTTGAATATGAGACCATATGATTTTCAGTCTACTTTATTGACGACCACTAGATCACACCTTTGGGTGCCTCTATAAGTACCATTTTGTGGGATGCAATTTAAGTGGGATGAAGTTTAAGAAAGAAGGATTGAGTTATAAAACTCATAATCTAATTAGGCCCATAGAAACAATTTTAAAAGTGAAGTGCATATGATATGTTAAGGATGCGTATGCACCACGTTACCCGGACTCCACTTGTGGGATTAAACTTGGGTATGTTGTTGTATGCATCTCACTCTGAGCCCGGTGATACTAAATCTTGGATATGTTTGTTTTAGAGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATATGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGGATGGCCCAGAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCACGCCCGATCAGTATGTCCAAGCTGTCATGCCCTTTTATCATGACTTGTAAGTGTTTTTTGAACCATGTCTCTCAATATATTAGTTGTTTCTTTTTATTTTGGATATTCACTTGTAAACTACTATAAAGCATAATTGGTTGACACTTGACAGCGGCAGATCTAGTGCATTAGTTATGGATTTGTCCAAATAGAGACGGACCTACAACATAACTTATGGGTTCACGAAAACTCAGTGATTTTTGCTCAAACCCGGTATATGTATCAATCCACTAAATATTGGACTGTGAACCCAATTATTATTGTATATTAACTTGAGGTCACTGTAGGAATCCATAAACTTCAAATCTTGGATCTGTCTTGGAGTCCAAACTAATACCTTTGGTTCAAACTCAATATATGTGTAAAAAGTCCATGAAATAGTATAAAACATAGTATCCGAACACAATAAATTAATAGGTTGAGGTAGAATTCAGAGCTCAAAGCCATTAAGTCCAAATCCTAGATCCACCTATGTTGTTTGATGTCATCTTCTTACAAAATCATCATATTTGTGGATTTCATTGTACTTCATATTGGATAGTAACATGGTTATTGATCCTTACATTCTCCTATTGCTCTTACATGTTGGATATAAGTCTTCTTCATGTTGCTTCAAGCCTTCAAGAGCACATGCATCTTCGCGTTTTCGTACACTGTTACAAAGTTGTATTCTTAATGTCTTCGAGTGAAATGTTCTGTGATAATGTCTCCGATTCAAGTTGATGACATGATGAGAATGAAATACTTGTTGCCATGACATCTTTAATAATTTGATTAGCCACACAATATTCATTCTCTGCTCTGCATAACTAACAGAATCTAGTAAAACACTATGCGCTAGTTGCCTCCACTTGTCTATAATTTTGCACATCATCTCACATTGTATTAACGGTGTGATTAATGAGCTAGGATCAGCTTCCCTGCACTGATTTATGACATTCAATGATTAAGCAATTGGCAACAGAGTATTCATGTATAGTTTTTTTTCCTGTTTTGTTGCAGGTGGTTGCAAGCAAAAGCACTTCCTGGTGCTAATCGCCTTATAAGACATTTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATAAGAAAGTCTCTCTCCAAGAAG</genome_strand>
        <mrna_strand>TTACTTTTGGAAGGCGGGAAAAAGACTCCCCAT.................................................................................................ACTGTATTTCACAGCAAAGCCTAAAACTTCTTTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAAATACTCAAATCTCAACTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATATGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGCATGGCCCAGAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCATGCCCGATCAGTATGTCCAAGCAGTCATGCCCTTTTATCATGACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGCAAGCGAAAGCACTTCCTGGTGCTAATCGCCTTATAAGACATCTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATGGGAAAGTCTCTCTCCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366830" ref_strand="+" ref_description="SGN-E366830 [cLPT-6-I16]">
      <seq>atcactcaaaaaggaagaagaagaagaagacaagaggatattggaatgtagaacaataatatttggtgttatacttggaataccgaataattactttcggaaggcgggaaaaagaatccctccccatattgtcaaagccttaaacttctctgacacacaacaatgggggatcttcattctgcagaagaacatggaataactcaaatttcagctgtcatttttgatttggatggtacccttttgagtacagagcacttgacaaaggaaattctgaaggaatttctggctggatacgggaaggtgccagataaggagaaggaaaagaaaagattggggatggcccacaaagagtacgctattggcattgtcagtgattacgacctccctatcacgcccgatcagtatgtccaagctgtcatgcccttttatcatgacttgtggttgcaagcaaaagcgcttcctggtgctaatcgccttataagacatttccataagcatggagttccctttgcccttgcttcaaattccaaaaggaaaaacatagataagaaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="60182" stop="57333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59849" g_stop="59781" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="123" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59780" i_stop="59679" i_length="102">
            <donor d_prob="0.898" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59678" g_stop="59552" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="250" r_length="127" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59551" i_stop="58935" i_length="617">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58934" g_stop="58748" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="437" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58747" i_stop="57753" i_length="995">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57752" g_stop="57633" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="557" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E366830" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59849" e_stop="59781"/>
          <exon e_start="59678" e_stop="59552"/>
          <exon e_start="58934" e_stop="58748"/>
          <exon e_start="57752" e_stop="57633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATATTTGGCGTTATACTTGGAATACCGAATAATTACTTTCGGAAGGCGGGAAAAAGAATCCCTGTGTAAGCACCTTTGCCCAATTGCAAATTGGAATTTGATCCTTTCGTTAAAATATCTCTTTAAAATCCTAAACATTCTATGTTATTTTTCTGCTCATTCATCAGATTTCACAGCAAAGACTTAAACTTCTCTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAAAAACTCAAATTTCAGCTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAGGTCCTCTTTTTCCACTCCCTTTTTAGTTTTATATTTTTCTGGATTTGTAGCATTTGTGTTTTGGGATCTAGTTTTTTTTTTTGTTACTATAAGTTCAACTGAATCGTGTTTTTGACTCTTGCAATGTATGAATATAGTCCCTGTTTTTAAGGTGTTTGAGTCAGCTTGCGCGTAGTACTTATATCTCTGATGTCATTGTCACCTCCCACCAGCAACCTGTATTAGGTATGAGGTAACTCTGTCCACCAAGTTTATGACATATGAGAAGAAATTAGCTAGTGTTTTTGTCTTTGCTTGGATTTGAATATGAGACCATATGATTTTCAGTCTACTTTATTGACGACCACTAGATCACACCTTTGGGTGCCTCTATAAGTACCATTTTGTGGGATGCAATTTAAGTGGGATGAAGTTTAAGAAAGAAGGATTGAGTTATAAAACTCATAATCTAATTAGGCCCATAGAAACAATTTTAAAAGTGAAGTGCATATGATATGTTAAGGATGCGTATGCACCACGTTACCCGGACTCCACTTGTGGGATTAAACTTGGGTATGTTGTTGTATGCATCTCACTCTGAGCCCGGTGATACTAAATCTTGGATATGTTTGTTTTAGAGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATATGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGGATGGCCCAGAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCACGCCCGATCAGTATGTCCAAGCTGTCATGCCCTTTTATCATGACTTGTAAGTGTTTTTTGAACCATGTCTCTCAATATATTAGTTGTTTCTTTTTATTTTGGATATTCACTTGTAAACTACTATAAAGCATAATTGGTTGACACTTGACAGCGGCAGATCTAGTGCATTAGTTATGGATTTGTCCAAATAGAGACGGACCTACAACATAACTTATGGGTTCACGAAAACTCAGTGATTTTTGCTCAAACCCGGTATATGTATCAATCCACTAAATATTGGACTGTGAACCCAATTATTATTGTATATTAACTTGAGGTCACTGTAGGAATCCATAAACTTCAAATCTTGGATCTGTCTTGGAGTCCAAACTAATACCTTTGGTTCAAACTCAATATATGTGTAAAAAGTCCATGAAATAGTATAAAACATAGTATCCGAACACAATAAATTAATAGGTTGAGGTAGAATTCAGAGCTCAAAGCCATTAAGTCCAAATCCTAGATCCACCTATGTTGTTTGATGTCATCTTCTTACAAAATCATCATATTTGTGGATTTCATTGTACTTCATATTGGATAGTAACATGGTTATTGATCCTTACATTCTCCTATTGCTCTTACATGTTGGATATAAGTCTTCTTCATGTTGCTTCAAGCCTTCAAGAGCACATGCATCTTCGCGTTTTCGTACACTGTTACAAAGTTGTATTCTTAATGTCTTCGAGTGAAATGTTCTGTGATAATGTCTCCGATTCAAGTTGATGACATGATGAGAATGAAATACTTGTTGCCATGACATCTTTAATAATTTGATTAGCCACACAATATTCATTCTCTGCTCTGCATAACTAACAGAATCTAGTAAAACACTATGCGCTAGTTGCCTCCACTTGTCTATAATTTTGCACATCATCTCACATTGTATTAACGGTGTGATTAATGAGCTAGGATCAGCTTCCCTGCACTGATTTATGACATTCAATGATTAAGCAATTGGCAACAGAGTATTCATGTATAGTTTTTTTTCCTGTTTTGTTGCAGGTGGTTGCAAGCAAAAGCACTTCCTGGTGCTAATCGCCTTATAAGACATTTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATAAGAAAGTCTC</genome_strand>
        <mrna_strand>AATAATATTTGGTGTTATACTTGGAATACCGAATAATTACTTTCGGAAGGCGGGAAAAAGAATCCCTCC......................................................................................................CCATATTGTCAAAGCCTTAAACTTCTCTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAATAACTCAAATTTCAGCTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATACGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGGATGGCCCACAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCACGCCCGATCAGTATGTCCAAGCTGTCATGCCCTTTTATCATGACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGCAAGCAAAAGCGCTTCCTGGTGCTAATCGCCTTATAAGACATTTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATAAGAAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253311" ref_strand="-" ref_description="SGN-E253311 [cLEG-26-H3]">
      <seq>ctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattattttctcttttttcatttagtttggagctgagcatatatgctactctatgttggtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62969" stop="60522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62669" g_stop="62621" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="198" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="254" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60821" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="652" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E253311" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62669" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATTATTTTCTCTTTTTTCATTTAGTTTGGAGCTGAGCATATATGCTACTCTATGTTGGTGCAT</genome_strand>
        <mrna_strand>CTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATTATTTTCTCTTTTTTCATTTAGTTTGGAGCTGAGCATATATGCTACTCTATGTTGGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404068" ref_strand="+" ref_description="SGN-E404068 [PPC-12-H5]">
      <seq>ggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctgtcacccttattatctcaatgtcactaaatttccattattctctccttttttcatttagtttgaagctgagcatatttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62706" stop="60535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62406" g_stop="62363" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="100" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60835" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="485" r_length="385" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E404068" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62406" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATTATTTTCT-CTTTTTTCATTTAGTTTGGAGCTGAGCATATATGCTACT</genome_strand>
        <mrna_strand>GGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTGTCACCCTTATTATCTCAATGTCACTAAATTTCCATTATTCTCTCCTTTTTTCATTTAGTTTGAAGCTGAGCATATTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589723" ref_strand="-" ref_description="SGN-E589723 [43303]">
      <seq>gcatatcagtcagctacaaactgctgcggaggcggaattaccacccactcatcccattcgtctgggactggctttgaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatctggcaaaacaggccttcgatgaagcaatatctgagctggacagcctgaatgaggattcctacaaagacagtaccttgattatgcagcttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacaccaagggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctattctcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatgtcactaaatttccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63035" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62730" g_stop="62621" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="120" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="269" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="325" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60880" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="664" r_length="339" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E589723" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589723" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62730" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTAC-AACTGCTGCGGAGGCGGAATTAGCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATT-TCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATTA</genome_strand>
        <mrna_strand>TCAGCTACAAACTGCTGCGGAGGCGGAATTACCACCCACTCATCCCATTCGTCTGGGACTGGCTTTGAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTGGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGACAGCCTGAATGAGGATTCCTACAAAGACAGTACCTTGATTATGCAGCTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACACCAAGGGGG-TGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTCTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATGTCACTAAATTTCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608346" ref_strand="+" ref_description="SGN-E608346 [24331]">
      <seq>aggttgcagagctttcattgaaagcatatcagtcagctacaactgctgcggaggcggaattaccacccactcatcccattcgtctgggactggctttgaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatctggcaaaacaggccttcgatgaagcaatatctgagctggacagcctgaatgaggattcctacaaagacagcaccttgattatgcagcttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggtttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctgtcacccttattatctcaatgtcactaaatttccattaaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63035" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62730" g_stop="62621" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="142" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="291" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="347" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="684" r_length="337" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E608346" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62730" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTACAACTGCTGCGGAGGCGGAATTAGCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>TCAGCTACAACTGCTGCGGAGGCGGAATTACCACCCACTCATCCCATTCGTCTGGGACTGGCTTTGAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTGGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGACAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAGCTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGG-TTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTGTCACCCTTATTATCTCAATGTCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254876" ref_strand="+" ref_description="SGN-E254876 [cLEG-33-J20]">
      <seq>gcacccactcatcccattcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagataccttcnttattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63000" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62700" g_stop="62621" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61387" i_length="976">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.369" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61386" g_stop="61334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="282" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="623" r_length="341" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="638"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E254876" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62700" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61386" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATA-CTTC--TATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACCTTCNTTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260975" ref_strand="+" ref_description="SGN-E260975 [cLEG-55-J18]">
      <seq>gcacccactcatcccattcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63000" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62700" g_stop="62621" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61387" i_length="976">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.369" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61386" g_stop="61334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="282" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="620" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="633"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E260975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62700" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61386" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349636" ref_strand="+" ref_description="SGN-E349636 [cTOS-1-P2]">
      <seq>tcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62983" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62683" g_stop="62621" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="212" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="606" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="620"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E349636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62683" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>TCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354277" ref_strand="+" ref_description="SGN-E354277 [cTOS-16-N19]">
      <seq>tcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62983" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62683" g_stop="62621" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="212" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="268" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="606" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="620"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E354277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62683" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>TCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715338" ref_strand="+" ref_description="SGN-E715338 [FB14AA05]">
      <seq>cttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62801" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62501" g_stop="62363" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="195" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="533" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E715338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62501" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>CTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715339" ref_strand="+" ref_description="SGN-E715339 [FB14AA06]">
      <seq>cttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62801" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62501" g_stop="62363" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="195" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="533" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E715339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62501" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>CTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714444" ref_strand="+" ref_description="SGN-E714444 [FB11BH04]">
      <seq>gcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggagaatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62798" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62498" g_stop="62363" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="192" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="530" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="545"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E714444" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62498" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>GCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGAATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466317" ref_strand="+" ref_description="SGN-E466317 [cPRO-23-J8]">
      <seq>cttcgatgaagcaatatctgagctggacagcctgaatgaggattcctacaaagacagcaccttgattatgcagcttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctgtcnaccttattatctcaatgtcactaaatttccattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62787" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62487" g_stop="62363" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="181" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="519" r_length="338" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="529"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E466317" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62487" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>CTTCGATGAAGCAATATCTGAGCTGGACAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAGCTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTGTCNACCTTATTATCTCAATGTCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598093" ref_strand="+" ref_description="SGN-E598093 [73761]">
      <seq>cttgattattgcagcttctaagggacaacctcaccttgttggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatgtcacttaatttccattaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62727" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62427" g_stop="62363" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="123" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="461" r_length="338" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="472"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E598093" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62427" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTA-TGCAACTTCTAAGGGACAACCTCACCTTG-TGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>CTTGATTATTGCAGCTTCTAAGGGACAACCTCACCTTGTTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATGTCACTTAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218151" ref_strand="+" ref_description="SGN-E218151 [cLEL-23-H16](-)">
      <seq>acttctgatcttccagaggatgctgatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatttccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62687" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62387" g_stop="62363" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61387" i_length="976">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.369" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61386" g_stop="61334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="78" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60881" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="416" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="433"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E218151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62387" e_stop="62363"/>
          <exon e_start="61386" e_stop="61334"/>
          <exon e_start="61218" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>ACTTCTGATCTTCCAGAGGATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607622" ref_strand="+" ref_description="SGN-E607622 [23591]">
      <seq>ggggtctgtcgtgtccagattcttcacatgtaaattgtttgtcctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagaataattgctggtctataggtggtttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatgtcactaaatttccattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="61411" stop="60580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61112" g_stop="60881" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="250"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E607622" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61112" e_stop="60881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCTGTCGTGT-CAGATTCTTCACTTGTTAATTGGTTGT-CTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAG-ATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</genome_strand>
        <mrna_strand>GGGGTCTGTCGTGTCCAGATTCTTCACATGTAAATTGTTTGTCCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGAATAATTGCTGGTCTATAGGTGG-TTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATGTCACTAAATTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589171" ref_strand="+" ref_description="SGN-E589171 [42739]">
      <seq>cccattcgtctgggactggctttgaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatctggcaaaacaggccttcgatgaagcaatatctgagctggacagcctgaatgaggattcctacaaagacagcaccttgattatgcagcttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttcctctctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctgtcacccttattatctcaatgtcactaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62988" stop="60586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62688" g_stop="62621" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="217" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="273" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60886" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="606" r_length="333" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E589171" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62688" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTT</genome_strand>
        <mrna_strand>CCCATTCGTCTGGGACTGGCTTTGAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTGGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGACAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAGCTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCTCTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTGTCACCCTTATTATCTCAATGTCACTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302792" ref_strand="+" ref_description="SGN-E302792 [cLEY-2-E1]">
      <seq>agatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttntatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctctcacccttattatctcaatatcactaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62942" stop="60587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62642" g_stop="62621" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="171" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="227" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60887" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="559" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E302792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62642" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATT</genome_strand>
        <mrna_strand>AGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTNTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253317" ref_strand="-" ref_description="SGN-E253317 [cLEG-26-J3]">
      <seq>tgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttagataattgctggtctataggtggttttatttttcagatgactgccgcagccaaatggaggatatcagctatttgcttgtcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="61670" stop="60616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61370" g_stop="61334" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61218" g_stop="60916" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="340" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E253317" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253317" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61370" e_stop="61334"/>
          <exon e_start="61218" e_stop="60916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCT</genome_strand>
        <mrna_strand>TGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229566" ref_strand="+" ref_description="SGN-E229566 [cLEL-4-D11](-)">
      <seq>cttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62694" stop="60695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62394" g_stop="62363" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="88" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60982" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="325" r_length="237" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E229566" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62394" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATA</genome_strand>
        <mrna_strand>CTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354831" ref_strand="-" ref_description="SGN-E354831 [cTOS-19-F13]">
      <seq>attagcacccactcatcccattcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgtatagtgagttgtttcagtctttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63004" stop="60695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62704" g_stop="62621" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="233" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="289" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="60999" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="509" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="530"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E354831" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354831" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62704" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAG</genome_strand>
        <mrna_strand>ATTAGCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217274" ref_strand="+" ref_description="SGN-E217274 [cLEL-21-P19](-)">
      <seq>gcctgaatgaggattcctcaaaagacagcaccttgattatgcaaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgaccacaaggatacgccaagggggatgttagtttgttaagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacttgttaattggttgtctgcaactcagtgtgtaatttgtatccctgtgctatttccgttctccgcatagttagttgtttcagtctttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62758" stop="60695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62458" g_stop="62363" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="153" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61218" g_stop="60999" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="373" r_length="220" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="392"/>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E217274" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62458" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="60999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGC-AACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAG</genome_strand>
        <mrna_strand>GCCTGAATGAGGATTCCTCAAAAGACAGCACCTTGATTATGCAAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACCACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGCATAGTTAGTTGTTTCAGTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596583" ref_strand="-" ref_description="SGN-E596583 [40068]">
      <seq>ttgaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatctggcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcagcttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgaagatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatggttagaactactatgtgtatttggaggtgtgaggacaaggatacgccaaggggggtgtttgtttgttgagtcttagtagatacttctattatgggtctgtcgtgtcagattcttcacatgttaataggttgtctgcaactcagtgtgtaatttgtatcccctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62967" stop="60740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62667" g_stop="62621" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="196" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61389" g_stop="61334" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="252" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="61040" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="432" r_length="180" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E596583" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62667" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61389" e_stop="61334"/>
          <exon e_start="61218" e_stop="61040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTAT-CCCTGTG</genome_strand>
        <mrna_strand>TTGAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTGGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAGCTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATGGTTAGAACTACTATGTGTATTTGGAGGTGTGAGGACAAGGATACGCCAAGGGGGGTGTTTGTTTGTTGAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACATGTTAATAGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263532" ref_strand="+" ref_description="SGN-E263532 [cLEG-60-C18]">
      <seq>gcacccactcatcccattcgtctgggactggctttaaatttctctgttttctactatgagatcatgaattcacctgaaagggcatgccatcttgcaaaacaggccttcgatgaagcaatatctgagctggatagcctgaatgaggattcctacaaagacagcaccttgattatgcaacttctaagggacaacctcaccttgtggacttctgatcttccagaggatgctgatgcccaaaagggagatgccacaaacaaagctggtggaggtgaagatgcagagtgaatgggcctaatagttagaactactatgtgtatttggaggtgtgacgacaaggatacgccaagggggatgttagtttgttaagtcttantagatacttctattatgggtctgtcgtgtcagattcttcacttgtgaattggctgtctgcaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0056M08-sZjQo/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0056M08.1" temp_strand="-" temp_description="C07HBa0056M08.1  AC212620.1 htgs_phase:1 submitted_to_sgn_as:gi|158262116|gb|AC212620.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0056M08, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63000" stop="60763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62700" g_stop="62621" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62511" g_stop="62363" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="229" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62362" i_stop="61387" i_length="976">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.369" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61386" g_stop="61334" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="282" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61218" g_stop="61063" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="438" r_length="156" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0056M08.1" gen_strand="-" ref_id="SGN-E263532" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0056M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62700" e_stop="62621"/>
          <exon e_start="62511" e_stop="62363"/>
          <exon e_start="61386" e_stop="61334"/>
          <exon e_start="61218" e_stop="61063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAGGTTTGTCTTTTGTATTTTCATCTTCTTGTAGCTGTCCATACCTTTTTTTAATCGTTGTGTCTGTACTTGTTTCTAGGCTGAGCTGATTATAATCTGTTTCTTTCTCCAGGGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTGGTATGCTTTGACACTCATATCCTAATATCTTTTGACACCTTGGCGTTTGTATAATCTAGAGTTTTCCTGATGTTCATAATTTCCTGGTCGACGGTACTTTATTTATTTACTTATTTGTTTCGTATAATTATCTCTTTAGCTTGAAATTACTATTCTCAGGCTTGGTTGAGATCTTTTGCTGGTCTTTTCCGCTAGTAGTTGCTATAATTCTTCAGTGGTTTTGATAGCTTAATCACATGTGAGATGTCTACAGAAAAAACTAATTTGGTTCTACAACCTTTTAGATAAGCATTAAGAGAACTGCCCCAAGGGCTTTGGTCTAAATGTAAAGAAAGAGGATAGCATGTGATATGCGAGTTGGGCAGTCGTCATAGGCTCAAACCCTGACACATAGAAATCTTGTATGTAGTAGAAGGATGGCCCATTTTTAAATGAATTTTGAATTGTGTGCCATTGCCTTCCCGAGGTATCTTGATTTTCAGAAAGGAAACAAAGAAGATGATATTGTAATACTAAGTGCTAACTCACTATTTTCAAAAAATAAGTTCAGGGTGATAAAGAAATGTGGCATTGCTTCTTCCTGCAAGGAGAAAAAAGGAGTCAGGCAAGGAAGTACTAGTTCTTGAAGGGTTTTTCCTTATGTCATGGGTTTCTTTTCTTGAAATAGGATTAACCATGAAGTTCTATTGGTGTTACCTTCAGCTAAATCTTGGGTATCTGCTTGTAGTTTGACTGTGTACTTGTACAATTTTTTCAGTTAGTTTACATGTGCCCTTCAATGAAAATGCTATTCCCCAGTGATCAATTATTTCCTTTGGAAATATATGATAAATGCAGTGCAAGATAGATTGACAAGGCATAAAAACGTGATAACAATAGCAGTATTAGGGGGTTGAGCTAGATGAATGGATTGTCTAATTTACTGAATCTGAGGGAAAAACTAACTTTTACTAATTTTGTTGCCCTTTCACAGAAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAGGTAGGTTCTTTACATCCAGTCTCCTTCCTTTGAGTCGATTTTAGATTTTTCTAGAATGGTAGTAATTCAATTTTGTAGTCATCCAAATAATAATATTCTTTTTGTGTTCTTGCAGTGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTC</genome_strand>
        <mrna_strand>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG.............................................................................................................GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG...................................................................................................................TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTANTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTGAATTGGCTGTCTGCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>212</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="12972" PGL_stop="11464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12972" e_stop="12788"/>
            <exon e_start="11964" e_stop="11658"/>
            <exon e_start="11551" e_stop="11464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.673" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12972" e_stop="12788" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12787" i_stop="11965" i_length="823"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11964" e_stop="11658" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.673">
            <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11551" e_stop="11464" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12972" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12949" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12941" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12941" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12941" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12940" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12940" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12940" stop="12788"/>
              <exon start="11964" stop="11769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12939" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12939" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12939" stop="12788"/>
              <exon start="11964" stop="11861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12938" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12938" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12938" stop="12788"/>
              <exon start="11964" stop="11687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12937" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12937" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12932" stop="12788"/>
              <exon start="11964" stop="11713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12932" stop="12788"/>
              <exon start="11964" stop="11726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12931" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12931" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12931" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12929" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12929" stop="12788"/>
              <exon start="11964" stop="11839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12927" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12924" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12920" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12911" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12871" stop="12788"/>
              <exon start="11964" stop="11658"/>
              <exon start="11551" stop="11468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11951" stop="11658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11887" stop="11658"/>
              <exon start="11551" stop="11502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAGCACATTCACACAGAACCAGAGAAGCAAAAAGGGAGAGAATAGAGCAAAATCTCTCTCTGTTTTCACTACAAAAAATCTTTGATTTCAATTTGAGAGAGATCGGAAATGGCTTCTTCCAAAGAACGTGAGAACTTCGTCTACGTCGCTAAGCTCGCTGAGCAAGCCGAACGCTACGATG : AAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT : GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACAAGAAGGAGGTTGCTGAGCTTTCATTGAAAGCATATCAG</gDNA_template>
            <first_frame> E  K  A  H  S  H  R  T  R  E  A  K  R  E  R  I  E  Q  N  L  S  L  F  S  L  Q  K  I  F  D  F  N  L  R  E  I  G  N  G  F  F  Q  R  T  *  E  L  R  L  R  R  *  A  R  *  A  S  R  T  L  R  * :   N  G  *  S  D  E  K  C  R  K  H  G  C  *  I  D  C  G  G  K  E  S  S  F  C  W  L  *  E  C  G  R  F  *  E  S  I  L  E  D  L  V  L  Y  *  A  E  G  R  I  *  R  K  R  A  K  C  Q  A  N  Q  G  V  P  A  K  G  G  V  G  A  H  Q  H  L  Q  *  Y  Y  G  G  H  *  S  A  S  N  S  V  M  L  C  R  R  I  N  C  V  L  P  Q  D  :  E  G  R  L  L  S  L  S  C  R  I  *  S  W  Q  *  Q  E  G  G  C  *  A  F  I  E  S  I  S  </first_frame>
            <second_frame>  R  K  H  I  H  T  E  P  E  K  Q  K  G  R  E  *  S  K  I  S  L  C  F  H  Y  K  K  S  L  I  S  I  *  E  R  S  E  M  A  S  S  K  E  R  E  N  F  V  Y  V  A  K  L  A  E  Q  A  E  R  Y  D   : E  M  V  E  A  M  K  N  V  A  N  M  D  V  E  L  T  V  E  E  R  N  L  L  S  V  G  Y  K  N  V  V  G  S  R  R  A  S  W  R  I  L  S  S  I  E  Q  K  E  E  S  R  G  N  E  Q  N  V  K  R  I  K  E  Y  L  Q  K  V  E  S  E  L  T  N  I  C  N  D  I  M  V  V  I  D  Q  H  L  I  P  S  C  S  A  G  E  S  T  V  F  Y  H  K  M :   K  G  D  Y  Y  R  Y  L  A  E  F  K  A  G  N  D  K  K  E  V  A  E  L  S  L  K  A  Y  Q </second_frame>
            <third_frame>   E  S  T  F  T  Q  N  Q  R  S  K  K  G  E  N  R  A  K  S  L  S  V  F  T  T  K  N  L  *  F  Q  F  E  R  D  R  K  W  L  L  P  K  N  V  R  T  S  S  T  S  L  S  S  L  S  K  P  N  A  T  M  :  K  W  L  K  R  *  K  M  S  Q  T  W  M  L  N  *  L  W  R  K  G  I  F  F  L  L  V  I  R  M  W  *  V  L  G  E  H  L  G  G  S  C  P  L  L  S  R  R  K  N  L  E  E  T  S  K  M  S  S  E  S  R  S  T  C  K  R  W  S  R  S  S  P  T  F  A  M  I  L  W  W  S  L  I  S  I  *  F  R  H  A  L  Q  A  N  Q  L  C  F  T  T  R   : *  R  E  T  I  I  V  I  L  Q  N  L  K  L  A  M  T  R  R  R  L  L  S  F  H  *  K  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12872" stop="12788"/>
                    <exon start="11964" stop="11658"/>
                    <exon start="11551" stop="11464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERSEMASSKERENFVYVAKLAEQAERYDEMVEAMKNVANMDVELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEQNVKRIKEYLQKVESELTNICNDIMVVIDQHLIPSCSAGESTVFYHKMKGDYYRYLAEFKAGNDKKEVAELSLKAYQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12149" e_stop="11658"/>
            <exon e_start="11551" e_stop="11502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.734" acc_prob="0.673" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12149" e_stop="11658" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.734" acc_prob="0.673">
            <gDNA_intron_boundary i_start="11657" i_stop="11552" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11551" e_stop="11502" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12149" stop="11658"/>
              <exon start="11551" stop="11503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12149" stop="11658"/>
              <exon start="11551" stop="11504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11951" stop="11658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11887" stop="11658"/>
              <exon start="11551" stop="11502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325061" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTATTAAGGATTTTTAAAAAATGAATTCTGAATTAATATGTTAGCAAATGTTTTTTATCTGCTTGGAAGTTCTACACAGATTACCTTTTATTGATTTGTTTGGTTTAATCTATGAGAAATGTAACTAGGTTTCATATTTTATGTAATTGGTTGAGATTTTAAGGAATTGTGAGTTGTGGTACAGAAATGGTTGAAGCGATGAAAAATGTCGCAAACATGGATGTTGAATTGACTGTGGAGGAAAGGAATCTTCTTTCTGTTGGTTATAAGAATGTGGTAGGTTCTAGGAGAGCATCTTGGAGGATCTTGTCCTCTATTGAGCAGAAGGAAGAATCTAGAGGAAACGAGCAAAATGTCAAGCGAATCAAGGAGTACCTGCAAAAGGTGGAGTCGGAGCTCACCAACATTTGCAATGATATTATGGTGGTCATTGATCAGCATCTAATTCCGTCATGCTCTGCAGGCGAATCAACTGTGTTTTACCACAAGAT : GAAGGGAGACTATTATCGTTATCTTGCAGAATTTAAAGCTGGCAATGACA</gDNA_template>
            <first_frame> C  I  K  D  F  *  K  M  N  S  E  L  I  C  *  Q  M  F  F  I  C  L  E  V  L  H  R  L  P  F  I  D  L  F  G  L  I  Y  E  K  C  N  *  V  S  Y  F  M  *  L  V  E  I  L  R  N  C  E  L  W  Y  R  N  G  *  S  D  E  K  C  R  K  H  G  C  *  I  D  C  G  G  K  E  S  S  F  C  W  L  *  E  C  G  R  F  *  E  S  I  L  E  D  L  V  L  Y  *  A  E  G  R  I  *  R  K  R  A  K  C  Q  A  N  Q  G  V  P  A  K  G  G  V  G  A  H  Q  H  L  Q  *  Y  Y  G  G  H  *  S  A  S  N  S  V  M  L  C  R  R  I  N  C  V  L  P  Q  D  :  E  G  R  L  L  S  L  S  C  R  I  *  S  W  Q  *   </first_frame>
            <second_frame>  V  L  R  I  F  K  K  *  I  L  N  *  Y  V  S  K  C  F  L  S  A  W  K  F  Y  T  D  Y  L  L  L  I  C  L  V  *  S  M  R  N  V  T  R  F  H  I  L  C  N  W  L  R  F  *  G  I  V  S  C  G  T  E  M  V  E  A  M  K  N  V  A  N  M  D  V  E  L  T  V  E  E  R  N  L  L  S  V  G  Y  K  N  V  V  G  S  R  R  A  S  W  R  I  L  S  S  I  E  Q  K  E  E  S  R  G  N  E  Q  N  V  K  R  I  K  E  Y  L  Q  K  V  E  S  E  L  T  N  I  C  N  D  I  M  V  V  I  D  Q  H  L  I  P  S  C  S  A  G  E  S  T  V  F  Y  H  K  M :   K  G  D  Y  Y  R  Y  L  A  E  F  K  A  G  N  D  </second_frame>
            <third_frame>   Y  *  G  F  L  K  N  E  F  *  I  N  M  L  A  N  V  F  Y  L  L  G  S  S  T  Q  I  T  F  Y  *  F  V  W  F  N  L  *  E  M  *  L  G  F  I  F  Y  V  I  G  *  D  F  K  E  L  *  V  V  V  Q  K  W  L  K  R  *  K  M  S  Q  T  W  M  L  N  *  L  W  R  K  G  I  F  F  L  L  V  I  R  M  W  *  V  L  G  E  H  L  G  G  S  C  P  L  L  S  R  R  K  N  L  E  E  T  S  K  M  S  S  E  S  R  S  T  C  K  R  W  S  R  S  S  P  T  F  A  M  I  L  W  W  S  L  I  S  I  *  F  R  H  A  L  Q  A  N  Q  L  C  F  T  T  R   : *  R  E  T  I  I  V  I  L  Q  N  L  K  L  A  M  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11986" stop="11658"/>
                    <exon start="11551" stop="11503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIVSCGTEMVEAMKNVANMDVELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEQNVKRIKEYLQKVESELTNICNDIMVVIDQHLIPSCSAGESTVFYHKMKGDYYRYLAEFKAGND</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="20712" PGL_stop="24018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20712" e_stop="20742"/>
            <exon e_start="21980" e_stop="22161"/>
            <exon e_start="22344" e_stop="22603"/>
            <exon e_start="22737" e_stop="22785"/>
            <exon e_start="23952" e_stop="24018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.595" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20712" e_stop="20742" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.973">
            <gDNA_intron_boundary i_start="20743" i_stop="21979" i_length="1237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21980" e_stop="22161" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.595">
            <gDNA_intron_boundary i_start="22162" i_stop="22343" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22344" e_stop="22603" e_length="260"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="22604" i_stop="22736" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22737" e_stop="22785" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.982">
            <gDNA_intron_boundary i_start="22786" i_stop="23951" i_length="1166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23952" e_stop="24018" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20712" stop="20742"/>
              <exon start="21980" stop="22161"/>
              <exon start="22344" stop="22603"/>
              <exon start="22737" stop="22785"/>
              <exon start="23952" stop="24018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAATACAGCTAAGCCGTCCATTACTAAAG : AGTTCTGGATGTGTGACCATTGGATCTAACCATAAGCTAATCTATAGGTCCTTTGACAGCACAACCATTGTTGAACAAGCGATATTTCATCAACGAGCTCTTAGATGTTGGCACAACGGCTTGTTCAGCAATGATTCTGCTGCCAAGTGAACTTTGGATGACACTGGCTCAACACTCTTAAG : TTCATCCCATCAGCTATCACAGAGTTTTTATTCCACTGATATGCCTTTCATGCCTGCTGCACCCAGAACATTGTTGCTCTAACACAGAGAAGAGCTTTCTTACTCTTTCCTATTCGTTTTTTCTTTCAATTTCCATTTTTTTTGTCAAATTTGGTTTTTTCTTCTCAGATTGCTCAGCTGAAGTAGTGCTCTTAACAAAAGAAATGCAAAACAAATATTGGTTCTTAATAGGAAAAGCAAGTTAAAACTTATATTTTTAG : TTTTACAGGTGAAAACCAAATTAAACCGATCCCAGATGCTGTTCATGAC : GAATCACTTTGTCTGGTTGATAGTAACTATAATCAAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> C  N  T  A  K  P  S  I  T  K   : E  F  W  M  C  D  H  W  I  *  P  *  A  N  L  *  V  L  *  Q  H  N  H  C  *  T  S  D  I  S  S  T  S  S  *  M  L  A  Q  R  L  V  Q  Q  *  F  C  C  Q  V  N  F  G  *  H  W  L  N  T  L  K  :  F  I  P  S  A  I  T  E  F  L  F  H  *  Y  A  F  H  A  C  C  T  Q  N  I  V  A  L  T  Q  R  R  A  F  L  L  F  P  I  R  F  F  F  Q  F  P  F  F  L  S  N  L  V  F  S  S  Q  I  A  Q  L  K  *  C  S  *  Q  K  K  C  K  T  N  I  G  S  *  *  E  K  Q  V  K  T  Y  I  F  S :   F  T  G  E  N  Q  I  K  P  I  P  D  A  V  H  D  :  E  S  L  C  L  V  D  S  N  Y  N  Q  S  I  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  A  I  Q  L  S  R  P  L  L  K  :  S  S  G  C  V  T  I  G  S  N  H  K  L  I  Y  R  S  F  D  S  T  T  I  V  E  Q  A  I  F  H  Q  R  A  L  R  C  W  H  N  G  L  F  S  N  D  S  A  A  K  *  T  L  D  D  T  G  S  T  L  L  S :   S  S  H  Q  L  S  Q  S  F  Y  S  T  D  M  P  F  M  P  A  A  P  R  T  L  L  L  *  H  R  E  E  L  S  Y  S  F  L  F  V  F  S  F  N  F  H  F  F  C  Q  I  W  F  F  L  L  R  L  L  S  *  S  S  A  L  N  K  R  N  A  K  Q  I  L  V  L  N  R  K  S  K  L  K  L  I  F  L   : V  L  Q  V  K  T  K  L  N  R  S  Q  M  L  F  M  T :   N  H  F  V  W  L  I  V  T  I  I  K  V  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   Q  Y  S  *  A  V  H  Y  *  R :   V  L  D  V  *  P  L  D  L  T  I  S  *  S  I  G  P  L  T  A  Q  P  L  L  N  K  R  Y  F  I  N  E  L  L  D  V  G  T  T  A  C  S  A  M  I  L  L  P  S  E  L  W  M  T  L  A  Q  H  S  *   : V  H  P  I  S  Y  H  R  V  F  I  P  L  I  C  L  S  C  L  L  H  P  E  H  C  C  S  N  T  E  K  S  F  L  T  L  S  Y  S  F  F  L  S  I  S  I  F  F  V  K  F  G  F  F  F  S  D  C  S  A  E  V  V  L  L  T  K  E  M  Q  N  K  Y  W  F  L  I  G  K  A  S  *  N  L  Y  F  *  :  F  Y  R  *  K  P  N  *  T  D  P  R  C  C  S  *   : R  I  T  L  S  G  *  *  *  L  *  S  K  Y  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22161" stop="22588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHPISYHRVFIPLICLSCLLHPEHCCSNTEKSFLTLSYSFFLSISIFFVKFGFFFSDCSAEVVLLTKEMQNKYWFLIGKAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22525" stop="22603"/>
                    <exon start="22737" stop="22785"/>
                    <exon start="23952" stop="24018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSALNKRNAKQILVLNRKSKLKLIFLVLQVKTKLNRSQMLFMTNHFVWLIVTIIKVFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39385" PGL_stop="39821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39385" e_stop="39821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="39385" e_stop="39821" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39385" stop="39689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39388" stop="39821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTTCTTGTTTATCTTCCAAATTGGACCTTTGGGGCTTATCACAAATCCTTCAATAATGCTTCAATTCAAGAAGAAAATTGTATCTTTTCTTGTTCAGAAACTTTGCCAATAACAAAAAGTTTTATCTCTGTTTTAGTAATGGAAGTACCTATTAGTAGAATTGAAAAAATAAGCAAACCCAGTCCAAGAATCTCTGTTTGGTCATCACCCACAAACCGTCCACCTGGTTTTGTGCTGTAATTTGTAAGTGGGTGTTTTTCTTGCTGCAAAAAAGATGGAATTTTTAAGTTCTTTTAATGGGTTGAATGAGGTTTATGGGGGGTTTCAGGGTATAATAGGAAATGGGTTGTCATCATCTTCTTCATTAGTTTTGGATAATGAGAGTGGTGAGCTTGTGAAGGCAATGGTGAAACCAGGGGGAAAAGGGGTTAA</gDNA_template>
            <first_frame> K  I  F  L  F  I  F  Q  I  G  P  L  G  L  I  T  N  P  S  I  M  L  Q  F  K  K  K  I  V  S  F  L  V  Q  K  L  C  Q  *  Q  K  V  L  S  L  F  *  *  W  K  Y  L  L  V  E  L  K  K  *  A  N  P  V  Q  E  S  L  F  G  H  H  P  Q  T  V  H  L  V  L  C  C  N  L  *  V  G  V  F  L  A  A  K  K  M  E  F  L  S  S  F  N  G  L  N  E  V  Y  G  G  F  Q  G  I  I  G  N  G  L  S  S  S  S  S  L  V  L  D  N  E  S  G  E  L  V  K  A  M  V  K  P  G  G  K  G  V   </first_frame>
            <second_frame>  K  S  S  C  L  S  S  K  L  D  L  W  G  L  S  Q  I  L  Q  *  C  F  N  S  R  R  K  L  Y  L  F  L  F  R  N  F  A  N  N  K  K  F  Y  L  C  F  S  N  G  S  T  Y  *  *  N  *  K  N  K  Q  T  Q  S  K  N  L  C  L  V  I  T  H  K  P  S  T  W  F  C  A  V  I  C  K  W  V  F  F  L  L  Q  K  R  W  N  F  *  V  L  L  M  G  *  M  R  F  M  G  G  F  R  V  *  *  E  M  G  C  H  H  L  L  H  *  F  W  I  M  R  V  V  S  L  *  R  Q  W  *  N  Q  G  E  K  G  L  </second_frame>
            <third_frame>   N  L  L  V  Y  L  P  N  W  T  F  G  A  Y  H  K  S  F  N  N  A  S  I  Q  E  E  N  C  I  F  S  C  S  E  T  L  P  I  T  K  S  F  I  S  V  L  V  M  E  V  P  I  S  R  I  E  K  I  S  K  P  S  P  R  I  S  V  W  S  S  P  T  N  R  P  P  G  F  V  L  *  F  V  S  G  C  F  S  C  C  K  K  D  G  I  F  K  F  F  *  W  V  E  *  G  L  W  G  V  S  G  Y  N  R  K  W  V  V  I  I  F  F  I  S  F  G  *  *  E  W  *  A  C  E  G  N  G  E  T  R  G  K  R  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39387" stop="39629"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLVYLPNWTFGAYHKSFNNASIQEENCIFSCSETLPITKSFISVLVMEVPISRIEKISKPSPRISVWSSPTNRPPGFVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="46633" PGL_stop="51576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46633" e_stop="46992"/>
            <exon e_start="47195" e_stop="47287"/>
            <exon e_start="48204" e_stop="48269"/>
            <exon e_start="48423" e_stop="48563"/>
            <exon e_start="48959" e_stop="49186"/>
            <exon e_start="49272" e_stop="49389"/>
            <exon e_start="49466" e_stop="49605"/>
            <exon e_start="49720" e_stop="49887"/>
            <exon e_start="50418" e_stop="50573"/>
            <exon e_start="50958" e_stop="51576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46633" e_stop="46992" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47195" e_stop="47287" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48204" e_stop="48269" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48423" e_stop="48563" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48959" e_stop="49186" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49272" e_stop="49389" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49466" e_stop="49605" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49720" e_stop="49887" e_length="168"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49888" i_stop="50417" i_length="530"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="50418" e_stop="50573" e_length="156"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="50574" i_stop="50957" i_length="384"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="50958" e_stop="51576" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46633" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46634" stop="46992"/>
              <exon start="47195" stop="47218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46638" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46638" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46639" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46640" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46642" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46642" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46643" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585243" strand="+"/>
          </PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51069" stop="51568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51086" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51176" stop="51535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG : TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG : GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG : ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG : GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG : GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG : GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG : GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT : GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG : ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAGCATGTTTCAGTCTCTAC</gDNA_template>
            <first_frame> L  I  P  L  S  L  *  H  F  D  L  S  A  F  H  F  T  I  M  A  A  A  A  A  T  S  F  S  I  T  T  S  T  P  P  S  S  S  A  S  S  T  K  S  L  K  P  S  L  V  G  N  L  G  F  L  S  S  S  T  P  S  L  K  P  L  R  A  Q  A  A  V  S  S  S  S  S  N  S  G  G  G  A  L  A  A  R  M  V  A  A  P  A  T  V  K  A  P  A  S  F  D  F  E  T  S  V  F  K  K  E  K  V  T  L  A  G  N  D  E  :  Y  I  V  R  G  G  R  D  L  F  K  Y  L  P  D  A  F  K  G  I  K  Q  I  G  V  I  G  W  G  S  Q  :  G  P  A  Q  A  Q  N  L  R  D  S  L  A  E  I  K  S  D  I  V  V  K  :  I  G  L  R  K  G  S  S  S  F  A  E  A  R  T  A  G  F  T  E  E  N  G  T  L  G  D  I  Y  E  T  I  S  G  S  D  L  V  L  L  L  I  S  D  A  A  Q  :  A  D  N  Y  E  K  V  F  S  H  M  K  P  N  S  I  L  G  L  S  H  G  F  L  L  G  H  L  Q  S  M  G  L  D  F  P  K  N  I  S  V  I  A  V  C  P  K  G  M  G  P  S  V  R  R  L  Y  V  Q  G  K  E  V  N  G  A  G  I  N  S  S  F  A  V  H  Q  :  D  I  D  G  R  A  T  D  V  A  L  G  W  S  V  A  L  G  S  P  F  T  F  A  T  T  L  E  Q  E  Y  K  S  D  I  F  G  E  R   : G  I  L  L  G  A  V  H  G  V  V  E  S  L  F  R  R  Y  T  E  N  G  M  N  E  E  L  A  Y  K  N  T  V  E  C  I  T  G  V  I  S  K  T  I  S  T  K  :  G  M  L  A  V  Y  D  S  L  T  E  E  G  K  K  E  F  E  A  A  Y  S  A  S  F  Y  P  C  M  E  I  L  Y  E  C  Y  E  D  V  A  T  G  S  E  I  R  S  V  V  L  A  G  R  R  F  Y  :  E  K  E  G  L  P  A  F  P  M  G  K  I  D  Q  T  R  M  W  K  V  G  E  R  V  R  A  T  R  P  A  G  D  L  G  P  L  Y  P  F  T  A  G  V  F  V  A  L  M  M  A  Q  :  I  E  V  L  R  K  K  G  H  S  Y  S  E  I  I  N  E  S  V  I  E  S  V  D  S  L  N  P  F  M  H  A  R  G  V  S  F  M  V  D  N  C  S  T  T  A  R  L  G  S  R  K  W  A  P  R  F  D  Y  N  L  T  Q  Q  A  L  V  A  V  D  N  N  T  P  I  N  R  D  L  I  S  N  F  L  A  D  P  V  H  G  A  I  K  V  C  A  E  L  R  P  T  V  D  I  S  V  T  A  D  A  D  F  V  R  P  E  L  R  Q  S  V  N  *  G  L  Y  G  S  L  C  E  R  A  S  E  N  *  *  C  *  D  F  I  L  L  M  C  V  G  E  G  K  N  T  *  I  C  *  L  I  R  I  L  A  A  F  R  C  L  V  T  L  V  L  A  L  F  Y  V  T  N  N  R  F  K  I  W  E  P  L  *  Q  L  *  N  V  G  Y  G  S  S  M  F  Q  S  L  </first_frame>
            <second_frame>  L  S  L  S  L  C  N  T  S  I  C  L  L  S  T  S  Q  S  W  R  R  R  R  Q  L  P  S  P  S  P  P  L  L  L  R  P  P  P  H  H  Q  P  N  P  *  N  L  R  L  L  V  T  *  G  F  Y  P  R  Q  L  H  R  L  S  L  S  E  L  K  P  P  F  H  L  A  A  Q  T  P  A  E  A  R  L  R  L  A  W  S  L  H  L  L  P  S  K  L  L  L  R  L  I  L  K  R  P  F  L  R  R  R  K  *  P  *  L  E  M  M  S :   T  L  *  G  E  V  E  I  C  S  S  I  C  R  M  L  S  K  E  S  S  R  S  E  L  S  A  G  V  L  R :   D  L  L  K  P  R  T  *  G  I  L  L  Q  K  *  N  L  T  *  L  L  R :   L  V  *  E  R  V  Q  A  H  L  R  R  P  A  Q  L  G  L  L  K  R  M  E  P  L  V  T  Y  M  R  L  S  L  A  V  I  *  C  C  F  *  F  L  M  L  L  R :   L  I  I  M  R  K  C  S  L  T  *  S  Q  T  A  Y  L  G  F  H  M  D  S  S  L  A  I  C  S  Q  W  A  L  T  S  Q  R  T  L  V  *  L  L  Y  V  P  R  E  W  G  L  Q  S  G  D  Y  M  F  K  E  K  K  S  M  V  L  E  L  I  Q  V  L  Q  F  T  R :   I  L  M  E  E  P  Q  M  L  L  L  G  G  L  L  P  L  V  L  P  L  L  L  L  L  L  *  S  R  N  I  K  V  T  F  L  G  N  E  :  A  F  Y  L  V  L  S  M  E  L  W  S  R  F  S  E  G  T  L  R  M  E  *  M  R  S  L  H  T  R  T  L  *  N  A  *  Q  E  S  F  Q  K  P  Y  Q  Q  R :   A  C  W  L  C  M  T  H  *  L  R  R  A  R  R  S  L  K  L  H  T  V  L  H  S  T  P  A  W  R  F  C  M  S  A  M  K  M  *  L  Q  V  V  R  S  G  A  L  S  W  L  A  A  A  F  M :   K  R  R  A  Y  L  P  S  Q  W  G  K  L  I  K  Q  G  C  G  R  L  V  S  A  S  E  Q  P  D  Q  L  V  I  L  V  L  C  I  H  S  P  L  V  S  L  W  H  *  *  W  P  R :   L  R  F  *  G  R  K  D  I  L  T  P  R  L  S  M  K  A  S  S  S  L  *  I  L  *  I  R  L  C  T  L  V  E  Y  H  S  W  L  T  I  A  Q  Q  Q  H  V  *  V  P  G  S  G  P  L  D  L  I  T  I  S  P  N  K  H  L  *  P  W  I  T  T  R  L  S  T  V  I  S  S  A  T  S  L  Q  I  P  C  M  E  L  L  K  C  V  L  N  *  D  P  Q  L  I  F  L  *  Q  Q  M  L  I  L  S  A  L  S  S  G  N  L  S  I  K  G  F  T  G  H  F  V  S  E  Q  V  R  I  S  D  V  E  I  S  Y  C  *  C  V  L  V  K  A  R  I  L  K  S  V  S  L  *  E  S  *  P  L  F  V  V  *  L  R  W  Y  *  H  F  F  M  *  R  I  T  D  S  K  F  G  N  P  C  S  N  Y  K  M  W  V  M  A  V  A  C  F  S  L  Y </second_frame>
            <third_frame>   Y  P  S  L  S  V  T  L  R  F  V  C  F  P  L  H  N  H  G  G  G  G  G  N  F  L  L  H  H  H  L  Y  S  S  V  L  L  R  I  I  N  Q  I  P  K  T  F  A  C  W  *  L  R  V  S  I  L  V  N  S  I  A  *  A  S  Q  S  S  S  R  R  F  I  *  Q  L  K  L  R  R  R  R  A  C  G  S  H  G  R  C  T  C  Y  R  Q  S  S  C  F  V  *  F  *  N  V  R  F  *  E  G  E  S  N  P  S  W  K  *  *   : V  H  C  E  G  R  *  R  F  V  Q  V  F  A  G  C  F  Q  R  N  Q  A  D  R  S  Y  R  L  G  F  S   : G  T  C  S  S  P  E  L  E  G  F  S  C  R  N  K  I  *  H  S  C  *   : D  W  F  K  K  G  F  K  L  I  C  G  G  P  H  S  W  V  Y  *  R  E  W  N  P  W  *  H  I  *  D  Y  L  W  Q  *  S  S  A  A  F  D  F  *  C  C  S   : G  *  *  L  *  E  S  V  L  S  H  E  A  K  Q  H  T  W  A  F  T  W  I  P  P  W  P  F  A  V  N  G  P  *  L  P  K  E  H  *  C  D  C  C  M  S  Q  G  N  G  A  F  S  Q  E  I  I  C  S  R  K  R  S  Q  W  C  W  N  *  F  K  F  C  S  S  P   : G  Y  *  W  K  S  H  R  C  C  S  W  V  V  C  C  P  W  F  S  L  Y  F  C  Y  Y  S  R  A  G  I  *  K  *  H  F  W  G  T  R :   H  F  T  W  C  C  P  W  S  C  G  V  A  F  Q  K  V  H  *  E  W  N  E  *  G  A  C  I  Q  E  H  C  R  M  H  N  R  S  H  F  K  N  H  I  N  K   : G  H  V  G  C  V  *  L  I  D  *  G  G  Q  E  G  V  *  S  C  I  Q  C  F  I  L  P  L  H  G  D  F  V  *  V  L  *  R  C  S  Y  R  *  *  D  Q  E  R  C  L  G  W  P  P  L  L   : *  K  G  G  L  T  C  L  P  N  G  E  N  *  S  N  K  D  V  E  G  W  *  A  R  P  S  N  P  T  S  W  *  S  W  S  S  V  S  I  H  R  W  C  L  C  G  I  D  D  G  P   : D  *  G  S  E  E  E  R  T  F  L  L  R  D  Y  Q  *  K  R  H  R  V  C  R  F  F  E  S  V  Y  A  R  S  W  S  I  I  H  G  *  Q  L  L  N  N  S  T  S  R  F  Q  E  V  G  P  S  I  *  L  Q  S  H  P  T  S  T  C  S  R  G  *  Q  H  A  Y  Q  P  *  S  H  Q  Q  L  P  C  R  S  R  A  W  S  Y  *  S  V  C  *  T  K  T  H  S  *  Y  F  C  N  S  R  C  *  F  C  P  P  *  A  Q  A  I  C  Q  L  R  A  L  R  V  T  L  *  A  S  K  *  E  L  V  M  L  R  F  H  I  V  D  V  C  W  *  R  Q  E  Y  L  N  L  L  A  Y  K  N  L  S  R  F  S  L  F  S  Y  V  G  T  S  T  F  L  C  N  E  *  Q  I  Q  N  L  G  T  L  V  A  T  I  K  C  G  L  W  Q  *  H  V  S  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46654" stop="46992"/>
                    <exon start="47195" stop="47287"/>
                    <exon start="48204" stop="48269"/>
                    <exon start="48423" stop="48563"/>
                    <exon start="48959" stop="49186"/>
                    <exon start="49272" stop="49389"/>
                    <exon start="49466" stop="49605"/>
                    <exon start="49720" stop="49887"/>
                    <exon start="50418" stop="50573"/>
                    <exon start="50958" stop="51326"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1815</number_coding_nucleotides>
                  <number_encoded_amino_acids>605</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFDLSAFHFTIMAAAAATSFSITTSTPPSSSASSTKSLKPSLVGNLGFLSSSTPSLKPLRAQAAVSSSSSNSGGGALAARMVAAPATVKAPASFDFETSVFKKEKVTLAGNDEYIVRGGRDLFKYLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEIKSDIVVKIGLRKGSSSFAEARTAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDIDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGVVESLFRRYTENGMNEELAYKNTVECITGVISKTISTKGMLAVYDSLTEEGKKEFEAAYSASFYPCMEILYECYEDVATGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRATRPAGDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYNLTQQALVAVDNNTPINRDLISNFLADPVHGAIKVCAELRPTVDISVTADADFVRPELRQSVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46633" e_stop="46992"/>
            <exon e_start="47195" e_stop="47287"/>
            <exon e_start="48204" e_stop="48269"/>
            <exon e_start="48423" e_stop="48563"/>
            <exon e_start="48959" e_stop="49186"/>
            <exon e_start="49272" e_stop="49605"/>
            <exon e_start="49720" e_stop="50013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="0.956"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46633" e_stop="46992" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47195" e_stop="47287" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48204" e_stop="48269" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48423" e_stop="48563" e_length="141"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48959" e_stop="49186" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.956">
            <gDNA_exon_boundary e_start="49272" e_stop="49605" e_length="334"/>
          </exon>
          <intron i_serial="6" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="49606" i_stop="49719" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.939">
            <gDNA_exon_boundary e_start="49720" e_stop="50013" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46633" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46634" stop="46992"/>
              <exon start="47195" stop="47218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46637" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720752" strand="+"/>
          </PGS_line>
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              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46833" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46847" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46848" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46855" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46932" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46965" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49186"/>
              <exon start="49272" stop="49308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46975" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49186"/>
              <exon start="49272" stop="49277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46980" stop="46992"/>
              <exon start="47195" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47245" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49186"/>
              <exon start="49272" stop="49296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47257" stop="47287"/>
              <exon start="48204" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48224" stop="48269"/>
              <exon start="48423" stop="48563"/>
              <exon start="48959" stop="49175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49289" stop="49605"/>
              <exon start="49720" stop="50013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49289" stop="49605"/>
              <exon start="49720" stop="49919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACCTGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAG : TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG : GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG : ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG : GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG : GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAGGTTAGTGTGTTTTCAAGTCATTTCTAGCTTACTAAAGCCGTTACGGTTGAGTAATTGTGTTCCCCTCCCTCGTTAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG : GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGTAAGTCATTTTTGACTCTGTAGTTTTACAATAGTAATTTGGCCGGGTTTGGACTTTCGTTTTAGTTTAATTCTTTAATGATTAGGTTTTGAGATGTTTTTGAAGAATAATTCTGGGGAAATTATG</gDNA_template>
            <first_frame> L  I  P  L  S  L  *  H  F  D  L  S  A  F  H  F  T  I  M  A  A  A  A  A  T  S  F  S  I  T  T  S  T  P  P  S  S  S  A  S  S  T  K  S  L  K  P  S  L  V  G  N  L  G  F  L  S  S  S  T  P  S  L  K  P  L  R  A  Q  A  A  V  S  S  S  S  S  N  S  G  G  G  A  L  A  A  R  M  V  A  A  P  A  T  V  K  A  P  A  S  F  D  F  E  T  S  V  F  K  K  E  K  V  T  L  A  G  N  D  E  :  Y  I  V  R  G  G  R  D  L  F  K  Y  L  P  D  A  F  K  G  I  K  Q  I  G  V  I  G  W  G  S  Q  :  G  P  A  Q  A  Q  N  L  R  D  S  L  A  E  I  K  S  D  I  V  V  K  :  I  G  L  R  K  G  S  S  S  F  A  E  A  R  T  A  G  F  T  E  E  N  G  T  L  G  D  I  Y  E  T  I  S  G  S  D  L  V  L  L  L  I  S  D  A  A  Q  :  A  D  N  Y  E  K  V  F  S  H  M  K  P  N  S  I  L  G  L  S  H  G  F  L  L  G  H  L  Q  S  M  G  L  D  F  P  K  N  I  S  V  I  A  V  C  P  K  G  M  G  P  S  V  R  R  L  Y  V  Q  G  K  E  V  N  G  A  G  I  N  S  S  F  A  V  H  Q  :  D  I  D  G  R  A  T  D  V  A  L  G  W  S  V  A  L  G  S  P  F  T  F  A  T  T  L  E  Q  E  Y  K  S  D  I  F  G  E  R  G  *  C  V  F  K  S  F  L  A  Y  *  S  R  Y  G  *  V  I  V  F  P  S  L  V  R  H  F  T  W  C  C  P  W  S  C  G  V  A  F  Q  K  V  H  *  E  W  N  E  *  G  A  C  I  Q  E  H  C  R  M  H  N  R  S  H  F  K  N  H  I  N  K   : G  H  V  G  C  V  *  L  I  D  *  G  G  Q  E  G  V  *  S  C  I  Q  C  F  I  L  P  L  H  G  D  F  V  *  V  L  *  R  C  S  Y  R  *  *  D  Q  E  R  C  L  G  W  P  P  L  L  C  K  S  F  L  T  L  *  F  Y  N  S  N  L  A  G  F  G  L  S  F  *  F  N  S  L  M  I  R  F  *  D  V  F  E  E  *  F  W  G  N  Y  </first_frame>
            <second_frame>  L  S  L  S  L  C  N  T  S  I  C  L  L  S  T  S  Q  S  W  R  R  R  R  Q  L  P  S  P  S  P  P  L  L  L  R  P  P  P  H  H  Q  P  N  P  *  N  L  R  L  L  V  T  *  G  F  Y  P  R  Q  L  H  R  L  S  L  S  E  L  K  P  P  F  H  L  A  A  Q  T  P  A  E  A  R  L  R  L  A  W  S  L  H  L  L  P  S  K  L  L  L  R  L  I  L  K  R  P  F  L  R  R  R  K  *  P  *  L  E  M  M  S :   T  L  *  G  E  V  E  I  C  S  S  I  C  R  M  L  S  K  E  S  S  R  S  E  L  S  A  G  V  L  R :   D  L  L  K  P  R  T  *  G  I  L  L  Q  K  *  N  L  T  *  L  L  R :   L  V  *  E  R  V  Q  A  H  L  R  R  P  A  Q  L  G  L  L  K  R  M  E  P  L  V  T  Y  M  R  L  S  L  A  V  I  *  C  C  F  *  F  L  M  L  L  R :   L  I  I  M  R  K  C  S  L  T  *  S  Q  T  A  Y  L  G  F  H  M  D  S  S  L  A  I  C  S  Q  W  A  L  T  S  Q  R  T  L  V  *  L  L  Y  V  P  R  E  W  G  L  Q  S  G  D  Y  M  F  K  E  K  K  S  M  V  L  E  L  I  Q  V  L  Q  F  T  R :   I  L  M  E  E  P  Q  M  L  L  L  G  G  L  L  P  L  V  L  P  L  L  L  L  L  L  *  S  R  N  I  K  V  T  F  L  G  N  E  V  S  V  F  S  S  H  F  *  L  T  K  A  V  T  V  E  *  L  C  S  P  P  S  L  G  I  L  L  G  A  V  H  G  V  V  E  S  L  F  R  R  Y  T  E  N  G  M  N  E  E  L  A  Y  K  N  T  V  E  C  I  T  G  V  I  S  K  T  I  S  T  K  :  G  M  L  A  V  Y  D  S  L  T  E  E  G  K  K  E  F  E  A  A  Y  S  A  S  F  Y  P  C  M  E  I  L  Y  E  C  Y  E  D  V  A  T  G  S  E  I  R  S  V  V  L  A  G  R  R  F  Y  V  S  H  F  *  L  C  S  F  T  I  V  I  W  P  G  L  D  F  R  F  S  L  I  L  *  *  L  G  F  E  M  F  L  K  N  N  S  G  E  I  M </second_frame>
            <third_frame>   Y  P  S  L  S  V  T  L  R  F  V  C  F  P  L  H  N  H  G  G  G  G  G  N  F  L  L  H  H  H  L  Y  S  S  V  L  L  R  I  I  N  Q  I  P  K  T  F  A  C  W  *  L  R  V  S  I  L  V  N  S  I  A  *  A  S  Q  S  S  S  R  R  F  I  *  Q  L  K  L  R  R  R  R  A  C  G  S  H  G  R  C  T  C  Y  R  Q  S  S  C  F  V  *  F  *  N  V  R  F  *  E  G  E  S  N  P  S  W  K  *  *   : V  H  C  E  G  R  *  R  F  V  Q  V  F  A  G  C  F  Q  R  N  Q  A  D  R  S  Y  R  L  G  F  S   : G  T  C  S  S  P  E  L  E  G  F  S  C  R  N  K  I  *  H  S  C  *   : D  W  F  K  K  G  F  K  L  I  C  G  G  P  H  S  W  V  Y  *  R  E  W  N  P  W  *  H  I  *  D  Y  L  W  Q  *  S  S  A  A  F  D  F  *  C  C  S   : G  *  *  L  *  E  S  V  L  S  H  E  A  K  Q  H  T  W  A  F  T  W  I  P  P  W  P  F  A  V  N  G  P  *  L  P  K  E  H  *  C  D  C  C  M  S  Q  G  N  G  A  F  S  Q  E  I  I  C  S  R  K  R  S  Q  W  C  W  N  *  F  K  F  C  S  S  P   : G  Y  *  W  K  S  H  R  C  C  S  W  V  V  C  C  P  W  F  S  L  Y  F  C  Y  Y  S  R  A  G  I  *  K  *  H  F  W  G  T  R  L  V  C  F  Q  V  I  S  S  L  L  K  P  L  R  L  S  N  C  V  P  L  P  R  *  A  F  Y  L  V  L  S  M  E  L  W  S  R  F  S  E  G  T  L  R  M  E  *  M  R  S  L  H  T  R  T  L  *  N  A  *  Q  E  S  F  Q  K  P  Y  Q  Q  R :   A  C  W  L  C  M  T  H  *  L  R  R  A  R  R  S  L  K  L  H  T  V  L  H  S  T  P  A  W  R  F  C  M  S  A  M  K  M  *  L  Q  V  V  R  S  G  A  L  S  W  L  A  A  A  F  M  *  V  I  F  D  S  V  V  L  Q  *  *  F  G  R  V  W  T  F  V  L  V  *  F  F  N  D  *  V  L  R  C  F  *  R  I  I  L  G  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46654" stop="46992"/>
                    <exon start="47195" stop="47287"/>
                    <exon start="48204" stop="48269"/>
                    <exon start="48423" stop="48563"/>
                    <exon start="48959" stop="49186"/>
                    <exon start="49272" stop="49394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFDLSAFHFTIMAAAAATSFSITTSTPPSSSASSTKSLKPSLVGNLGFLSSSTPSLKPLRAQAAVSSSSSNSGGGALAARMVAAPATVKAPASFDFETSVFKKEKVTLAGNDEYIVRGGRDLFKYLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEIKSDIVVKIGLRKGSSSFAEARTAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDIDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49444" stop="49605"/>
                    <exon start="49720" stop="49902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCSPPSLGILLGAVHGVVESLFRRYTENGMNEELAYKNTVECITGVISKTISTKGMLAVYDSLTEEGKKEFEAAYSASFYPCMEILYECYEDVATGSEIRSVVLAGRRFYVSHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46637" e_stop="46852"/>
            <exon e_start="46979" e_stop="46992"/>
            <exon e_start="47195" e_stop="47287"/>
            <exon e_start="48204" e_stop="48269"/>
            <exon e_start="48423" e_stop="48563"/>
            <exon e_start="48959" e_stop="49186"/>
            <exon e_start="49272" e_stop="49389"/>
            <exon e_start="49466" e_stop="49605"/>
            <exon e_start="49720" e_stop="49887"/>
            <exon e_start="50418" e_stop="50573"/>
            <exon e_start="50958" e_stop="51576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.939"/>
          <exon-intron don_prob="0.971" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="46637" e_stop="46852" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46853" i_stop="46978" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46979" e_stop="46992" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.992">
            <gDNA_intron_boundary i_start="46993" i_stop="47194" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47195" e_stop="47287" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47288" i_stop="48203" i_length="916"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48204" e_stop="48269" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="48270" i_stop="48422" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48423" e_stop="48563" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48564" i_stop="48958" i_length="395"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48959" e_stop="49186" e_length="228"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="49187" i_stop="49271" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49272" e_stop="49389" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49390" i_stop="49465" i_length="76"/>
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              <exon start="50958" stop="51559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49855" stop="49887"/>
              <exon start="50418" stop="50573"/>
              <exon start="50958" stop="51093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49860" stop="49887"/>
              <exon start="50418" stop="50573"/>
              <exon start="50958" stop="51444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50425" stop="50573"/>
              <exon start="50958" stop="51398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50473" stop="50573"/>
              <exon start="50958" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50513" stop="50573"/>
              <exon start="50958" stop="51576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50517" stop="50573"/>
              <exon start="50958" stop="51576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50520" stop="50573"/>
              <exon start="50958" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50548" stop="50573"/>
              <exon start="50958" stop="51504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50548" stop="50573"/>
              <exon start="50958" stop="51497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50958" stop="51489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50961" stop="51341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50974" stop="51399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50979" stop="51464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50998" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51025" stop="51558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51069" stop="51568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51086" stop="51555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51176" stop="51535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223019" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTCTACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATCGCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCAT : CTGGAAATGATGAG : TACATTGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAG : GGACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAG : ATTGGTTTAAGAAAGGGTTCAAGCTCATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCTGCTTTTGATTTCTGATGCTGCTCAG : GCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGGATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTCAGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAG : GATATTGATGGAAGAGCCACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTTTGGGGAACGAG : GCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCTTGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAG : GGCATGTTGGCTGTGTATGACTCATTGACTGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGCTACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTAT : GAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGATCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGTCTTTGTGGCATTGATGATGGCCCAG : ATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTCTGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAAGTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAACTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTTTGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTTCATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTTGGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAGCATGTTTCAGTCTCTAC</gDNA_template>
            <first_frame> S  L  S  L  C  N  T  S  I  C  L  L  S  T  S  Q  S  W  R  R  R  R  Q  L  P  S  P  S  P  P  L  L  L  R  P  P  P  H  H  Q  P  N  P  *  N  L  R  L  L  V  T  *  G  F  Y  P  R  Q  L  H  R  L  S  L  S  E  L  K  P  P  F  H  :  L  E  M  M  S :   T  L  *  G  E  V  E  I  C  S  S  I  C  R  M  L  S  K  E  S  S  R  S  E  L  S  A  G  V  L  R :   D  L  L  K  P  R  T  *  G  I  L  L  Q  K  *  N  L  T  *  L  L  R :   L  V  *  E  R  V  Q  A  H  L  R  R  P  A  Q  L  G  L  L  K  R  M  E  P  L  V  T  Y  M  R  L  S  L  A  V  I  *  C  C  F  *  F  L  M  L  L  R :   L  I  I  M  R  K  C  S  L  T  *  S  Q  T  A  Y  L  G  F  H  M  D  S  S  L  A  I  C  S  Q  W  A  L  T  S  Q  R  T  L  V  *  L  L  Y  V  P  R  E  W  G  L  Q  S  G  D  Y  M  F  K  E  K  K  S  M  V  L  E  L  I  Q  V  L  Q  F  T  R :   I  L  M  E  E  P  Q  M  L  L  L  G  G  L  L  P  L  V  L  P  L  L  L  L  L  L  *  S  R  N  I  K  V  T  F  L  G  N  E  :  A  F  Y  L  V  L  S  M  E  L  W  S  R  F  S  E  G  T  L  R  M  E  *  M  R  S  L  H  T  R  T  L  *  N  A  *  Q  E  S  F  Q  K  P  Y  Q  Q  R :   A  C  W  L  C  M  T  H  *  L  R  R  A  R  R  S  L  K  L  H  T  V  L  H  S  T  P  A  W  R  F  C  M  S  A  M  K  M  *  L  Q  V  V  R  S  G  A  L  S  W  L  A  A  A  F  M :   K  R  R  A  Y  L  P  S  Q  W  G  K  L  I  K  Q  G  C  G  R  L  V  S  A  S  E  Q  P  D  Q  L  V  I  L  V  L  C  I  H  S  P  L  V  S  L  W  H  *  *  W  P  R :   L  R  F  *  G  R  K  D  I  L  T  P  R  L  S  M  K  A  S  S  S  L  *  I  L  *  I  R  L  C  T  L  V  E  Y  H  S  W  L  T  I  A  Q  Q  Q  H  V  *  V  P  G  S  G  P  L  D  L  I  T  I  S  P  N  K  H  L  *  P  W  I  T  T  R  L  S  T  V  I  S  S  A  T  S  L  Q  I  P  C  M  E  L  L  K  C  V  L  N  *  D  P  Q  L  I  F  L  *  Q  Q  M  L  I  L  S  A  L  S  S  G  N  L  S  I  K  G  F  T  G  H  F  V  S  E  Q  V  R  I  S  D  V  E  I  S  Y  C  *  C  V  L  V  K  A  R  I  L  K  S  V  S  L  *  E  S  *  P  L  F  V  V  *  L  R  W  Y  *  H  F  F  M  *  R  I  T  D  S  K  F  G  N  P  C  S  N  Y  K  M  W  V  M  A  V  A  C  F  S  L  Y </first_frame>
            <second_frame>  P  S  L  S  V  T  L  R  F  V  C  F  P  L  H  N  H  G  G  G  G  G  N  F  L  L  H  H  H  L  Y  S  S  V  L  L  R  I  I  N  Q  I  P  K  T  F  A  C  W  *  L  R  V  S  I  L  V  N  S  I  A  *  A  S  Q  S  S  S  R  R  F  I :   W  K  *  *   : V  H  C  E  G  R  *  R  F  V  Q  V  F  A  G  C  F  Q  R  N  Q  A  D  R  S  Y  R  L  G  F  S   : G  T  C  S  S  P  E  L  E  G  F  S  C  R  N  K  I  *  H  S  C  *   : D  W  F  K  K  G  F  K  L  I  C  G  G  P  H  S  W  V  Y  *  R  E  W  N  P  W  *  H  I  *  D  Y  L  W  Q  *  S  S  A  A  F  D  F  *  C  C  S   : G  *  *  L  *  E  S  V  L  S  H  E  A  K  Q  H  T  W  A  F  T  W  I  P  P  W  P  F  A  V  N  G  P  *  L  P  K  E  H  *  C  D  C  C  M  S  Q  G  N  G  A  F  S  Q  E  I  I  C  S  R  K  R  S  Q  W  C  W  N  *  F  K  F  C  S  S  P   : G  Y  *  W  K  S  H  R  C  C  S  W  V  V  C  C  P  W  F  S  L  Y  F  C  Y  Y  S  R  A  G  I  *  K  *  H  F  W  G  T  R :   H  F  T  W  C  C  P  W  S  C  G  V  A  F  Q  K  V  H  *  E  W  N  E  *  G  A  C  I  Q  E  H  C  R  M  H  N  R  S  H  F  K  N  H  I  N  K   : G  H  V  G  C  V  *  L  I  D  *  G  G  Q  E  G  V  *  S  C  I  Q  C  F  I  L  P  L  H  G  D  F  V  *  V  L  *  R  C  S  Y  R  *  *  D  Q  E  R  C  L  G  W  P  P  L  L   : *  K  G  G  L  T  C  L  P  N  G  E  N  *  S  N  K  D  V  E  G  W  *  A  R  P  S  N  P  T  S  W  *  S  W  S  S  V  S  I  H  R  W  C  L  C  G  I  D  D  G  P   : D  *  G  S  E  E  E  R  T  F  L  L  R  D  Y  Q  *  K  R  H  R  V  C  R  F  F  E  S  V  Y  A  R  S  W  S  I  I  H  G  *  Q  L  L  N  N  S  T  S  R  F  Q  E  V  G  P  S  I  *  L  Q  S  H  P  T  S  T  C  S  R  G  *  Q  H  A  Y  Q  P  *  S  H  Q  Q  L  P  C  R  S  R  A  W  S  Y  *  S  V  C  *  T  K  T  H  S  *  Y  F  C  N  S  R  C  *  F  C  P  P  *  A  Q  A  I  C  Q  L  R  A  L  R  V  T  L  *  A  S  K  *  E  L  V  M  L  R  F  H  I  V  D  V  C  W  *  R  Q  E  Y  L  N  L  L  A  Y  K  N  L  S  R  F  S  L  F  S  Y  V  G  T  S  T  F  L  C  N  E  *  Q  I  Q  N  L  G  T  L  V  A  T  I  K  C  G  L  W  Q  *  H  V  S  V  S   </second_frame>
            <third_frame>   P  L  S  L  *  H  F  D  L  S  A  F  H  F  T  I  M  A  A  A  A  A  T  S  F  S  I  T  T  S  T  P  P  S  S  S  A  S  S  T  K  S  L  K  P  S  L  V  G  N  L  G  F  L  S  S  S  T  P  S  L  K  P  L  R  A  Q  A  A  V  S   : S  G  N  D  E  :  Y  I  V  R  G  G  R  D  L  F  K  Y  L  P  D  A  F  K  G  I  K  Q  I  G  V  I  G  W  G  S  Q  :  G  P  A  Q  A  Q  N  L  R  D  S  L  A  E  I  K  S  D  I  V  V  K  :  I  G  L  R  K  G  S  S  S  F  A  E  A  R  T  A  G  F  T  E  E  N  G  T  L  G  D  I  Y  E  T  I  S  G  S  D  L  V  L  L  L  I  S  D  A  A  Q  :  A  D  N  Y  E  K  V  F  S  H  M  K  P  N  S  I  L  G  L  S  H  G  F  L  L  G  H  L  Q  S  M  G  L  D  F  P  K  N  I  S  V  I  A  V  C  P  K  G  M  G  P  S  V  R  R  L  Y  V  Q  G  K  E  V  N  G  A  G  I  N  S  S  F  A  V  H  Q  :  D  I  D  G  R  A  T  D  V  A  L  G  W  S  V  A  L  G  S  P  F  T  F  A  T  T  L  E  Q  E  Y  K  S  D  I  F  G  E  R   : G  I  L  L  G  A  V  H  G  V  V  E  S  L  F  R  R  Y  T  E  N  G  M  N  E  E  L  A  Y  K  N  T  V  E  C  I  T  G  V  I  S  K  T  I  S  T  K  :  G  M  L  A  V  Y  D  S  L  T  E  E  G  K  K  E  F  E  A  A  Y  S  A  S  F  Y  P  C  M  E  I  L  Y  E  C  Y  E  D  V  A  T  G  S  E  I  R  S  V  V  L  A  G  R  R  F  Y  :  E  K  E  G  L  P  A  F  P  M  G  K  I  D  Q  T  R  M  W  K  V  G  E  R  V  R  A  T  R  P  A  G  D  L  G  P  L  Y  P  F  T  A  G  V  F  V  A  L  M  M  A  Q  :  I  E  V  L  R  K  K  G  H  S  Y  S  E  I  I  N  E  S  V  I  E  S  V  D  S  L  N  P  F  M  H  A  R  G  V  S  F  M  V  D  N  C  S  T  T  A  R  L  G  S  R  K  W  A  P  R  F  D  Y  N  L  T  Q  Q  A  L  V  A  V  D  N  N  T  P  I  N  R  D  L  I  S  N  F  L  A  D  P  V  H  G  A  I  K  V  C  A  E  L  R  P  T  V  D  I  S  V  T  A  D  A  D  F  V  R  P  E  L  R  Q  S  V  N  *  G  L  Y  G  S  L  C  E  R  A  S  E  N  *  *  C  *  D  F  I  L  L  M  C  V  G  E  G  K  N  T  *  I  C  *  L  I  R  I  L  A  A  F  R  C  L  V  T  L  V  L  A  L  F  Y  V  T  N  N  R  F  K  I  W  E  P  L  *  Q  L  *  N  V  G  Y  G  S  S  M  F  Q  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46654" stop="46852"/>
                    <exon start="46979" stop="46992"/>
                    <exon start="47195" stop="47287"/>
                    <exon start="48204" stop="48269"/>
                    <exon start="48423" stop="48563"/>
                    <exon start="48959" stop="49186"/>
                    <exon start="49272" stop="49389"/>
                    <exon start="49466" stop="49605"/>
                    <exon start="49720" stop="49887"/>
                    <exon start="50418" stop="50573"/>
                    <exon start="50958" stop="51326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFDLSAFHFTIMAAAAATSFSITTSTPPSSSASSTKSLKPSLVGNLGFLSSSTPSLKPLRAQAAVSSGNDEYIVRGGRDLFKYLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEIKSDIVVKIGLRKGSSSFAEARTAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDIDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGVVESLFRRYTENGMNEELAYKNTVECITGVISKTISTKGMLAVYDSLTEEGKKEFEAAYSASFYPCMEILYECYEDVATGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRATRPAGDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYNLTQQALVAVDNNTPINRDLISNFLADPVHGAIKVCAELRPTVDISVTADADFVRPELRQSVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51496" PGL_stop="51002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51496" e_stop="51002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="51496" e_stop="51002" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="51002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACATAAAAAAGTGCTAGTACCAACGTAACTAAACAACGAAAAGCGGCTAAGATTCTTATAAGCTAACAGATTTAAGTATTCTTGCCTTCACCAACACACATCAACAATATGAAATCTCAACATCACTAATTCTCACTTGCTCGCTCACAAAGTGACCCGTAAAGCCCTTAATTGACAGATTGCCTGAGCTCAGGGCGGACAAAATCAGCATCTGCTGTTACAGAAATATCAACTGTGGGTCTTAGTTCAGCACACACTTTAATAGCTCCATGCACGGGATCTGCAAGGAAGTTGCTGATGAGATCACGGTTGATAGGCGTGTTGTTATCCACGGCTACAAGTGCTTGTTGGGTGAGATTGTAATCAAATCGAGGGGCCCACTTCCTGGAACCTAGACGTGCTGTTGTTGAGCAATTGTCAACCATGAATGATACTCCACGAGCGTGCATAAACGGATTCAAAGAATCTACAGACTCGATGACGCTTTCATTG</gDNA_template>
            <first_frame> V  T  *  K  S  A  S  T  N  V  T  K  Q  R  K  A  A  K  I  L  I  S  *  Q  I  *  V  F  L  P  S  P  T  H  I  N  N  M  K  S  Q  H  H  *  F  S  L  A  R  S  Q  S  D  P  *  S  P  *  L  T  D  C  L  S  S  G  R  T  K  S  A  S  A  V  T  E  I  S  T  V  G  L  S  S  A  H  T  L  I  A  P  C  T  G  S  A  R  K  L  L  M  R  S  R  L  I  G  V  L  L  S  T  A  T  S  A  C  W  V  R  L  *  S  N  R  G  A  H  F  L  E  P  R  R  A  V  V  E  Q  L  S  T  M  N  D  T  P  R  A  C  I  N  G  F  K  E  S  T  D  S  M  T  L  S  L </first_frame>
            <second_frame>  L  H  K  K  V  L  V  P  T  *  L  N  N  E  K  R  L  R  F  L  *  A  N  R  F  K  Y  S  C  L  H  Q  H  T  S  T  I  *  N  L  N  I  T  N  S  H  L  L  A  H  K  V  T  R  K  A  L  N  *  Q  I  A  *  A  Q  G  G  Q  N  Q  H  L  L  L  Q  K  Y  Q  L  W  V  L  V  Q  H  T  L  *  *  L  H  A  R  D  L  Q  G  S  C  *  *  D  H  G  *  *  A  C  C  Y  P  R  L  Q  V  L  V  G  *  D  C  N  Q  I  E  G  P  T  S  W  N  L  D  V  L  L  L  S  N  C  Q  P  *  M  I  L  H  E  R  A  *  T  D  S  K  N  L  Q  T  R  *  R  F  H   </second_frame>
            <third_frame>   Y  I  K  K  C  *  Y  Q  R  N  *  T  T  K  S  G  *  D  S  Y  K  L  T  D  L  S  I  L  A  F  T  N  T  H  Q  Q  Y  E  I  S  T  S  L  I  L  T  C  S  L  T  K  *  P  V  K  P  L  I  D  R  L  P  E  L  R  A  D  K  I  S  I  C  C  Y  R  N  I  N  C  G  S  *  F  S  T  H  F  N  S  S  M  H  G  I  C  K  E  V  A  D  E  I  T  V  D  R  R  V  V  I  H  G  Y  K  C  L  L  G  E  I  V  I  K  S  R  G  P  L  P  G  T  *  T  C  C  C  *  A  I  V  N  H  E  *  Y  S  T  S  V  H  K  R  I  Q  R  I  Y  R  L  D  D  A  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0056M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="59849" PGL_stop="57622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59849" e_stop="59781"/>
            <exon e_start="59678" e_stop="59552"/>
            <exon e_start="58934" e_stop="58748"/>
            <exon e_start="57752" e_stop="57633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.990" e_score="0.957"/>
          <exon-intron don_prob="0.951" acc_prob="0.978" e_score="0.921"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="59849" e_stop="59781" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.990">
            <gDNA_intron_boundary i_start="59780" i_stop="59679" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.921">
            <gDNA_exon_boundary e_start="59678" e_stop="59552" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.978">
            <gDNA_intron_boundary i_start="59551" i_stop="58935" i_length="617"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="58934" e_stop="58748" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58747" i_stop="57753" i_length="995"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="57752" e_stop="57633" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59849" stop="59781"/>
              <exon start="59678" stop="59552"/>
              <exon start="58934" stop="58748"/>
              <exon start="57752" stop="57633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATATTTGGCGTTATACTTGGAATACCGAATAATTACTTTCGGAAGGCGGGAAAAAGAATCCCTGT : ATTTCACAGCAAAGACTTAAACTTCTCTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAAAAACTCAAATTTCAGCTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAG : AGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATATGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGGATGGCCCAGAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCACGCCCGATCAGTATGTCCAAGCTGTCATGCCCTTTTATCATGACTT : GTGGTTGCAAGCAAAAGCACTTCCTGGTGCTAATCGCCTTATAAGACATTTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATAAGAAAGTCTC</gDNA_template>
            <first_frame> N  N  I  W  R  Y  T  W  N  T  E  *  L  L  S  E  G  G  K  K  N  P  C  :  I  S  Q  Q  R  L  K  L  L  *  H  T  T  M  G  D  L  H  S  A  E  E  H  G  K  T  Q  I  S  A  V  I  F  D  L  D  G  T  L  L  S  T   : E  H  L  T  K  E  I  L  K  E  F  L  A  G  Y  G  K  V  P  D  K  E  K  E  K  K  R  L  G  M  A  Q  K  E  Y  A  I  G  I  V  S  D  Y  D  L  P  I  T  P  D  Q  Y  V  Q  A  V  M  P  F  Y  H  D  L :   W  L  Q  A  K  A  L  P  G  A  N  R  L  I  R  H  F  H  K  H  G  V  P  F  A  L  A  S  N  S  K  R  K  N  I  D  K  K  V   </first_frame>
            <second_frame>  I  I  F  G  V  I  L  G  I  P  N  N  Y  F  R  K  A  G  K  R  I  P  V :   F  H  S  K  D  L  N  F  S  D  T  Q  Q  W  G  I  F  I  L  Q  K  N  M  E  K  L  K  F  Q  L  S  F  L  I  W  M  V  P  F  *  V  Q  :  S  T  *  Q  R  K  F  *  R  N  F  W  L  D  M  G  R  C  Q  I  R  R  R  K  R  K  D  W  G  W  P  R  K  S  T  L  L  A  L  S  V  I  T  T  S  L  S  R  P  I  S  M  S  K  L  S  C  P  F  I  M  T   : C  G  C  K  Q  K  H  F  L  V  L  I  A  L  *  D  I  S  I  S  M  E  F  P  L  P  L  L  Q  I  P  K  G  K  T  *  I  R  K  S  </second_frame>
            <third_frame>   *  Y  L  A  L  Y  L  E  Y  R  I  I  T  F  G  R  R  E  K  E  S  L   : Y  F  T  A  K  T  *  T  S  L  T  H  N  N  G  G  S  S  F  C  R  R  T  W  K  N  S  N  F  S  C  H  F  *  F  G  W  Y  P  F  E  Y  R :   A  L  D  K  G  N  S  E  G  I  S  G  W  I  W  E  G  A  R  *  G  E  G  K  E  K  I  G  D  G  P  E  R  V  R  Y  W  H  C  Q  *  L  R  P  P  Y  H  A  R  S  V  C  P  S  C  H  A  L  L  S  *  L  :  V  V  A  S  K  S  T  S  W  C  *  S  P  Y  K  T  F  P  *  A  W  S  S  L  C  P  C  F  K  F  Q  K  E  K  H  R  *  E  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59648" stop="59552"/>
                    <exon start="58934" stop="58748"/>
                    <exon start="57752" stop="57635"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTTMGDLHSAEEHGKTQISAVIFDLDGTLLSTEHLTKEILKEFLAGYGKVPDKEKEKKRLGMAQKEYAIGIVSDYDLPITPDQYVQAVMPFYHDLWLQAKALPGANRLIRHFHKHGVPFALASNSKRKNIDKKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="59813" e_stop="59781"/>
            <exon e_start="59683" e_stop="59552"/>
            <exon e_start="58934" e_stop="58748"/>
            <exon e_start="57752" e_stop="57622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.000" e_score="0.879"/>
          <exon-intron don_prob="0.951" acc_prob="0.978" e_score="0.924"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.984"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="59813" e_stop="59781" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59780" i_stop="59684" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="59683" e_stop="59552" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.978">
            <gDNA_intron_boundary i_start="59551" i_stop="58935" i_length="617"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="58934" e_stop="58748" e_length="187"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58747" i_stop="57753" i_length="995"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="57752" e_stop="57622" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59813" stop="59781"/>
              <exon start="59683" stop="59552"/>
              <exon start="58934" stop="58748"/>
              <exon start="57752" stop="57622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACTTTCGGAAGGCGGGAAAAAGAATCCCTGT : ATCAGATTTCACAGCAAAGACTTAAACTTCTCTGACACACAACAATGGGGGATCTTCATTCTGCAGAAGAACATGGAAAAACTCAAATTTCAGCTGTCATTTTTGATTTGGATGGTACCCTTTTGAGTACAG : AGCACTTGACAAAGGAAATTCTGAAGGAATTTCTGGCTGGATATGGGAAGGTGCCAGATAAGGAGAAGGAAAAGAAAAGATTGGGGATGGCCCAGAAAGAGTACGCTATTGGCATTGTCAGTGATTACGACCTCCCTATCACGCCCGATCAGTATGTCCAAGCTGTCATGCCCTTTTATCATGACTT : GTGGTTGCAAGCAAAAGCACTTCCTGGTGCTAATCGCCTTATAAGACATTTCCATAAGCATGGAGTTCCCTTTGCCCTTGCTTCAAATTCCAAAAGGAAAAACATAGATAAGAAAGTCTCTCTCCAAGAAG</gDNA_template>
            <first_frame> L  L  S  E  G  G  K  K  N  P  C  :  I  R  F  H  S  K  D  L  N  F  S  D  T  Q  Q  W  G  I  F  I  L  Q  K  N  M  E  K  L  K  F  Q  L  S  F  L  I  W  M  V  P  F  *  V  Q  :  S  T  *  Q  R  K  F  *  R  N  F  W  L  D  M  G  R  C  Q  I  R  R  R  K  R  K  D  W  G  W  P  R  K  S  T  L  L  A  L  S  V  I  T  T  S  L  S  R  P  I  S  M  S  K  L  S  C  P  F  I  M  T   : C  G  C  K  Q  K  H  F  L  V  L  I  A  L  *  D  I  S  I  S  M  E  F  P  L  P  L  L  Q  I  P  K  G  K  T  *  I  R  K  S  L  S  K  K </first_frame>
            <second_frame>  Y  F  R  K  A  G  K  R  I  P  V :   S  D  F  T  A  K  T  *  T  S  L  T  H  N  N  G  G  S  S  F  C  R  R  T  W  K  N  S  N  F  S  C  H  F  *  F  G  W  Y  P  F  E  Y  R :   A  L  D  K  G  N  S  E  G  I  S  G  W  I  W  E  G  A  R  *  G  E  G  K  E  K  I  G  D  G  P  E  R  V  R  Y  W  H  C  Q  *  L  R  P  P  Y  H  A  R  S  V  C  P  S  C  H  A  L  L  S  *  L  :  V  V  A  S  K  S  T  S  W  C  *  S  P  Y  K  T  F  P  *  A  W  S  S  L  C  P  C  F  K  F  Q  K  E  K  H  R  *  E  S  L  S  P  R   </second_frame>
            <third_frame>   T  F  G  R  R  E  K  E  S  L   : Y  Q  I  S  Q  Q  R  L  K  L  L  *  H  T  T  M  G  D  L  H  S  A  E  E  H  G  K  T  Q  I  S  A  V  I  F  D  L  D  G  T  L  L  S  T   : E  H  L  T  K  E  I  L  K  E  F  L  A  G  Y  G  K  V  P  D  K  E  K  E  K  K  R  L  G  M  A  Q  K  E  Y  A  I  G  I  V  S  D  Y  D  L  P  I  T  P  D  Q  Y  V  Q  A  V  M  P  F  Y  H  D  L :   W  L  Q  A  K  A  L  P  G  A  N  R  L  I  R  H  F  H  K  H  G  V  P  F  A  L  A  S  N  S  K  R  K  N  I  D  K  K  V  S  L  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59648" stop="59552"/>
                    <exon start="58934" stop="58748"/>
                    <exon start="57752" stop="57623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTTMGDLHSAEEHGKTQISAVIFDLDGTLLSTEHLTKEILKEFLAGYGKVPDKEKEKKRLGMAQKEYAIGIVSDYDLPITPDQYVQAVMPFYHDLWLQAKALPGANRLIRHFHKHGVPFALASNSKRKNIDKKVSLQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62730" PGL_stop="60821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62730" e_stop="62621"/>
            <exon e_start="62511" e_stop="62363"/>
            <exon e_start="61389" e_stop="61334"/>
            <exon e_start="61218" e_stop="60821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62621" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62511" e_stop="62363" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="62362" i_stop="61390" i_length="973"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61389" e_stop="61334" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="61218" e_stop="60821" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62730" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589723" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62730" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62704" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354831" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62688" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62683" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62683" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62669" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253311" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62667" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="61040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62642" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62501" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62501" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62498" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62487" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62458" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62427" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62406" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62394" stop="62363"/>
              <exon start="61389" stop="61334"/>
              <exon start="61218" stop="60982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61370" stop="61334"/>
              <exon start="61218" stop="60916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61112" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTACAACTGCTGCGGAGGCGGAATTAGCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG : GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG : AAGATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG : TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATTATTTTCTCTTTTTTCATTTAGTTTGGAGCTGAGCATATATGCTACTCTATGTTGGTGCAT</gDNA_template>
            <first_frame> A  A  T  T  A  A  E  A  E  L  A  P  T  H  P  I  R  L  G  L  A  L  N  F  S  V  F  Y  Y  E  I  M  N  S  P  E  R :   A  C  H  L  A  K  Q  A  F  D  E  A  I  S  E  L  D  S  L  N  E  D  S  Y  K  D  S  T  L  I  M  Q  L  L  R  D  N  L  T  L  W  T  S  D  L  P  E  D  A   : E  D  A  Q  K  G  D  A  T  N  K  A  G  G  G  E  D  A  E  :  *  M  G  L  I  V  R  T  T  M  C  I  W  R  C  D  D  K  D  T  P  R  G  M  L  V  C  *  V  L  V  D  T  S  I  M  G  L  S  C  Q  I  L  H  L  L  I  G  C  L  Q  L  S  V  *  F  V  S  L  C  Y  F  R  S  P  Y  S  E  L  F  Q  S  L  D  N  C  W  S  I  G  G  F  I  F  Q  M  T  A  A  A  K  W  R  I  S  A  I  C  L  S  S  H  P  Y  Y  L  N  I  T  K  F  P  L  F  S  L  F  S  F  S  L  E  L  S  I  Y  A  T  L  C  W  C   </first_frame>
            <second_frame>  Q  L  Q  L  L  R  R  R  N  *  H  P  L  I  P  F  V  W  D  W  L  *  I  S  L  F  S  T  M  R  S  *  I  H  L  K   : G  H  A  I  L  Q  N  R  P  S  M  K  Q  Y  L  S  W  I  A  *  M  R  I  P  T  K  T  A  P  *  L  C  N  F  *  G  T  T  S  P  C  G  L  L  I  F  Q  R  M  L  :  K  M  P  K  R  E  M  P  Q  T  K  L  V  E  V  K  M  Q  S :   E  W  A  *  *  L  E  L  L  C  V  F  G  G  V  T  T  R  I  R  Q  G  G  C  *  F  V  K  S  *  *  I  L  L  L  W  V  C  R  V  R  F  F  T  C  *  L  V  V  C  N  S  V  C  N  L  Y  P  C  A  I  S  V  L  R  I  V  S  C  F  S  L  *  I  I  A  G  L  *  V  V  L  F  F  R  *  L  P  Q  P  N  G  G  Y  Q  L  F  A  C  P  L  T  L  I  I  S  I  S  L  N  F  H  Y  F  L  F  F  H  L  V  W  S  *  A  Y  M  L  L  Y  V  G  A  </second_frame>
            <third_frame>   S  Y  N  C  C  G  G  G  I  S  T  H  S  S  H  S  S  G  T  G  F  K  F  L  C  F  L  L  *  D  H  E  F  T  *  K  :  G  M  P  S  C  K  T  G  L  R  *  S  N  I  *  A  G  *  P  E  *  G  F  L  Q  R  Q  H  L  D  Y  A  T  S  K  G  Q  P  H  L  V  D  F  *  S  S  R  G  C  * :   R  C  P  K  G  R  C  H  K  Q  S  W  W  R  *  R  C  R   : V  N  G  P  N  S  *  N  Y  Y  V  Y  L  E  V  *  R  Q  G  Y  A  K  G  D  V  S  L  L  S  L  S  R  Y  F  Y  Y  G  S  V  V  S  D  S  S  L  V  N  W  L  S  A  T  Q  C  V  I  C  I  P  V  L  F  P  F  S  V  *  *  V  V  S  V  F  R  *  L  L  V  Y  R  W  F  Y  F  S  D  D  C  R  S  Q  M  E  D  I  S  Y  L  L  V  L  S  P  L  L  S  Q  Y  H  *  I  S  I  I  F  S  F  F  I  *  F  G  A  E  H  I  C  Y  S  M  L  V  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62730" stop="62621"/>
                    <exon start="62511" stop="62363"/>
                    <exon start="61389" stop="61334"/>
                    <exon start="61218" stop="61216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AATTAAEAELAPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPEDAEDAQKGDATNKAGGGEDAE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61053" stop="60823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVSLCYFRSPYSELFQSLDNCWSIGGFIFQMTAAAKWRISAICLSSHPYYLNITKFPLFSLFSFSLELSIYATLCWC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62700" e_stop="62621"/>
            <exon e_start="62511" e_stop="62363"/>
            <exon e_start="61386" e_stop="61334"/>
            <exon e_start="61218" e_stop="60881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.369" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62700" e_stop="62621" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62620" i_stop="62512" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62511" e_stop="62363" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.369">
            <gDNA_intron_boundary i_start="62362" i_stop="61387" i_length="976"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61386" e_stop="61334" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="61333" i_stop="61219" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61218" e_stop="60881" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62700" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61386" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62700" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61386" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62700" stop="62621"/>
              <exon start="62511" stop="62363"/>
              <exon start="61386" stop="61334"/>
              <exon start="61218" stop="61063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62387" stop="62363"/>
              <exon start="61386" stop="61334"/>
              <exon start="61218" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61370" stop="61334"/>
              <exon start="61218" stop="60916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61112" stop="60881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607622" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACCCACTCATCCCATTCGTCTGGGACTGGCTTTAAATTTCTCTGTTTTCTACTATGAGATCATGAATTCACCTGAAAG : GGCATGCCATCTTGCAAAACAGGCCTTCGATGAAGCAATATCTGAGCTGGATAGCCTGAATGAGGATTCCTACAAAGACAGCACCTTGATTATGCAACTTCTAAGGGACAACCTCACCTTGTGGACTTCTGATCTTCCAGAGGATGCTG : ATGCCCAAAAGGGAGATGCCACAAACAAAGCTGGTGGAGGTGAAGATGCAGAG : TGAATGGGCCTAATAGTTAGAACTACTATGTGTATTTGGAGGTGTGACGACAAGGATACGCCAAGGGGGATGTTAGTTTGTTAAGTCTTAGTAGATACTTCTATTATGGGTCTGTCGTGTCAGATTCTTCACTTGTTAATTGGTTGTCTGCAACTCAGTGTGTAATTTGTATCCCTGTGCTATTTCCGTTCTCCGTATAGTGAGTTGTTTCAGTCTTTAGATAATTGCTGGTCTATAGGTGGTTTTATTTTTCAGATGACTGCCGCAGCCAAATGGAGGATATCAGCTATTTGCTTGTCCTCTCACCCTTATTATCTCAATATCACTAAATTTCCATT</gDNA_template>
            <first_frame> A  P  T  H  P  I  R  L  G  L  A  L  N  F  S  V  F  Y  Y  E  I  M  N  S  P  E  R :   A  C  H  L  A  K  Q  A  F  D  E  A  I  S  E  L  D  S  L  N  E  D  S  Y  K  D  S  T  L  I  M  Q  L  L  R  D  N  L  T  L  W  T  S  D  L  P  E  D  A   : D  A  Q  K  G  D  A  T  N  K  A  G  G  G  E  D  A  E  :  *  M  G  L  I  V  R  T  T  M  C  I  W  R  C  D  D  K  D  T  P  R  G  M  L  V  C  *  V  L  V  D  T  S  I  M  G  L  S  C  Q  I  L  H  L  L  I  G  C  L  Q  L  S  V  *  F  V  S  L  C  Y  F  R  S  P  Y  S  E  L  F  Q  S  L  D  N  C  W  S  I  G  G  F  I  F  Q  M  T  A  A  A  K  W  R  I  S  A  I  C  L  S  S  H  P  Y  Y  L  N  I  T  K  F  P   </first_frame>
            <second_frame>  H  P  L  I  P  F  V  W  D  W  L  *  I  S  L  F  S  T  M  R  S  *  I  H  L  K   : G  H  A  I  L  Q  N  R  P  S  M  K  Q  Y  L  S  W  I  A  *  M  R  I  P  T  K  T  A  P  *  L  C  N  F  *  G  T  T  S  P  C  G  L  L  I  F  Q  R  M  L  :  M  P  K  R  E  M  P  Q  T  K  L  V  E  V  K  M  Q  S :   E  W  A  *  *  L  E  L  L  C  V  F  G  G  V  T  T  R  I  R  Q  G  G  C  *  F  V  K  S  *  *  I  L  L  L  W  V  C  R  V  R  F  F  T  C  *  L  V  V  C  N  S  V  C  N  L  Y  P  C  A  I  S  V  L  R  I  V  S  C  F  S  L  *  I  I  A  G  L  *  V  V  L  F  F  R  *  L  P  Q  P  N  G  G  Y  Q  L  F  A  C  P  L  T  L  I  I  S  I  S  L  N  F  H  </second_frame>
            <third_frame>   T  H  S  S  H  S  S  G  T  G  F  K  F  L  C  F  L  L  *  D  H  E  F  T  *  K  :  G  M  P  S  C  K  T  G  L  R  *  S  N  I  *  A  G  *  P  E  *  G  F  L  Q  R  Q  H  L  D  Y  A  T  S  K  G  Q  P  H  L  V  D  F  *  S  S  R  G  C  * :   C  P  K  G  R  C  H  K  Q  S  W  W  R  *  R  C  R   : V  N  G  P  N  S  *  N  Y  Y  V  Y  L  E  V  *  R  Q  G  Y  A  K  G  D  V  S  L  L  S  L  S  R  Y  F  Y  Y  G  S  V  V  S  D  S  S  L  V  N  W  L  S  A  T  Q  C  V  I  C  I  P  V  L  F  P  F  S  V  *  *  V  V  S  V  F  R  *  L  L  V  Y  R  W  F  Y  F  S  D  D  C  R  S  Q  M  E  D  I  S  Y  L  L  V  L  S  P  L  L  S  Q  Y  H  *  I  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0056M08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62700" stop="62621"/>
                    <exon start="62511" stop="62363"/>
                    <exon start="61386" stop="61334"/>
                    <exon start="61218" stop="61216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPEDADAQKGDATNKAGGGEDAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 398 chains have been computed
$ 
$ memory statistics:
$ 460336 bytes spliced alignments in total
$ 212 spliced alignments have been stored
$ 2171 bytes was the average size of a spliced alignment
$ 18144 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 427 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 11:57:04
-->
