<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-08 02:29:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321489" ref_strand="+" ref_description="SGN-U321489        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT1G17110.1 | Symbol: None | ubiquitin-specific protease 15 (UBP15), almost identical to ubiquitin-specific protease 15 GI:11993475 (Arabidopsis thaliana), 7 amino acid difference | chr1:5845668-5850038 REVERSE | Aliases: F20D23.20, F20D23_20 (evalue: 2e-19, score=93.2) genbank/nr: gi|50252264|dbj|BAD28270.1| putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (evalue: 4e-23, score=111)">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtctagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaatggaacaactggtccttttttgttattttgcagttgtaaatatgcttgctgtagctaattatcttgattctttacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7971" stop="9397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8271" g_stop="9100" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="830" r_length="830" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U321489" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8271" e_stop="9100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTCTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCCTTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318899" ref_strand="+" ref_description="SGN-U318899        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | SOUL heme-binding family protein, similar to SOUL protein (Mus musculus) GI:4886906; contains Pfam profile PF04832: SOUL heme-binding protein | chr1:5844729-5846215 FORWARD | Aliases: F20D23.21, F20D23_21(evalue: 5e-64, score=241) genbank/nr: gi|34903864|ref|NP_913279.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|8096573|dbj|BAA96146.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|8096616|dbj|BAA96188.1| unnamed protein product [Oryza sativa (japonica cultivar-group)](evalue: 2e-65, score=251)">
      <seq>gaaaatttcattgagacaaattaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatattgcaaataagatagattgtgtaatacaatctgattctgagagtttggtggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10595" stop="9034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10296" g_stop="9996" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9329" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="880" r_length="579" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U318899" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10296" e_stop="9996"/>
          <exon e_start="9907" e_stop="9329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCT</genome_strand>
        <mrna_strand>GAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345983" ref_strand="+" ref_description="SGN-U345983        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 7e-09, score=58.9) genbank/nr: Integrase,(evalue: 1e-54, score=177)">
      <seq>cttttctccattctcttggcattattcatcacacatcttgcccctatactcctgaacaaaatggtgttgccgaacgcaaacaccgtcacctcattgaaaccgtcgtcactctccttcatgagtctcatctccctgcatgaggcgttggccactgccaactatctcatcaaccacatgcccaaaccctccctctctaacacatctccttatgaatgtctctacacacaccgttcggattacactcaccttcgcccctttggttgtcttgcctatccttggctacgccctcacactcaacacaaacttcaactccggtccacaccatgcatctttctaggctaccatccctccataaaaggatacaaatgttttgaacccatctctcaaaaaacatatgtctctcgtcatattcgttttatcgaggaggactttccctatccccggttaagttctgtcactgccacgtccaacccactcggtattactccaatctttccaccgagctcacatggccttgtaccagcacccattaacccatccatcatacacacaccacccaatcccaacactctcatcccatctggatcacccagcacccacaatttacccatcccaccaattttcaaccctcctcattaacaacctccaccagctgaaacagcaccacctccacccccacccccatcccctttacatcacatgcaaacctattccaaatccggcattttcaagcccaaagcctacaccaccactttacctgctccctctccctctgaacctattacctacaaacaagcatctaccaacccccttttggtgtcaggctaaggatgatgaatacaggtctcttattaatcaacatacttggcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20190" stop="18711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19890" g_stop="19011" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U345983" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19890" e_stop="19011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACA--ACC-CCT---CCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCC-TTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</genome_strand>
        <mrna_strand>CTTTTCTCCATTCTCTTGGCATTATTCATCACACATCTTGCCCCTATACTCCTGAACAAAATGGTGTTGCCGAACGCAAACACCGTCACCTCATTGAAACCGTCGTCACTCTCCTTCATGAGTCTCATCTCCCTGCA----------T-GAGGCGTTGGCCACTGCCAACTATCTCATCAACCACATGCCCAAACCCTCCCTCTCTAACACATCTCCTTATGAATGTCTCTACACACACCGTTCGGATTACACTCACCTTCGCCCCTTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACTCCGGTCCACACCATGCATCTTTCTAGGCTACCATCCCTCCATAAAAGGATACAAATGTTTTGAACCCATCTCTCAAAAAACATATGTCTCTCGTCATATTCGTTTTATCGAGGAGGACTTTCCCTATCCCCGGTTAAGTTCTGTCACTGCCACGTCCAACCCACTCGGTATTACTCCAATCTTTCCACCGAGCTCACATGGCCTTGTACCAGCACCCATTAACCCATCCATCATACACACACCACCCAATCCCAACACTCTCATCCCATCTGGATCACCCAGCACCCACAATTTACCCATCCCACCAATTTTCAACCCTCCTCATTAACAACCTCCACCAGCTGAAACAGCACCACCTCCACCCCCACCCCCATCCCCTTTACATCACATGCAAACCTATTCCAAATCCGGCATTTTCAAGCCCAAAGCCTACACCACCACTTTACCTGCTCCCTCTCCCTCTGAACCTATTACCTACAAACAAGCATCTACCAACCCCCTTTTGGTGTCAGGCTAAGGATGATGAATACAGGTCTCTTATTAATCAACATACTTGGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313744" ref_strand="+" ref_description="SGN-U313744        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: | Symbol: None | acetolactate synthase, chloroplast / acetohydroxy-acid synthase (ALS), nearly identical to SP:P17597 Acetolactate synthase, chloroplast precursor (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid synthase) (ALS) {Arabidopsis thaliana} | chr3:18012297-18014566 REVERSE | Aliases: T8P19.70(evalue: 2e-103, score=371) genbank/nr: gi|226027|prf||1407140B acetolactate synthase SuRB(evalue: 1e-120, score=435)">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttgcctaaattacctaatgagatgcttttggaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20343" stop="21786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20643" g_stop="21486" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="844" r_length="844" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U313744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20643" e_stop="21486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAA</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313745" ref_strand="-" ref_description="SGN-U313745        Tomato 200607 #1 [48 ESTs aligned] arabidopsis/peptide: | Symbol: None | acetolactate synthase, chloroplast / acetohydroxy-acid synthase (ALS), nearly identical to SP:P17597 Acetolactate synthase, chloroplast precursor (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid synthase) (ALS) {Arabidopsis thaliana} | chr3:18012297-18014566 REVERSE | Aliases: T8P19.70(evalue: 0, score=1011) genbank/nr: gi|19779|emb|CAA30485.1| unnamed protein product [Nicotiana tabacum] >gi|124369|sp|P09114|ILV2_TOBAC Acetolactate synthase II, chloroplast precursor (Acetohydroxy-acid synthase II) (ALS II) (evalue: 0, score=1173)">
      <seq>gggggaggggggggcgccccccccccccccttnnnnttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttacttaattggtgctgccaatagaacaagaaattttttttttttttttttttttttccttcacacaatgaaaaacttttaagtaaacataaatattaagtttattttagataatacaatgccttgaactagttatgtagcttctcaaagtcaataggaacgtctcccatcaccctccgtaatcacatctttgaaagcaccgccactgggaatcatcggtagaacatgctcctgatgaggtacaatcacatccaacaagtatggcccaggagtgtctaacatcttttgaatggcagctctaagatcatccctgtgtgacactcttgcagcaggtacgccacaagcctctgcaaatttcagcatattagggaagatctcttcctcattagcaggattacccaagtaagtgtgtgctctgttagccttatagaatcgatcctcccactgaaccaccattcccaagtgttgattattcagcaacataatcttaactgggagattctccaccttaattgttgccaactcctgcacattcatgataaaactcccatcaccatcaatatcaaccacaatctcacccggtcttccaacagccgcacctatagcagcaggcaaaccaaatcccattgctcctaatccaccagatgtaagccattggcgtggctttttgtacttgtagtgttgggcagcccacatttggtgttgccccacaccagtactaatgatggcatttccgttagttaactcatcaagaacctgaatagcatattggggagggatggcttcaccgaaagtcttaaaattcaatgggtacttcaccttctgctccgttaactcctgcctccaagcagaaaagtccaacttcagcttaccttttttactctcgaatatggaattcaaaccctgtaatgccaacttgatatctgcacagatggaaacatgaggttgcttgttctttccaatctcagccgaatcaatatcaatatggacaatcttagctcggctagcaaaagcttccaatttaccagtaactcgatcatcaaacctcaccccaaatgcaagcaacaaatcactactatccaccgcataattagcatacacagtcccatgcatacccaacatttgaagagaaagctcatccccacttggaaaagctccaagacccatcaaagtactcgccacaggaatacccgtaagctccacaaagcgtctcagctcctcacttgattgcgaacacccaccacccacatacaaaacaggcttcttcgactcggaaatcagcctaacaatttgttccaaaagcatttcattaggcaatttaggtaacctagacatgtaaccaggcaacctcattggctgatcccaattaggtatcaccaattgttgctgaatatccttaggtacatcaatcaaaactgggccaggccgtcccgatttcgcaagaaaaaatgcttcacgaacaaccctaggaatatcttctacatccataacaagataattatgcttcgtaatagatctcgttacctcaacaataggcgtttcctggaacgcatcagtaccaatcatcctccttggcacttgacctgtaatagcaacaatcggaatactatctaacaaagcatccgcaagaccactaacaagatttgtagctccgggaccagaggtagcaatgcaaacaccagggaacccagtagcccgtgcgtaaccctctgcagcaaacacaccaccttgctcatgacgtggtagcacattacgaataatattcgaacgtgtcaaagcttgatgaatctccatagaagcacctcctgggtatgcaaatacatccgtaacaccttccctttcaagtgcctccacaagaacatcacaaccctttctgggttcgtcaggggcgaaacgggaaacgaatgtttcaggttcagaaacgtcgttatgggtggtagtggatatgacgacattggcaacggcaaaaccacgacgattatgttgagcgtggatgagatgaaggggtgaggctttttgtgggtgattgtggaaagagaaggtagatctaggtagaatggtggaagatttggaggaagatggaggtagggttttggagaaacatggagatggtgaggcagcagccgccattgttggtcgataaaggtgagagaagtgaaaggaagaggcaaaatggctataagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="110131" stop="20355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24836" g_stop="24788" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.388"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24787" i_stop="24699" i_length="89">
            <donor d_prob="0.732" d_score="0.39"/>
            <acceptor a_prob="0.000" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24698" g_stop="24643" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="104" r_length="55" r_score="0.536"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24642" i_stop="23368" i_length="1275">
            <donor d_prob="0.996" d_score="0.52"/>
            <acceptor a_prob="0.744" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23367" g_stop="23339" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="131" r_length="27" r_score="0.621"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23338" i_stop="22955" i_length="384">
            <donor d_prob="0.836" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22954" g_stop="22936" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="150" r_length="19" r_score="0.526"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22935" i_stop="22723" i_length="213">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22722" g_stop="20655" g_length="2068"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="2221" r_length="2071" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U313745" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>2221</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313745" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24836" e_stop="24788"/>
          <exon e_start="24698" e_stop="24643"/>
          <exon e_start="23367" e_stop="23339"/>
          <exon e_start="22954" e_stop="22936"/>
          <exon e_start="22722" e_stop="20655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGAATGATGAACAAGCTCATCTTCGTCATGCTGGGCTATTTTCGCGGTTGATTGAGATACTCCTTTCACTGAGATTTTTCCTTTACCAATATGGACTGGTGTATCACCTTGATATATCCAATCAAAGTAAAAATATTGTTGTCTATGTGCTCTCATGGGTTGTCATTGCTTTTATTTTCCTCTTGATGAAGGTAAGCCACTTCCTGCACATTGCCTGTCTCTCTTTTACAATGCTGATATACTTCCAGTTTGTGAATACTAGAAGACCCCACTTTGTGGAACTATACTGAGTATTGACGCTGTTGCTGAATTTTCCAGATGCTGAATATCGGAAGGCGGTTTTTAAGCGCAAACCATCACTTAACTTTCCGGTTGTTTAAAGCTTGTCTATTTCTAGGAGTTGTGGCAACTATTATTACCCTGTCTATCATATGTCATCTGTCTGTGAAAGACTTGATTGTCTGCTGTCTAGCTTTTCTACCAACTGGTTGGGGCTTGATATTGGTAAGTCCAGTATATGTTCTTGCCTATTTTGCTACACATACTTCCTCCTCTTCTCTGTCCTGTTTTTGTCTCGTTTTGAATTGCATAAATGCTGCTGTTCTCCTCAGGTTGGCCAAGTAGTGAGACCAAAGATTGAAGGTACTGGATTGTGGCACTTCACTCGAGTGTTTGCTCGAGCTTATGACTATGGAATGGGTGTTGTTCTTTTCGCGCCTTTAGCTTCACTGGCTTGGCTTCCAATAATTTCAGCTTTCCAAACTCGGTTTCTGTTCAATGAGGCTTTCAGTAGGAGGCTGCAAATTCAGCCAATTCTTGCAGGAAAGAAGAAACATTAGTGATCTCTATTTGACTTTACATTACATAACTTGCATGTACACATATTGTTCTGTTACTGTAGAATAGCAAAATACTGGTAAAAACATGTTGTCGTGCGGATATACTCCATAGGGAAAACAATCGATTGTATAATTCTTTCATGTACAGGTATAGTTGTATACTAGACTATTGTGCATAGACGCTAATGAATAATACGCATTCTTAAAATCTCAAGGTTATCATCTTTCAGTAGAGTGTTGGTCAAAACTGAAAAATAAGTTCGTCCAAGTGTAACACCAAATATGTTTTATATTACATCGCGTATATCACAATTCTACATCAAGAGAGAAGTCTCAATACCGGAGCTGGCTGTGGAACTGTTGTCAACAGAAGGCGCTACAACTGGAGGTGAATCAACTGATGAAGGTTGAGACTCTGCATCAGAAATATCAGATTCCACAGAGCTCATTCTTTCGGTCTCTGATGATTCTACTTCCTCTTTAGATTTCCCTGATGACTTCCCAGACATCACTTCCTTTATGCCACCACCAACAGATTTGCCAGCATCTTTAAGGATTCTCTTCGTCTTGCCCCATTTGTGAAACTTTTCCCATTTCCTGCACCGTTCTCTTTTCCATCTTCTGTAGGTGTTGTTGCTAATGATGAAGGCAAAATGGTGTCATCCACTATAATCTTCACTCTGATATCCTTGGCATTAACTGCCCTAAGATTCACATGCAGAGATGAAATAGGCTCTCCAAGATTGCTAGAACTTCTCCGGAGAACTGAGCTGATCTTATGTAAACCCCTGTGTAAACGACCTGGGGAATCCCCTAGGTAATTCAGGCTTAAACCAACATTTACAGTGAATAAGAAGATACCAAGGTCACCCACAGAACTGTAACGCAGAGCATACATGGTAAAAGTCAACGGACACACGGGGAGCAAAAGGGGTCAAAGATTACCTCATCAAGAAATAAAATAGAGGCCTTCTTCAGTAGAGCCCTTGCAACAGCAATTAGCTGAAAACAGAAAGATGGCGTAATATAACTCTGCAAACTTGTGCTAATCTGATTTTGGCATTCACCTTTTGAATCAGCACTCTCTGAAAAATTTGAGCCCTTAAGCTGGACATAGCCTTCTCCCAAATGGAATTCATGTTCACCAAATAACATAGAATGTAACAAAGCTGATTTATCGAACTTAACTACTTCACTTGTAATTAATCTTAGTCATACTAAATAGAGCTCCAAATACTTAATTGGTGCTGCCAATAGAACAAGAAATTCTAAAATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTCCAAGCAGAAAAGTCCAACTTCAGCTTACCTTTTTTACTCTCGAATATGGAATTCAAACCCTGTAATGCCAACTTGATATCTGCACAGATGGAAACATGAGGTTGCTTGTTCTTTCCAATCTCAGCCGAATCAATATCAATATGGACAATCTTAGCTCGGCTAGCAAAAGCTTCCAATTTACCAGTAACTCGATCATCAAACCTCACCCCAAATGCAAGCAACAAATCACTACTATCCACCGCATAATTAGCATACACAGTCCCATGCATACCCAACATTTGAAGAGAAAGCTCATCCCCACTTGGAAAAGCTCCAAGACCCATCAAAGTACTCGCCACAGGAATACCCGTAAGCTCCACAAAGCGTCTCAGCTCCTCACTCGACTGTGAACACCCACCACCCACATACAAAACAGGCTTCTTTGACTCTGAAATCAGCCTAACAATTTGTTCCAAAAGCATCTCATTAGGTAATTTAGGCAACCTAGACATGTAACCAGGCAACCTCATTGGCTGATCCCAATTAGGTATCACCAATTGTTGCTGAATATCCTTAGGAACATCAATCAAAACAGGTCCAGGCCGTCCTGATTTCGCTAGAAAAAACGCTTCACGAACAACCCTAGGAATATCCTCTACATCCATAACAAGATAATTATGCTTCGTAATGGATCTCGTTACCTCAACAATAGGAGTTTCCTGAAACGCATCAGTACCAATCATCCTCCTCGGCACTTGACCGGTAATAGCAACAATCGGGATACTATCCAACAAAGCATCAGCAAGACCGCTAACAAGATTCGTAGCTCCCGGACCAGATGTAGCAATACAAACACCAGGGAACCCAGTAGCCCGTGCGTAACCCTCTGCAGCAAACACACCACCCTGTTCATGACGTGGCAGCACATTACGAATAATATTTGAACGTGTCAAAGCCTGATGAATCTCCATGGAAGCACCTCCTGGGTATGCAAACACATCCTTAACCCCTTCCCTTTCAAGTGCCTCCACAAGAACATCACAACCCTTTCTGGGTTCGTCAGGGGCGAAACGGGAAACAAAGATTTCGGGTTCAGAAACGTCGTCATGCGTCGTGGTTGATAGGATGACATTTGAAACAG-TGAA--ACGGCTATGATGTTGGGTGTGTGTAAGGTGAAGGGGTGATGCTTTTTTAGGGTGATTGTGGAAAGTANAGGTAGATTTGGGAAGAAGGGTGGAAGATTTTGATGAAGATGGAGGTAGGGTNNTGGAAAAAACAGGAGATGGAGATGCAGNCGNC</genome_strand>
        <mrna_strand>GGGGGAGGGGGGGGCGCCCCCCCCCCCCCCTTNNNNTTTTTTTTTTTTT.........................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTAA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGCTGCCAAT-A-GAACAAGAAATT................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTT.....................................................................................................................................................................................................................TTTCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTCCAAGCAGAAAAGTCCAACTTCAGCTTACCTTTTTTACTCTCGAATATGGAATTCAAACCCTGTAATGCCAACTTGATATCTGCACAGATGGAAACATGAGGTTGCTTGTTCTTTCCAATCTCAGCCGAATCAATATCAATATGGACAATCTTAGCTCGGCTAGCAAAAGCTTCCAATTTACCAGTAACTCGATCATCAAACCTCACCCCAAATGCAAGCAACAAATCACTACTATCCACCGCATAATTAGCATACACAGTCCCATGCATACCCAACATTTGAAGAGAAAGCTCATCCCCACTTGGAAAAGCTCCAAGACCCATCAAAGTACTCGCCACAGGAATACCCGTAAGCTCCACAAAGCGTCTCAGCTCCTCACTTGATTGCGAACACCCACCACCCACATACAAAACAGGCTTCTTCGACTCGGAAATCAGCCTAACAATTTGTTCCAAAAGCATTTCATTAGGCAATTTAGGTAACCTAGACATGTAACCAGGCAACCTCATTGGCTGATCCCAATTAGGTATCACCAATTGTTGCTGAATATCCTTAGGTACATCAATCAAAACTGGGCCAGGCCGTCCCGATTTCGCAAGAAAAAATGCTTCACGAACAACCCTAGGAATATCTTCTACATCCATAACAAGATAATTATGCTTCGTAATAGATCTCGTTACCTCAACAATAGGCGTTTCCTGGAACGCATCAGTACCAATCATCCTCCTTGGCACTTGACCTGTAATAGCAACAATCGGAATACTATCTAACAAAGCATCCGCAAGACCACTAACAAGATTTGTAGCTCCGGGACCAGAGGTAGCAATGCAAACACCAGGGAACCCAGTAGCCCGTGCGTAACCCTCTGCAGCAAACACACCACCTTGCTCATGACGTGGTAGCACATTACGAATAATATTCGAACGTGTCAAAGCTTGATGAATCTCCATAGAAGCACCTCCTGGGTATGCAAATACATCCGTAACACCTTCCCTTTCAAGTGCCTCCACAAGAACATCACAACCCTTTCTGGGTTCGTCAGGGGCGAAACGGGAAACGAATGTTTCAGGTTCAGAAACGTCGTTATGGGTGGTAGTGGATATGACGACATTGGCAACGGCAAAACCACGACGATTATGTTGAGCGTGGATGAGATGAAGGGGTGAGGCTTTTTGTGGGTGATTGTGGAAAGAGAAGGTAGATCTAGGTAGAATGGTGGAAGATTTGGAGGAAGATGGAGGTAGGGTTTTGGAGAAACATGGAGATGGTGAGGCAGCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321007" ref_strand="+" ref_description="SGN-U321007        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tatcttcttattcactgtaaatgttggtttaagcctgaattacctaggggattccccaggtcgtttacacaggggtttacataagatcagctcagttctccggagaagttctagcaatcttggagagcctatttcatctctgcatgtgaatcttagggcagttaatgccaaggatatcagagtgaagattatagtggatgacaccattttgccttcatcattagcaacaacacctacagaagatggaaaagagaacggtgcaggaaatgggaaaagtttcacaaatggggcaagacgaagagaatccttaaagatgctggcaaatctgttggtggtggcataaaggaagtgatgtctgggaagtcatcagggaaatctaaagaggaagtagaatcatcagagaccgaaagaatgagctctgtggaatctgatatttctgatgcagagtctcaaccttcatcagttgattcacctccagttgtagcgccttctgttgacaacagttccacagccagctccggtattgagacttctctcttgatgtagaattgtgatatacgcgatgtaatataaaacatatttggtgttacacttggacgaacttatttttcagttttgaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22835" stop="24059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23135" g_stop="23759" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U321007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23135" e_stop="23759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</genome_strand>
        <mrna_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U331467" ref_strand="+" ref_description="SGN-U331467        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 48 protein, contains similarity to glucan synthases | chr3:4892650-4902635 FORWARD | Aliases: MIE1.7(evalue: 1e-73, score=271) genbank/nr: gi|9294379|dbj|BAB02389.1| glucan synthase-like protein [Arabidopsis thaliana](evalue: 7e-72, score=271)">
      <seq>ttcaacagcctgatatcagtggttacgatttatgtgtttctatacggtcagctctacatggtattaagtggtctacaaagagcactactagttgaggcaaaactacaaaacataaagtcactggaaacagctctagcttctcaatcatttatccagcttggacttttaacagggttaccaatggtcattgagttgggactagagcgcggttatcttaatgctcttaaagattttgttctgatgcaactgcagctggctgcagttttctttactttctcctatggaacaaagtctcattactatggcagaacaattcttcatggaggtgctaagtatagacctactggtcgtaaagttgtggtttttcatgccagcttcactgaaaactatagactttactctcggagtcacttcgtcaaaggatttgaacttctactcctgttgatagcatatgatttgtttagacgatcgtatgagagcaatttggcctatgttttaactacatatgcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="25801" stop="24690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25578" g_stop="25567" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25566" i_stop="25492" i_length="75">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25491" g_stop="24990" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="514" r_length="502" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U331467" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25578" e_stop="25567"/>
          <exon e_start="25491" e_stop="24990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGCCTGGTAACTACATTAAATCCTGTAACTAATATGCTGGTTTATATGTCTCTTTTAATCTCTGCTGTCAAAACTATGCAGATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</genome_strand>
        <mrna_strand>TTCAACAGCCTG...........................................................................ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATAGCATATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCCTATGTTTTAACTACATATGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315999" ref_strand="+" ref_description="SGN-U315999        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:At2g20060.1); similar to ribosomal protein L4 [Spinacia oleracea] (GB:CAA63651.1); contains InterPro domain Ribosomal protein L4/L1e (InterPro:IPR002136) | chr1:2249133-2250490 FORWARD | Aliases: None(evalue: 6e-78, score=288) genbank/nr: chloroplast(evalue: 8e-99, score=363)">
      <seq>tgtggataacccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaaaaaaaaaaaaaaaaattactcttgattttcgttccgctctcattgcccctttgagttcttgatttttatgataagagtgattagtttactaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63056" stop="47509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62756" g_stop="61879" g_length="878"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="878" r_length="878" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61518" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1166" r_length="288" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61517" i_stop="60984" i_length="534">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60983" g_stop="60951" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1167" r_stop="1199" r_length="33" r_score="0.758"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U315999" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62756" e_stop="61879"/>
          <exon e_start="61805" e_stop="61518"/>
          <exon e_start="60983" e_stop="60951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAA</genome_strand>
        <mrna_strand>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTAAAAAAAAAAAAAAAAATTACTCTTGATTTTCGTTCCGCTCTCATTGCCCCTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326452" ref_strand="+" ref_description="SGN-U326452        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>tttttttcctctaattttttgttatcaattaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctggattcgcattagtattgagggattcattgtttcctcgtaaaggtgactttgtactctgaaagattcaaatctgaaatctctaattaaggatgaaggagtacttatagatagtcattgagataggagtattgattaacacgtttttcatggcaattgtaaatcccatattagtataaattctttttactaaaaaaaaacaaaaaaaaaaaaaaaaaactcgaggggggcccggtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65082" stop="47517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64782" g_stop="64028" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64027" i_stop="63326" i_length="702">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63325" g_stop="63308" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="756" r_stop="773" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63307" i_stop="62905" i_length="403">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62904" g_stop="62900" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="778" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62899" i_stop="61806" i_length="1094">
            <donor d_prob="0.475" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61805" g_stop="61793" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="791" r_length="13" r_score="0.538"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U326452" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64782" e_stop="64028"/>
          <exon e_start="63325" e_stop="63308"/>
          <exon e_start="62904" e_stop="62900"/>
          <exon e_start="61805" e_stop="61793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAAGACCTATGAACTTTCTGTTGCTTTTAATTCAATGTGGAATAAGCATAGCTTACCTAATTTTAGGATGTAAGCTGCAGAACCTAATTTTATGGTACATTTGAAATTATTAGTTCAAAATTTAATTGAGTTTGTTAAGTTTCAACATAAGTGGAACGAGGAGAAATTGATTTCTTTATATACTCTTGAACAATCATATCTCCTCGATTTATCTTTTGAATTGAGTTAAATTTAATATGGTATTGAAGTTACGTCCATCTCACTTTATTATCATTTAATATTAGGTCTCCATTTTATATTGCTTACATTCATGATATCTGACCATGAACGTGCAAAGGGGCGTTGAGTCTTAAATTGATTGATAAGCATAAATAATCTTGAACAATTATTTCCTCTTGAGCTAGCTACGATGTTACAGTTAGATTAGATTCAAGGTTTGTTTTCTTAACCGAATTCAACATACGAGTTGGGCTTAGCGTATCATGGAAAAATTGGAAAGGGAAGGCAATATGTAGCAGGCTGCATCAATAGCGCCTCAAAATAAAAGAAAATGAAGGTTTTGGGCTTATGATGGTGTAGCCCCAACTAACAAAAGACTTGATCAAGAAAATTGTATAACTTTTATATTATATCAAAATTAATAAAAATAAAGAGCACATTTCATAGAAATTTTATTTGTTGCTTACACTTTAAAAGATTTATTTTTTTTCCTACACAAAAAAAGATTTAGCTATGTCCTTAAAGTATTTTAAATTAAATAAATATGCCCTTCAACTCTTCATCAATAGTTTGGCTTATATATGACCTTATCATTTTGAATGCGTTATTAGTCTAATGAAACATTTGATTAACCTCATTTGTTGATTCATAAGTGAAAAAATTATCAAATATACTCTGACAACGATAAGCATAGAAAGAATAGAATATTTGTAGACCTTATCACTATCTCGTAAAGTTAGAGAGTCTGTTACGTCGTAAAGTTGAAGAGTTCATTGGCGCAAAAGGATCGGTCCTTCACTTGCTGATCGTTCGCGAGTCGAACTCGCTCTCTTGCCACGCCTTTCACTCACTCGCTTAAGTCGGACTCAATCACTCTTTGAGTTTGGAGGATTCACTCTCTTGTTATTACCCGCAGGGAGCGCATGTTTCCGCAAATATGTCCCTAAATTTATCAAATATGTGCTCAATTTCAAATACTTTGAGGGTATATATGACTTTTCCATTTTCACTAAATTTATTTGAACAAAGAATATGAATACATTTTGATATCCTTCTTCCTCATTTGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGA</genome_strand>
        <mrna_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAAAAAAAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACT...................................................................................................................................................................................................................................................................................................................................................................................................................CGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCCCGGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327518" ref_strand="+" ref_description="SGN-U327518        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5839679-5841559 REVERSE | Aliases: F20D23.22, F20D23_22(evalue: 2e-13, score=72.8) genbank/nr: gi|56202166|dbj|BAD73644.1| 60S ribosomal protein L18A-like [Oryza sativa (japonica cultivar-group)] (evalue: 1e-11, score=73.2)">
      <seq>caaaaatttcaactatttttagttgataactccaaatttcaattatgagtgaaggaggcaaggacagtcattatcaccaccatggccaccactatgaccaccaccaccaccactatggacaccaccatcaccaccaagagaagacccaaccacccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaatcaggattcgttgcatgcaccattgctgctgttctcgctgtaattggtaatatcgtatttgggttgacatggatattattaacagcataatggtgatcaacttctgtggagtattcgtgttctagctagtttgcttgattaatgcacattttattcagaacatttctgtaaaacaaaagttacatgttataattaaataaataattatatgtgcttcctgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="80457" stop="76215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80157" g_stop="79846" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79076" g_stop="79011" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="378" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77650" g_stop="77578" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="451" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77108" g_stop="76991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="569" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76990" i_stop="76724" i_length="267">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76723" g_stop="76513" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="780" r_length="211" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U327518" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80157" e_stop="79846"/>
          <exon e_start="79076" e_stop="79011"/>
          <exon e_start="77650" e_stop="77578"/>
          <exon e_start="77108" e_stop="76991"/>
          <exon e_start="76723" e_stop="76513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCTGTAAGTGATCTCTTTCGTTCTTTTTGTGTGATGTTCTCAACTGCATGAGAACGAAAAACTAAGTGTGTTTTCACATTTGATTCGAGATTGACATAAGAATTTTGTTAATGAAATGGCACTCAACTAGTATAGCGCGATAGACATATCATTAATGACCTGTCACGTCTAATATGATGAACTATTTCTAGATGTAACGCGATATACAACTCTTATTGTGTATGTTCTTCGTAGCTTAATGGCTCCGTCAAACTCTGTTGCATGTTGCAGGCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</genome_strand>
        <mrna_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT...........................................................................................................................................................................................................................................................................GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321370" ref_strand="+" ref_description="SGN-U321370        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative, similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana) | chr1:19994943-19996898 REVERSE | Aliases: T3F20.11, T3F20_11, F22G10.9(evalue: 3e-118, score=421) genbank/nr: gi|1644427|gb|AAB17995.1| glyoxalase II [Arabidopsis thaliana](evalue: 9e-117, score=423)">
      <seq>aaaaccatcgccagttggaaagttactttccattgacgtcactcttcttgtagaatacgggaactttttatagagataatcgacagtaaagataagatcatgctgagattccgatggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttctttcatggtcactacgaatgtaaatgggaagcaaggtatacacgatttgaagcgaaagttaacaaaataatgtttagctggagaagttgaataagatattgttccaagaagctatgtagttttaactgataagaatcttgaatatatgtatgtaacttgatttctgagatgggaataatgaaaagtgaaatttatcagttgctgcattttctgaattatagtagcaattcagatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="86705" stop="47522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86405" g_stop="86097" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84555" g_stop="84427" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="438" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84300" g_stop="84193" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="546" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83064" g_stop="82930" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="681" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82261" g_stop="82220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="723" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82107" g_stop="82048" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="783" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81965" g_stop="81912" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="837" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81604" g_stop="81580" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="862" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="81499" g_stop="81163" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="863" r_stop="1199" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="81162" i_stop="81108" i_length="55">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="81107" g_stop="81092" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1215" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U321370" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86405" e_stop="86097"/>
          <exon e_start="84555" e_stop="84427"/>
          <exon e_start="84300" e_stop="84193"/>
          <exon e_start="83064" e_stop="82930"/>
          <exon e_start="82261" e_stop="82220"/>
          <exon e_start="82107" e_stop="82048"/>
          <exon e_start="81965" e_stop="81912"/>
          <exon e_start="81604" e_stop="81580"/>
          <exon e_start="81499" e_stop="81163"/>
          <exon e_start="81107" e_stop="81092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAAAATACGGGAACATTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCCAAGTTTATGCCTGAGTGTTATACTGTGTAGAACAGTGCAACGAGATTTTGTTCATATAAAAAAGAAGAAAAAT</genome_strand>
        <mrna_strand>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAGAATACGGGAACTTTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCAAA.......................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U337360" ref_strand="+" ref_description="SGN-U337360        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | hydroxyacylglutathione hydrolase, putative / glyoxalase II, putative, similar to glyoxalase II GI:1644427 from (Arabidopsis thaliana) | chr1:19994943-19996898 REVERSE | Aliases: T3F20.11, T3F20_11, F22G10.9(evalue: 6e-75, score=277) genbank/nr: gi|1644427|gb|AAB17995.1| glyoxalase II [Arabidopsis thaliana](evalue: 2e-73, score=278)">
      <seq>gaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="86585" stop="81763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86285" g_stop="86097" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84555" g_stop="84427" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="318" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84426" i_stop="83065" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83064" g_stop="82930" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82261" g_stop="82220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="495" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82107" g_stop="82063" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="540" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U337360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86285" e_stop="86097"/>
          <exon e_start="84555" e_stop="84427"/>
          <exon e_start="83064" e_stop="82930"/>
          <exon e_start="82261" e_stop="82220"/>
          <exon e_start="82107" e_stop="82063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</genome_strand>
        <mrna_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U321008" ref_strand="+" ref_description="SGN-U321008        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:At1g53590.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81628.1); contains InterPro domain C2 domain (InterPro:IPR000008) | chr3:4904369-4908000 REVERSE | Aliases: MIE1.9(evalue: 4e-81, score=298) genbank/nr: gi|9294381|dbj|BAB02391.1| gene_id:MIE1.9~unknown protein [Arabidopsis thaliana](evalue: 3e-79, score=298)">
      <seq>cgcaaccagaaaactggtttggagctggggctaaggagcccattgcttttgtgattttagaagttcttgaagcagctgacatgaagccatcagatttaaatggattggctgatccatatgttaaggggcacattggcctttacagattcaggactaagactaagaagaagacattgaatccacagtggcgtgaggagttcaagattccagtctgtacatgggagtctcctaacaacatgctcaatgtcgaagttcgtgacaaagaccatttatatgatgatacattgggaaaatgttccatcaatatctgtgattttagggatggccagaggcatgatatgtggctgtctcttcagaacatcaaaattgggagattgcatcttgccataactgttgttgattgtgccaaaaagggcgcggagcagtcatatgatagcggaagtatggtcaatgaacaggatagcaaatctgctgaggtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="92832" stop="94936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93135" g_stop="93227" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="102" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93228" i_stop="93305" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93306" g_stop="93492" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="289" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93493" i_stop="93662" i_length="170">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93663" g_stop="93786" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="413" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93787" i_stop="94016" i_length="230">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94017" g_stop="94636" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="1033" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U321008" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1024</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93135" e_stop="93227"/>
          <exon e_start="93306" e_stop="93492"/>
          <exon e_start="93663" e_stop="93786"/>
          <exon e_start="94017" e_stop="94636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATGGTACCTAGAAAATAATCTTACTGTACTTCTGTCAAATTATTAGCTATGTATGGCTAAAAGCTGGGTGGTCATTTTCAGGATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGGGTTCGTCCTGTTCTCTTGGCAATTTAAATACTAATATTCTTCTCTATAGGTGTATGAGTTAACTATAGTTTCTTCTTCTTTTCTTTCGACATCAGTATGTTCTCCAATGGAATATTATTCGAAGCCGACATAAGCAACTTATTCACTTCTTATTTGTTCTTTGTGAACAGAAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAGGTATATGTTTTTCCTGTGAAATTTGTCATGAACACTAAATTGAAATGTTAAGAAGCAAAGATTTCTCACTTATTATCTTCTTTTGCACCTGAAAAATGGTTTCCATTACTCATAATTTTATAATGGATGAATTCAGTAAACAAAAATAACGGTGCTGAGGAATGAGTATAGTTTATTATGATAAATAATGACGGAAAATAAGGAAGTACTAAGTTTTCAGCAATTTTCAGGGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</genome_strand>
        <mrna_strand>AAAACTGGTTTGGAGCTGGGGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG..............................................................................GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG..........................................................................................................................................................................AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG......................................................................................................................................................................................................................................GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318898" ref_strand="+" ref_description="SGN-U318898        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | SOUL heme-binding family protein, similar to SOUL protein (Mus musculus) GI:4886906; contains Pfam profile PF04832: SOUL heme-binding protein | chr1:5844729-5846215 FORWARD | Aliases: F20D23.21, F20D23_21(evalue: 1e-67, score=252) genbank/nr: gi|34903864|ref|NP_913279.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|8096573|dbj|BAA96146.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|8096616|dbj|BAA96188.1| unnamed protein product [Oryza sativa (japonica cultivar-group)](evalue: 3e-66, score=254)">
      <seq>aagaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgagttcagggctagagtcaatgagatgtggtttacttttgttatggacactgcaattgacatttaagaggcaacaaagtttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="98280" stop="96875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97980" g_stop="97727" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97726" i_stop="97631" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97630" g_stop="97175" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="710" r_length="456" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-U318898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97980" e_stop="97727"/>
          <exon e_start="97630" e_stop="97175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</genome_strand>
        <mrna_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTAAGAGGCAACAAAGTTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332881" ref_strand="+" ref_description="SGN-U332881        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gagagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaggctgtttcattgcatacaaggatgatttgttgtttgaaagagttagtacttatcaagctaaggtcgagctgttataaaccttacctgttactgcatcacctcgccagtcctagatgtgctgcttagtgtagagttctgttttgtttgctttgaagatatatggtaagcctagcttcatgcccttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="117541" stop="118922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117841" g_stop="118622" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U332881" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117841" e_stop="118622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</genome_strand>
        <mrna_strand>GAGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAAGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-iQZ5l5/lycopersicum_combined_unigene_seqs" ref_id="SGN-U345178" ref_strand="-" ref_description="SGN-U345178        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G41650.1 | Symbol: None | lactoylglutathione lyase family protein / glyoxalase I family protein, contains Pfam profile PF00903: glyoxalase family protein | chr5:16672141-16673027 FORWARD | Aliases: MBK23.15, MBK23_15 (evalue: 9e-16, score=73.2) genbank/nr: conserved(evalue: 1e-16, score=75.5)">
      <seq>ttttttttatgttattattgaacgtcatacaactggttagctgctaactttagtttcaaagtgacattgttgtgcagaagggatacttatccctcctatcctttacagttgttgatataaacaattcggtgaccaaactattggctttaggtgccgagttggatggccccatcaaatatgaaatccatggaaaggttttgctgctttgaggtgtgtggatggacatatgttaggtctttatcagccgtcctaaggcatcctcgaaacaaccacttgcaggtaaaagtaatcacgacttctgtaacaaggcaaattggtttctcagcatagattttgcattcgggtgtactgttgaaagagagaatcgactcttgtacatggaggtgaagcacatatagggagtgttacagcaagaaacaatcaatacagtagctgaattcctactgtatttgtttttgatgttctgttctggttatccttttgtgtaacatgatgttttgtattcaccaacatgaattgtggtgctccacccttaaccagaggactcggattcgagcttccggtatggagaaaattttgttgagaaagccactcttgaataggtcatgcactgtacgatttggattcaatcggagctccaacgtgggctcctgacactggatgggaaaaccaaaaaaaaaaacatgatgttgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059A10-LGqF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="118514" stop="119964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118814" g_stop="119007" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119008" i_stop="119156" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119157" g_stop="119653" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="691" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="727"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-U345178" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345178" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118814" e_stop="119007"/>
          <exon e_start="119157" e_stop="119653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAGGTAACCAAAATTTCTTAAGGTTGCTTTCAAACTTGTTGACCAGCATTGGTTTATGCTCGTTATTTACACATCGATTCAGAATTTTGTTCTGCATTCAGCATTTATGTTGATGAAACTGACCTATCGCATACTTTATATGGTCCTTGTAGGTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</genome_strand>
        <mrna_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG.....................................................................................................................................................GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8271" PGL_stop="9100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8271" e_stop="9100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="8271" e_stop="9100" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8271" stop="9100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</gDNA_template>
            <first_frame> E  D  *  P  K  T  S  S  W  N  C  Q  A  L  P  T  K  I  D  K  D  F  *  A  R  A  D  K  S  G  A  S  L  C  W  C  G  S  L  Y  E  S  *  A  R  N  E  Q  *  H  N  *  L  H  L  R  W  T  R  Q  E  R  *  *  K  *  T  A  G  C  G  N  L  Y  *  V  N  D  C  R  V  L  *  C  Y  I  K  *  L  V  P  L  Y  K  L  R  *  S  I  I  Y  Y  *  E  Y  Q  I  L  F  *  Y  C  *  L  W  R  C  K  R  C  *  S  V  L  F  H  H  Q  Q  L  M  W  I  R  L  F  I  *  Q  N  S  G  V  *  Y  V  F  K  *  *  T  A  Y  K  I  L  F  R  K  *  G  F  C  F  G  F  N  C  W  D  *  H  T  E  T  G  Y  C  S  L  F  *  R  F  S  *  *  *  *  *  P  C  T  C  R  I  W  *  *  A  *  I  *  T  N  L  L  S  I  *  C  V  V  S  *  N  S  K  S  L  Y  V  E  L  A  R  Y  K  L  C  F  C  F  A  N  Q  Y  F  I  E  W  K  H  I  N  H  F  L  V  Q  W  N  N  W  S  F  F  V  I  L  Q  L  *  I  C  L  L  *  L  I  I  L  I  L  Y  N   </first_frame>
            <second_frame>  K  I  S  R  R  Q  V  P  G  I  V  K  H  C  P  P  K  S  T  K  T  S  R  P  E  Q  T  K  A  E  H  L  Y  V  G  V  D  P  Y  M  N  H  R  P  E  M  N  S  D  I  I  D  C  T  S  G  G  L  V  K  N  A  N  R  N  R  P  P  V  V  G  T  Y  T  E  S  M  T  A  E  F  S  D  A  T  S  S  D  W  S  L  F  T  S  S  D  E  A  S  F  T  T  E  S  T  R  Y  S  F  S  T  V  D  Y  G  D  A  N  A  A  D  P  F  S  S  I  I  N  S  L  C  G  S  D  Y  S  S  N  R  T  V  A  C  S  M  F  S  S  S  K  P  H  T  R  F  F  S  E  S  K  G  S  V  L  D  S  T  A  G  T  S  I  P  R  Q  V  T  V  P  Y  S  E  G  F  H  S  D  S  S  N  H  V  H  V  E  Y  G  S  E  P  R  Y  E  Q  T  Y  Y  P  Y  N  V  *  F  L  E  I  P  N  H  Y  M  S  N  *  L  G  T  S  C  A  S  V  L  L  I  N  I  L  L  N  G  S  T  S  I  I  F  *  F  N  G  T  T  G  H  F  L  L  F  C  S  C  K  Y  A  C  C  S  *  L  S  *  F  F  T  I  </second_frame>
            <third_frame>   R  L  A  E  D  K  F  L  E  L  S  S  T  A  H  Q  N  R  Q  R  L  L  G  Q  S  R  Q  K  R  S  I  F  M  L  V  W  I  L  I  *  I  I  G  Q  K  *  T  V  T  *  L  I  A  P  P  V  D  S  S  R  T  L  I  E  I  D  R  R  L  W  E  P  I  L  S  Q  *  L  Q  S  S  L  M  L  H  Q  V  I  G  P  S  L  Q  A  Q  M  K  H  H  L  L  L  R  V  P  D  T  L  L  V  L  L  T  M  E  M  Q  T  L  L  I  R  S  L  P  S  S  T  A  Y  V  D  Q  I  I  H  L  T  E  Q  W  R  V  V  C  F  Q  V  V  N  R  I  Q  D  S  F  Q  K  V  R  V  L  F  W  I  Q  L  L  G  L  A  Y  R  D  R  L  L  F  L  I  L  K  V  F  I  V  I  V  V  T  M  Y  M  *  N  M  V  V  S  L  D  M  N  K  L  T  I  H  I  M  C  S  F  L  K  F  Q  I  I  I  C  R  I  S  *  V  Q  A  V  L  L  F  C  *  S  I  F  Y  *  M  E  A  H  Q  S  F  S  S  S  M  E  Q  L  V  I  F  C  Y  F  A  V  V  N  M  L  A  V  A  N  Y  L  D  S  L  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8272" stop="8907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISRRQVPGIVKHCPPKSTKTSRPEQTKAEHLYVGVDPYMNHRPEMNSDIIDCTSGGLVKNANRNRPPVVGTYTESMTAEFSDATSSDWSLFTSSDEASFTTESTRYSFSTVDYGDANAADPFSSIINSLCGSDYSSNRTVACSMFSSSKPHTRFFSESKGSVLDSTAGTSIPRQVTVPYSEGFHSDSSNHVHVEYGSEPRYEQTYYPYNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10296" PGL_stop="9329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10296" e_stop="9996"/>
            <exon e_start="9907" e_stop="9329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10296" e_stop="9996" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="9907" e_stop="9329" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10296" stop="9996"/>
              <exon start="9907" stop="9329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTTCATTGAGACAAATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATTGCAAATAAGATAGATTGTGTAATACAATCTGATTCTGAGAGTTTGGTGGTTAAAACACCTCT</gDNA_template>
            <first_frame> Q  N  F  I  E  T  N  *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I  L  Q  I  R  *  I  V  *  Y  N  L  I  L  R  V  W  W  L  K  H  L  </first_frame>
            <second_frame>  K  I  S  L  R  Q  I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  F  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  C  K  *  D  R  L  C  N  T  I  *  F  *  E  F  G  G  *  N  T  S </second_frame>
            <third_frame>   K  F  H  *  D  K  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  S  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I  A  N  K  I  D  C  V  I  Q  S  D  S  E  S  L  V  V  K  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10282" stop="9996"/>
                    <exon start="9907" stop="9475"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKLKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19890" PGL_stop="19011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19890" e_stop="19011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="19890" e_stop="19011" e_length="880"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19890" stop="19011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTCCAATCTCTTGCCATTGTTCATCACACATCTTGCCCATATACTCTTGAACAAAATGGTGTTGCCGAACGTAAACACCGTCACCTCATTGAAACCGTCGTCACTCTTCTTCATGAGTCTCATCTCCCTGCACCTTTCTGGGTCGAGGCGTTGGCCACTGCCAACTATCTCATCAACCGCATGCTCACACCCTCCCTCTCTAACACATCTCCCTATGAATTTCTATACACACACCGTCCAGATTACACTCATCTTCGACCATTTGGTTGTCTTGCCTATCCTTGGCTACGCCCTCACACTCAACACAAACTTCAACCCCGGTCTACACCATGCATCTTTCTAGGCTACCATCCCACCATAAAAGGATACAAATGTTTTGAACTCATCTCTCAAAAAACATATGTCTCTCGTCATGTTCTTTTTATCGAGGAGGATTTTCCCTATCCCCGGTTAAGCTCTGTCAATGCCACGTCCAACCCACTTGGTCTTATTCCAATCTTTCCACCGAGCTCACATGGCCTTATACCGGCATCCATTACCCCATCCATCATACACACACCACCCAATCCCAACCCTCTCATCCCATCCGGATCACCCACCACCCCCAATCCACCCATCCCACCAACTTTCAATCCTCCTTACCAACAATCTCCACCAGCCGAAACAACCCCTCCTCCACCCCCACCCCCTTTACATCATATGCAAACCCGTTCCAAATCCGACATTTTCAAGCCCAAAGTCTACACCACCACTTCACTTGCTCCCTCTCCCTCTGAACCTACTACCTATAAACAAGCATCTACCAACCCCCTTTGGTGTCAGGCTATGGATGATGAATACAGGTCTCTTATTAATCAGCATACTTGGGAATTGGT</gDNA_template>
            <first_frame> L  F  S  N  L  L  P  L  F  I  T  H  L  A  H  I  L  L  N  K  M  V  L  P  N  V  N  T  V  T  S  L  K  P  S  S  L  F  F  M  S  L  I  S  L  H  L  S  G  S  R  R  W  P  L  P  T  I  S  S  T  A  C  S  H  P  P  S  L  T  H  L  P  M  N  F  Y  T  H  T  V  Q  I  T  L  I  F  D  H  L  V  V  L  P  I  L  G  Y  A  L  T  L  N  T  N  F  N  P  G  L  H  H  A  S  F  *  A  T  I  P  P  *  K  D  T  N  V  L  N  S  S  L  K  K  H  M  S  L  V  M  F  F  L  S  R  R  I  F  P  I  P  G  *  A  L  S  M  P  R  P  T  H  L  V  L  F  Q  S  F  H  R  A  H  M  A  L  Y  R  H  P  L  P  H  P  S  Y  T  H  H  P  I  P  T  L  S  S  H  P  D  H  P  P  P  P  I  H  P  S  H  Q  L  S  I  L  L  T  N  N  L  H  Q  P  K  Q  P  L  L  H  P  H  P  L  Y  I  I  C  K  P  V  P  N  P  T  F  S  S  P  K  S  T  P  P  L  H  L  L  P  L  P  L  N  L  L  P  I  N  K  H  L  P  T  P  F  G  V  R  L  W  M  M  N  T  G  L  L  L  I  S  I  L  G  N  W  </first_frame>
            <second_frame>  F  S  P  I  S  C  H  C  S  S  H  I  L  P  I  Y  S  *  T  K  W  C  C  R  T  *  T  P  S  P  H  *  N  R  R  H  S  S  S  *  V  S  S  P  C  T  F  L  G  R  G  V  G  H  C  Q  L  S  H  Q  P  H  A  H  T  L  P  L  *  H  I  S  L  *  I  S  I  H  T  P  S  R  L  H  S  S  S  T  I  W  L  S  C  L  S  L  A  T  P  S  H  S  T  Q  T  S  T  P  V  Y  T  M  H  L  S  R  L  P  S  H  H  K  R  I  Q  M  F  *  T  H  L  S  K  N  I  C  L  S  S  C  S  F  Y  R  G  G  F  S  L  S  P  V  K  L  C  Q  C  H  V  Q  P  T  W  S  Y  S  N  L  S  T  E  L  T  W  P  Y  T  G  I  H  Y  P  I  H  H  T  H  T  T  Q  S  Q  P  S  H  P  I  R  I  T  H  H  P  Q  S  T  H  P  T  N  F  Q  S  S  L  P  T  I  S  T  S  R  N  N  P  S  S  T  P  T  P  F  T  S  Y  A  N  P  F  Q  I  R  H  F  Q  A  Q  S  L  H  H  H  F  T  C  S  L  S  L  *  T  Y  Y  L  *  T  S  I  Y  Q  P  P  L  V  S  G  Y  G  *  *  I  Q  V  S  Y  *  S  A  Y  L  G  I  G </second_frame>
            <third_frame>   F  L  Q  S  L  A  I  V  H  H  T  S  C  P  Y  T  L  E  Q  N  G  V  A  E  R  K  H  R  H  L  I  E  T  V  V  T  L  L  H  E  S  H  L  P  A  P  F  W  V  E  A  L  A  T  A  N  Y  L  I  N  R  M  L  T  P  S  L  S  N  T  S  P  Y  E  F  L  Y  T  H  R  P  D  Y  T  H  L  R  P  F  G  C  L  A  Y  P  W  L  R  P  H  T  Q  H  K  L  Q  P  R  S  T  P  C  I  F  L  G  Y  H  P  T  I  K  G  Y  K  C  F  E  L  I  S  Q  K  T  Y  V  S  R  H  V  L  F  I  E  E  D  F  P  Y  P  R  L  S  S  V  N  A  T  S  N  P  L  G  L  I  P  I  F  P  P  S  S  H  G  L  I  P  A  S  I  T  P  S  I  I  H  T  P  P  N  P  N  P  L  I  P  S  G  S  P  T  T  P  N  P  P  I  P  P  T  F  N  P  P  Y  Q  Q  S  P  P  A  E  T  T  P  P  P  P  P  P  P  L  H  H  M  Q  T  R  S  K  S  D  I  F  K  P  K  V  Y  T  T  T  S  L  A  P  S  P  S  E  P  T  T  Y  K  Q  A  S  T  N  P  L  W  C  Q  A  M  D  D  E  Y  R  S  L  I  N  Q  H  T  W  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19888" stop="19013"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQSLAIVHHTSCPYTLEQNGVAERKHRHLIETVVTLLHESHLPAPFWVEALATANYLINRMLTPSLSNTSPYEFLYTHRPDYTHLRPFGCLAYPWLRPHTQHKLQPRSTPCIFLGYHPTIKGYKCFELISQKTYVSRHVLFIEEDFPYPRLSSVNATSNPLGLIPIFPPSSHGLIPASITPSIIHTPPNPNPLIPSGSPTTPNPPIPPTFNPPYQQSPPAETTPPPPPPPLHHMQTRSKSDIFKPKVYTTTSLAPSPSEPTTYKQASTNPLWCQAMDDEYRSLINQHTWEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20643" PGL_stop="21486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20643" e_stop="21486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="20643" e_stop="21486" e_length="844"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAA</gDNA_template>
            <first_frame> L  Y  N  N  V  V  C  I  S  I  S  C  F  F  H  Y  P  T  S  I  F  I  K  I  F  H  P  S  S  Q  I  Y  L  Y  F  P  Q  S  P  *  K  S  I  T  P  S  P  Y  T  H  P  T  S  *  P  F  H  C  F  K  C  H  P  I  N  H  D  A  *  R  R  F  *  T  R  N  L  C  F  P  F  R  P  *  R  T  Q  K  G  L  *  C  S  C  G  G  T  *  K  G  R  G  *  G  C  V  C  I  P  R  R  C  F  H  G  D  S  S  G  F  D  T  F  K  Y  Y  S  *  C  A  A  T  S  *  T  G  W  C  V  C  C  R  G  L  R  T  G  Y  W  V  P  W  C  L  Y  C  Y  I  W  S  G  S  Y  E  S  C  *  R  S  C  *  C  F  V  G  *  Y  P  D  C  C  Y  Y  R  S  S  A  E  E  D  D  W  Y  *  C  V  S  G  N  S  Y  C  *  G  N  E  I  H  Y  E  A  *  L  S  C  Y  G  C  R  G  Y  S  *  G  C  S  *  S  V  F  S  S  E  I  R  T  A  W  T  C  F  D  *  C  S  *  G  Y  S  A  T  I  G  D  T  *  L  G  S  A  N  E  V  A  W  L  H  V  *  V  A  *  I  T  *  *  D  A  F  G  T  </first_frame>
            <second_frame>  S  T  T  M  S  S  A  S  P  S  P  V  F  S  I  T  L  P  P  S  S  S  K  S  S  T  L  L  P  K  S  T  F  T  F  H  N  H  P  K  K  A  S  P  L  H  L  T  H  T  Q  H  H  S  R  F  T  V  S  N  V  I  L  S  T  T  T  H  D  D  V  S  E  P  E  I  F  V  S  R  F  A  P  D  E  P  R  K  G  C  D  V  L  V  E  A  L  E  R  E  G  V  K  D  V  F  A  Y  P  G  G  A  S  M  E  I  H  Q  A  L  T  R  S  N  I  I  R  N  V  L  P  R  H  E  Q  G  G  V  F  A  A  E  G  Y  A  R  A  T  G  F  P  G  V  C  I  A  T  S  G  P  G  A  T  N  L  V  S  G  L  A  D  A  L  L  D  S  I  P  I  V  A  I  T  G  Q  V  P  R  R  M  I  G  T  D  A  F  Q  E  T  P  I  V  E  V  T  R  S  I  T  K  H  N  Y  L  V  M  D  V  E  D  I  P  R  V  V  R  E  A  F  F  L  A  K  S  G  R  P  G  P  V  L  I  D  V  P  K  D  I  Q  Q  Q  L  V  I  P  N  W  D  Q  P  M  R  L  P  G  Y  M  S  R  L  P  K  L  P  N  E  M  L  L  E  Q </second_frame>
            <third_frame>   L  Q  Q  C  R  L  H  L  H  L  L  F  F  P  L  P  Y  L  H  L  H  Q  N  L  P  P  F  F  P  N  L  P  L  L  S  T  I  T  L  K  K  H  H  P  F  T  L  H  T  P  N  I  I  A  V  S  L  F  Q  M  S  S  Y  Q  P  R  R  M  T  T  F  L  N  P  K  S  L  F  P  V  S  P  L  T  N  P  E  R  V  V  M  F  L  W  R  H  L  K  G  K  G  L  R  M  C  L  H  T  Q  E  V  L  P  W  R  F  I  R  L  *  H  V  Q  I  L  F  V  M  C  C  H  V  M  N  R  V  V  C  L  L  Q  R  V  T  H  G  L  L  G  S  L  V  F  V  L  L  H  L  V  R  E  L  R  I  L  L  A  V  L  L  M  L  C  W  I  V  S  R  L  L  L  L  P  V  K  C  R  G  G  *  L  V  L  M  R  F  R  K  L  L  L  L  R  *  R  D  P  L  R  S  I  I  I  L  L  W  M  *  R  I  F  L  G  L  F  V  K  R  F  F  *  R  N  Q  D  G  L  D  L  F  *  L  M  F  L  R  I  F  S  N  N  W  *  Y  L  I  G  I  S  Q  *  G  C  L  V  T  C  L  G  C  L  N  Y  L  M  R  C  F  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20644" stop="21486"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTMSSASPSPVFSITLPPSSSKSSTLLPKSTFTFHNHPKKASPLHLTHTQHHSRFTVSNVILSTTTHDDVSEPEIFVSRFAPDEPRKGCDVLVEALEREGVKDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPGPVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRLPKLPNEMLLEQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24836" PGL_stop="20655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24836" e_stop="24788"/>
            <exon e_start="24698" e_stop="24643"/>
            <exon e_start="23367" e_stop="23339"/>
            <exon e_start="22954" e_stop="22936"/>
            <exon e_start="22722" e_stop="20655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.732" acc_prob="0.000" e_score="0.388"/>
          <exon-intron don_prob="0.996" acc_prob="0.744" e_score="0.536"/>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.621"/>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="0.526"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.388">
            <gDNA_exon_boundary e_start="24836" e_stop="24788" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.732" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24787" i_stop="24699" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.536">
            <gDNA_exon_boundary e_start="24698" e_stop="24643" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.744">
            <gDNA_intron_boundary i_start="24642" i_stop="23368" i_length="1275"/>
          </intron>
          <exon e_serial="3" e_score="0.621">
            <gDNA_exon_boundary e_start="23367" e_stop="23339" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23338" i_stop="22955" i_length="384"/>
          </intron>
          <exon e_serial="4" e_score="0.526">
            <gDNA_exon_boundary e_start="22954" e_stop="22936" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22935" i_stop="22723" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="22722" e_stop="20655" e_length="2068"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24836" stop="24788"/>
              <exon start="24698" stop="24643"/>
              <exon start="23367" stop="23339"/>
              <exon start="22954" stop="22936"/>
              <exon start="22722" stop="20655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313745" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGAATGATGAACAAGCTCATCTTCGTCATGCTGGGCTATTTTCGCG : TTGTTGTCTATGTGCTCTCATGGGTTGTCATTGCTTTTATTTTCCTCTTGATGAAG : GTGTTGTTGCTAATGATGAAGGCAAAATG : TTGTGCTAATCTGATTTTG : AATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTCCAAGCAGAAAAGTCCAACTTCAGCTTACCTTTTTTACTCTCGAATATGGAATTCAAACCCTGTAATGCCAACTTGATATCTGCACAGATGGAAACATGAGGTTGCTTGTTCTTTCCAATCTCAGCCGAATCAATATCAATATGGACAATCTTAGCTCGGCTAGCAAAAGCTTCCAATTTACCAGTAACTCGATCATCAAACCTCACCCCAAATGCAAGCAACAAATCACTACTATCCACCGCATAATTAGCATACACAGTCCCATGCATACCCAACATTTGAAGAGAAAGCTCATCCCCACTTGGAAAAGCTCCAAGACCCATCAAAGTACTCGCCACAGGAATACCCGTAAGCTCCACAAAGCGTCTCAGCTCCTCACTCGACTGTGAACACCCACCACCCACATACAAAACAGGCTTCTTTGACTCTGAAATCAGCCTAACAATTTGTTCCAAAAGCATCTCATTAGGTAATTTAGGCAACCTAGACATGTAACCAGGCAACCTCATTGGCTGATCCCAATTAGGTATCACCAATTGTTGCTGAATATCCTTAGGAACATCAATCAAAACAGGTCCAGGCCGTCCTGATTTCGCTAGAAAAAACGCTTCACGAACAACCCTAGGAATATCCTCTACATCCATAACAAGATAATTATGCTTCGTAATGGATCTCGTTACCTCAACAATAGGAGTTTCCTGAAACGCATCAGTACCAATCATCCTCCTCGGCACTTGACCGGTAATAGCAACAATCGGGATACTATCCAACAAAGCATCAGCAAGACCGCTAACAAGATTCGTAGCTCCCGGACCAGATGTAGCAATACAAACACCAGGGAACCCAGTAGCCCGTGCGTAACCCTCTGCAGCAAACACACCACCCTGTTCATGACGTGGCAGCACATTACGAATAATATTTGAACGTGTCAAAGCCTGATGAATCTCCATGGAAGCACCTCCTGGGTATGCAAACACATCCTTAACCCCTTCCCTTTCAAGTGCCTCCACAAGAACATCACAACCCTTTCTGGGTTCGTCAGGGGCGAAACGGGAAACAAAGATTTCGGGTTCAGAAACGTCGTCATGCGTCGTGGTTGATAGGATGACATTTGAAACAGTGAAACGGCTATGATGTTGGGTGTGTGTAAGGTGAAGGGGTGATGCTTTTTTAGGGTGATTGTGGAAAGTANAGGTAGATTTGGGAAGAAGGGTGGAAGATTTTGATGAAGATGGAGGTAGGGTNNTGGAAAAAACAGGAGATGGAGATGCAGNCGNC</gDNA_template>
            <first_frame> G  G  M  M  N  K  L  I  F  V  M  L  G  Y  F  R   : V  V  V  Y  V  L  S  W  V  V  I  A  F  I  F  L  L  M  K  :  V  L  L  L  M  M  K  A  K  C :   C  A  N  L  I  L  :  N  P  S  H  N  E  K  L  L  S  K  H  K  Y  *  V  Y  F  R  *  Y  N  A  L  N  *  L  C  S  F  S  K  S  I  G  T  S  P  I  T  L  R  N  H  I  F  E  S  T  A  T  G  N  H  R  *  N  M  L  L  M  R  Y  N  H  I  Q  Q  V  W  P  R  S  V  *  H  L  L  N  G  S  S  K  I  I  P  V  *  H  S  C  S  R  Y  A  T  S  L  C  K  F  Q  H  I  R  E  D  L  F  L  I  S  R  I  T  Q  V  S  V  C  S  V  S  L  I  E  S  I  L  P  L  N  H  H  S  Q  V  L  I  I  Q  Q  H  N  L  N  W  E  I  L  H  L  N  C  C  Q  L  L  H  I  H  D  K  T  P  I  T  I  N  I  N  H  N  L  T  R  S  S  N  S  R  T  Y  S  S  R  Q  T  K  S  H  C  S  *  S  T  R  C  K  P  L  A  W  L  F  V  L  V  V  L  G  S  P  H  L  V  L  P  H  T  S  T  N  D  G  I  S  V  S  *  L  I  K  N  L  N  S  I  L  G  R  D  G  F  T  E  S  L  K  I  Q  W  V  L  H  L  L  L  R  *  L  L  P  P  S  R  K  V  Q  L  Q  L  T  F  F  T  L  E  Y  G  I  Q  T  L  *  C  Q  L  D  I  C  T  D  G  N  M  R  L  L  V  L  S  N  L  S  R  I  N  I  N  M  D  N  L  S  S  A  S  K  S  F  Q  F  T  S  N  S  I  I  K  P  H  P  K  C  K  Q  Q  I  T  T  I  H  R  I  I  S  I  H  S  P  M  H  T  Q  H  L  K  R  K  L  I  P  T  W  K  S  S  K  T  H  Q  S  T  R  H  R  N  T  R  K  L  H  K  A  S  Q  L  L  T  R  L  *  T  P  T  T  H  I  Q  N  R  L  L  *  L  *  N  Q  P  N  N  L  F  Q  K  H  L  I  R  *  F  R  Q  P  R  H  V  T  R  Q  P  H  W  L  I  P  I  R  Y  H  Q  L  L  L  N  I  L  R  N  I  N  Q  N  R  S  R  P  S  *  F  R  *  K  K  R  F  T  N  N  P  R  N  I  L  Y  I  H  N  K  I  I  M  L  R  N  G  S  R  Y  L  N  N  R  S  F  L  K  R  I  S  T  N  H  P  P  R  H  L  T  G  N  S  N  N  R  D  T  I  Q  Q  S  I  S  K  T  A  N  K  I  R  S  S  R  T  R  C  S  N  T  N  T  R  E  P  S  S  P  C  V  T  L  C  S  K  H  T  T  L  F  M  T  W  Q  H  I  T  N  N  I  *  T  C  Q  S  L  M  N  L  H  G  S  T  S  W  V  C  K  H  I  L  N  P  F  P  F  K  C  L  H  K  N  I  T  T  L  S  G  F  V  R  G  E  T  G  N  K  D  F  G  F  R  N  V  V  M  R  R  G  *  *  D  D  I  *  N  S  E  T  A  M  M  L  G  V  C  K  V  K  G  *  C  F  F  R  V  I  V  E  S  I  G  R  F  G  K  K  G  G  R  F  *  *  R  W  R  *  G  F  G  K  N  R  R  W  R  C  S  R  </first_frame>
            <second_frame>  V  E  *  *  T  S  S  S  S  S  C  W  A  I  F  A  :  L  L  S  M  C  S  H  G  L  S  L  L  L  F  S  S  *  *  R :   C  C  C  *  *  *  R  Q  N   : V  V  L  I  *  F  * :   I  L  H  T  M  K  N  F  *  V  N  I  N  I  K  F  I  L  D  N  T  M  P  *  T  S  Y  V  A  S  Q  S  Q  *  E  R  L  P  S  P  S  V  I  T  S  L  K  A  P  P  L  G  I  I  G  R  T  C  S  *  *  G  T  I  T  S  N  K  Y  G  P  G  V  S  N  I  F  *  M  A  A  L  R  S  S  L  C  D  T  L  A  A  G  T  P  Q  A  S  A  N  F  S  I  L  G  K  I  S  S  S  L  A  G  L  P  K  *  V  C  A  L  L  A  L  *  N  R  S  S  H  *  T  T  I  P  K  C  *  L  F  S  N  I  I  L  T  G  R  F  S  T  L  I  V  A  N  S  C  T  F  M  I  K  L  P  S  P  S  I  S  T  T  I  S  P  G  L  P  T  A  A  P  I  A  A  G  K  P  N  P  I  A  P  N  P  P  D  V  S  H  W  R  G  F  L  Y  L  *  C  W  A  A  H  I  W  C  C  P  T  P  V  L  M  M  A  F  P  L  V  N  S  S  R  T  *  I  A  Y  W  G  G  M  A  S  P  K  V  L  K  F  N  G  Y  F  T  F  C  S  V  N  S  C  L  Q  A  E  K  S  N  F  S  L  P  F  L  L  S  N  M  E  F  K  P  C  N  A  N  L  I  S  A  Q  M  E  T  *  G  C  L  F  F  P  I  S  A  E  S  I  S  I  W  T  I  L  A  R  L  A  K  A  S  N  L  P  V  T  R  S  S  N  L  T  P  N  A  S  N  K  S  L  L  S  T  A  *  L  A  Y  T  V  P  C  I  P  N  I  *  R  E  S  S  S  P  L  G  K  A  P  R  P  I  K  V  L  A  T  G  I  P  V  S  S  T  K  R  L  S  S  S  L  D  C  E  H  P  P  P  T  Y  K  T  G  F  F  D  S  E  I  S  L  T  I  C  S  K  S  I  S  L  G  N  L  G  N  L  D  M  *  P  G  N  L  I  G  *  S  Q  L  G  I  T  N  C  C  *  I  S  L  G  T  S  I  K  T  G  P  G  R  P  D  F  A  R  K  N  A  S  R  T  T  L  G  I  S  S  T  S  I  T  R  *  L  C  F  V  M  D  L  V  T  S  T  I  G  V  S  *  N  A  S  V  P  I  I  L  L  G  T  *  P  V  I  A  T  I  G  I  L  S  N  K  A  S  A  R  P  L  T  R  F  V  A  P  G  P  D  V  A  I  Q  T  P  G  N  P  V  A  R  A  *  P  S  A  A  N  T  P  P  C  S  *  R  G  S  T  L  R  I  I  F  E  R  V  K  A  *  *  I  S  M  E  A  P  P  G  Y  A  N  T  S  L  T  P  S  L  S  S  A  S  T  R  T  S  Q  P  F  L  G  S  S  G  A  K  R  E  T  K  I  S  G  S  E  T  S  S  C  V  V  V  D  R  M  T  F  E  T  V  K  R  L  *  C  W  V  C  V  R  *  R  G  D  A  F  L  G  *  L  W  K  V  *  V  D  L  G  R  R  V  E  D  F  D  E  D  G  G  R  V  L  E  K  T  G  D  G  D  A  V  V </second_frame>
            <third_frame>   W  N  D  E  Q  A  H  L  R  H  A  G  L  F  S  R :   C  C  L  C  A  L  M  G  C  H  C  F  Y  F  P  L  D  E   : G  V  V  A  N  D  E  G  K  M  :  L  C  *  S  D  F   : E  S  F  T  Q  *  K  T  F  K  *  T  *  I  L  S  L  F  *  I  I  Q  C  L  E  L  V  M  *  L  L  K  V  N  R  N  V  S  H  H  P  P  *  S  H  L  *  K  H  R  H  W  E  S  S  V  E  H  A  P  D  E  V  Q  S  H  P  T  S  M  A  Q  E  C  L  T  S  F  E  W  Q  L  *  D  H  P  C  V  T  L  L  Q  Q  V  R  H  K  P  L  Q  I  S  A  Y  *  G  R  S  L  P  H  *  Q  D  Y  P  S  K  C  V  L  C  *  P  Y  R  I  D  P  P  T  E  P  P  F  P  S  V  D  Y  S  A  T  *  S  *  L  G  D  S  P  P  *  L  L  P  T  P  A  H  S  *  *  N  S  H  H  H  Q  Y  Q  P  Q  S  H  P  V  F  Q  Q  P  H  L  *  Q  Q  A  N  Q  I  P  L  L  L  I  H  Q  M  *  A  I  G  V  A  F  C  T  C  S  V  G  Q  P  T  F  G  V  A  P  H  Q  Y  *  *  W  H  F  R  *  L  T  H  Q  E  P  E  *  H  I  G  E  G  W  L  H  R  K  S  *  N  S  M  G  T  S  P  S  A  P  L  T  P  A  S  K  Q  K  S  P  T  S  A  Y  L  F  Y  S  R  I  W  N  S  N  P  V  M  P  T  *  Y  L  H  R  W  K  H  E  V  A  C  S  F  Q  S  Q  P  N  Q  Y  Q  Y  G  Q  S  *  L  G  *  Q  K  L  P  I  Y  Q  *  L  D  H  Q  T  S  P  Q  M  Q  A  T  N  H  Y  Y  P  P  H  N  *  H  T  Q  S  H  A  Y  P  T  F  E  E  K  A  H  P  H  L  E  K  L  Q  D  P  S  K  Y  S  P  Q  E  Y  P  *  A  P  Q  S  V  S  A  P  H  S  T  V  N  T  H  H  P  H  T  K  Q  A  S  L  T  L  K  S  A  *  Q  F  V  P  K  A  S  H  *  V  I  *  A  T  *  T  C  N  Q  A  T  S  L  A  D  P  N  *  V  S  P  I  V  A  E  Y  P  *  E  H  Q  S  K  Q  V  Q  A  V  L  I  S  L  E  K  T  L  H  E  Q  P  *  E  Y  P  L  H  P  *  Q  D  N  Y  A  S  *  W  I  S  L  P  Q  Q  *  E  F  P  E  T  H  Q  Y  Q  S  S  S  S  A  L  D  R  *  *  Q  Q  S  G  Y  Y  P  T  K  H  Q  Q  D  R  *  Q  D  S  *  L  P  D  Q  M  *  Q  Y  K  H  Q  G  T  Q  *  P  V  R  N  P  L  Q  Q  T  H  H  P  V  H  D  V  A  A  H  Y  E  *  Y  L  N  V  S  K  P  D  E  S  P  W  K  H  L  L  G  M  Q  T  H  P  *  P  L  P  F  Q  V  P  P  Q  E  H  H  N  P  F  W  V  R  Q  G  R  N  G  K  Q  R  F  R  V  Q  K  R  R  H  A  S  W  L  I  G  *  H  L  K  Q  *  N  G  Y  D  V  G  C  V  *  G  E  G  V  M  L  F  *  G  D  C  G  K  Y  R  *  I  W  E  E  G  W  K  I  L  M  K  M  E  V  G  F  W  K  K  Q  E  M  E  M  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21867" stop="21544"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CQLDICTDGNMRLLVLSNLSRININMDNLSSASKSFQFTSNSIIKPHPKCKQQITTIHRIISIHSPMHTQHLKRKLIPTWKSSKTHQSTRHRNTRKLHKASQLLTRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21333" stop="21010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRFTNNPRNILYIHNKIIMLRNGSRYLNNRSFLKRISTNHPPRHLTGNSNNRDTIQQSISKTANKIRSSRTRCSNTNTREPSSPCVTLCSKHTTLFMTWQHITNNI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22458" stop="22141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSCSRYATSLCKFQHIREDLFLISRITQVSVCSVSLIESILPLNHHSQVLIIQQHNLNWEILHLNCCQLLHIHDKTPITININHNLTRSSNSRTYSSRQTKSHCS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24836" stop="24788"/>
                    <exon start="24698" stop="24643"/>
                    <exon start="23367" stop="23339"/>
                    <exon start="22954" stop="22936"/>
                    <exon start="22722" stop="22678"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGMMNKLIFVMLGYFRVVVYVLSWVVIAFIFLLMKVLLLMMKAKCCANLILNPSHNEKLLSKHKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23135" PGL_stop="23759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23135" e_stop="23759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23135" e_stop="23759" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23135" stop="23759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</gDNA_template>
            <first_frame> Y  L  L  I  H  C  K  C  W  F  K  P  E  L  P  R  G  F  P  R  S  F  T  Q  G  F  T  *  D  Q  L  S  S  P  E  K  F  *  Q  S  W  R  A  Y  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  Q  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  S  N  N  T  Y  R  R  W  K  R  E  R  C  R  K  W  E  K  F  H  K  W  G  K  T  K  R  I  L  K  D  A  G  K  S  V  G  G  G  I  K  E  V  M  S  G  K  S  S  G  K  S  K  E  E  V  E  S  S  E  T  E  R  M  S  S  V  E  S  D  I  S  D  A  E  S  Q  P  S  S  V  D  S  P  P  V  V  A  P  S  V  D  N  S  S  T  A  S  S  G  I  E  T  S  L  L  M  *  N  C  D  I  R  D  V  I  *  N  I  F  G  V  T  L  G  R  T  Y  F  S  V  L  T  N  </first_frame>
            <second_frame>  I  F  L  F  T  V  N  V  G  L  S  L  N  Y  L  G  D  S  P  G  R  L  H  R  G  L  H  K  I  S  S  V  L  R  R  S  S  S  N  L  G  E  P  I  S  S  L  H  V  N  L  R  A  V  N  A  K  D  I  R  V  K  I  I  V  D  D  T  I  L  P  S  S  L  A  T  T  P  T  E  D  G  K  E  N  G  A  G  N  G  K  S  F  T  N  G  A  R  R  R  E  S  L  K  M  L  A  N  L  L  V  V  A  *  R  K  *  C  L  G  S  H  Q  G  N  L  K  R  K  *  N  H  Q  R  P  K  E  *  A  L  W  N  L  I  F  L  M  Q  S  L  N  L  H  Q  L  I  H  L  Q  L  *  R  L  L  L  T  T  V  P  Q  P  A  P  V  L  R  L  L  S  *  C  R  I  V  I  Y  A  M  *  Y  K  T  Y  L  V  L  H  L  D  E  L  I  F  Q  F  *  P  T </second_frame>
            <third_frame>   S  S  Y  S  L  *  M  L  V  *  A  *  I  T  *  G  I  P  Q  V  V  Y  T  G  V  Y  I  R  S  A  Q  F  S  G  E  V  L  A  I  L  E  S  L  F  H  L  C  M  *  I  L  G  Q  L  M  P  R  I  S  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  Q  H  L  Q  K  M  E  K  R  T  V  Q  E  M  G  K  V  S  Q  M  G  Q  D  E  E  N  P  *  R  C  W  Q  I  C  W  W  W  H  K  G  S  D  V  W  E  V  I  R  E  I  *  R  G  S  R  I  I  R  D  R  K  N  E  L  C  G  I  *  Y  F  *  C  R  V  S  T  F  I  S  *  F  T  S  S  C  S  A  F  C  *  Q  Q  F  H  S  Q  L  R  Y  *  D  F  S  L  D  V  E  L  *  Y  T  R  C  N  I  K  H  I  W  C  Y  T  W  T  N  L  F  F  S  F  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23336" stop="23680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHFAFIISNNTYRRWKRERCRKWEKFHKWGKTKRILKDAGKSVGGGIKEVMSGKSSGKSKEEVESSETERMSSVESDISDAESQPSSVDSPPVVAPSVDNSSTASSGIETSLLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23136" stop="23477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFTVNVGLSLNYLGDSPGRLHRGLHKISSVLRRSSSNLGEPISSLHVNLRAVNAKDIRVKIIVDDTILPSSLATTPTEDGKENGAGNGKSFTNGARRRESLKMLANLLVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="25578" PGL_stop="24990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25578" e_stop="25567"/>
            <exon e_start="25491" e_stop="24990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25578" e_stop="25567" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.925">
            <gDNA_intron_boundary i_start="25566" i_stop="25492" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="25491" e_stop="24990" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25578" stop="25567"/>
              <exon start="25491" stop="24990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACAGCCTG : ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</gDNA_template>
            <first_frame> F  N  S  L  :  I  S  V  V  T  I  Y  V  F  L  Y  G  Q  L  Y  M  V  L  S  G  L  Q  R  A  L  L  V  E  A  K  L  Q  N  I  K  S  L  E  T  A  L  A  S  Q  S  F  I  Q  L  G  L  L  T  G  L  P  M  V  I  E  L  G  L  E  R  G  Y  L  N  A  L  K  D  F  V  L  M  Q  L  Q  L  A  A  V  F  F  T  F  S  Y  G  T  K  S  H  Y  Y  G  R  T  I  L  H  G  G  A  K  Y  R  P  T  G  R  K  V  V  V  F  H  A  S  F  T  E  N  Y  R  L  Y  S  R  S  H  F  V  K  G  F  E  L  L  L  L  L  I  V  Y  D  L  F  R  R  S  Y  E  S  N  L  A  Y  V  L  T  T  Y  A  I  </first_frame>
            <second_frame>  S  T  A  * :   Y  Q  W  L  R  F  M  C  F  Y  T  V  S  S  T  W  Y  *  V  V  Y  K  E  H  Y  *  L  R  Q  N  Y  K  T  *  S  H  W  K  Q  L  *  L  L  N  H  L  S  S  L  D  F  *  Q  G  Y  Q  W  S  L  S  W  D  *  S  A  V  I  L  M  L  L  K  I  L  F  *  C  N  C  S  W  L  Q  F  S  L  L  S  P  M  E  Q  S  L  I  T  M  A  E  Q  F  F  M  E  V  L  S  I  D  L  L  V  V  K  L  W  F  F  M  P  A  S  L  K  T  I  D  F  T  L  G  V  T  S  S  K  D  L  N  F  Y  S  C  *  L  F  M  I  C  L  D  D  R  M  R  A  I  W  H  M  F  *  L  H  M  Q  Y </second_frame>
            <third_frame>   Q  Q  P   : D  I  S  G  Y  D  L  C  V  S  I  R  S  A  L  H  G  I  K  W  S  T  K  S  T  T  S  *  G  K  T  T  K  H  K  V  T  G  N  S  S  S  F  S  I  I  Y  P  A  W  T  F  N  R  V  T  N  G  H  *  V  G  T  R  A  R  L  S  *  C  S  *  R  F  C  S  D  A  T  A  A  G  C  S  F  L  Y  F  L  L  W  N  K  V  S  L  L  W  Q  N  N  S  S  W  R  C  *  V  *  T  Y  W  S  *  S  C  G  F  S  C  Q  L  H  *  K  L  *  T  L  L  S  E  S  L  R  Q  R  I  *  T  S  T  P  V  D  C  L  *  F  V  *  T  I  V  *  E  Q  F  G  I  C  F  N  Y  I  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25578" stop="25567"/>
                    <exon start="25491" stop="24991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNSLISVVTIYVFLYGQLYMVLSGLQRALLVEAKLQNIKSLETALASQSFIQLGLLTGLPMVIELGLERGYLNALKDFVLMQLQLAAVFFTFSYGTKSHYYGRTILHGGAKYRPTGRKVVVFHASFTENYRLYSRSHFVKGFELLLLLIVYDLFRRSYESNLAYVLTTYAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="64782" PGL_stop="60951"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64782" e_stop="64028"/>
            <exon e_start="63325" e_stop="63308"/>
            <exon e_start="62904" e_stop="62900"/>
            <exon e_start="61805" e_stop="61793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.900" acc_prob="0.799" e_score="0.667"/>
          <exon-intron don_prob="0.475" acc_prob="0.969" e_score="0.600"/>
          <exon-only e_score="0.538"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="64782" e_stop="64028" e_length="755"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64027" i_stop="63326" i_length="702"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="63325" e_stop="63308" e_length="18"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.799">
            <gDNA_intron_boundary i_start="63307" i_stop="62905" i_length="403"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="62904" e_stop="62900" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.969">
            <gDNA_intron_boundary i_start="62899" i_stop="61806" i_length="1094"/>
          </intron>
          <exon e_serial="4" e_score="0.538">
            <gDNA_exon_boundary e_start="61805" e_stop="61793" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64782" stop="64028"/>
              <exon start="63325" stop="63308"/>
              <exon start="62904" stop="62900"/>
              <exon start="61805" stop="61793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAAGACCTATGA : ACAAAAAAAGATTTAGCT : GGAGC : GTGGCGAGGTGGA</gDNA_template>
            <first_frame> F  F  S  S  N  F  L  L  S  I  K  A  N  L  L  Q  K  N  L  S  I  F  Q  L  L  F  Y  L  I  F  N  M  S  M  A  T  Y  C  N  N  E  N  L  A  L  S  N  I  E  N  D  V  F  M  S  F  L  E  E  P  E  F  E  A  S  D  E  E  L  L  R  S  V  I  E  S  L  E  V  E  N  I  V  P  S  V  N  T  N  D  S  I  L  F  E  Q  M  K  V  E  N  S  T  N  L  S  C  D  D  L  G  E  L  E  Y  C  W  I  D  S  D  M  D  S  S  T  P  S  D  D  D  D  M  N  I  W  F  K  D  C  Y  Y  D  Q  N  G  V  E  D  F  T  N  F  V  G  A  C  R  E  F  S  W  E  E  S  C  E  S  M  L  Y  A  P  D  V  *  Y  S  Y  W  S  S  T  N  L  D  S  H  *  Y  *  G  I  H  C  F  L  V  K  V  T  L  Y  S  E  R  F  K  S  E  I  S  N  *  G  *  R  S  T  Y  R  *  S  L  R  *  E  Y  *  L  T  R  F  S  W  Q  L  *  I  P  Y  *  Y  K  F  F  L  L  K  T  Y  E :   Q  K  K  I  *  L :   E   : R  G  E  V   </first_frame>
            <second_frame>  F  F  P  L  I  F  C  Y  Q  L  K  L  I  F  S  K  K  I  F  Q  F  F  N  F  S  F  I  S  Y  S  T  C  Q  W  P  H  I  V  I  M  K  I  L  H  L  A  I  L  R  T  M  F  S  C  H  F  L  K  N  Q  N  L  R  Q  V  M  K  S  Y  *  E  V  *  L  S  H  *  K  *  R  I  L  F  L  V  L  I  Q  M  I  Q  F  C  L  S  K  *  K  *  R  I  Q  L  I  C  L  V  M  I  L  V  N  L  N  I  V  G  L  I  Q  T  W  I  L  Q  L  L  V  M  M  M  I  *  I  F  G  S  R  I  V  T  M  I  K  M  E  L  K  I  S  L  T  L  L  A  H  V  G  S  F  L  G  K  N  L  V  N  L  C  F  M  H  L  M  S  D  I  H  I  G  A  Q  L  I  W  I  R  I  S  I  E  G  F  I  V  S  S  *  R  *  L  C  T  L  K  D  S  N  L  K  S  L  I  K  D  E  G  V  L  I  D  S  H  *  D  R  S  I  D  *  H  V  F  H  G  N  C  K  S  H  I  S  I  N  S  F  Y  *  R  P  M   : N  K  K  R  F  S   : W  S  :  V  A  R  W  </second_frame>
            <third_frame>   F  F  L  *  F  F  V  I  N  *  S  *  S  S  P  K  K  S  F  N  F  S  T  S  L  L  S  H  I  Q  H  V  N  G  H  I  L  *  *  *  K  S  C  T  *  Q  Y  *  E  R  C  F  H  V  I  S  *  R  T  R  I  *  G  K  *  *  R  V  I  K  K  C  D  *  V  I  R  S  R  E  Y  C  S  *  C  *  Y  K  *  F  N  F  V  *  A  N  E  S  R  E  F  N  *  F  V  L  *  *  S  W  *  T  *  I  L  L  D  *  F  R  H  G  F  F  N  S  *  *  *  *  *  Y  E  Y  L  V  Q  G  L  L  L  *  S  K  W  S  *  R  F  H  *  L  C  W  R  M  *  G  V  F  L  G  R  I  L  *  I  Y  A  L  C  T  *  C  L  I  F  I  L  E  L  N  *  S  G  F  A  L  V  L  R  D  S  L  F  P  R  K  G  D  F  V  L  *  K  I  Q  I  *  N  L  *  L  R  M  K  E  Y  L  *  I  V  I  E  I  G  V  L  I  N  T  F  F  M  A  I  V  N  P  I  L  V  *  I  L  F  T  K  D  L  *  :  T  K  K  D  L  A  :  G  A :   W  R  G  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64782" stop="64255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSSNFLLSIKANLLQKNLSIFQLLFYLIFNMSMATYCNNENLALSNIENDVFMSFLEEPEFEASDEELLRSVIESLEVENIVPSVNTNDSILFEQMKVENSTNLSCDDLGELEYCWIDSDMDSSTPSDDDDMNIWFKDCYYDQNGVEDFTNFVGACREFSWEESCESMLYAPDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62756" e_stop="61879"/>
            <exon e_start="61805" e_stop="61518"/>
            <exon e_start="60983" e_stop="60951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.758"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62756" e_stop="61879" e_length="878"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="61805" e_stop="61518" e_length="288"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61517" i_stop="60984" i_length="534"/>
          </intron>
          <exon e_serial="3" e_score="0.758">
            <gDNA_exon_boundary e_start="60983" e_stop="60951" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62756" stop="61879"/>
              <exon start="61805" stop="61518"/>
              <exon start="60983" stop="60951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGGATAACCCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTA : AAAAAGCAAAAGAAGAACAAGAAAAATGAAAAA</gDNA_template>
            <first_frame> C  G  *  P  N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  Y  L  R  W  N  S  L  L  L  I  F  V  P  L  S  L  P  L  *  V  L  D  F  Y  D  K  S  D  *  F  T  N  * :   K  S  K  R  R  T  R  K  M  K   </first_frame>
            <second_frame>  V  D  N  P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I  T  F  V  G  I  V  Y  S  *  F  S  F  R  S  H  C  H  F  E  F  L  I  F  M  I  R  V  I  S  L  L  I   : K  K  A  K  E  E  Q  E  K  *  K  </second_frame>
            <third_frame>   W  I  T  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P  L  P  S  L  E  *  F  T  L  D  F  R  S  A  L  I  A  T  L  S  S  *  F  L  *  *  E  *  L  V  Y  *  L  :  K  K  Q  K  K  N  K  K  N  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62755" stop="61879"/>
                    <exon start="61805" stop="61768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDNPIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80157" PGL_stop="76513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80157" e_stop="79846"/>
            <exon e_start="79076" e_stop="79011"/>
            <exon e_start="77650" e_stop="77578"/>
            <exon e_start="77108" e_stop="76991"/>
            <exon e_start="76723" e_stop="76513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80157" e_stop="79846" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79076" e_stop="79011" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77650" e_stop="77578" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.886">
            <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77108" e_stop="76991" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76990" i_stop="76724" i_length="267"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="76723" e_stop="76513" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80157" stop="79846"/>
              <exon start="79076" stop="79011"/>
              <exon start="77650" stop="77578"/>
              <exon start="77108" stop="76991"/>
              <exon start="76723" stop="76513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG : TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG : GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT : GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT : GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</gDNA_template>
            <first_frame> Q  K  F  Q  L  F  L  V  D  N  S  K  F  Q  L  *  V  K  E  A  R  T  V  I  I  T  T  M  A  T  T  M  T  T  T  T  T  T  M  D  T  T  I  T  T  K  R  R  P  N  H  P  H  H  G  Y  Q  Q  H  H  Q  K  *  L  N  M  V  L  F  N  H  L  L  N  Q  *  L  V  F  L  C  Q  F  L  H  L  D  Q  Y  L  N  L  L  N  T  M  L  V  A  I  I  L  F  Q  :  F  L  H  L  E  Q  Y  L  N  L  L  N  T  M  L  V  A  I  S  P  F  Q  :  V  M  *  L  M  R  G  D  L  *  Q  S  P  A  F  L  S  V  L  V  L  A  G  S   : C  S  L  L  V  S  F  L  L  A  S  L  G  M  L  L  H  L  S  R  F  A  T  D  Q  L  I  I  E  R  N  Q  D  S  L  H  A  P  L  L :   L  F  S  L  *  L  V  I  S  Y  L  G  *  H  G  Y  Y  *  Q  H  N  G  D  Q  L  L  W  S  I  R  V  L  A  S  L  L  D  *  C  T  F  Y  S  E  H  F  C  K  T  K  V  T  C  Y  N  *  I  N  N  Y  M  C  F  L  Y  *  S  E  I  I </first_frame>
            <second_frame>  K  N  F  N  Y  F  *  L  I  T  P  N  F  N  Y  E  *  R  R  Q  G  Q  S  L  S  P  P  W  P  P  L  *  P  P  P  P  P  L  W  T  P  P  S  P  P  R  E  D  P  T  T  P  T  M  A  T  N  S  T  T  R  S  S  *  I  W  Y  F  S  T  T  S  S  T  S  N  W  F  S  S  A  S  S  S  T  W  I  S  T  *  T  F  *  I  L  C  S  W  L  S  F  C  S  S :   S  S  T  W  S  S  T  *  T  F  *  I  L  C  S  W  L  S  V  R  S  R :   L  C  D  *  *  E  E  T  C  N  R  A  P  P  S  F  R  Y  W  S  W  L  V  L  :  V  H  Y  W  F  L  S  C  W  L  P  L  V  C  C  C  I  Y  P  A  L  Q  Q  I  N  *  S  S  R  E  I  R  I  R  C  M  H  H  C   : C  C  S  R  C  N  W  *  Y  R  I  W  V  D  M  D  I  I  N  S  I  M  V  I  N  F  C  G  V  F  V  F  *  L  V  C  L  I  N  A  H  F  I  Q  N  I  S  V  K  Q  K  L  H  V  I  I  K  *  I  I  I  C  A  S  C  I  N  Q  K  *   </second_frame>
            <third_frame>   K  I  S  T  I  F  S  *  *  L  Q  I  S  I  M  S  E  G  G  K  D  S  H  Y  H  H  H  G  H  H  Y  D  H  H  H  H  H  Y  G  H  H  H  H  H  Q  E  K  T  Q  P  P  P  P  W  L  P  T  A  P  P  E  V  A  E  Y  G  T  F  Q  P  P  P  Q  P  V  I  G  F  P  L  P  V  P  P  P  G  S  V  L  E  P  S  E  Y  Y  A  R  G  Y  H  S  V  P   : V  P  P  P  G  A  V  L  E  P  S  E  Y  Y  A  R  G  Y  Q  S  V  P   : G  Y  V  I  D  E  R  R  P  V  T  E  P  R  L  P  F  G  I  G  L  G  W  F  L :   F  I  I  G  F  F  L  A  G  F  P  W  Y  V  A  A  F  I  P  L  C  N  R  S  I  D  H  R  E  K  S  G  F  V  A  C  T  I  A  :  A  V  L  A  V  I  G  N  I  V  F  G  L  T  W  I  L  L  T  A  *  W  *  S  T  S  V  E  Y  S  C  S  S  *  F  A  *  L  M  H  I  L  F  R  T  F  L  *  N  K  S  Y  M  L  *  L  N  K  *  L  Y  V  L  P  V  L  I  R  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80128" stop="79846"/>
                    <exon start="79076" stop="79011"/>
                    <exon start="77650" stop="77578"/>
                    <exon start="77108" stop="76991"/>
                    <exon start="76723" stop="76661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQISIMSEGGKDSHYHHHGHHYDHHHHHYGHHHHHQEKTQPPPPWLPTAPPEVAEYGTFQPPPQPVIGFPLPVPPPGSVLEPSEYYARGYHSVPVPPPGAVLEPSEYYARGYQSVPGYVIDERRPVTEPRLPFGIGLGWFLFIIGFFLAGFPWYVAAFIPLCNRSIDHREKSGFVACTIAAVLAVIGNIVFGLTWILLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="86405" PGL_stop="81092"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86405" e_stop="86097"/>
            <exon e_start="84555" e_stop="84427"/>
            <exon e_start="84300" e_stop="84193"/>
            <exon e_start="83064" e_stop="82930"/>
            <exon e_start="82261" e_stop="82220"/>
            <exon e_start="82107" e_stop="82048"/>
            <exon e_start="81965" e_stop="81912"/>
            <exon e_start="81604" e_stop="81580"/>
            <exon e_start="81499" e_stop="81163"/>
            <exon e_start="81107" e_stop="81092"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="86405" e_stop="86097" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84555" e_stop="84427" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84300" e_stop="84193" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83064" e_stop="82930" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82261" e_stop="82220" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82107" e_stop="82048" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81965" e_stop="81912" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81604" e_stop="81580" e_length="25"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="81499" e_stop="81163" e_length="337"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81162" i_stop="81108" i_length="55"/>
          </intron>
          <exon e_serial="10" e_score="0.812">
            <gDNA_exon_boundary e_start="81107" e_stop="81092" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86405" stop="86097"/>
              <exon start="84555" stop="84427"/>
              <exon start="84300" stop="84193"/>
              <exon start="83064" stop="82930"/>
              <exon start="82261" stop="82220"/>
              <exon start="82107" stop="82048"/>
              <exon start="81965" stop="81912"/>
              <exon start="81604" stop="81580"/>
              <exon start="81499" stop="81163"/>
              <exon start="81107" stop="81092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCATCGCCAGTTGGAAAGTTACTTTCCATTGACGTCACTCTTCTTGTAAAATACGGGAACATTTTATAGAGATAATCGACAGTAAAGATAAGATCATGCTGAGATTCCGATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC : GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG : GAAACATTCAAAAACATCATGCAGA : ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCTGAATTATAGTAGCAATTCAGATCCAA : AAAAAAGAAGAAAAAT</gDNA_template>
            <first_frame> K  T  I  A  S  W  K  V  T  F  H  *  R  H  S  S  C  K  I  R  E  H  F  I  E  I  I  D  S  K  D  K  I  M  L  R  F  R  W  F  E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  T  K  F  P  G  V  K  S  I  I  S  K  A  S  N  A  K  A  D  I  F  V  E  P  G  D  K  I  Y  F  G  D  I  F  L  E  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D  Y  K  G  F  T  :  V  S  S  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  M  D  V  A  V  P  A  N  M  V  C  G  L  Q  E  T  K  S  E  A  C  *  I  L  L  S  W  S  L  R  M  *  M  G  S  K  V  Y  T  I  *  S  E  S  *  Q  N  N  V  *  L  E  K  L  N  K  I  L  F  Q  E  A  M  *  F  *  L  I  R  I  L  N  I  C  M  *  L  D  F  *  D  G  N  N  E  K  *  N  L  S  V  A  A  F  S  E  L  *  *  Q  F  R  S  K :   K  K  K  K  N </first_frame>
            <second_frame>  K  P  S  P  V  G  K  L  L  S  I  D  V  T  L  L  V  K  Y  G  N  I  L  *  R  *  S  T  V  K  I  R  S  C  *  D  S  D  G  S  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   Q  S  S  L  V  *  N  Q  S  Y  Q  K  Q  A  M  Q  K  L  I  F  L  L  N  L  V  I  R  S  T  L  V  I  F  F  W  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M  T  T  K  G  S  P :   S  A  Q  W  E  R  R  C  Y  T  I  H  A  Y  Q  K  I  R :   K  H  S  K  T  S  C  R  :  I  *  I  C  H  I  Q  K  *  W  T  S  Q  F  Q  L  T  W  F  V  D  Y  K  R  Q  N  Q  K  L  A  K  F  F  F  H  G  H  Y  E  C  K  W  E  A  R  Y  T  R  F  E  A  K  V  N  K  I  M  F  S  W  R  S  *  I  R  Y  C  S  K  K  L  C  S  F  N  *  *  E  S  *  I  Y  V  C  N  L  I  S  E  M  G  I  M  K  S  E  I  Y  Q  L  L  H  F  L  N  Y  S  S  N  S  D  P   : K  K  R  R  K   </second_frame>
            <third_frame>   N  H  R  Q  L  E  S  Y  F  P  L  T  S  L  F  L  *  N  T  G  T  F  Y  R  D  N  R  Q  *  R  *  D  H  A  E  I  P  M  V  R  S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : D  K  V  P  W  C  E  I  N  H  I  K  S  K  Q  C  K  S  *  Y  F  C  *  T  W  *  *  D  L  L  W  *  Y  F  S  G   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  L  Q  R  V  H   : R  Q  L  S  G  R  G  D  A  I  Q  S  T  P  I  K  R  *   : G  N  I  Q  K  H  H  A  E :   F  E  F  V  I  S  K  N  D  G  R  R  S  S  S  *  H  G  L  W  I  T  R  D  K  I  R  S  L  L  N  S  S  F  M  V  T  T  N  V  N  G  K  Q  G  I  H  D  L  K  R  K  L  T  K  *  C  L  A  G  E  V  E  *  D  I  V  P  R  S  Y  V  V  L  T  D  K  N  L  E  Y  M  Y  V  T  *  F  L  R  W  E  *  *  K  V  K  F  I  S  C  C  I  F  *  I  I  V  A  I  Q  I  Q  :  K  K  E  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86369" stop="86097"/>
                    <exon start="84555" stop="84427"/>
                    <exon start="84300" stop="84193"/>
                    <exon start="83064" stop="82930"/>
                    <exon start="82261" stop="82220"/>
                    <exon start="82107" stop="82048"/>
                    <exon start="81965" stop="81912"/>
                    <exon start="81604" stop="81580"/>
                    <exon start="81499" stop="81408"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHSSCKIREHFIEIIDSKDKIMLRFRWFEAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKTKFPGVKSIISKASNAKADIFVEPGDKIYFGDIFLEVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHDYKGFTVSSVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMMDVAVPANMVCGLQETKSEAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86285" e_stop="86097"/>
            <exon e_start="84555" e_stop="84427"/>
            <exon e_start="83064" e_stop="82930"/>
            <exon e_start="82261" e_stop="82220"/>
            <exon e_start="82107" e_stop="82063"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86285" e_stop="86097" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84555" e_stop="84427" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84426" i_stop="83065" i_length="1362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83064" e_stop="82930" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82261" e_stop="82220" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82107" e_stop="82063" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86285" stop="86097"/>
              <exon start="84555" stop="84427"/>
              <exon start="83064" stop="82930"/>
              <exon start="82261" stop="82220"/>
              <exon start="82107" stop="82063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</gDNA_template>
            <first_frame> E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D </first_frame>
            <second_frame>  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M   </second_frame>
            <third_frame>   S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86285" stop="86097"/>
                    <exon start="84555" stop="84427"/>
                    <exon start="83064" stop="82930"/>
                    <exon start="82261" stop="82220"/>
                    <exon start="82107" stop="82063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="93135" PGL_stop="94636"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93135" e_stop="93227"/>
            <exon e_start="93306" e_stop="93492"/>
            <exon e_start="93663" e_stop="93786"/>
            <exon e_start="94017" e_stop="94636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.957"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="93135" e_stop="93227" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93228" i_stop="93305" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93306" e_stop="93492" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="93493" i_stop="93662" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93663" e_stop="93786" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.530">
            <gDNA_intron_boundary i_start="93787" i_stop="94016" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94017" e_stop="94636" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="93227"/>
              <exon start="93306" stop="93492"/>
              <exon start="93663" stop="93786"/>
              <exon start="94017" stop="94636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG : GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG : AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG : GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</gDNA_template>
            <first_frame> K  T  G  F  Q  L  M  L  R  S  P  L  L  L  *  F  *  K  F  L  K  Q  L  T  *  S  H  Q  I  *  M  :  D  W  L  I  H  M  L  R  G  T  L  A  F  T  D  S  G  L  R  L  R  R  R  H  *  I  H  S  G  V  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  T  C  S  M  S  K  F  V  T  K  T  I  Y  M  M  I  H  W   : E  N  V  P  S  I  S  V  I  L  G  M  A  R  G  M  I  C  G  C  L  F  R  T  S  K  L  G  D  C  I  L  P  *  L  L  L  I  V  P  K  R :   A  R  S  S  H  M  I  A  E  V  W  S  M  N  R  I  A  N  L  L  R  W  I  K  L  N  K  A  P  *  P  L  N  Q  L  M  N  L  Q  K  L  E  I  S  M  N  L  L  I  L  K  G  S  G  R  L  V  Y  G  Y  T  N  Q  G  V  K  *  H  K  Y  G  N  Q  E  R  G  R  T  G  L  L  A  E  K  F  I  V  K  M  L  V  L  R  E  V  L  S  Q  H  Q  A  A  P  L  T  I  M  N  T  S  L  M  E  V  V  T  E  V  S  Q  I  L  Q  V  V  F  T  G  V  Y  I  R  S  A  R  S  S  G  E  V  Q  V  K  R  I  S  Q  A  I  L  E  S  L  I  Y  L  R  V  *  I  L  G  Q  L  M  P  R  I  *  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  H  L  Q  K  M  G  K  I  T  A  Q  E  M  G  K  T  P  Q  R  G  E  </first_frame>
            <second_frame>  K  L  V  F  S  *  C  *  G  A  H  C  F  C  D  F  R  S  S  *  S  S  *  H  E  A  I  R  F  K  W :   I  G  *  S  I  C  *  G  A  H  W  P  L  Q  I  Q  D  *  D  *  E  E  D  I  E  S  T  V  A  *  G  V  Q  D  S  S  L  Y  M  G  V  S  *  Q  H  A  Q  C  R  S  S  *  Q  R  P  F  I  *  *  Y  I  G  :  K  M  F  H  Q  Y  L  *  F  *  G  W  P  E  A  *  Y  V  A  V  S  S  E  H  Q  N  W  E  I  A  S  C  H  N  C  C  *  L  C  Q  K   : G  R  G  A  V  I  *  *  R  K  Y  G  Q  *  T  G  *  Q  I  C  *  G  G  *  N  *  T  K  L  L  N  H  *  I  S  *  *  T  F  K  N  W  R  *  V  *  T  Y  *  Y  *  R  A  A  G  D  W  Y  M  G  T  P  T  R  E  *  S  S  T  S  M  G  T  K  K  G  E  E  Q  G  Y  W  R  R  S  S  *  *  K  C  W  F  *  G  K  S  *  V  N  I  R  R  L  L  S  L  *  *  I  Q  A  *  W  K  W  *  R  K  *  A  R  F  S  R  S  F  S  Q  G  F  T  *  D  Q  L  A  L  P  E  K  F  K  *  R  G  *  V  R  Q  S  W  R  A  *  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  R  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  N  N  T  Y  R  R  W  E  R  *  L  R  R  K  W  E  K  P  H  K  G  E  S </second_frame>
            <third_frame>   N  W  F  S  A  D  A  K  E  P  I  A  F  V  I  L  E  V  L  E  A  A  D  M  K  P  S  D  L  N   : G  L  A  D  P  Y  V  K  G  H  I  G  L  Y  R  F  R  T  K  T  K  K  K  T  L  N  P  Q  W  R  E  E  F  K  I  P  V  C  T  W  E  S  P  N  N  M  L  N  V  E  V  R  D  K  D  H  L  Y  D  D  T  L  G :   K  C  S  I  N  I  C  D  F  R  D  G  Q  R  H  D  M  W  L  S  L  Q  N  I  K  I  G  R  L  H  L  A  I  T  V  V  D  C  A  K  K  :  G  A  E  Q  S  Y  D  S  G  S  M  V  N  E  Q  D  S  K  S  A  E  V  D  K  T  E  Q  S  S  L  T  T  E  S  V  D  E  P  S  K  T  G  D  K  Y  E  P  I  N  I  E  G  Q  R  E  T  G  I  W  V  H  Q  P  G  S  E  V  A  Q  V  W  E  P  R  K  G  K  N  R  V  I  G  G  E  V  H  S  E  N  A  G  S  K  G  S  L  K  S  T  S  G  G  S  S  H  Y  N  E  Y  K  L  D  G  S  G  N  G  S  K  P  D  S  P  G  R  F  H  R  G  L  H  K  I  S  S  L  F  R  R  S  S  S  K  E  D  K  S  G  N  L  G  E  P  D  L  S  P  R  V  N  L  R  A  V  N  A  K  D  I  G  V  K  I  I  V  D  D  T  I  L  P  S  S  L  T  T  P  T  E  D  G  K  D  N  C  A  G  N  G  K  N  P  T  K  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93137" stop="93227"/>
                    <exon start="93306" stop="93492"/>
                    <exon start="93663" stop="93786"/>
                    <exon start="94017" stop="94634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWFSADAKEPIAFVILEVLEAADMKPSDLNGLADPYVKGHIGLYRFRTKTKKKTLNPQWREEFKIPVCTWESPNNMLNVEVRDKDHLYDDTLGKCSINICDFRDGQRHDMWLSLQNIKIGRLHLAITVVDCAKKGAEQSYDSGSMVNEQDSKSAEVDKTEQSSLTTESVDEPSKTGDKYEPINIEGQRETGIWVHQPGSEVAQVWEPRKGKNRVIGGEVHSENAGSKGSLKSTSGGSSHYNEYKLDGSGNGSKPDSPGRFHRGLHKISSLFRRSSSKEDKSGNLGEPDLSPRVNLRAVNAKDIGVKIIVDDTILPSSLTTPTEDGKDNCAGNGKNPTKGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97980" PGL_stop="97175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97980" e_stop="97727"/>
            <exon e_start="97630" e_stop="97175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97980" e_stop="97727" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97726" i_stop="97631" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="97630" e_stop="97175" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97980" stop="97727"/>
              <exon start="97630" stop="97175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG : GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTATGGACACTGCAATTGACATTTGAGAGGCAACAAAGTTTACTAT</gDNA_template>
            <first_frame> K  K  Y  S  L  V  K  M  N  S  L  M  I  K  L  L  F  F  L  V  L  I  S  N  G  Y  S  T  K  L  D  S  Y  P  P  T  C  K  K  I  E  C  P  N  Y  D  V  I  E  S  G  K  D  Y  E  I  R  R  Y  N  S  P  M  W  M  S  T  E  P  I  D  D  T  S  F  V  S  A  T  R  I  G  F  T  R :   L  F  M  Y  I  Q  G  K  N  D  Q  H  E  K  M  D  M  T  A  P  V  M  T  Q  V  K  P  S  D  G  P  L  C  S  T  S  F  V  V  S  F  N  V  P  K  K  N  Q  P  N  P  P  S  A  E  G  L  H  P  Q  K  W  N  Q  S  S  Y  A  A  V  R  Q  F  S  G  F  V  T  D  G  D  I  P  K  Q  A  A  A  L  T  A  S  I  A  D  T  K  W  A  A  A  I  E  K  S  R  S  K  D  N  S  T  I  Y  T  V  A  Q  Y  N  S  P  F  E  F  R  A  R  V  N  E  M  W  F  T  F  V  M  D  T  A  I  D  I  *  E  A  T  K  F  T   </first_frame>
            <second_frame>  R  N  T  H  *  *  K  *  I  L  *  *  S  S  C  C  F  F  S  S  L  F  P  M  D  I  Q  Q  N  *  I  H  I  L  Q  L  V  K  K  L  N  A  Q  I  M  M  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  N  Q  L  M  I  R  H  L  F  P  P  P  E  S  V  S  P   : G  Y  L  C  I  F  K  E  R  T  I  S  M  R  K  W  I  *  Q  H  Q  L  *  H  K  L  S  Q  V  M  D  H  Y  V  P  P  H  L  L  *  V  L  T  Y  Q  R  R  I  S  Q  I  L  L  Q  L  K  A  Y  I  P  K  N  G  T  K  V  V  M  P  R  S  G  N  S  V  D  L  L  R  M  V  I  F  R  N  K  L  L  P  L  L  P  A  S  L  T  L  N  G  Q  Q  L  S  K  K  A  G  V  K  I  I  V  R  F  I  Q  L  H  N  T  T  L  P  L  S  S  G  L  E  S  M  R  C  G  L  L  L  L  W  T  L  Q  L  T  F  E  R  Q  Q  S  L  L  </second_frame>
            <third_frame>   E  I  L  T  S  K  N  E  F  F  D  D  Q  V  V  V  F  S  R  P  Y  F  Q  W  I  F  N  K  I  R  F  I  S  S  N  L  *  K  N  *  M  P  K  L  *  C  D  *  I  W  K  R  L  *  N  S  S  L  Q  F  P  Y  V  D  V  Y  *  T  N  *  *  Y  V  I  C  F  R  H  P  N  R  F  H  Q  :  V  I  Y  V  Y  S  R  K  E  R  S  A  *  E  N  G  Y  D  S  T  S  Y  D  T  S  *  A  K  *  W  T  I  M  F  H  L  I  C  C  E  F  *  R  T  K  E  E  S  A  K  S  S  F  S  *  R  P  T  S  P  K  M  E  P  K  *  L  C  R  G  Q  A  I  Q  W  I  C  Y  G  W  *  Y  S  E  T  S  C  C  P  Y  C  Q  H  R  *  H  *  M  G  S  S  Y  R  K  K  Q  E  *  R  *  *  Y  D  L  Y  S  C  T  I  Q  L  S  L  *  V  Q  G  *  S  Q  *  D  V  V  Y  F  C  Y  G  H  C  N  *  H  L  R  G  N  K  V  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97980" stop="97727"/>
                    <exon start="97630" stop="97195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLVKMNSLMIKLLFFLVLISNGYSTKLDSYPPTCKKIECPNYDVIESGKDYEIRRYNSPMWMSTEPIDDTSFVSATRIGFTRLFMYIQGKNDQHEKMDMTAPVMTQVKPSDGPLCSTSFVVSFNVPKKNQPNPPSAEGLHPQKWNQSSYAAVRQFSGFVTDGDIPKQAAALTASIADTKWAAAIEKSRSKDNSTIYTVAQYNSPFEFRARVNEMWFTFVMDTAIDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="117841" PGL_stop="118622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117841" e_stop="118622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="117841" e_stop="118622" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117841" stop="118622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</gDNA_template>
            <first_frame> E  T  V  I  G  G  A  D  T  V  R  E  G  C  C  W  G  G  G  I  D  G  G  G  G  C  G  G  C  G  G  G  *  L  K  F  L  N  N  Y  T  L  D  I  K  F  D  C  *  R  R  K  R  V  I  L  C  V  Y  *  V  A  D  Y  V  C  Y  T  K  H  L  *  I  K  K  *  T  S  Q  F  K  Y  *  S  I  *  T  S  L  I  *  N  V  M  V  Q  K  D  V  L  K  F  S  I  W  V  L  V  L  G  T  L  M  F  F  Y  L  K  V  K  *  F  L  R  I  S  G  Y  F  D  *  *  Q  R  V  A  R  T  V  N  I  K  L  D  T  C  G  L  S  N  R  R  Y  I  L  D  H  I  L  E  L  *  R  V  F  R  K  S  R  K  M  Y  H  I  H  T  S  *  S  V  R  T  F  *  P  F  *  C  N  Y  E  P  S  S  V  C  T  K  A  V  S  L  H  T  R  M  I  C  C  L  K  E  L  V  L  I  K  L  R  S  S  C  Y  K  P  Y  L  L  L  H  H  L  A  S  P  R  C  A  A  *  C  R  V  L  F  C  L  L  *  G  Y  M  V  S  L  A  S  C  P  S   </first_frame>
            <second_frame>  R  Q  *  L  V  A  L  I  R  L  G  R  V  V  V  G  V  V  A  L  M  A  E  V  V  A  V  D  V  E  V  V  D  L  S  F  *  I  I  I  H  *  T  *  S  S  I  V  K  G  E  N  V  *  F  Y  V  F  I  K  L  P  I  T  Y  V  T  Q  N  T  Y  E  L  K  N  E  P  H  N  S  S  T  R  V  F  K  H  L  *  S  K  M  L  W  F  R  K  M  C  *  S  S  Q  F  G  F  W  C  W  V  L  *  C  F  F  T  *  K  L  S  D  F  *  E  F  Q  D  I  L  I  D  N  R  E  L  L  G  R  *  I  L  S  W  I  L  V  D  Y  Q  I  E  D  T  S  W  I  I  F  L  S  C  N  E  C  S  E  S  L  G  K  C  T  T  S  I  R  A  E  V  L  E  H  F  S  P  F  S  A  T  M  S  H  L  V  Y  V  L  R  L  F  H  C  I  Q  G  *  F  V  V  *  K  S  *  Y  L  S  S  *  G  R  A  V  I  N  L  T  C  Y  C  I  T  S  P  V  L  D  V  L  L  S  V  E  F  C  F  V  C  F  E  D  I  W  *  A  *  L  H  A  L  R  </second_frame>
            <third_frame>   D  S  D  W  W  R  *  Y  G  *  G  G  L  L  L  G  W  W  H  *  W  R  R  W  L  R  W  M  W  R  W  L  T  *  V  S  K  *  L  Y  I  R  H  K  V  R  L  L  K  E  K  T  C  N  F  M  C  L  L  S  C  R  L  R  M  L  H  K  T  P  M  N  *  K  M  N  L  T  I  Q  V  L  E  Y  L  N  I  S  N  L  K  C  Y  G  S  E  R  C  V  E  V  L  N  L  G  F  G  A  G  Y  F  N  V  F  L  L  K  S  *  V  I  F  K  N  F  R  I  F  *  L  I  T  E  S  C  S  D  G  K  Y  *  A  G  Y  L  W  I  I  K  *  K  I  H  L  G  S  Y  S  *  A  V  T  S  V  Q  K  V  *  E  N  V  P  H  P  Y  E  L  K  C  *  N  I  L  A  L  L  V  Q  L  *  A  I  *  C  M  Y  *  G  C  F  I  A  Y  K  D  D  L  L  F  E  R  V  S  T  Y  Q  A  K  V  E  L  L  *  T  L  P  V  T  A  S  P  R  Q  S  *  M  C  C  L  V  *  S  S  V  L  F  A  L  R  I  Y  G  K  P  S  F  M  P  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118259" stop="118459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSWILVDYQIEDTSWIIFLSCNECSESLGKCTTSIRAEVLEHFSPFSATMSHLVYVLRLFHCIQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="118814" PGL_stop="119653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118814" e_stop="119007"/>
            <exon e_start="119157" e_stop="119653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118814" e_stop="119007" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="119008" i_stop="119156" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119157" e_stop="119653" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118814" stop="119007"/>
              <exon start="119157" stop="119653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345178" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG : GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</gDNA_template>
            <first_frame> F  F  L  C  Y  Y  *  T  S  Y  N  W  L  A  A  N  F  S  F  K  V  T  L  L  C  R  R  D  T  Y  P  S  Y  P  L  Q  L  L  I  *  T  I  R  *  P  N  Y  W  L  *  V  P  S  W  M  A  P  S  N  M  K  S  M  E  R :   F  C  C  F  E  V  C  G  W  T  Y  V  R  S  L  S  A  V  L  R  H  P  R  N  N  H  L  Q  V  K  V  I  T  T  S  V  T  R  Q  I  G  F  S  A  *  I  L  H  S  G  V  L  L  K  E  R  I  D  S  C  T  W  R  *  S  T  Y  R  E  C  Y  S  K  K  Q  S  I  Q  *  L  N  S  Y  C  I  C  F  *  C  S  V  L  V  I  L  L  C  N  M  M  F  C  I  H  Q  H  E  L  W  C  S  T  L  N  Q  R  T  R  I  R  A  S  G  M  E  K  I  L  L  R  K  P  L  L  N  R  S  C  T  V  R  F  G  F  N  R  S  S  N  V  G  S  *  H  W  M  G  K  P  K  K  K  T  *  C  </first_frame>
            <second_frame>  F  F  Y  V  I  I  E  R  H  T  T  G  *  L  L  T  L  V  S  K  *  H  C  C  A  E  G  I  L  I  P  P  I  L  Y  S  C  *  Y  K  Q  F  G  D  Q  T  I  G  F  R  C  R  V  G  W  P  H  Q  I  *  N  P  W  K   : G  F  A  A  L  R  C  V  D  G  H  M  L  G  L  Y  Q  P  S  *  G  I  L  E  T  T  T  C  R  *  K  *  S  R  L  L  *  Q  G  K  L  V  S  Q  H  R  F  C  I  R  V  Y  C  *  K  R  E  S  T  L  V  H  G  G  E  A  H  I  G  S  V  T  A  R  N  N  Q  Y  S  S  *  I  P  T  V  F  V  F  D  V  L  F  W  L  S  F  C  V  T  *  C  F  V  F  T  N  M  N  C  G  A  P  P  L  T  R  G  L  G  F  E  L  P  V  W  R  K  F  C  *  E  S  H  S  *  I  G  H  A  L  Y  D  L  D  S  I  G  A  P  T  W  A  P  D  T  G  W  E  N  Q  K  K  K  H  D  V </second_frame>
            <third_frame>   F  F  M  L  L  L  N  V  I  Q  L  V  S  C  *  L  *  F  Q  S  D  I  V  V  Q  K  G  Y  L  S  L  L  S  F  T  V  V  D  I  N  N  S  V  T  K  L  L  A  L  G  A  E  L  D  G  P  I  K  Y  E  I  H  G  K  :  V  L  L  L  *  G  V  W  M  D  I  C  *  V  F  I  S  R  P  K  A  S  S  K  Q  P  L  A  G  K  S  N  H  D  F  C  N  K  A  N  W  F  L  S  I  D  F  A  F  G  C  T  V  E  R  E  N  R  L  L  Y  M  E  V  K  H  I  *  G  V  L  Q  Q  E  T  I  N  T  V  A  E  F  L  L  Y  L  F  L  M  F  C  S  G  Y  P  F  V  *  H  D  V  L  Y  S  P  T  *  I  V  V  L  H  P  *  P  E  D  S  D  S  S  F  R  Y  G  E  N  F  V  E  K  A  T  L  E  *  V  M  H  C  T  I  W  I  Q  S  E  L  Q  R  G  L  L  T  L  D  G  K  T  K  K  K  N  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119422" stop="119616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVLVILLCNMMFCIHQHELWCSTLNQRTRIRASGMEKILLRKPLLNRSCTVRFGFNRSSNVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 58 chains have been computed
$ 
$ memory statistics:
$ 325328 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 20333 bytes was the average size of a spliced alignment
$ 22048 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1574 bytes was the average size of a predicted gene location
$ 71 megabytes was the average size of the backtrace matrix
$ 98 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-08 02:57:31
-->
