<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 18:06:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E370733" ref_strand="-" ref_description="SGN-E370733 	[TUS-28-L16]">
      <seq>tattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7943" stop="6648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7643" g_stop="6949" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="708"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E370733" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7643" e_stop="6949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>TATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E371150" ref_strand="-" ref_description="SGN-E371150 	[TUS-28-L17]">
      <seq>aatcagccgcacaactggaaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7928" stop="6648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7628" g_stop="6949" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="693"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E371150" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7628" e_stop="6949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>AATCAGCCGCACAACTGGAAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E314651" ref_strand="-" ref_description="SGN-E314651 	[cTOA-20-D2]">
      <seq>aaagctgatttagcaatgcagaacctaaaatgccttccatctagtcctttcnaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacatatatgttataaattgataatacaataaacatattacaccttaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7722" stop="6648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7422" g_stop="6949" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="492"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E314651" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314651" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7422" e_stop="6949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</genome_strand>
        <mrna_strand>AAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTCNAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E271032" ref_strand="+" ref_description="SGN-E271032 	[cLEM-22-B24]">
      <seq>ggaggaatcttggtttatcgttccagattgtggatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttatccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactattggctttcttggatgaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7982" stop="6691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7682" g_stop="6991" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E271032" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7682" e_stop="6991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATA</genome_strand>
        <mrna_strand>GGAGGAATCTTGGTTTATCGTTCCAGATTGTGGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTATCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E277429" ref_strand="+" ref_description="SGN-E277429 	[cLER-3-J1]">
      <seq>aaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattctttataatttggctaataaattgtcaaatttcaactgttgttgtacactaaagaaatttcacattacaaataatgtcatgtattagtatttactaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7837" stop="6713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7537" g_stop="7014" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="538"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E277429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7537" e_stop="7014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</genome_strand>
        <mrna_strand>AAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E371869" ref_strand="-" ref_description="SGN-E371869 	[TUS-30-A10]">
      <seq>gtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagcacagagtagaagctattactatagtttgaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccatacaggttgtaattttcagttcctaatacagcaatatggtgttccagcattcttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8187" stop="6801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7989" g_stop="7969" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7968" i_stop="7870" i_length="99">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7869" g_stop="7102" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="788" r_length="767" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E371869" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7989" e_stop="7969"/>
          <exon e_start="7869" e_stop="7102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATA</genome_strand>
        <mrna_strand>GTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTC-TTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E296152" ref_strand="+" ref_description="SGN-E296152 	[cLET-24-F10]">
      <seq>tggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacgaaactatacaactttggtttattattctctgaaagctcttcatatctaacaatatctggagccacaagagtagaagctattactatagttngaatggcaacaacgatcagaacgaaagtgcttcactatgttcatatattatacccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8102" stop="6858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7802" g_stop="7158" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E296152" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7802" e_stop="7158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAG-CAC-AGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATA</genome_strand>
        <mrna_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCCACAAGAGTAGAAGCTATTACTATAGTTNGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E297973" ref_strand="+" ref_description="SGN-E297973 	[cLET-38-P23]">
      <seq>tggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgatttagcaatgcagaacctaaaatgccttccatctagtccttttcaagcagcacttgaggaaatcgtgaagtataatctggagagaattgaatagacgaaaacaaaggacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8102" stop="7004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7802" g_stop="7304" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E297973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7802" e_stop="7304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGA</genome_strand>
        <mrna_strand>TGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E371151" ref_strand="+" ref_description="SGN-E371151 	[TUS-28-L17]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaagatttggcaaaggagaaagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8388" stop="7114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8167" g_stop="7969" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7968" i_stop="7870" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7869" g_stop="7414" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="655" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E371151" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8167" e_stop="7969"/>
          <exon e_start="7869" e_stop="7414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGAT</genome_strand>
        <mrna_strand>AATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E370734" ref_strand="+" ref_description="SGN-E370734 	[TUS-28-L16]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaggcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaagggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgctggttctctcgaggaggccatcaatctggtgaaaagctgtgggggaattcaacgagcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8388" stop="7138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8167" g_stop="7969" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7968" i_stop="7870" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7869" g_stop="7438" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="631" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E370734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8167" e_stop="7969"/>
          <exon e_start="7869" e_stop="7438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAA</genome_strand>
        <mrna_strand>AATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E271888" ref_strand="+" ref_description="SGN-E271888 	[cLEM-8-F20]">
      <seq>aatcattgaaatgatccatactgcaagcttgatacatgatgacgtgttagatgaaagtgacacacgaagaggaaaggagactattcaccaattatatggtactagagtggcagtactggctggtgattttatgtttgcacagtcgtcctggtacctagctaaccttgaaaaccttgaagtcataaagctcatcagtcaggttattaaagactttgcaagtggtgaaataaagcaagcctctaacttgttcgactgtgatgttggactggatgaatatttgctcaagagttactataaaacggcctccttgattgctgcaagcaccaaaggagctgccattttcagtgaagttggcagtgatattagtgaacaaatgtttcaatatgggaggaatcttggtttatcgttccagattgttgatgacatattggacttcacacaatcagccgcacaactgggaaagccagctggaagtgacttagccaaaggaaaccttactgcaccagtactttttgcattagagaaagagccaaaccttaggaatataatcgaatcagaatttcacgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8388" stop="7198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8167" g_stop="7969" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7968" i_stop="7870" i_length="99">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7869" g_stop="7498" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="571" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E271888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8167" e_stop="7969"/>
          <exon e_start="7869" e_stop="7498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTATCATAGGTTTATACATCTTTTAGAATTGGCAACATTGATATCATTATTAGTTCGTTGTACCTCAACGCCCTTTGTGGTTATTGGTTTTTATGACAGGTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCT</genome_strand>
        <mrna_strand>AATCATTGAAATGATCCATACTGCAAGCTTGATACATGATGACGTGTTAGATGAAAGTGACACACGAAGAGGAAAGGAGACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG...................................................................................................GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAAGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAAGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E377016" ref_strand="+" ref_description="SGN-E377016 	[TUS-20-I3]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatagaaacaaacttactattcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7971" stop="9199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8271" g_stop="8899" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E377016" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8271" e_stop="8899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATAGAAACAAACTTACTATTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E233212" ref_strand="+" ref_description="SGN-E233212 	[cLED-6-N18]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7971" stop="9184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8271" g_stop="8884" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E233212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8271" e_stop="8884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E241415" ref_strand="+" ref_description="SGN-E241415 	[cLED-28-F14]">
      <seq>gaagattagccgaagacaagttcctggaattgtcaagcactgcccaccaaaagcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatccttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="7971" stop="9039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8271" g_stop="8739" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E241415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8271" e_stop="8739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</genome_strand>
        <mrna_strand>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAAGCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E325054" ref_strand="+" ref_description="SGN-E325054 	[cTOC-13-L13]">
      <seq>accaaaatcgacaaagacttctaggccagagcagacaaaagcggagcatctttatgttggtgtggatgcttatatgaatcataggccagaaatgaacagtgacataattgattgcacctccggtggactcgtcaagaacgctaatagaaatagaccgccggttgtgggaacctatactgagtcaatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8016" stop="8903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8316" g_stop="8603" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E325054" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8316" e_stop="8603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</genome_strand>
        <mrna_strand>ACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATGCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E243871" ref_strand="+" ref_description="SGN-E243871 	[cLED-35-E12]">
      <seq>caatgactgcagagttctctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttatggattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8198" stop="9071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8498" g_stop="8771" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E243871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8498" e_stop="8771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAAC</genome_strand>
        <mrna_strand>CAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTATGGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E357383" ref_strand="+" ref_description="SGN-E357383 	[cTOS-23-L9]">
      <seq>ctgatgctacatcaagtgattggtccctctttacaagctcagatgaagcatcatttactactgagagtaccagatactcttttagtactgttgactatggagatgcaaacgctgctgatccgttctcttccatcatcaacagcttatgtggatcagattattcatctaacagaacagtggcgtgtagtatgttttcaagtagtaaaccgcatacaagattcttttcagaaagtaagggttctgttttggattcaactgctgggactagcataccgagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaatggaacaactggtcattttttgttattttgcagttgtaaatatgcttgctgtagctaattatcttgattctttacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8216" stop="9397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8516" g_stop="9100" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E357383" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8516" e_stop="9100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</genome_strand>
        <mrna_strand>CTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216403" ref_strand="+" ref_description="SGN-E216403 	[cLEL-13-O11]">
      <seq>tttttttttttttttttttgaactagaaaatgattgatgtgcttccattcaataaaatattgattagcaaaacagaagcacagcttgtacctagctaattcgacatataatgatttggaatttcaagaaactacacattatatggatagtaagtttgttcatatctaggctcactaccatattctacatgtacatggttactactatcactatgaaaaccttcagaataaggaacagtaacctgtctcggtatgctagtcccagcagttgaatccaaaacagaacccttactttctgaaaagaatcttgtatgcggtttactacttgaaaacatactacacgccactgttctgttagatgaataatctgatccacataagctgttgatgatggaagagaacggatcagcagcgtttgcatctccatagtcaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="110131" stop="8302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9037" g_stop="8602" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E216403" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9037" e_stop="8602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCAGTTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGTATGCTAGTCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAGAATCTTGTATGCGGTTTACTACTTGAAAACATACTACACGCCACTGTTCTGTTAGATGAATAATCTGATCCACATAAGCTGTTGATGATGGAAGAGAACGGATCAGCAGCGTTTGCATCTCCATAGTCAACAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGTATGCTAGTCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAGAATCTTGTATGCGGTTTACTACTTGAAAACATACTACACGCCACTGTTCTGTTAGATGAATAATCTGATCCACATAAGCTGTTGATGATGGAAGAGAACGGATCAGCAGCGTTTGCATCTCCATAGTCAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216050" ref_strand="-" ref_description="SGN-E216050 	[cLEL-13-O11]">
      <seq>attcttttcagaaagtaagggttctgttttggattcaactgctgggactagcattccaagacaggttactgttccttattctgaaggttttcatagtgatagtagtaaccatgtacatgtagaatatggtagtgagcctagatatgaacaaacttactatccatataatgtgtagtttcttgaaattccaaatcattatatgtcgaattagctaggtacaagctgtgcttctgttttgctaatcaatattttattgaatggaagcacatcaatcattttctagttcaaaaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="8433" stop="9320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8733" g_stop="9019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="305"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E216050" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216050" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8733" e_stop="9019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</genome_strand>
        <mrna_strand>ATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATTCCAAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216850" ref_strand="+" ref_description="SGN-E216850 	[cLEL-1-L7]">
      <seq>ttttttttttttttttttattacacaatctatcttatttgcaatatagaatgtatcattctgttcatacaaaattactagggacttgtcaactatcctttgataagtagtaacaaaagcagcctctcaaatggcaagtgctttttccaaatcaaaagtaaaccatatctcattaactctgttcttgaactcaaatggggagttgtatcccgccactgtatacaacgttgtattgtctgcagcatggcttttgtcgatggctgctgcccaattagtgccagcaatactggcactcagggcagcggcttctcttggaagggcatcatcagctataaatccactgaattgcctgaccgcgacgtaagtgtccccccatttctggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="9064" stop="10034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9350" g_stop="9734" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E216850" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9350" e_stop="9734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCAGAATCAGATTGTATTACACAATCTATCTTATTTGCAATATATAATGTAGCATTCTGTTCATACAAAATTACTAGGGACTTGTCAACTATCCTTTGATAAGTAGTAACAAAAGAAGCCTCTCAAATGGCAAGTGCTTTTTCCAAATCAAAAGTAAACCATATCTCATTAACTCTGTTCTTGAACTCAAATGGGGAGTTGTATCCCGCCACTGTATACAACGTTGTATTGTCTGCAGCATGGCTTTTGTCGATGGCTGCTGCCCAATTAGTGCCAGCAATACTGGCACTCAGGGCAGCGGCTTCTCTTGGAAGGTCATCATCAGCTATAAATCCACTGAATTGCCTGACCGCGACGTAAGTGTCCCCCCATTTCTGGAGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTATTACACAATCTATCTTATTTGCAATATAGAATGTATCATTCTGTTCATACAAAATTACTAGGGACTTGTCAACTATCCTTTGATAAGTAGTAACAAAAGCAGCCTCTCAAATGGCAAGTGCTTTTTCCAAATCAAAAGTAAACCATATCTCATTAACTCTGTTCTTGAACTCAAATGGGGAGTTGTATCCCGCCACTGTATACAACGTTGTATTGTCTGCAGCATGGCTTTTGTCGATGGCTGCTGCCCAATTAGTGCCAGCAATACTGGCACTCAGGGCAGCGGCTTCTCTTGGAAGGGCATCATCAGCTATAAATCCACTGAATTGCCTGACCGCGACGTAAGTGTCCCCCCATTTCTGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E548440" ref_strand="+" ref_description="SGN-E548440 	[TUS-61-D13]">
      <seq>gtttgtttctgttccttgtttccaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactacttatcaaaggatagttgacaagtccctagtaattttgtatgaacagaatgctacattatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10512" stop="9091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10212" g_stop="9996" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9391" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="733" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E548440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10212" e_stop="9996"/>
          <exon e_start="9907" e_stop="9391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</genome_strand>
        <mrna_strand>GTTTGTTTCTGTTCCTTGTTTCC-AATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E344561" ref_strand="+" ref_description="SGN-E344561 	[cTOF-14-E21]">
      <seq>attaaaacagcaaaaagtaataaaaatgcttagtgtaagtatgaatttgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactncccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagcacttgccatttgagaggctgcttttgttactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10577" stop="9154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10277" g_stop="9996" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9454" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="736" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E344561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10277" e_stop="9996"/>
          <exon e_start="9907" e_stop="9454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACT</genome_strand>
        <mrna_strand>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATTTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTNCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTGCTTTTGTTACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E291868" ref_strand="+" ref_description="SGN-E291868 	[cLET-7-L17]">
      <seq>tttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagtgatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaagaagaaccagccaaatcctcctccagctaaaggccttcatctccagaaatggggggacacttacgtcgcggtcaggcaattcagtggatttatagctgatgatgaccttccaagagaagccgctgccctgagtgccagtattgctggcactaattgggcagcagccatcgacaaaagccatgctgcagacaatacaacgttgtatacagtggcgggatacaactccccatttgagttcaagaacagagttaatgagatatggtttacttttgatttggaaaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10511" stop="9187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10211" g_stop="9996" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9487" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="637" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E291868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10211" e_stop="9996"/>
          <exon e_start="9907" e_stop="9487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</genome_strand>
        <mrna_strand>TTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216767" ref_strand="+" ref_description="SGN-E216767 	[cLEL-1-L7]">
      <seq>ggttatgagaatgcttagtgtaagtatgaatctgttgatgattaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattccccgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagccaagagatggacctttttgtgcttcttcatttgttgtgagtttttatgtaccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10561" stop="9472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10262" g_stop="9996" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9772" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="403" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E216767" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10262" e_stop="9996"/>
          <exon e_start="9907" e_stop="9772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</genome_strand>
        <mrna_strand>GGTTATGAGAATGCTTAGTGTAAGTATGAATCTGTTGATGATTAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCCCCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGAGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E297002" ref_strand="+" ref_description="SGN-E297002 	[cLET-26-P6]">
      <seq>aaaaatgcttagtgtaagtatgaatctgttgatgatgaggctgtgtttgtttctgttccttgtttccaaattatgcaatggttactcaacaaagttgaatttctatcctccaacttgtcaaagaattgaatgcccaaattatgatttgattgaatctggaaaagactatgaaattcgtcgttacgattcccctatgtggatgtctactgctcctattgatgatatttcatatgtttccgccaccagaactggtttcctcaggctatttgattacattcaagggaagaataagtaccatgagacagtaaagatgacagctccagttatcattcaagtgaagcctagtgatggacctttttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="10556" stop="9506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10256" g_stop="9996" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9907" g_stop="9806" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="363" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E297002" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10256" e_stop="9996"/>
          <exon e_start="9907" e_stop="9806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAGGTATTCTCACACTCATACTGGTCGGGATTGAAGCGTAGTTGTTGTTGTTTAATCTTTTCTTACTTATAATAAAATGTGGCCCTGGCAGGCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGC</genome_strand>
        <mrna_strand>AAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG........................................................................................GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCTAGTGATGGACCTTTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E287253" ref_strand="+" ref_description="SGN-E287253 	[cLES-15-G21]">
      <seq>tggccctcctttgagtttagctcctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgcgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggagtttgtattgctacatctggnccgggagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20320" stop="21430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20620" g_stop="21130" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E287253" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20620" e_stop="21130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCTCCTTTGAGTTTAGCTCCTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTA</genome_strand>
        <mrna_strand>TGGCCCTCCTTTGAGTTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGCGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGAGTTTGTATTGCTACATCTGGNCCGGGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E306126" ref_strand="+" ref_description="SGN-E306126 	[cLEY-13-F22]">
      <seq>tttagctcctcaacaacaatggcggctgcatctccatctgcttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagaaggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttaccggtcttgctgatgctttgttggatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20335" stop="21473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20635" g_stop="21173" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E306126" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20635" e_stop="21173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCTCCTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTAT</genome_strand>
        <mrna_strand>TTTAGCTCCTCAACAACAATGGCGGCTGCATCTCCATCTGCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAAGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTACCGGTCTTGCTGATGCTTTGTTGGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E347444" ref_strand="+" ref_description="SGN-E347444 	[cTOF-33-B17]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20343" stop="21604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20643" g_stop="21304" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E347444" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20643" e_stop="21304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATA</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E206903" ref_strand="+" ref_description="SGN-E206903 	[cLEC-33-L8]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcgggcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20343" stop="21533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20643" g_stop="21233" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E206903" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20643" e_stop="21233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCA</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGGCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E330184" ref_strand="+" ref_description="SGN-E330184 	[cTOD-4-A13]">
      <seq>ctcaacaacaatggcggctgcatctccatctccttgggggtccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaagctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20343" stop="21459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20643" g_stop="21159" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E330184" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20643" e_stop="21159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCT</genome_strand>
        <mrna_strand>CTCAACAACAATGGCGGCTGCATCTCCATCTCCTTGGGGGTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAAGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E212731" ref_strand="+" ref_description="SGN-E212731 	[cLEC-73-N15]">
      <seq>aacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattggtgaggtaacgagatccattacgnaagcatattatcttgttatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20347" stop="21592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20646" g_stop="21292" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E212731" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20646" e_stop="21292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACG-AAGCATAATTATCTTGTTATGG</genome_strand>
        <mrna_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGGTGAGGTAACGAGATCCATTACGNAAGCAT-ATTATCTTGTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E201852" ref_strand="+" ref_description="SGN-E201852 	[cLEC-18-E17]">
      <seq>aacaacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20347" stop="21531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20646" g_stop="21231" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E201852" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20646" e_stop="21231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTT</genome_strand>
        <mrna_strand>AACAACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E329678" ref_strand="+" ref_description="SGN-E329678 	[cTOD-3-N19]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20349" stop="21491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20649" g_stop="21191" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E329678" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20649" e_stop="21191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTAC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E244831" ref_strand="+" ref_description="SGN-E244831 	[cLEF-2-A20]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaagatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20349" stop="21436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20649" g_stop="21136" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E244831" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20649" e_stop="21136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAAGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E244832" ref_strand="+" ref_description="SGN-E244832 	[cLEF-2-A22]">
      <seq>aacaatggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaagaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20349" stop="21201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20649" g_stop="20901" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E244832" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20649" e_stop="20901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCC</genome_strand>
        <mrna_strand>AACAATGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAGAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E270338" ref_strand="+" ref_description="SGN-E270338 	[cLEM-1-I15]">
      <seq>ggggcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20355" stop="21347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20653" g_stop="21047" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E270338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20653" e_stop="21047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</genome_strand>
        <mrna_strand>GGGGCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E370567" ref_strand="+" ref_description="SGN-E370567 	[TUS-27-G14]">
      <seq>gcggctgcatctccatctccttgtttttccaaaaccctacctccatcttcatcaaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20357" stop="21624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20656" g_stop="21324" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E370567" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20656" e_stop="21324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAA</genome_strand>
        <mrna_strand>GCGGCTGCATCTCCATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E205764" ref_strand="+" ref_description="SGN-E205764 	[cLEC-21-L2]">
      <seq>ggctgcatctacatctccttgtttttccaaaaccctacctccatcttcatcaaaatctggcacccttcttcccaaatctacctggactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctgtgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20358" stop="21527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20658" g_stop="21227" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E205764" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20658" e_stop="21227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGC</genome_strand>
        <mrna_strand>GGCTGCATCTACATCTCCTTGTTTTTCCAAAACCCTACCTCCATCTTCATCAAAATCTGGCACCCTTCTTCCCAAATCTACCTGGACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTGTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E307068" ref_strand="+" ref_description="SGN-E307068 	[cLEY-15-I14]">
      <seq>ttgtttttctaaaaccctacctccatcggcatcaaaatggtccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20376" stop="21526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20676" g_stop="21226" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E307068" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20676" e_stop="21226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATG</genome_strand>
        <mrna_strand>TTGTTTTTCTAAAACCCTACCTCCATCGGCATCAAAATGGTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E300293" ref_strand="+" ref_description="SGN-E300293 	[cLEW-17-O17]">
      <seq>aaaatcttccacccttcttcccaaatctacctttactttccacaatcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20409" stop="21530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20709" g_stop="21230" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E300293" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20709" e_stop="21230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTT</genome_strand>
        <mrna_strand>AAAATCTTCCACCCTTCTTCCCAAATCTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E245965" ref_strand="+" ref_description="SGN-E245965 	[cLEF-51-I12]">
      <seq>ctacctttactttccacaatcaccctaaaaaagcatcagcccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaagctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20435" stop="21347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20735" g_stop="21047" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E245965" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20735" e_stop="21047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</genome_strand>
        <mrna_strand>CTACCTTTACTTTCCACAATCACCCTAAAAAAGCATCAGCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAAGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E332190" ref_strand="+" ref_description="SGN-E332190 	[cTOD-16-J14]">
      <seq>tcaccctaaaaaagcatcaccccttcaccttacacacacccaacatcatagccgtttcactgtttcaaatgtcatcctatcaaccacgacgcatgacgacgtttctgaacccgaaatctttgtttcccgtttcgcccctgacgaacccagaaagggttgtgatgttcttgtggaggcacttgaaagggaaggggttaaggatgtgtttgcatacccaggaggtgcttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgccctggtacatgtctaggttgcctaaattacctaatgagatgcttttggaacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20454" stop="21789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20754" g_stop="21488" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E332190" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20754" e_stop="21488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAAT</genome_strand>
        <mrna_strand>TCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCCTGGTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E348604" ref_strand="+" ref_description="SGN-E348604 	[cTOF-30-A24]">
      <seq>ttgaaagggaaggtgttacggatgtatttgcatacccaggaggtgcttctatggagattcatcaagctttgacacgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtgggtggtggggttgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccactggngatgagctttcacttcaatgttgggtatgcatggaactgtgtatgctaattatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20633" stop="21992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20933" g_stop="21693" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E348604" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20933" e_stop="21693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGT-GGG-TGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCG</genome_strand>
        <mrna_strand>TTGAAAGGGAAGGTGTTACGGATGTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGGTTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCC-ACTGGNGATGAGCTTTCACTTC-AATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E333862" ref_strand="+" ref_description="SGN-E333862 	[cTOD-24-K17]">
      <seq>gtatttgcatacccaggaggtgcttctatggagattcatcaagctttgacacgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtggggtggtgggtgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccaactggggatgagctttcacttcaaatgttgggtatgcatggaactgtgtatgctaattatgctgtggatagtagtgatttgttgcttgcatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20656" stop="22026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20956" g_stop="21726" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E333862" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20956" e_stop="21726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGT-GGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGG</genome_strand>
        <mrna_strand>GTATTTGCATACCCAGGAGGTGCTTCTATGGAGATTCATCAAGCTTTGACACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAACTGGGGATGAGCTTTCACTTCAAATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCTGTGGATAGTAGTGATTTGTTGCTTGCATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E261832" ref_strand="+" ref_description="SGN-E261832 	[cLEG-61-M14]">
      <seq>ttccatggagattcatcaggctttgacacgttcaaatattattcgtaatgtgctgccacgtcatgaacagggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgtattgctacatctggtccgggagctacgaatcttgttagcggtcttgctgatgctttgttggatagtatcccgattgttgctattaccggtcaagtgccgaggaggatgattggtactgatgcgtttcaggaaactcctattgttgaggtaacgagatccattacgaagcataattatcttgttatggatgtagaggatattcctagggttgttcgtgaagcgttttttctagcgaaatcaggacggcctggacctgttttgattgatgttcctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttgcctaaattacctaatgagatgcttttggaacaaattgttaggctgatttcagagtcaaagaagcctgttttgtatgtgggtgggtgggtgttcacagtcgagtgaggagctgagacgctttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20679" stop="21992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20979" g_stop="21692" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E261832" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20979" e_stop="21692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGT-GGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGC</genome_strand>
        <mrna_strand>TTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E333758" ref_strand="+" ref_description="SGN-E333758 	[cTOD-22-O18]">
      <seq>acgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaagcctgttttgtatgtgggtggtgggtgttcgcaatcaagtgaggagctgagacgatttgtggagcttacaggtattcctgtagcgagtactttgatgggtcttggagcttttccaactggggatgagctttcacttcaaatgttgggtatgcatggaactgtgtatgctaattatgctgtggatagtagtgatttgttgcttgcatttggggtgaggtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20706" stop="22039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21006" g_stop="21739" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E333758" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21006" e_stop="21739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATG</genome_strand>
        <mrna_strand>ACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCGCAATCAAGTGAGGAGCTGAGACGATTTGTGGAGCTTACAGGTATTCCTGTAGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAACTGGGGATGAGCTTTCACTTCAAATGTTGGGTATGCATGGAACTGTGTATGCTAATTATGCTGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E325382" ref_strand="+" ref_description="SGN-E325382 	[cTOC-1-K5]">
      <seq>acgttcgaatattattcgtaatgtgctaccacgtcatgagcaaggtggtgtgtttgctgcagagggttacgcacgggctactgggttccctggtgtttgcattgctacctctggtcccggagctacaaatcttgttagtggtcttgcggatgctttgttagatagtattccgattgttgctattacaggtcaagtgccaaggaggatgattggtactgatgcgttccaggaaacgcctattgttgaggtaacgagatctattacgaagcataattatcttgttatggatgtagaagatattcctagggttgttcgtgaagcattttttcttgcgaaatcgggacggcctggcccagttttgattgatgtacctaaggatattcagcaacaattggtgatacctaattgggatcagccaatgaggttgcctggttacatgtctaggttacctaaattgcctaatgaaatgcttttggaacaaattgttaggctgatttccgagtcgaagaaacctgttttgtatgtgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="20706" stop="21835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21006" g_stop="21535" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E325382" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21006" e_stop="21535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTG</genome_strand>
        <mrna_strand>ACGTTCGAATATTATTCGTAATGTGCTACCACGTCATGAGCAAGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGCATTGCTACCTCTGGTCCCGGAGCTACAAATCTTGTTAGTGGTCTTGCGGATGCTTTGTTAGATAGTATTCCGATTGTTGCTATTACAGGTCAAGTGCCAAGGAGGATGATTGGTACTGATGCGTTCCAGGAAACGCCTATTGTTGAGGTAACGAGATCTATTACGAAGCATAATTATCTTGTTATGGATGTAGAAGATATTCCTAGGGTTGTTCGTGAAGCATTTTTTCTTGCGAAATCGGGACGGCCTGGCCCAGTTTTGATTGATGTACCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTACCTAAATTGCCTAATGAAATGCTTTTGGAACAAATTGTTAGGCTGATTTCCGAGTCGAAGAAACCTGTTTTGTATGTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E206386" ref_strand="+" ref_description="SGN-E206386 	[cLEC-23-D12]">
      <seq>ggagctgagacgctttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaagttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21258" stop="22387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21558" g_stop="22087" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E206386" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21558" e_stop="22087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGG</genome_strand>
        <mrna_strand>GGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E378684" ref_strand="+" ref_description="SGN-E378684 	[TUS-25-F1]">
      <seq>tttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21271" stop="22752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21571" g_stop="22452" g_length="882"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="882" r_length="882" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E378684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21571" e_stop="22452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCA</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E249067" ref_strand="+" ref_description="SGN-E249067 	[cLEF-49-B9]">
      <seq>tttgtggagcttacaggtattcctgtggcgagtactgtgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaagtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaagttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21271" stop="22459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21571" g_stop="22159" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E249067" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21571" e_stop="22159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTG</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACAGGTATTCCTGTGGCGAGTACTGTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAAGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E368935" ref_strand="+" ref_description="SGN-E368935 	[TUS-25-F1]">
      <seq>tttgtggagcttacgggtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggcttgcccaacactatcaagtacaaaaaagccacgccctatgggcttacatcttgtggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21271" stop="22420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21571" g_stop="22143" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E368935" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21571" e_stop="22143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGC-TGCCCAACACTA-CAAGTAC-AAAAAGCCACG-CCAAT-GGCTTACATCTGGTGGATTA</genome_strand>
        <mrna_strand>TTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTTGCCCAACACTATCAAGTACAAAAAAGCCACGCCCTATGGGCTTACATCTTGTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E276482" ref_strand="+" ref_description="SGN-E276482 	[cLEN-17-N12]">
      <seq>gtattcctgtggcgagtactttgatgggtcttggagcttttccaagtggggatgagctttctcttcaaatgttgggtatgcatgggactgtgtatgctaattatgcggtggatagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21287" stop="22414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21587" g_stop="22114" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E276482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21587" e_stop="22114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGC</genome_strand>
        <mrna_strand>GTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E247946" ref_strand="+" ref_description="SGN-E247946 	[cLEF-47-J2]">
      <seq>tcttcaaatgttgggtatgcatgggactgtgtatgctaagtatgcggtggggagtagtgatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21348" stop="22419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21648" g_stop="22119" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E247946" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21648" e_stop="22119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGC</genome_strand>
        <mrna_strand>TCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAAGTATGCGGTGGGGAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E212805" ref_strand="+" ref_description="SGN-E212805 	[cLEC-73-I17]">
      <seq>gatttgttgcttgcatttggggtgaggtttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21406" stop="22748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21706" g_stop="22448" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E212805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21706" e_stop="22448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGC</genome_strand>
        <mrna_strand>GATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E277538" ref_strand="+" ref_description="SGN-E277538 	[cLER-6-C17]">
      <seq>tttgatgatcgagttactggtaaattggaagcttttgctagccgagctaagattgtccatattgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21433" stop="22548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21733" g_stop="22248" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E277538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21733" e_stop="22248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTG</genome_strand>
        <mrna_strand>TTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E276467" ref_strand="+" ref_description="SGN-E276467 	[cLEN-17-F16]">
      <seq>attgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21493" stop="22583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21793" g_stop="22283" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E276467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21793" e_stop="22283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCC</genome_strand>
        <mrna_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E276569" ref_strand="+" ref_description="SGN-E276569 	[cLEN-17-F15]">
      <seq>attgatattgattcggctgagattggaaagaacaagcaacctcatgtttccatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21493" stop="22557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21793" g_stop="22257" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E276569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21793" e_stop="22257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTG</genome_strand>
        <mrna_strand>ATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E253008" ref_strand="+" ref_description="SGN-E253008 	[cLEG-25-F10]">
      <seq>aaagaacaagcaacctcatgttttcatctgtgcagatatcaagttggcattacagggtttgaattccatattcgagagtaaaaaaggtaagctgaagttggacttttctgcttggaggcaggagttaacggagcagaaggtgaagtacccattgaattttaagactttcggtgaagccatccctccccaatatgctattcaggttcttgatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21519" stop="22751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21819" g_stop="22451" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E253008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21819" e_stop="22451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGC</genome_strand>
        <mrna_strand>AAAGAACAAGCAACCTCATGTTTTCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E370566" ref_strand="+" ref_description="SGN-E370566 	[TUS-27-G14]">
      <seq>ttttttttttttaagtaaacataaatattaagtttattttagataatacaatgccttgaactagttatgtagcttctcaaagtcaataggaacgtctcccatcaccctccgtaatcacatctttgaaagcaccgccactgggaatcatcggtagaacatgctcctgatgaggtacaatcacatccaacaagtatggcccaggagtgtctaacatcttttgaatggcagctctaagatcatccctgtgtgacactcttgcagcaggtacgccacaagcctctgcaaatttcagcatattagggaagatctcttcctcattagcaggattacccaagtaagtgtgtgctctgttagccttatagaatcgatcctcccactgaaccaccattcccaagtgttgattattcagcaacataatcttaactgggagattctccaccttaattgttgccaactcctgcacattcatgataaaactcccatcaccatcaatatcaaccacaatctcacccggtcttccaacagccgcacctatagcagcaggcaaaccaaatcccattgctcctaatccaccagatgtaagccattggcgtggctttttgtacttgtagtgttgggcagcccacatttggtgttgccccacaccagtactaatgatggcatttccgttagttaactcatcaagaacctgaatagcatattggggagggatggcttcaccgaaagtcttaaaattcaatgggtacttcaccttctgctccgttaactcctgcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="23000" stop="21633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22700" g_stop="21933" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="776" r_length="768" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E370566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22700" e_stop="21933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTC</genome_strand>
        <mrna_strand>TTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E552661" ref_strand="+" ref_description="SGN-E552661 	[cTSB-4-K10]">
      <seq>ctgataagttaactaacaggaaatgccatcaattaatactgagtgtggggcaacaccaaatgtggggtgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggatcaatgggatttggtttgcctgctgctataagtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaatagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcaccaattaagtatttggagctctatttagtatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21726" stop="23083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22025" g_stop="22783" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E552661" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22025" e_stop="22783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAGTTAACTAAC-GGAAATGCCATC-ATTAGTACTG-GTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAC</genome_strand>
        <mrna_strand>CTGATAAGTTAACTAACAGGAAATGCCATCAATTAATACTGAGTGTGGGGCAACACCAAATGTGGGGTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGATCAATGGGATTTGGTTTGCCTGCTGCTATAAGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAATAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E553318" ref_strand="+" ref_description="SGN-E553318 	[cTSB-4-J8]">
      <seq>agatgagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggctgatattgatggtgatgggagttttatcatgaatgtgcaagagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcaattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttccattgtgtgaaggattttagaattttcttgttctattggcagcaccaattaagtatttggagctctatttagtatgaactaagattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21727" stop="23092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22026" g_stop="22792" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E553318" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22026" e_stop="22792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTT-CATTGTGTGAAGGATTTTAGAA-TTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATG-ACTAAGATTAA</genome_strand>
        <mrna_strand>AGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGCTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAAGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCAATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCCATTGTGTGAAGGATTTTAGAATTTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGAACTAAGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E552669" ref_strand="+" ref_description="SGN-E552669 	[cTSB-4-K2]">
      <seq>tgataagttaactaacggaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatactggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggagatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggaggttcaatgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagaaatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattactgagggtgatgggagacgttcctattgactttgagaagctacataactagctcaaggcattgtattatctaaaaataaacttaatatttatgtttacgtacaagtttttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21726" stop="23010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22026" g_stop="22710" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E552669" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22026" e_stop="22710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACAT-CTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCT-AAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATT</genome_strand>
        <mrna_strand>TGATAAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATACTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGAGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGAGGTTCAATGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAAATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACTGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGCTCAAGGCATTGTATTATCTAAAAATAAACTTAATATTTATGTTTACGTACAAGTTTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E368934" ref_strand="-" ref_description="SGN-E368934 	[TUS-25-F1]">
      <seq>gaaatgccatcattagtactggtgtggggcaacaccaaatgtgggctgcccaacactacaagtacaaaaagccacgccaatggcttacatctggtggattaggagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaaaagatcttccctaatatgctgaaatttgcaaaggcttgtggcgtacctgctgcaaaagtgtcacacagggatgattttagagctgccattcaaaaaatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaaaatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatttaaaataaacttaatatttatgtttacttaaaagtttttcattgtggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21743" stop="23017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22043" g_stop="22712" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="690"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E368934" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22043" e_stop="22712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGT</genome_strand>
        <mrna_strand>GAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAAAGATCTTCCCTAATATGCTGAAATTTGCAAAGGCTTGTGGCGTACCTGCTGCAAAAGTGTCACACAGGGATGATTTTAGAGCTGCCATTCAAAAAATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAAATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATTTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E556592" ref_strand="+" ref_description="SGN-E556592 	[cTSD-3-P22]">
      <seq>gagcaatgggatttggtttgcctgctgctataggtgcggctgttggaagaccgggtgagattgtggttgatattgatggtgatgggagttttatcatgaatgtgcaggagttggcaacaattaaggtggagaatctcccagttaagattatgttgctgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcaccaattaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnaaggggggggggggggcgcccccccctccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="21845" stop="110131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22145" g_stop="22760" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22761" i_stop="23358" i_length="598">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23359" g_stop="23423" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="681" r_length="65" r_score="0.446"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23424" i_stop="24018" i_length="595">
            <donor d_prob="0.986" d_score="0.44"/>
            <acceptor a_prob="0.516" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24019" g_stop="24050" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="713" r_length="32" r_score="0.406"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E556592" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22145" e_stop="22760"/>
          <exon e_start="23359" e_stop="23423"/>
          <exon e_start="24019" e_stop="24050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGACTAAGATTAATTACAAGTGAAGTAGTTAAGTTCGATAAATCAGCTTTGTTACATTCTATGTTATTTGGTGAACATGAATTCCATTTGGGAGAAGGCTATGTCCAGCTTAAGGGCTCAAATTTTTCAGAGAGTGCTGATTCAAAAGGTGAATGCCAAAATCAGATTAGCACAAGTTTGCAGAGTTATATTACGCCATCTTTCTGTTTTCAGCTAATTGCTGTTGCAAGGGCTCTACTGAAGAAGGCCTCTATTTTATTTCTTGATGAGGTAATCTTTGACCCCTTTTGCTCCCCGTGTGTCCGTTGACTTTTACCATGTATGCTCTGCGTTACAGTTCTGTGGGTGACCTTGGTATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACACTCTACTGAAAGATGATAACCTTGAGATTTTAAGAATGCGTATTATTCATTAGCGTCTATGCACAATAGTCTAGTATACAACTATACCTGTACATGAAAGAATTATACAATCGATTGTTTTCCCTATGGAGTATATCCGCACGACAACATGTTTTTACCAGTATTTTGCTATTCTACAGTAACAGAACAATATGTGTACATGCAAGTTATGTAATGTAAAGTCAAATAGAGATCACTAATGTTTCTTCTTTCCTGCAAGAATTGGCTGAATTTGCAGCCTCCTACTGAAAG</genome_strand>
        <mrna_strand>GAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNN...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGGGGGGGGGGGCGCCCCCCCCTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E242530" ref_strand="+" ref_description="SGN-E242530 	[cLED-30-O2]">
      <seq>tgaataatcaacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttctattggcagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22001" stop="23050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22301" g_stop="22750" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E242530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22301" e_stop="22750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCAC</genome_strand>
        <mrna_strand>TGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E309823" ref_strand="+" ref_description="SGN-E309823 	[cLEZ-10-O21]">
      <seq>aacacttgggaatggtggttcagtgggaggatcgattctataaggctaacagagcacacacttacttgggtaatcctgctgatgaggaagagatcttccctaatatgctgaaatctgtagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttatagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagcggcggcgctttcaaagatgtgattacggacggtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22010" stop="22909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22310" g_stop="22609" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E309823" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22310" e_stop="22609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATG</genome_strand>
        <mrna_strand>AACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTGATGAGGAAGAGATCTTCCCTAATATGCTGAAATCTGTAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTATAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGCGGCGGCGCTTTCAAAGATGTGATTACGGACGGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E219360" ref_strand="-" ref_description="SGN-E219360 	[cLEL-11-D14]">
      <seq>ttctataaggctaacagagcacacacttacttgggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgatttcggagggtgatgggaaacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggaaaaaaaaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22045" stop="23020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22345" g_stop="22719" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="398"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E219360" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219360" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22345" e_stop="22719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</genome_strand>
        <mrna_strand>TTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTTCGGAGGGTGATGGGAAACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E217334" ref_strand="+" ref_description="SGN-E217334 	[cLEL-21-L18]">
      <seq>ttttttttttttttttttttttttccttcacacaatgaaaaacttttaagtaaacataaatattaagtttattttagataatacaatgccttgaactagttatgtagcttctcaaagtcaataggaacgtctcccatcaccctccgtaatcacatttttgaaagcaccgccactgggaatcatcggtagaacatgctcctgatgaggtacaatcacatccaacaggtatggcccaggagtgtctaacatcttttgaatggcagctctaagatcatccctgtgtgacactcttgcagcaggtacgccacaggcctctgcaaatttcagcatattagggaagatctcttcctcattagcaggattacccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="110131" stop="22073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22947" g_stop="22936" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22935" i_stop="22732" i_length="204">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22731" g_stop="22373" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="371" r_length="359" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E217334" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22947" e_stop="22936"/>
          <exon e_start="22731" e_stop="22373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGATTTTGGCATTCACCTTTTGAATCAGCACTCTCTGAAAAATTTGAGCCCTTAAGCTGGACATAGCCTTCTCCCAAATGGAATTCATGTTCACCAAATAACATAGAATGTAACAAAGCTGATTTATCGAACTTAACTACTTCACTTGTAATTAATCTTAGTCATACTAAATAGAGCTCCAAATACTTAATTGGTGCTGCCAATAGAACAAGAAATTCTAAAATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTT............................................................................................................................................................................................................TTTTTTTTTTTTCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATTTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAGGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAGGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E221895" ref_strand="-" ref_description="SGN-E221895 	[cLEL-10-A4]">
      <seq>cttgggtaatcctgctaatgaggaagagatcttccctanatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22074" stop="23040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22374" g_stop="22739" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="383"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E221895" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221895" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22374" e_stop="22739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTA-ATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCT</genome_strand>
        <mrna_strand>CTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTANATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E221497" ref_strand="-" ref_description="SGN-E221497 	[cLEL-10-A4]">
      <seq>ggtaatcctgctaatgaggaagagatcttccctaatatgctgaaatttgcagaggcttgtggcgtacctgctgcaagagtgtcacacagggatgatcttagagctgccattcaaaagatgttagacactcctgggccatacttgttggatgtgattgtacctcatcaggagcatgttctaccgatgattcccagtggcggtgctttcaaagatgtgattacggagggtgatgggagacgttcctattgactttgagaagctacataactagttcaaggcattgtattatctaaaataaacttaatatttatgtttacttaaaagtttttcattgtgtgaaggattttagaatttcttgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22078" stop="23040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22378" g_stop="22739" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E221497" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221497" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22378" e_stop="22739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCT</genome_strand>
        <mrna_strand>GGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E221664" ref_strand="+" ref_description="SGN-E221664 	[cLEL-10-A10]">
      <seq>tttttttttttttttttttttttttccttcacacaatgaaaaacttttaagtaaacataaatattaagtttattttagataatacaatgccttgaactagttatgtagcttctcaaagtcaataggaacgtctcccatcaccctccgtaatcacatttttgaaagcaccgccactgggaatcatcggtagaacatgctcctgatgaggtacaatcacatccaacaagtatggcccaggagtgtctaacatcttttgaatggcagctctaagatcatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="110131" stop="22165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22948" g_stop="22936" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22935" i_stop="22732" i_length="204">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22731" g_stop="22465" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="280" r_length="267" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E221664" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22948" e_stop="22936"/>
          <exon e_start="22731" e_stop="22465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTGATTTTGGCATTCACCTTTTGAATCAGCACTCTCTGAAAAATTTGAGCCCTTAAGCTGGACATAGCCTTCTCCCAAATGGAATTCATGTTCACCAAATAACATAGAATGTAACAAAGCTGATTTATCGAACTTAACTACTTCACTTGTAATTAATCTTAGTCATACTAAATAGAGCTCCAAATACTTAATTGGTGCTGCCAATAGAACAAGAAATTCTAAAATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTT............................................................................................................................................................................................................TTTTTTTTTTTTCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATTTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E221731" ref_strand="+" ref_description="SGN-E221731 	[cLEL-10-A10]">
      <seq>tttttttttttttttttttttttttccttcacacaatgaaaaacttttaagtaaacataaatattaagtttattttagataatacaatgccttgaactagttatgtagcttctcaaagtcaataggaacgtctcccatcaccctccgtaatcacatctttgaaagcaccgccactgggaatcatcggtagaacatgctcctgatgaggtacaatcacatccaacaagtatggcccaggagtgtctaacatcttttgaatggcagctctaagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="110131" stop="22169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22948" g_stop="22936" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.538"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22935" i_stop="22732" i_length="204">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22731" g_stop="22469" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="276" r_length="263" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E221731" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22948" e_stop="22936"/>
          <exon e_start="22731" e_stop="22469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTGATTTTGGCATTCACCTTTTGAATCAGCACTCTCTGAAAAATTTGAGCCCTTAAGCTGGACATAGCCTTCTCCCAAATGGAATTCATGTTCACCAAATAACATAGAATGTAACAAAGCTGATTTATCGAACTTAACTACTTCACTTGTAATTAATCTTAGTCATACTAAATAGAGCTCCAAATACTTAATTGGTGCTGCCAATAGAACAAGAAATTCTAAAATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTT............................................................................................................................................................................................................TTTTTTTTTTTTCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E350252" ref_strand="+" ref_description="SGN-E350252 	[cTOS-4-L5]">
      <seq>tatcttcttattcactgtaaatgttggtttaagcctgaattacctaggggattccccaggtcgtttacacaggggtttacataagatcagctcagttctccggagaagttctagcaatcttggagagcctatttcatctctgcatgtgaatcttagggcagttaatgccaaggatatcagagtgaagattatagtggatgacaccattttgccttcatcattagcaacaacacctacagaagatggaaaagagaacggtgcaggaaatgggaaaagtttcacaaatggggcaagacgaagagaatccttaaagatgctggcaaatctgttggtggtggcataaaggaagtgatgtctgggaagtcatcagggaaatctaaagaggaagtagaatcatcagagaccgaaagaatgagctctgtggaatctgatatttctgatgcagagtctcaaccttcatcagttgattcacctccagttgtagcgccttctgttgacnacagttccacagccagctccggtattgagacttctctcttgatggagaattgtgatatacgcgatgtaatataaaacatatttggtgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22835" stop="24025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23135" g_stop="23727" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E350252" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23135" e_stop="23727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACT</genome_strand>
        <mrna_strand>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACNACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGGAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E353861" ref_strand="+" ref_description="SGN-E353861 	[cTOS-10-N10]">
      <seq>gagagcctatttcatctctgcatgtgaatcttagggcagttaatgccaaggatatcagagtgaagattatagtggatgacaccattttgccttcatcattagcaacaacacctacagaagatggaaaagagaacggtgcaggaaatgggaaaagtttcacaaatggggcaagacgaagagaatccttaaagatgctggcaaatctgttggtggtggcataaaggaagtgatgtctgggaagtcatcagggaaatctaaagaggaagtagaatcatcagagaccgaaagaatgagctctgtggaatctgatatttctgatgcagagtctcaaccttcatcagttgattcacctccagttgtagcgccttctgttgacaacagttccacagccagctccggtattgagacttctctcttgatgtagaattgtgatatacgcgatgtaatataaaacatatttggtgttacacttggacgaacttatttttcagttttgaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="22957" stop="24059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23257" g_stop="23759" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E353861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23257" e_stop="23759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</genome_strand>
        <mrna_strand>GAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E202109" ref_strand="+" ref_description="SGN-E202109 	[cLEC-7-K5]">
      <seq>tggtattaagtggtctacaaagagcactactagttgaggcaaaactacaaaacataaagtcactggaaacagctctagcttctcaatcatttatccagcttggacttttaacagggttaccaatggtcattgagttgggactagagcgcggctatcttaatgctcttaaagattttgttctgatgcaactgcagctggctgcagtattctttactttctcctatggaacaaagtctcattactatggcagaacaattcttcatggaggtgctaagtatagacctactggtcgtaaagatgaggcttttcatgccagcttcactgaaaactatagactttactctcggagtcacttcgtcaaaggatttgaacttctactcctgttgatagcatatgatttgggtagacgatcgtatgagagcaatttggcctatgttttaactacatatgcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="25745" stop="24690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25445" g_stop="24990" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E202109" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25445" e_stop="24990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</genome_strand>
        <mrna_strand>TGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGCTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTATTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGATGAGGCTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATAGCATATGATTTGGGTAGACGATCGTATGAGAGCAATTTGGCCTATGTTTTAACTACATATGCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E257743" ref_strand="+" ref_description="SGN-E257743 	[cLEG-39-B22]">
      <seq>ttcaacagcctgatatcagtggttacgatttatgtgtttctatacggtcagctctacatggtattaagtggtctacaaagagcactactagttgaggcaaaactacaaaacataaagtcactggaaacagctctagcttctcaatcatttatccagcttggacttttaacagggttaccaatggtcattgagttgggactagagcgcggttatcttaatgctcttaaagattttgttctgatgcaactgcagctggctgcagttttctttactttctcctatggaacaaagtctcattactatggcagaacaattcttcatggaggtgctaagtatagacctactggtcgtaaagttgtggtttttcatgccagcttcactgaaaactatagactttactctcggagtcacttcgtcaaaggatttgaacttctactcctgttgattgtttatgatttgtttagacgatcgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="25801" stop="24729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25578" g_stop="25567" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25566" i_stop="25492" i_length="75">
            <donor d_prob="0.954" d_score="0.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25491" g_stop="25029" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="475" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E257743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25578" e_stop="25567"/>
          <exon e_start="25491" e_stop="25029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACAGCCTGGTAACTACATTAAATCCTGTAACTAATATGCTGGTTTATATGTCTCTTTTAATCTCTGCTGTCAAAACTATGCAGATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATG</genome_strand>
        <mrna_strand>TTCAACAGCCTG...........................................................................ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E374544" ref_strand="-" ref_description="SGN-E374544 	[TUS-38-P16]">
      <seq>taagtttgaaaaaccgaagattaaggagttcattgatttgatgagaagatggggattggacccaaaaaagaaatctttgtttttgatgacggaagtttcagacaatgtgattttttccagcaaaaacattagcacattgaaaatgttgacacccagaactttgaatcttttcgacatattggattttgaaaagctggttttcactaaatcagctgtggagtttttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaaaaaaaaaatggtggcgaggtggaggaaagtgctgaaagttttgagtaatatatgaacatggggcgaaaagggtttgttccattttaaaggaggctttcccttacagggagcttagtatatttccctttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtccctgactgcatttgtccattaccttcgttggaatagtttacttttgattttcgttccgctttcattgcccctttgagtttttgatttttatgataagagtgattagtttacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62474" stop="47510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62174" g_stop="61879" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61526" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="576" r_length="280" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61525" i_stop="60991" i_length="535">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.412" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60990" g_stop="60950" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="617" r_length="41" r_score="0.659"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E374544" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374544" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62174" e_stop="61879"/>
          <exon e_start="61805" e_stop="61526"/>
          <exon e_start="60990" e_stop="60950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAAT</genome_strand>
        <mrna_strand>TAAGTTTGAAAAACCGAAGATTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAAAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTTTTTCCAGCAAAAACATTAGCACATTGAAAATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTTTGAAAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTTTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAAAAAAAAATG.........................................................................GTGGCGAGGTGGAGGAAAGTGCTGAAAGTTTTGAGTAATATATGAACATGGGGCGAAAAGGGTTTGTTCCATTTTAAAGGAGGCTTTCCCTTACAGGGAGCTTAGTATATTTCCCTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCCCTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTTTTGATTTTCGTTCCGCTTTCATTGCCCCTTTGAGTTTTTGATTTTTATGATAAGAGTGATTAGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E219590" ref_strand="-" ref_description="SGN-E219590 	[cLEL-11-N11]">
      <seq>agtttgatgataagtttgagaaaccgaagactaaggagttcattgatttcataagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcaggggtcattagcacattgtcgatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtgtagcaaagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgatattggttcatttcatgtcactgcctgcatttgtccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62484" stop="47519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62184" g_stop="61879" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61616" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="497" r_length="190" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61615" i_stop="60969" i_length="647">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60968" g_stop="60951" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="515" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E219590" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62184" e_stop="61879"/>
          <exon e_start="61805" e_stop="61616"/>
          <exon e_start="60968" e_stop="60951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCA-GAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAA</genome_strand>
        <mrna_strand>AGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTCATAAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGGGGTCATTAGCACATTGTCGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGTAGCAAAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATATTGGTTCATTTCATGTCACTGCCTGCATTTGTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E219329" ref_strand="-" ref_description="SGN-E219329 	[cLEL-11-N12]">
      <seq>aatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcattcgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62403" stop="47525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62103" g_stop="61879" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61622" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="409" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61621" i_stop="60991" i_length="631">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60990" g_stop="60967" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="433" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E219329" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219329" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62103" e_stop="61879"/>
          <exon e_start="61805" e_stop="61622"/>
          <exon e_start="60990" e_stop="60967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>AATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216226" ref_strand="-" ref_description="SGN-E216226 	[cLEL-13-G23]">
      <seq>atctttgtttttgtgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62402" stop="47525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62102" g_stop="61879" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61622" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="407" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61621" i_stop="60991" i_length="631">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60990" g_stop="60967" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="431" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E216226" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216226" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62102" e_stop="61879"/>
          <exon e_start="61805" e_stop="61622"/>
          <exon e_start="60990" e_stop="60967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>ATCTTTGTTTTTG-TGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E216114" ref_strand="-" ref_description="SGN-E216114 	[cLEL-13-G23]">
      <seq>ctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctaagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaaaaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62400" stop="47525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62100" g_stop="61879" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61622" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="406" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61621" i_stop="60991" i_length="631">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.412" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60990" g_stop="60967" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="430" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E216114" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62100" e_stop="61879"/>
          <exon e_start="61805" e_stop="61622"/>
          <exon e_start="60990" e_stop="60967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTTACTAATTAATTCTTGTGTTCTGGCAAAACTACATTAATTGCTTAGTAGATGAAGCTTTATATAAGATTTATGGGTTACAAGTTGTCAGCCAGGCGAGATTCAGCAAAGTAAAATGATTAGGAAAGCTTTGTGTTTGAGTCTTAGGCTTGAAGCAATTAAGCAAAGTTAAGAAAAGGAAACCTTTATTTGGGTGGAAAAAGCTTCATCACCTTTTTCTTTAATACAAACACAAAGTAATTGGCAGGAAAAAATGCTCTTTACTTTGTTTTGAGTCATTGGGGGCATATGGGATGCTAAGCATTATTAACCTTGAAACAGACCATATCTAGTAGACTATCTATGGAGGCAGATAACTTGGACATTTGTACTATCAAAATATGTGATGGAGAGTATATGAGTATCTCTAGGCTTTTACTAGAACTTTTGAGTTTAAGCGCTAATTGCTACTCTGCTTTTAGCCTCAAAATAGTTTGAGAATGAATCAATGGATTGCACAAACTATCTCATTGATCAATTTTACATATTTCAAAGCCAGGCTGTTTAAAAAGCAAAAGAAGAA</genome_strand>
        <mrna_strand>CTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTAAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAAAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E288558" ref_strand="-" ref_description="SGN-E288558 	[cLES-8-I22]">
      <seq>tgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaccttcgttggaatagtttactcttgattttcgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62397" stop="61279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62097" g_stop="61879" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61578" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="447" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E288558" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288558" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62097" e_stop="61879"/>
          <exon e_start="61805" e_stop="61578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCC</genome_strand>
        <mrna_strand>TGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E350753" ref_strand="+" ref_description="SGN-E350753 	[cTOS-7-L1]">
      <seq>gtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgatttcatgtcactgactgcatttgtccattaccttcgttggaatagtttactcttgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62483" stop="61285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62183" g_stop="61879" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61585" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="526" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E350753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62183" e_stop="61879"/>
          <exon e_start="61805" e_stop="61585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTT</genome_strand>
        <mrna_strand>GTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E234254" ref_strand="-" ref_description="SGN-E234254 	[cLEL-8-B4]">
      <seq>ttttaatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttaaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtgattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62394" stop="61344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62094" g_stop="61879" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61638" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="384" r_length="168" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E234254" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234254" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62094" e_stop="61879"/>
          <exon e_start="61805" e_stop="61638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>TTTTAATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTAAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E220143" ref_strand="-" ref_description="SGN-E220143 	[cLEL-12-O5]">
      <seq>tttgatgacggaagtttcagacaatgtgattctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggtaattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62393" stop="61344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62093" g_stop="61879" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61638" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="383" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E220143" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220143" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62093" e_stop="61879"/>
          <exon e_start="61805" e_stop="61638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>TTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTAATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E233999" ref_strand="-" ref_description="SGN-E233999 	[cLEL-8-B4]">
      <seq>ctctccagcagaaacattagcacattgaagatgttgacacccagaactttgaatcttttcgacatattggattctgagaagctggttttcactaaatcagctgtggagttcttgaatgaacgatacggaaatgatgatgatgatgatgatgactgggaggtggtggacgaggaagaagaagatggtggcgaggtggaggagagtgctgaaagttctgagtaatatatgaacatggggcgaaaagggtctgttccattttagaggaggctttaccttacagggagcttagtatatttcactttgaattgtattttattgtatgataaaactaggaaattttggttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62362" stop="61344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62062" g_stop="61879" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61805" g_stop="61638" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="352" r_length="168" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E233999" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233999" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62062" e_stop="61879"/>
          <exon e_start="61805" e_stop="61638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATGGTTAGTTTTTGCTTCATTTTGGGTATGAAGTTTCCTTTCAATTTTAGCTAACTCGTTAATTTGCTGCATTCAGGTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCAT</genome_strand>
        <mrna_strand>CTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG.........................................................................GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGAAATTTTGGTTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E374545" ref_strand="+" ref_description="SGN-E374545 	[TUS-38-P16]">
      <seq>ccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatgagaagatggggattggacccaaaagagaaatctttgtttttgatgacggaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63041" stop="61776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62741" g_stop="62076" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E374545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62741" e_stop="62076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTC</genome_strand>
        <mrna_strand>CCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E340579" ref_strand="+" ref_description="SGN-E340579 	[cTOF-1-G7]">
      <seq>ccaatccataggcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctacacagaatgccattgttgtggaagagtttgatgataagtttgagaaaccgaagactaaggagttcattgatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63046" stop="61831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62746" g_stop="62131" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E340579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62746" e_stop="62131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGA</genome_strand>
        <mrna_strand>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E283845" ref_strand="+" ref_description="SGN-E283845 	[cLER-13-A15]">
      <seq>tctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagtttagattaacaaaaaggaaaagagactcgcgatttctactgcgctttcgagtgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62959" stop="61907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62659" g_stop="62207" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E283845" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62659" e_stop="62207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACA</genome_strand>
        <mrna_strand>TCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTTAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E300627" ref_strand="+" ref_description="SGN-E300627 	[cLET-45-H9]">
      <seq>gttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggtgtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccagctggagaggttgtgtttgggccgaaacctaaggattggtcagttaagattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63033" stop="61950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62734" g_stop="62248" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E300627" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62734" e_stop="62248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGG</genome_strand>
        <mrna_strand>GTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGTGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGCTGGAGAGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E374269" ref_strand="+" ref_description="SGN-E374269 	[TUS-33-D16]">
      <seq>tgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttccaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcgacgtgggtcgaaccgaactcctttacgaccaggtggtggggttgtgtttgggccgaaacctaaggattggtcagttaagattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63032" stop="61950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62732" g_stop="62248" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E374269" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62732" e_stop="62248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGG</genome_strand>
        <mrna_strand>TGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E374268" ref_strand="+" ref_description="SGN-E374268 	[TUS-33-D16]">
      <seq>tttttttttaatcttaactgaccaatccttaggtttcggcccaaacacaaccccaccacctggtcgtaaaggagttcggttcgacccacgtcgagctcgacccgttttcttttgtgggtatggtttgataccaccaccccgtacttgggctcgggtaagggtggaagcagtaccgcgacgttggttgcgcaggtcagtggtaagcccacgatgaacgacggcgcgtgcggtatcaagaggggcggattttaagttgagagtggtggagcccacttcggtaccatcaaaggacagaattggaatagtggcggcggcggcctctgaacggatggagaattgttgttgtttgggtttgaaaatgagttgtttctgctgctgctgctttgaggagtgaagggtgttggagttagagaagaaaatggtggaagaaaagaaagataaagaagaagaagtagccatttttgcagtgaaggagcaaactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="61950" stop="63033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62249" g_stop="62733" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E374268" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62249" e_stop="62733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGTTAATCTTAACTGACCAATCCTTAGGTTTCGGCCCAAACACAACCCCACCACCTGGTCGTAAAGGAGTTCGGTTCGACCCACGTCGAGCTCGACCCGTTTTCTTTTGTGGGTATGGTTTGATACCACCACCCCGTACTTGGGCTCGGGTAAGGGTGGAAGCAGTACCGCGACGTTGGTTGCGCAGGTCAGTGGTAAGCCCACGATGAACGACGGCGCGTGCGGTATCAAGAGGGGCGGATTTTAAGTTGAGAGTGGTGGAGCCCACTTCGGTACCATCAAAGGACAGAATTGGAATAGTGGCGGCGGCGGCCTCTGAACGGATGGAGAATTGTTGTTGTTTGGGTTTGAAAATGAGTTGTTTCTGCTGCTGCTGCTTTGAGGAGTGAAGGGTGTTGGAGTTAGAGAAGAAAATGGTGGAAGAAAAGAAAGATAAAGAAGAAGAAGTAGCCATTTTTGCAGTGAAGGAGCAAACTGCAA</genome_strand>
        <mrna_strand>TTTTTTTTTAATCTTAACTGACCAATCCTTAGGTTTCGGCCCAAACACAACCCCACCACCTGGTCGTAAAGGAGTTCGGTTCGACCCACGTCGAGCTCGACCCGTTTTCTTTTGTGGGTATGGTTTGATACCACCACCCCGTACTTGGGCTCGGGTAAGGGTGGAAGCAGTACCGCGACGTTGGTTGCGCAGGTCAGTGGTAAGCCCACGATGAACGACGGCGCGTGCGGTATCAAGAGGGGCGGATTTTAAGTTGAGAGTGGTGGAGCCCACTTCGGTACCATCAAAGGACAGAATTGGAATAGTGGCGGCGGCGGCCTCTGAACGGATGGAGAATTGTTGTTGTTTGGGTTTGAAAATGAGTTGTTTCTGCTGCTGCTGCTTTGAGGAGTGAAGGGTGTTGGAGTTAGAGAAGAAAATGGTGGAAGAAAAGAAAGATAAAGAAGAAGAAGTAGCCATTTTTGCAGTGAAGGAGCAAACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E298333" ref_strand="+" ref_description="SGN-E298333 	[cLET-41-K12]">
      <seq>cactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="62855" stop="62039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62555" g_stop="62339" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E298333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62555" e_stop="62339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGA</genome_strand>
        <mrna_strand>CACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E298942" ref_strand="+" ref_description="SGN-E298942 	[cLET-42-C4]">
      <seq>gcttgcagtttgctccttcactgcaaaaatggctacttcttcttctttatctttcttttcttgcaccattttcttctctaactccaacacccttcactcctcaaagcagcagcagcagaaacaactcattttcaaacccaaacaacaacaattctccatccgttcagaggccgccgccgccactattccaattctgtcctttgatggtaccgaagtgggctccaccactctcaacttaaaatccgcccctcttgataccgcacgcgccgtcgttcatcgtgggcttaccactgacctgcgcaaccaacgtcgcggtactgcttccacccttacccgagcccaagtacggggtggtggtatcaaaccatacccacaaaagaaaacgggtcgagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="63035" stop="62040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62735" g_stop="62340" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E298942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62735" e_stop="62340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCG</genome_strand>
        <mrna_strand>GCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTGCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E545328" ref_strand="+" ref_description="SGN-E545328 	[TUS-68-B23]">
      <seq>tgggaccgggcccccctcgagttttttttttttttttttgtttttttttagtaaaaagaattatactaatatgggatttacaattgccatgaaaaacgtgttaatcaatactcctatctcaatgactatctataagtactccttcatccttaattagagatttcagatttgaatctttcagagtacaaagtcacctttacgaggaaacaatgaatccctcaatactaatgcgaatccagattagttgagctccaatatgaatatcagacatcaggtgcataaagcatagattcacaagattcttcccaagaaaactccctacatgcgccaacaaagttagtgaaatcttcaactccattttgatcatagtaacaatccttgaaccaaatattcatatcatcatcatcactaggagttgaagaatccatgtctgaatcaatccaacaatattcaagttcaccaagatcatcacaagacaaattagttgaattctctactttcatttgctcaaacaaaattgaatcatttgtattaacactaggaacaatattctctacttctaatgactcaatcacacttcttaataactcttcatcacttgcctcaaattctggttcttcaagaaatgacatgaaaacatcgttctcaatattgctaagtgcaagattttcattattacaatatgtggccattgacatgttgaatatgagataaaagagaagttgaaaaattgaaagatttttttggagaagattagctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="47517" stop="65055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63688" g_stop="63733" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.478"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63734" i_stop="64033" i_length="300">
            <donor d_prob="0.833" d_score="0.48"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64034" g_stop="64755" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="764" r_length="721" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E545328" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63688" e_stop="63733"/>
          <exon e_start="64034" e_stop="64755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACTCAACGCCCCTTTGCACGTTCATGGTCAGATATCATGAATGTAAGCAATATAAAATGGAGACCTAATATTAAATGATAATAAAGTGAGATGGACGTAACTTCAATACCATATTAAATTTAACTCAATTCAAAAGATAAATCGAGGAGATATGATTGTTCAAGAGTATATAAAGAAATCAATTTCTCCTCGTTCCACTTATGTTGAAACTTAACAAACTCAATTAAATTTTGAACTAATAATTTCAAATGTACCATAAAATTAGGTTCTGCAGCTTACATCCTAAAATTAGGTAAGCTATGCTTATTCCACATTGAATTAAAAGCAACAGAAAGTTCATAGGTCTTTAGTAAAAAGAATTTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</genome_strand>
        <mrna_strand>TGGGAC-C-GGGCCCCCCT-CGAGTTTTTTTTTTTTTTTTTTGTTT............................................................................................................................................................................................................................................................................................................TTTTTTAGTAAAAAGAA-TTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E545329" ref_strand="+" ref_description="SGN-E545329 	[TUS-68-B23]">
      <seq>attaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctggattcgcattagtattgagggattcattgtttcctcgtaaaggtgactttgtactctgaaagattcaaatctgaaatctctaattaaggatgaaggagtacttatagatagtcattgagataggagtattgattaacacgtttttcatggcaattgtaaatcccatattagtataaattctttttactaaaaaaaaaccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65055" stop="63735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64755" g_stop="64037" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E545329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64755" e_stop="64037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</genome_strand>
        <mrna_strand>ATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E309791" ref_strand="+" ref_description="SGN-E309791 	[cLEZ-10-C9]">
      <seq>ttaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctggattcgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65054" stop="63918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64754" g_stop="64218" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E309791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64754" e_stop="64218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATT</genome_strand>
        <mrna_strand>TTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E228444" ref_strand="+" ref_description="SGN-E228444 	[cLED-3-I17]">
      <seq>tttttttcctctaattttttgttatcaattaaagctaatcttctccaaaaaaatctttcaatttttcaacttctcttttatctcatattcaacatgtcaatggccacatattgtaataatgaaaatcttgcacttagcaatattgagaacgatgttttcatgtcatttcttgaagaaccagaatttgaggcaagtgatgaagagttattaagaagtgtgattgagtcattagaagtagagaatattgttcctagtgttaatacaaatgattcaattttgtttgagcaaatgaaagtagagaattcaactaatttgtcttgtgatgatcttggtgaacttgaatattgttggattgattcagacatggattcttcaactcctagtgatgatgatgatatgaatatttggttcaaggattgttactatgatcaaaatggagttgaagatttcactaactttgttggcgcatgtagggagttttcttgggaagaatcttgtgaatctatgctttatgcacctgatgtctgatattcatattggagctcaactaatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="65082" stop="63926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64782" g_stop="64226" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E228444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64782" e_stop="64226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGA</genome_strand>
        <mrna_strand>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E539578" ref_strand="-" ref_description="SGN-E539578 	[TUS-59-G15]">
      <seq>caaaaatttcaactatttttagttgataactccaaatttcaattctgagtgaaggaggcaaggacagtcattatcaccaccatggccaccantatgaccaccccccacccccccctatggcaccaccattcccccccagagaagacccaaccaccccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaatcaggattcgttgcatgcaccattgctgctgttctcgctgtaattggtaatatcgtatttgggttgacatggatattattaacagcataatggtgatcaacttctgtggagtattcgtgttctagctagtttgcttgattaatgcacattttattcagaacatttctgtaaaacaaaagttacatgttataattaaataaataattatatgtgcttcctgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="80457" stop="76215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80157" g_stop="79846" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79076" g_stop="79011" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="380" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77650" g_stop="77578" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="453" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77108" g_stop="76991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="571" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76990" i_stop="76724" i_length="267">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76723" g_stop="76513" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="782" r_length="211" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E539578" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80157" e_stop="79846"/>
          <exon e_start="79076" e_stop="79011"/>
          <exon e_start="77650" e_stop="77578"/>
          <exon e_start="77108" e_stop="76991"/>
          <exon e_start="76723" e_stop="76513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCA-CCACCA-CCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCA-CCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCTGTAAGTGATCTCTTTCGTTCTTTTTGTGTGATGTTCTCAACTGCATGAGAACGAAAAACTAAGTGTGTTTTCACATTTGATTCGAGATTGACATAAGAATTTTGTTAATGAAATGGCACTCAACTAGTATAGCGCGATAGACATATCATTAATGACCTGTCACGTCTAATATGATGAACTATTTCTAGATGTAACGCGATATACAACTCTTATTGTGTATGTTCTTCGTAGCTTAATGGCTCCGTCAAACTCTGTTGCATGTTGCAGGCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</genome_strand>
        <mrna_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTCTGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCANTATGACCACCCCCCACCCCCCCCTATGG-CACCACCATTCCCCCCCAGAGAAGACCCAACCACCCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT...........................................................................................................................................................................................................................................................................GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E548244" ref_strand="+" ref_description="SGN-E548244 	[TUS-59-G15]">
      <seq>caaaaatttcaactatttttagttgataactccaaatttcaattatgagtgaaggaggcaaggacagtcattatcaccaccatggccaccactatgaccaccaccaccaccactatggacaccaccatcaccaccaagagaagacccaaccacccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaatcaggattcgttgcatgcaccattgctgctgttctcgctgtaattggtaatatcgtatttgggttgacatggatattattaacagcataatggtgatcaacttctgtggagtattcgtgttctagctagtttgcttgattaatgcacattttattcagaacatttctgtaaaacaaaagtacatgttataattaaataaataattatatgtgcttcctgtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="80457" stop="76215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80157" g_stop="79846" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79076" g_stop="79011" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="378" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77650" g_stop="77578" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="451" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77108" g_stop="76991" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="569" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76990" i_stop="76724" i_length="267">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76723" g_stop="76514" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="778" r_length="209" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E548244" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80157" e_stop="79846"/>
          <exon e_start="79076" e_stop="79011"/>
          <exon e_start="77650" e_stop="77578"/>
          <exon e_start="77108" e_stop="76991"/>
          <exon e_start="76723" e_stop="76514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCTGTAAGTGATCTCTTTCGTTCTTTTTGTGTGATGTTCTCAACTGCATGAGAACGAAAAACTAAGTGTGTTTTCACATTTGATTCGAGATTGACATAAGAATTTTGTTAATGAAATGGCACTCAACTAGTATAGCGCGATAGACATATCATTAATGACCTGTCACGTCTAATATGATGAACTATTTCTAGATGTAACGCGATATACAACTCTTATTGTGTATGTTCTTCGTAGCTTAATGGCTCCGTCAAACTCTGTTGCATGTTGCAGGCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAAT</genome_strand>
        <mrna_strand>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT...........................................................................................................................................................................................................................................................................GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAG-TACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E285129" ref_strand="+" ref_description="SGN-E285129 	[cLER-20-A20]">
      <seq>aaaaatttcaactatttttagttgataactccaaatttcaattatgagtgaaggaggcaaggacagtcattatcaccaccatggccaccactatgaccaccaccaccaccactatggacaccaccatcaccaccaagagaagacccaaccacccccaccatggctaccaacagcaccaccagaagtagctgaatatggtacttttcaaccacctcctcaaccagtaattggttttcctctgccagttcctccacctggatcagtacttgaaccttctgaatactatgctcgtggctatcattctgttccagttcctccacctggagcagtacttgaaccttctgaatactatgctcgtggctatcagtccgttccaggttatgtgattgatgagaggagacctgtaacagagccccgccttcctttcggtattggtcttggctggttcttgttcattattggtttctttcttgctggcttcccttggtatgttgctgcatttatcccgctttgcaacagatcaattgatcatcgagagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="80456" stop="76717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80156" g_stop="79846" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79076" g_stop="79011" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="377" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77650" g_stop="77578" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="450" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77108" g_stop="77017" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="542" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E285129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80156" e_stop="79846"/>
          <exon e_start="79076" e_stop="79011"/>
          <exon e_start="77650" e_stop="77578"/>
          <exon e_start="77108" e_stop="77017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAGGTAACCCATTTTGTTCTCATTTAAGAATTCATTATGTATAGCTAGATTGATTAATTTTCTTGAAATGATTCAACTTATTTGATTTTGGGTGAAAAGTTTGCGGCTTTTTGCAATATTTAGTTGAAAATCGGAACTGGATGTGGTCACCTTTCTGATCTAACACCACAGGGGTTACCTGGAACAGACTGATTTATAGGGCATCCAGAAAATGCTAGTCATCATTAGCTCATTGGCTTGCTATCTGATAGTTTTCTCCAGGCTAAGAAATTCGATGACTCATCTTAGGGCTTTTCTTTTTGTTCCCCTTTGTAATGCAATCGGAAAGAGACCAGAACTAAGTGAAAAAAGGTTTCATAAGCAAACATTATTGTGGAAATCAAGGGACAGTGCTGTTTTAGAAAAGATGCAATAGTTTCCGATTCCCCCGAGCTTAGGGGTCAATTACGGGGGGTAATGGGCGTTCAACTCATTTTTTGTGTCTCTTGCAATATTAAGTTGTGTTATGGTGAAATGTTGGTGTTCTTTTTGCAATATTAAGTTGTTATGGTGAAAAGTTTGCGTCTTTTTGCAACATTCACTTGAATTAGGTTGAGAAGTTTGTGTCTTACTCTTTTATATCATTCAGTTGAATTATGTTGAGAAGTTTGTGTCTTTTGCAACATTCAGTAGATTTGTGTTGGAAAGTTTTGTGTCTTTTGCAACATCCAGTTGTATTGTGTTGAAAAGTTTGTATCTTGTCAACCACCTCCTCACGATTTTCCTCTGCCAGTTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAGGTAACCCCTTTTGTTCTCATCTCAGAATTCATTCTGGATTGATTAATTTTCTTAAAATGATTCAATTATTTGATTTTGGCTGAAAAGTTTGTGCCTTTTGCAATATTTAGTTGATTTGTATTTAGAAGTTTGTGTCTTTTGCAATATTAAGTTGAGTTGTGGTGAGAAGTTTGTGTTTTTTGCAATATTAAGTTGAGTTATGGTAAGAAATTTGTGTTTTTGCAATATTAAGTTAAGTTATGGTAAAAAGTTTGTGTCTTTTGCAATATTCAGTTGAATTATGTTGAAAAGTTTGTGCCTTTTGCATCATTCAGTTGAGTTATGTCGAAAAGTTTGTCTTTTGTATCATTCAGTTAAATTATGTTGAAAAGTTCGTGTCTTTTGCAACACTCAGTAGAATTGTGATGAAAAGTTTAGAGTCTTTGCAACATCCAGTTATATTGTGTTGAAAGTTTGTGTCTTTTACAACATTCAGTTGATTTGTGTTGCACAGTTTTTGTCTTTTTTAACATTCAGTTGAATTATGTCAAGAAGTTTGTGTCTTTTGCAACATTCAGTTGAATTGTTTTGAAAAGTTTGTGTCTTTTGTAACATTCAGAAGAATTGTGTCAAAAAGTTTGTGCCTTTTGCAACATTCTTGTTAATTATGTTGCAAAGCTTGTCTCTTTGCAACATTCAGTTGAATTATTGAAAAGTTGCGTCTTATGCAACATCCCATTGAATTGTGTTGAAACTTTTGTCTTTTGTGACATTCATTTGAATATGTCGGTAACTATATAAAACAGTAAGCTGTCTTTCCCAGATTTGGTTGCAAGATAATTGATTTGTTATATGACTTGCATATTTCAGAATTCTACTGGATAAGATTAGAGACATTCTTTTTATACTGCTTCACGTTTGTGGATTCTTTGCTTACATTTGTTTTCTGTCTTCCATATTTAGTAAATACAATGGTGGATCAAGGGTCTAATCTTGATCGGTTCAAACTTTACATTGTCTCCTTTGTATGCAATGCAACTTATCATTTATGGATGAGATTTTAGTATTTGTTAAAACTTAAGTGATTTTTTCACTTACATAAAATGTTGGTTATGTTGAAGCTGTTTCTACATTATATACGCCTCTGAATAACTATGTGCAATTGCCTCCCGATGTTACTGTTAATTTTGTTATCTTCAGTTAGTAAAAATGTTACTGATGAACTGTGTGCAGTGCAACATGTAAAGAGGTTTAGTTTTCGGGATTGTATTTGATCTGCTTGGATGTTCACTGAGCTCTGTCATTTGGGTCATAAACTGTTATTCGTTTTATAGAACTGTTCGCAGTTTTAAATTTATTGTCATATTTCTTGGTATTTTAGGTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTTGTAAGTTCCTTATTTTCCTTTACACGCGTAGACTAATGCCATCACGTCCCAAGTCCATTGTCCACATGTTAAGGTTCAACAAAATTCATTTTTGGTAACACTAGTTTTTAGTCTATGACATGATCTCTTTTCCACTCATTCTGTGATTATTATTTTTTTGGATACAGAACATGTATCATGTTGTGTTTTTCGTCTATTTTCTTTATAGCCTCACTTGTCAACATCGAACTTGAATCCCATCATTCATCAGCAAAACAAACTAAGACAGAGAGGCTGAAGGCGGAAGCAAATTATTTTTTTTTTATGTATATATAAATATTATTGATGATGAAACCCTTGGTGAAAATATTGTCTCCGCCACTAGTACAGTAGTACCCTCTATATATGGCACATTTAGTCCTGCAGTTTGATCTTATGAATGTAAAGGATGTCTTGATACAATGAAGTATTGGGGTTTTACTTTTTGAAGGTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAAT</genome_strand>
        <mrna_strand>AAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E310839" ref_strand="-" ref_description="SGN-E310839 	[cLEZ-15-G12]">
      <seq>gtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttctttcatggtcactacgaatgtaaatgggaagcaaggtatacacgatttgaagcgaaagttaacaaaataatgtttagctggagaagttgaataagatattgttccaagaagctatgtagttttaactgataagaatcttgaatatatgtatgtaacttgatttctgagatgggaataatgaaaagtgaaatttatcagttgctgcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="82541" stop="80889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82241" g_stop="82220" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82107" g_stop="82048" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81965" g_stop="81912" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="136" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81604" g_stop="81580" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="161" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81499" g_stop="81189" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="472" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E310839" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82241" e_stop="82220"/>
          <exon e_start="82107" e_stop="82048"/>
          <exon e_start="81965" e_stop="81912"/>
          <exon e_start="81604" e_stop="81580"/>
          <exon e_start="81499" e_stop="81189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</genome_strand>
        <mrna_strand>GTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E309779" ref_strand="+" ref_description="SGN-E309779 	[cLEY-26-N18]">
      <seq>ataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacattcaaaaacatcatgcagaatttgaatttgtcatatccaaaaatgatggacgtcgcagttccagctaacatggtttgtggattacaagagacaaaatcagaagcttgctaaattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="84777" stop="81101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84477" g_stop="84427" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84300" g_stop="84193" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="159" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83064" g_stop="82930" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="294" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82261" g_stop="82220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="336" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82107" g_stop="82048" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="396" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81965" g_stop="81912" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="450" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81604" g_stop="81580" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="475" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81499" g_stop="81401" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="574" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E309779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84477" e_stop="84427"/>
          <exon e_start="84300" e_stop="84193"/>
          <exon e_start="83064" e_stop="82930"/>
          <exon e_start="82261" e_stop="82220"/>
          <exon e_start="82107" e_stop="82048"/>
          <exon e_start="81965" e_stop="81912"/>
          <exon e_start="81604" e_stop="81580"/>
          <exon e_start="81499" e_stop="81401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTC</genome_strand>
        <mrna_strand>ATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTCAAAAACATCATGCAGA................................................................................ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E541786" ref_strand="+" ref_description="SGN-E541786 	[TUS-62-M3]">
      <seq>atggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgactacaaagggttcaccgtcagctcagtgggagaggagatgctatacaatccacgcctatcaaaagataaggaaacatttcaaaacatcatgcagaatttgaanttgtcatatccaaaaatgatggacgtcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="86592" stop="81161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86292" g_stop="86097" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84555" g_stop="84427" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="325" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84300" g_stop="84193" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="433" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83064" g_stop="82930" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="568" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82261" g_stop="82220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="610" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82107" g_stop="82048" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="670" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="81965" g_stop="81912" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="724" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81604" g_stop="81580" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="749" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="81499" g_stop="81461" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="788" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E541786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86292" e_stop="86097"/>
          <exon e_start="84555" e_stop="84427"/>
          <exon e_start="84300" e_stop="84193"/>
          <exon e_start="83064" e_stop="82930"/>
          <exon e_start="82261" e_stop="82220"/>
          <exon e_start="82107" e_stop="82048"/>
          <exon e_start="81965" e_stop="81912"/>
          <exon e_start="81604" e_stop="81580"/>
          <exon e_start="81499" e_stop="81461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACCGTAAGGATACATCCATTAGTTGTTTACTATTAATTTGCATGTCTCAGTTGCTTGTTTACAAGAGTATATGTTTTATTTTTAGGTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAGGTACTTTTCTGGCAAGAAGTTTTTACCTAAGTTTCAAGATTAGGCTAAATTTAGTCTATGTAGTTAAGAAATAGAAACACTTGCTGAATCAACAGCCTACTTTAGTTGAAAACTCTGAAACGAAAAAGTTCCTTGTGTTTGCCGAACAGTAATTGACGAAAGCACATTTTGATAGTGTTATTTTGATTTTTTGCTTATTTGTTGTTCAAATTTAGGCTGTCATATGAAGACCTCTTTCTACAATCATTTCAGTTCTCTTTTTGAAATTAGTTTAAGTACTCATGTTTTTCTGAAACATTCTTTACAGGAAACATTCAAAAACATCATGCAGAGTAAGCCATTCTACCTCTTTGTATTTCTTTTCTTTTGTAATTTTCTCATTACTTGCTGATGATAGCATCTTCTATAACAGATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAG</genome_strand>
        <mrna_strand>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC..................................................................................GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG...................................................................................................................................................................................................................................................................................................................GAAACATTTCAAAACATCATGCAGA................................................................................ATTTGAANTTGTCATATCCAAAAATGATGGACGTCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E283341" ref_strand="+" ref_description="SGN-E283341 	[cLER-12-C17]">
      <seq>gaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacagactttcagggtggaagttcagacaaattgtatgattcagttcattcacagattttcacattgcctaaagacacattattatatcctgctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="86585" stop="81763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86285" g_stop="86097" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84555" g_stop="84427" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="318" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84426" i_stop="83065" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83064" g_stop="82930" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="453" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82261" g_stop="82220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="495" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82107" g_stop="82063" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="540" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E283341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86285" e_stop="86097"/>
          <exon e_start="84555" e_stop="84427"/>
          <exon e_start="83064" e_stop="82930"/>
          <exon e_start="82261" e_stop="82220"/>
          <exon e_start="82107" e_stop="82063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAGGTACATCCTCTCTATGCAATATGCCATGCAATTTGCTGACTTATAGTGGATCTTTGACTAAAGGGAGAAGTTTGATAATGCATACACTCATTTATTTCTCTGGTAAACTCTTAAGATTGCTTTTCTAGCTAACATTAGCTAAACAATGTGATTACATAGATAAGACTATTCTTTAAGTAACTGAGGGGATTAAACTAGAAAATGATAGGATAATGTCAAATGTCATTGTTGAAAACATCATATTTGGTCTTGATAATATCCCTACCTGAGATGGTGGGACAAATAAAGCTACAATCCACGCTAGTAGCATCCTTATTTTGGATGCCATCCATACATGATACTGAATCGAGAACAGATTATATCAGGTGACAAATTTTCTCTTTCCAATTGACTATGGTCCACACTCTCTTATCTTCTATCCTTCTTTAAAAATAATTCTCCTTGTACATTCTGAGAGTAAAATTTATTTGACCAAACAATATGAAGTTTTCCAGGGATTGGGTCGTAGGTATTGTGAACAGTATTTAGTCTTGATGCATCAGCTTTTTTTATTTTGCTTCTCGTATTGTTTATCAAGGAATGACTTTATTTGTTTGGGTTTAGGGATGGATATTGGGATATGAAAATTCTGTCTTATAATAACAATACTTCTCTTACTATATGAACAGGGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAGGCAAGGACATAAAACTGTTACCCATTTTTAACATGAAAGAGAAAAAACAGCATACTATGATGCCGAATGTTCCTTCTATTCTTTCTGATTCATCATCTTTTTGTGAGAACAGATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</genome_strand>
        <mrna_strand>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG................................................................................................................ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E299754" ref_strand="+" ref_description="SGN-E299754 	[cLEW-1-L6]">
      <seq>tggttcgaagccccttttattcaatcgttcaaaccccacaattctcccattcgtgctcaaatgggttcgcattctacgacttcgtcttctgctcaaaatagccctaaacttgttttccgtcagctctttgagaaggaatcatctacctatacttaccttgttgctgatgcttcgcatccccaaaagcccgctttgctgattgacccagtggacaaaacagcggatcgtgatcttgcacttgttaaggagctgggtttgaagcttatatatgctataaacacacatgtacatgctgatcatatcactggttctggcttgatcaagacaaagttccctggtgtgaaatcaatcatatcaaaagcaagcaatgcaaaagctgatatttttgttgaacctggtgataagatctactttggtgatatttttctggaggttcgtgcaactcctggtcatacacttggatgtgttacctatgtcacgggagatggacccaatcaacctcaaccaaggatggcctttactggtgatgcccttttgatacgtggatgtggaaggacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="86591" stop="82637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86291" g_stop="86097" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84555" g_stop="84427" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="324" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84300" g_stop="84193" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="432" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83064" g_stop="82937" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="560" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E299754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86291" e_stop="86097"/>
          <exon e_start="84555" e_stop="84427"/>
          <exon e_start="84300" e_stop="84193"/>
          <exon e_start="83064" e_stop="82937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTGGTAAATTTATTTACCCCTTTTGTATATTTTGTTCATTTGCTTTGATTTTGATTTTGGTGTGTTAGCAATTTGGGGTTATGAGGTTGTAATTAGATAAAGAAATTTCTGTCATGCTTTTATGAGTTTAGGTTTCAACAACTGCAACATATCCAGTGTAATCCCAAACTTGGGTTGGGTTACCCTACTTCAAGAAGGCTGATAGAAAAGGGTTGTTTTTGATAAAGCTTGGCTTAAGTAAAGCGTATCAAAAGTCAAACTGTGTAATGTAAATACATCAGTGAATAATTAATACTAATATTATGAAAAAGTTTGTAGCTTTTTGGTACTTCTCTGAAGTGAAAGGACACTGGGGTATTGTAAATGGAAAATAGGTGATGATGTTCTTATACAAGTACACAGGGAGTGGAGAAACTGAAGTTTTACCTGTAGTCTGTAGTTAAGTTTAAGTTTATTATGATGTCAGGTCATTCAGTTGCTAACTATTGTTGGGGTCACCGGTCCAGATACAGTTTTGAGTTGTTTGATGTACATAACTCGTATTGGTGATAAAGTCCCTTAATTATAAGAAAAAAGGGAAAAGAAATACATGAAGATGGTAACGGAAAGGATAGGACTTAGTTAAAGAACTTATACCAAGGTGAAATCTCTAACTTTAACTTATATCATGTTTCCTGTGGATAACTACTTCTCTACTGCAAAAAGGTAGGGTAAGTATTGCGTACAACCTACCCTCCCCAGACCCCCCCACTTGTGAGATAACAGTTAACACTGGGAATGTTGTTGTTTCCTATGGATAACTAGATCAACAGTTGAAACCTCACGAGTTTATCATTGAGAGGTGTTTTAGCAGAATAAATTTGTTGTGTAGCTTTTCGGTCTGAAGGACATATAGAAAGAAGACAAGCATTATTCTGCTAAAAAGAAAAAAGAATCTCTGTGAAGAAGGCTTTGAACTTCTCAATTGATTAAAGTGGGTGATGCTAGCAGACTAAACAATTTACATTTCCCATCCTTTTCAAATCGATAATTCTTTGAAGATACTCTGTTAATGCAATACCAATGTACTTACTAGCCAAAGCCCACGAAACACTAGTAGAAGAAAGGGGTGTCTAACTAAATGTGCAATTATTAAACCTCAACTCTGGTACATCAGTCGTAGCAACTATATTTTTGGATAGTGTTTTCTGATCAACTAGGAGCATGTGGAATGGAATTTAAATCCAGACAATAAGGGATTGAAAAGTCAAACAAGGAGATAGTGAAGTTAGTGCAGCTTATTTATAGTCTTTGTCAATGTTTTAGGGTGAACATCAGGTAAACTGTAGCACATAATTCATTATGCTGCATCGTGTCTATGATTATATTATTCATCACTAACTGTAAGTTGAAGTTTTAATTCACATTGCATATATATGTCTTGTAAATTGAAGGAACTAATATTGATTTAGTTCAATTATTTTTAAACACCTCTCATTATCTGCTATTGCTTTATGTTAGACACTGTGATTTAAAGTTGACACATGAAAGTAATCCAACTGCAGCTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAGGTTGGGCTTAAACTTCTTAAATTTGGTAACTAATTAGTTTATTTGTAAATGATAATTTGCTTGATACTGCTTTTCCGTTTCTCCTGCTGATTTTATAAAGGTTCACTATAATTTTCAATCTCTCAGACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAGGTATAGACATCTGAAGTTTTTTAACTTTAGATTTTTCCATATAGCTTTAGTGGTAGAAAATTATGTCGAGGCTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAACGTTAGGAATATCACCTTGTTCTATATGTTTGAACCATGTTCCAAATGTCTGAACATTTATATGTACTACAAAAAACATTTATGGGGTTGTGCCTAACGGTTCTTGAAAATTATGTCAATGATTACGGTTCTATAGTATTTCCTTTGCAAGGAAAAGTTAGTTCAGCGTTAGGAAAATAACCATGTTCTAAATGTCTGAACATTTGTATGTACTACAAAACATTTATGGGGCTGTGCCTAACGGTTCTTAAACAACTTGCAAATTCAGGGTCATTTTACCTTTGCTTATTGTGGTCTATTCATCAATAATCATGGAGAACATGTGATTTTGTTTTGAGATAAGATGAGGTTGTTTGAATGCTCTTCGTTATTTTGGGCATGGCCTAGTTGTTATCACAATTAGAAATAGAATGAGCTTGATTTTTTTTTTCTTGTAATTACTTGGCAGGCCCTTAATTGGGTTAGTCAGTTTTCTTGATAAGCATTAGTTCTTTAAATTCTTGGTTCTGTGACAAGAAGATCTATGTTTAACATCATTAGGGTAACATGGTATTTGAGCATTATGGCAAATTTATTTGGNTAACTTTCATTTAGTTTCATCTTTGAAATAATTAAGATGCCCAATTTCAATTTTCAACTCGTCGTACAAATTTCTTTGAGAGAAATATTTATGATCTTATTAGTTGAATCCTGTTTGGTCTTCAGTCACTGAAATGTATGGCTTAGTGACATGTCATCTCAATAAAGACTTCAATAACACAATTAAATGATTAATACATTTCCTCAAAACTTTCTCTGAACTGCAGTTTTTTCTAGTTTACCTCGGCTTAGAACCATTCTATAACTGTCATTTTCTACCTCTCTTGACACTTACAACATTGTTTTTTCCCCGTTTCCATGCCAGTCATATTGAACCAAATAGAATTGTATTAGATGAATGAGCCTGAAAAATCAACTAAACTAGGCTGTAGTGCATGATCTTTGAGCCGTTTTCTAATGTAATAGTGCTTCCATTGCAGGTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGA</genome_strand>
        <mrna_strand>TGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG..............................................................................................................................ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E298018" ref_strand="+" ref_description="SGN-E298018 	[cLEW-12-E11]">
      <seq>ccgcaaccagaaaactggtttggagctggggctaaggagcccattgcttttgtgattttagaagttcttgaagcagctgacatgaagccatcagatttaaatggattggctgatccatatgttaaggggcacattggcctttacagattcaggactaagactaagaagaagacattgaatccacagtggcgtgaggagttcaagattccagtctgtacatgggagtctcctaacaacatgctcaatgtcgaagttcgtgacaaagaccatttatatgatgatacattgggaaaatgttccatcaatatctgtgattttagggatggccagaggcatgatatgtggctgtctcttcagaacatcaaaattgggagattgcatcttgccataactgttgttgattgtgccaaaaagggcgcggagcagtcatatgatagcggaagtatggtcaatgaacaggatagcaaatttgctgaagtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="92832" stop="94458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93135" g_stop="93227" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="103" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93228" i_stop="93305" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93306" g_stop="93492" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="290" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93493" i_stop="93662" i_length="170">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93663" g_stop="93786" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="414" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93787" i_stop="94016" i_length="230">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.530" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94017" g_stop="94158" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="556" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E298018" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93135" e_stop="93227"/>
          <exon e_start="93306" e_stop="93492"/>
          <exon e_start="93663" e_stop="93786"/>
          <exon e_start="94017" e_stop="94158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATGGTACCTAGAAAATAATCTTACTGTACTTCTGTCAAATTATTAGCTATGTATGGCTAAAAGCTGGGTGGTCATTTTCAGGATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGGGTTCGTCCTGTTCTCTTGGCAATTTAAATACTAATATTCTTCTCTATAGGTGTATGAGTTAACTATAGTTTCTTCTTCTTTTCTTTCGACATCAGTATGTTCTCCAATGGAATATTATTCGAAGCCGACATAAGCAACTTATTCACTTCTTATTTGTTCTTTGTGAACAGAAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAGGTATATGTTTTTCCTGTGAAATTTGTCATGAACACTAAATTGAAATGTTAAGAAGCAAAGATTTCTCACTTATTATCTTCTTTTGCACCTGAAAAATGGTTTCCATTACTCATAATTTTATAATGGATGAATTCAGTAAACAAAAATAACGGTGCTGAGGAATGAGTATAGTTTATTATGATAAATAATGACGGAAAATAAGGAAGTACTAAGTTTTCAGCAATTTTCAGGGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTA</genome_strand>
        <mrna_strand>AAAACTGGTTTGGAGCTGGGGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG..............................................................................GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG..........................................................................................................................................................................AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG......................................................................................................................................................................................................................................GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATTTGCTGAAGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E244501" ref_strand="+" ref_description="SGN-E244501 	[cLED-38-E21]">
      <seq>aaaaagggcgcggagcagtcatatgatagcggaagtatggtcaatgaacaggatagcaaatctgctgaggtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93715" stop="94879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93781" g_stop="93786" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93787" i_stop="94016" i_length="230">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.530" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94017" g_stop="94579" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="569" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E244501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93781" e_stop="93786"/>
          <exon e_start="94017" e_stop="94579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGTATATGTTTTTCCTGTGAAATTTGTCATGAACACTAAATTGAAATGTTAAGAAGCAAAGATTTCTCACTTATTATCTTCTTTTGCACCTGAAAAATGGTTTCCATTACTCATAATTTTATAATGGATGAATTCAGTAAACAAAAATAACGGTGCTGAGGAATGAGTATAGTTTATTATGATAAATAATGACGGAAAATAAGGAAGTACTAAGTTTTCAGCAATTTTCAGGGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTAC</genome_strand>
        <mrna_strand>AAAAAG......................................................................................................................................................................................................................................GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E236632" ref_strand="+" ref_description="SGN-E236632 	[cLED-13-F20]">
      <seq>aatgaacaggatagcaaatctgctgaggtggataaaactgaacaaagctccttaaccactgaatcagttgatgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93753" stop="94781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94053" g_stop="94481" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E236632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94053" e_stop="94481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTA</genome_strand>
        <mrna_strand>AATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E228346" ref_strand="+" ref_description="SGN-E228346 	[cLED-3-M7]">
      <seq>tgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagtgagaaacaagacgaagaaaatccttaaaaacgctggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93824" stop="94977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94124" g_stop="94677" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E228346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94124" e_stop="94677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</genome_strand>
        <mrna_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E232033" ref_strand="+" ref_description="SGN-E232033 	[cLED-7-M20]">
      <seq>tgaaccttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagtgagaaacaagacgaagaaaatccttaaaaacgctggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93824" stop="94975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94124" g_stop="94675" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E232033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94124" e_stop="94675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAA</genome_strand>
        <mrna_strand>TGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E231368" ref_strand="+" ref_description="SGN-E231368 	[cLED-10-F7]">
      <seq>accttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttatggcagttaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcaggaaatgggaaaaaccccacaaaggggagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93827" stop="94936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94127" g_stop="94636" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E231368" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94127" e_stop="94636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</genome_strand>
        <mrna_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTATGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E233522" ref_strand="+" ref_description="SGN-E233522 	[cLED-9-E2]">
      <seq>accttcaaaaactggagataagtatgaacctattaatattgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagatttttcaggtcgttttcacaggggtttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93827" stop="94710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94127" g_stop="94410" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E233522" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94127" e_stop="94410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATA</genome_strand>
        <mrna_strand>ACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTTTTCAGGTCGTTTTCACAGGGGTTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E304369" ref_strand="+" ref_description="SGN-E304369 	[cLEX-12-H22]">
      <seq>ttgaagggcagcgggagactggtatatgggtacaccaaccagggagtgaagtagcacaagtatgggaaccaagaaaggggaagaacagggttattggcggagaagttcatagtgaaaatgctggttctaagggaagtcttaagtcaacatcaggcggctcctctcactataatgaatacaagcttgatggaagtggtaacggaagtaagccagattctccaggtcgttttcacaggggtttacataagatcagctcgctcttccggagaagttcaagtaaagaggataagtcaggcaatcttggagagcctgatttatctccgcgtgtgaatcttagggcaggtaatgccaaggatataggagtgaagattatagtggatgacaccattttgccttcatcattaacaacacctacagaagatgggaaagataactgcgcacgaaatgggaaaaaccccacaaaggggagagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="93865" stop="94938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94165" g_stop="94638" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E304369" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94165" e_stop="94638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGA</genome_strand>
        <mrna_strand>TTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGGTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCACGAAATGGGAAAAACCCCACAAAGGGGAGAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E322224" ref_strand="+" ref_description="SGN-E322224 	[cTOB-24-P21]">
      <seq>agaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttaagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcagccaaatcctccttcagctgaaggcctacatccccaaaaatggaaccaaagtagttatgccgcggtcaggcaattcagtggatttgttacggatggtgatattccgaaacaagctgctgcccttactgccagcatcgctgacactaaatgggcagcagctatcgaaaaaagcaggagtaaagataatagtacgatttatacagttgcacaatacaactctccctttgangtcagggctagagtcaatgagatgtggtttacttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="98279" stop="96918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97979" g_stop="97727" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97726" i_stop="97631" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97630" g_stop="97218" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="666" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E322224" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97979" e_stop="97727"/>
          <exon e_start="97630" e_stop="97218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</genome_strand>
        <mrna_strand>AGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGANGTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E244181" ref_strand="+" ref_description="SGN-E244181 	[cLEE-1-D6]">
      <seq>aagaaatactcactagtaaaaatgaattctttgatgatcaagttgttgttttttctcgtccttatttccaatggatattcaacaaaattagattcatatcctccaacttgtaaaaaaattgaatgcccaaattatgatgtgattgaatctggaaaagactatgaaattcgtcgttacaattcccctatgtggatgtctactgaaccaattgatgatacgtcatttgtttccgccacccgaatcggtttcaccaggttatttatgtatattcaaggaaagaacgatcagcatgagaaaatggatatgacagcaccagttatgacacaagttcagccaagtgatggaccattatgttccacctcatttgttgtgagttttaacgtaccaaagaagaatcaaccaaatcctccttcagctgaaggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="-" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="98280" stop="97159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97980" g_stop="97727" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97726" i_stop="97631" i_length="96">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97630" g_stop="97459" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="426" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="-" ref_id="SGN-E244181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97980" e_stop="97727"/>
          <exon e_start="97630" e_stop="97459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAGGTACAACTCAACTCGATATGTTATATCAGTAAACTTGTTTGAGATTATAGCGTAGTTATGTTTTTACGTTGCATATATACTATTTGTCATTGGCAGGTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTA</genome_strand>
        <mrna_strand>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG................................................................................................GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTCAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAACCAAATCCTCCTTCAGCTGAAGGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E544068" ref_strand="+" ref_description="SGN-E544068 	[TUS-66-D9]">
      <seq>gagagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaggctgtttcattgcatacaaggatgatttgttgtttgaaagagttagtacttatcaagctaaggtcgagctgttataaaccttacctgttactgcatcacctcgccagtcctagatgtgctgcttagtgtagagttctgttttgtttgctttgaagatatatggtaagcctagcttcatgcccttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="117541" stop="118922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117841" g_stop="118622" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E544068" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117841" e_stop="118622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</genome_strand>
        <mrna_strand>GAGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAAGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E302815" ref_strand="+" ref_description="SGN-E302815 	[cLEY-2-M5]">
      <seq>agagagagattggtggcgctgatacggttagggagggttgttgttggggtggtggcattgatggcggaggtggttgcggtggatgtggaggtggttgacttaagtttctaaataattatacattagacataaagttcgattgttaaaggagaaaacgtgtaattttatgtgtttattaagttgccgattacgtatgttacacaaaacacctatgaattaaaaaatgaacctcacaattcaagtactagagtatttaaacatctctaatctaaaatgttatggttcagaaagatgtgttgaagttctcaatttgggttttggtgctgggtactttaatgtttttttacttaaaagttaagtgatttttaagaatttcaggatattttgattgataacagagagttgctcggacggtaaatattaagctggatacttgtggattatcaaatagaagatacatcttggatcatattcttgagctgtaacgagtgttcagaaagtctaggaaaatgtaccacatccatacgagctgaagtgttagaacattttagcccttttagtgcaactatgagccatctagtgtatgtactaaagctgtttcattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="117542" stop="118749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117842" g_stop="118449" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E302815" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117842" e_stop="118449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCAT</genome_strand>
        <mrna_strand>AGAGAGAGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAAGCTGTTTCATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-oIcLko/sgn_ests_tomato" ref_id="SGN-E544067" ref_strand="-" ref_description="SGN-E544067 	[TUS-66-D9]">
      <seq>ttttttttatgttattattgaacgtcatacaactggttagctgctaactttagtttcaaagtgacattgttgtgcagaagggatacttatccctcctatcctttacagttgttgatataaacaattcggtgaccaaactattggctttaggtgccgagttggatggccccatcaaatatgaaatccatggaaaggttttgctgctttgaggtgtgtggatggacatatgttaggtctttatcagccgtcctaaggcatcctcgaaacaaccacttgcaggtaaaagtaatcacgacttctgtaacaaggcaaattggtttctcagcatagattttgcattcgggtgtactgttgaaagagagaatcgactcttgtacatggaggtgaagcacatatagggagtgttacagcaagaaacaatcaatacagtagctgaattcctactgtatttgtttttgatgttctgttctggttatccttttgtgtaacatgatgttttgtattcaccaacatgaattgtggtgctccacccttaaccagaggactcggattcgagcttccggtatggagaaaattttgttgagaaagccactcttgaataggtcatgcactgtacgatttggattcaatcggagctccaacgtgggctcctgacactggatgggaaaaccaaaaaaaaaaacatgatgttgtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-g6h4w/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059A10.1" temp_strand="+" temp_description="C07HBa0059A10.1  AC212621.1 htgs_phase:1 submitted_to_sgn_as:gi|158262117|gb|AC212621.1| sequenced_by:ensat Solanum lycopersicum chromosome 7 clone C07HBa0059A10, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces">
        <position start="118514" stop="119964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118814" g_stop="119007" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119008" i_stop="119156" i_length="149">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119157" g_stop="119653" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="691" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="727"/>
      <MATCH_line gen_id="C07HBa0059A10.1" gen_strand="+" ref_id="SGN-E544067" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118814" e_stop="119007"/>
          <exon e_start="119157" e_stop="119653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAGGTAACCAAAATTTCTTAAGGTTGCTTTCAAACTTGTTGACCAGCATTGGTTTATGCTCGTTATTTACACATCGATTCAGAATTTTGTTCTGCATTCAGCATTTATGTTGATGAAACTGACCTATCGCATACTTTATATGGTCCTTGTAGGTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</genome_strand>
        <mrna_strand>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG.....................................................................................................................................................GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>119</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8167" PGL_stop="6949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8167" e_stop="7969"/>
            <exon e_start="7869" e_stop="6949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8167" e_stop="7969" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7968" i_stop="7870" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="7869" e_stop="6949" e_length="921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="7969"/>
              <exon start="7869" stop="7414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="7969"/>
              <exon start="7869" stop="7438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8167" stop="7969"/>
              <exon start="7869" stop="7498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7989" stop="7969"/>
              <exon start="7869" stop="7102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371869" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7802" stop="7158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7802" stop="7304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7682" stop="6991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7643" stop="6949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7628" stop="6949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7537" stop="7014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7422" stop="6949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314651" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTCACCAATTATATGGTACTAGAGTGGCAGTACTGGCTGGTGATTTTATGTTTGCACAGTCGTCCTGGTACCTAGCTAACCTTGAAAACCTTGAAGTCATAAAGCTCATCAGTCAG : GTTATTAAAGACTTTGCAAGTGGTGAAATAAAGCAGGCCTCTAACTTGTTCGACTGTGATGTTGGACTGGATGAATATTTGCTCAAGAGTTACTATAAAACGGCCTCCTTGATTGCTGCAAGCACCAAAGGAGCTGCCATTTTCAGTGAAGTTGGCAGTGATATTAGTGAACAAATGTTTCAATATGGGAGGAATCTTGGTTTATCGTTCCAGATTGTTGATGACATATTGGACTTCACACAATCAGCCGCACAACTGGGAAAGCCAGCTGGAAGTGACTTAGCCAAGGGAAACCTTACTGCACCAGTACTTTTTGCATTAGAGAAAGAGCCAAACCTTAGGAATATAATCGAATCAGAATTTCACGATGCTGGTTCTCTCGAGGAGGCCATCAATCTGGTGAAAAGCTGTGGGGGAATTCAACGAGCACAAGATTTGGCAAAGGAGAAAGCTGATTTAGCAATGCAGAACCTAAAATGCCTTCCATCTAGTCCTTTTCAAGCAGCACTTGAGGAAATCGTGAAGTATAATCTGGAGAGAATTGAATAGACGAAAACAAAGGACGAAACTATACAACTTTGGTTTATTATTCTCTGAAAGCTCTTCATATCTAACAATATCTGGAGCACAGAGTAGAAGCTATTACTATAGTTTGAATGGCAACAACGATCAGAACGAAAGTGCTTCACTATGTTCATATATTATACCCATACAGGTTGTAATTTTCAGTTCCTAATACAGCAATATGGTGTTCCAGCATTCTTTATAATTTGGCTAATAAATTGTCAAATTTCAACTGTTGTTGTACACTAAAGAAATTTCACATTACAAATAATGTCATGTATTAGTATTTACTATTGGCTTTCTTGGATGAACATATATGTTATAAATTGATAATACAATAAACATATTACACCTTAA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  Y  S  P  I  I  W  Y  *  S  G  S  T  G  W  *  F  Y  V  C  T  V  V  L  V  P  S  *  P  *  K  P  *  S  H  K  A  H  Q  S   : G  Y  *  R  L  C  K  W  *  N  K  A  G  L  *  L  V  R  L  *  C  W  T  G  *  I  F  A  Q  E  L  L  *  N  G  L  L  D  C  C  K  H  Q  R  S  C  H  F  Q  *  S  W  Q  *  Y  *  *  T  N  V  S  I  W  E  E  S  W  F  I  V  P  D  C  *  *  H  I  G  L  H  T  I  S  R  T  T  G  K  A  S  W  K  *  L  S  Q  G  K  P  Y  C  T  S  T  F  C  I  R  E  R  A  K  P  *  E  Y  N  R  I  R  I  S  R  C  W  F  S  R  G  G  H  Q  S  G  E  K  L  W  G  N  S  T  S  T  R  F  G  K  G  E  S  *  F  S  N  A  E  P  K  M  P  S  I  *  S  F  S  S  S  T  *  G  N  R  E  V  *  S  G  E  N  *  I  D  E  N  K  G  R  N  Y  T  T  L  V  Y  Y  S  L  K  A  L  H  I  *  Q  Y  L  E  H  R  V  E  A  I  T  I  V  *  M  A  T  T  I  R  T  K  V  L  H  Y  V  H  I  L  Y  P  Y  R  L  *  F  S  V  P  N  T  A  I  W  C  S  S  I  L  Y  N  L  A  N  K  L  S  N  F  N  C  C  C  T  L  K  K  F  H  I  T  N  N  V  M  Y  *  Y  L  L  L  A  F  L  D  E  H  I  C  Y  K  L  I  I  Q  *  T  Y  Y  T  L  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  T  I  H  Q  L  Y  G  T  R  V  A  V  L  A  G  D  F  M  F  A  Q  S  S  W  Y  L  A  N  L  E  N  L  E  V  I  K  L  I  S  Q  :  V  I  K  D  F  A  S  G  E  I  K  Q  A  S  N  L  F  D  C  D  V  G  L  D  E  Y  L  L  K  S  Y  Y  K  T  A  S  L  I  A  A  S  T  K  G  A  A  I  F  S  E  V  G  S  D  I  S  E  Q  M  F  Q  Y  G  R  N  L  G  L  S  F  Q  I  V  D  D  I  L  D  F  T  Q  S  A  A  Q  L  G  K  P  A  G  S  D  L  A  K  G  N  L  T  A  P  V  L  F  A  L  E  K  E  P  N  L  R  N  I  I  E  S  E  F  H  D  A  G  S  L  E  E  A  I  N  L  V  K  S  C  G  G  I  Q  R  A  Q  D  L  A  K  E  K  A  D  L  A  M  Q  N  L  K  C  L  P  S  S  P  F  Q  A  A  L  E  E  I  V  K  Y  N  L  E  R  I  E  *  T  K  T  K  D  E  T  I  Q  L  W  F  I  I  L  *  K  L  F  I  S  N  N  I  W  S  T  E  *  K  L  L  L  *  F  E  W  Q  Q  R  S  E  R  K  C  F  T  M  F  I  Y  Y  T  H  T  G  C  N  F  Q  F  L  I  Q  Q  Y  G  V  P  A  F  F  I  I  W  L  I  N  C  Q  I  S  T  V  V  V  H  *  R  N  F  T  L  Q  I  M  S  C  I  S  I  Y  Y  W  L  S  W  M  N  I  Y  V  I  N  *  *  Y  N  K  H  I  T  P  * </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  L  F  T  N  Y  M  V  L  E  W  Q  Y  W  L  V  I  L  C  L  H  S  R  P  G  T  *  L  T  L  K  T  L  K  S  *  S  S  S  V  R :   L  L  K  T  L  Q  V  V  K  *  S  R  P  L  T  C  S  T  V  M  L  D  W  M  N  I  C  S  R  V  T  I  K  R  P  P  *  L  L  Q  A  P  K  E  L  P  F  S  V  K  L  A  V  I  L  V  N  K  C  F  N  M  G  G  I  L  V  Y  R  S  R  L  L  M  T  Y  W  T  S  H  N  Q  P  H  N  W  E  S  Q  L  E  V  T  *  P  R  E  T  L  L  H  Q  Y  F  L  H  *  R  K  S  Q  T  L  G  I  *  S  N  Q  N  F  T  M  L  V  L  S  R  R  P  S  I  W  *  K  A  V  G  E  F  N  E  H  K  I  W  Q  R  R  K  L  I  *  Q  C  R  T  *  N  A  F  H  L  V  L  F  K  Q  H  L  R  K  S  *  S  I  I  W  R  E  L  N  R  R  K  Q  R  T  K  L  Y  N  F  G  L  L  F  S  E  S  S  S  Y  L  T  I  S  G  A  Q  S  R  S  Y  Y  Y  S  L  N  G  N  N  D  Q  N  E  S  A  S  L  C  S  Y  I  I  P  I  Q  V  V  I  F  S  S  *  Y  S  N  M  V  F  Q  H  S  L  *  F  G  *  *  I  V  K  F  Q  L  L  L  Y  T  K  E  I  S  H  Y  K  *  C  H  V  L  V  F  T  I  G  F  L  G  *  T  Y  M  L  *  I  D  N  T  I  N  I  L  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8166" stop="7969"/>
                    <exon start="7869" stop="7321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFTIHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASNLFDCDVGLDEYLLKSYYKTASLIAASTKGAAIFSEVGSDISEQMFQYGRNLGLSFQIVDDILDFTQSAAQLGKPAGSDLAKGNLTAPVLFALEKEPNLRNIIESEFHDAGSLEEAINLVKSCGGIQRAQDLAKEKADLAMQNLKCLPSSPFQAALEEIVKYNLERIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7346" stop="7134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIWRELNRRKQRTKLYNFGLLFSESSSYLTISGAQSRSYYYSLNGNNDQNESASLCSYIIPIQVVIFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8271" PGL_stop="9100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8271" e_stop="9100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8271" e_stop="9100" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8271" stop="8899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8271" stop="8884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8271" stop="8739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8316" stop="8603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8498" stop="8771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8516" stop="9100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8733" stop="9019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216050" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGATTAGCCGAAGACAAGTTCCTGGAATTGTCAAGCACTGCCCACCAAAATCGACAAAGACTTCTAGGCCAGAGCAGACAAAAGCGGAGCATCTTTATGTTGGTGTGGATCCTTATATGAATCATAGGCCAGAAATGAACAGTGACATAATTGATTGCACCTCCGGTGGACTCGTCAAGAACGCTAATAGAAATAGACCGCCGGTTGTGGGAACCTATACTGAGTCAATGACTGCAGAGTTCTCTGATGCTACATCAAGTGATTGGTCCCTCTTTACAAGCTCAGATGAAGCATCATTTACTACTGAGAGTACCAGATACTCTTTTAGTACTGTTGACTATGGAGATGCAAACGCTGCTGATCCGTTCTCTTCCATCATCAACAGCTTATGTGGATCAGATTATTCATCTAACAGAACAGTGGCGTGTAGTATGTTTTCAAGTAGTAAACCGCATACAAGATTCTTTTCAGAAAGTAAGGGTTCTGTTTTGGATTCAACTGCTGGGACTAGCATACCGAGACAGGTTACTGTTCCTTATTCTGAAGGTTTTCATAGTGATAGTAGTAACCATGTACATGTAGAATATGGTAGTGAGCCTAGATATGAACAAACTTACTATCCATATAATGTGTAGTTTCTTGAAATTCCAAATCATTATATGTCGAATTAGCTAGGTACAAGCTGTGCTTCTGTTTTGCTAATCAATATTTTATTGAATGGAAGCACATCAATCATTTTCTAGTTCAATGGAACAACTGGTCATTTTTTGTTATTTTGCAGTTGTAAATATGCTTGCTGTAGCTAATTATCTTGATTCTTTACAATCT</gDNA_template>
            <first_frame> E  D  *  P  K  T  S  S  W  N  C  Q  A  L  P  T  K  I  D  K  D  F  *  A  R  A  D  K  S  G  A  S  L  C  W  C  G  S  L  Y  E  S  *  A  R  N  E  Q  *  H  N  *  L  H  L  R  W  T  R  Q  E  R  *  *  K  *  T  A  G  C  G  N  L  Y  *  V  N  D  C  R  V  L  *  C  Y  I  K  *  L  V  P  L  Y  K  L  R  *  S  I  I  Y  Y  *  E  Y  Q  I  L  F  *  Y  C  *  L  W  R  C  K  R  C  *  S  V  L  F  H  H  Q  Q  L  M  W  I  R  L  F  I  *  Q  N  S  G  V  *  Y  V  F  K  *  *  T  A  Y  K  I  L  F  R  K  *  G  F  C  F  G  F  N  C  W  D  *  H  T  E  T  G  Y  C  S  L  F  *  R  F  S  *  *  *  *  *  P  C  T  C  R  I  W  *  *  A  *  I  *  T  N  L  L  S  I  *  C  V  V  S  *  N  S  K  S  L  Y  V  E  L  A  R  Y  K  L  C  F  C  F  A  N  Q  Y  F  I  E  W  K  H  I  N  H  F  L  V  Q  W  N  N  W  S  F  F  V  I  L  Q  L  *  I  C  L  L  *  L  I  I  L  I  L  Y  N   </first_frame>
            <second_frame>  K  I  S  R  R  Q  V  P  G  I  V  K  H  C  P  P  K  S  T  K  T  S  R  P  E  Q  T  K  A  E  H  L  Y  V  G  V  D  P  Y  M  N  H  R  P  E  M  N  S  D  I  I  D  C  T  S  G  G  L  V  K  N  A  N  R  N  R  P  P  V  V  G  T  Y  T  E  S  M  T  A  E  F  S  D  A  T  S  S  D  W  S  L  F  T  S  S  D  E  A  S  F  T  T  E  S  T  R  Y  S  F  S  T  V  D  Y  G  D  A  N  A  A  D  P  F  S  S  I  I  N  S  L  C  G  S  D  Y  S  S  N  R  T  V  A  C  S  M  F  S  S  S  K  P  H  T  R  F  F  S  E  S  K  G  S  V  L  D  S  T  A  G  T  S  I  P  R  Q  V  T  V  P  Y  S  E  G  F  H  S  D  S  S  N  H  V  H  V  E  Y  G  S  E  P  R  Y  E  Q  T  Y  Y  P  Y  N  V  *  F  L  E  I  P  N  H  Y  M  S  N  *  L  G  T  S  C  A  S  V  L  L  I  N  I  L  L  N  G  S  T  S  I  I  F  *  F  N  G  T  T  G  H  F  L  L  F  C  S  C  K  Y  A  C  C  S  *  L  S  *  F  F  T  I  </second_frame>
            <third_frame>   R  L  A  E  D  K  F  L  E  L  S  S  T  A  H  Q  N  R  Q  R  L  L  G  Q  S  R  Q  K  R  S  I  F  M  L  V  W  I  L  I  *  I  I  G  Q  K  *  T  V  T  *  L  I  A  P  P  V  D  S  S  R  T  L  I  E  I  D  R  R  L  W  E  P  I  L  S  Q  *  L  Q  S  S  L  M  L  H  Q  V  I  G  P  S  L  Q  A  Q  M  K  H  H  L  L  L  R  V  P  D  T  L  L  V  L  L  T  M  E  M  Q  T  L  L  I  R  S  L  P  S  S  T  A  Y  V  D  Q  I  I  H  L  T  E  Q  W  R  V  V  C  F  Q  V  V  N  R  I  Q  D  S  F  Q  K  V  R  V  L  F  W  I  Q  L  L  G  L  A  Y  R  D  R  L  L  F  L  I  L  K  V  F  I  V  I  V  V  T  M  Y  M  *  N  M  V  V  S  L  D  M  N  K  L  T  I  H  I  M  C  S  F  L  K  F  Q  I  I  I  C  R  I  S  *  V  Q  A  V  L  L  F  C  *  S  I  F  Y  *  M  E  A  H  Q  S  F  S  S  S  M  E  Q  L  V  I  F  C  Y  F  A  V  V  N  M  L  A  V  A  N  Y  L  D  S  L  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8272" stop="8907"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISRRQVPGIVKHCPPKSTKTSRPEQTKAEHLYVGVDPYMNHRPEMNSDIIDCTSGGLVKNANRNRPPVVGTYTESMTAEFSDATSSDWSLFTSSDEASFTTESTRYSFSTVDYGDANAADPFSSIINSLCGSDYSSNRTVACSMFSSSKPHTRFFSESKGSVLDSTAGTSIPRQVTVPYSEGFHSDSSNHVHVEYGSEPRYEQTYYPYNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9037" PGL_stop="8602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9037" e_stop="8602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="9037" e_stop="8602" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9037" stop="8602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGACCAGTTGTTCCATTGAACTAGAAAATGATTGATGTGCTTCCATTCAATAAAATATTGATTAGCAAAACAGAAGCACAGCTTGTACCTAGCTAATTCGACATATAATGATTTGGAATTTCAAGAAACTACACATTATATGGATAGTAAGTTTGTTCATATCTAGGCTCACTACCATATTCTACATGTACATGGTTACTACTATCACTATGAAAACCTTCAGAATAAGGAACAGTAACCTGTCTCGGTATGCTAGTCCCAGCAGTTGAATCCAAAACAGAACCCTTACTTTCTGAAAAGAATCTTGTATGCGGTTTACTACTTGAAAACATACTACACGCCACTGTTCTGTTAGATGAATAATCTGATCCACATAAGCTGTTGATGATGGAAGAGAACGGATCAGCAGCGTTTGCATCTCCATAGTCAACAGT</gDNA_template>
            <first_frame> N  D  Q  L  F  H  *  T  R  K  *  L  M  C  F  H  S  I  K  Y  *  L  A  K  Q  K  H  S  L  Y  L  A  N  S  T  Y  N  D  L  E  F  Q  E  T  T  H  Y  M  D  S  K  F  V  H  I  *  A  H  Y  H  I  L  H  V  H  G  Y  Y  Y  H  Y  E  N  L  Q  N  K  E  Q  *  P  V  S  V  C  *  S  Q  Q  L  N  P  K  Q  N  P  Y  F  L  K  R  I  L  Y  A  V  Y  Y  L  K  T  Y  Y  T  P  L  F  C  *  M  N  N  L  I  H  I  S  C  *  *  W  K  R  T  D  Q  Q  R  L  H  L  H  S  Q  Q  </first_frame>
            <second_frame>  M  T  S  C  S  I  E  L  E  N  D  *  C  A  S  I  Q  *  N  I  D  *  Q  N  R  S  T  A  C  T  *  L  I  R  H  I  M  I  W  N  F  K  K  L  H  I  I  W  I  V  S  L  F  I  S  R  L  T  T  I  F  Y  M  Y  M  V  T  T  I  T  M  K  T  F  R  I  R  N  S  N  L  S  R  Y  A  S  P  S  S  *  I  Q  N  R  T  L  T  F  *  K  E  S  C  M  R  F  T  T  *  K  H  T  T  R  H  C  S  V  R  *  I  I  *  S  T  *  A  V  D  D  G  R  E  R  I  S  S  V  C  I  S  I  V  N  S </second_frame>
            <third_frame>   *  P  V  V  P  L  N  *  K  M  I  D  V  L  P  F  N  K  I  L  I  S  K  T  E  A  Q  L  V  P  S  *  F  D  I  *  *  F  G  I  S  R  N  Y  T  L  Y  G  *  *  V  C  S  Y  L  G  S  L  P  Y  S  T  C  T  W  L  L  L  S  L  *  K  P  S  E  *  G  T  V  T  C  L  G  M  L  V  P  A  V  E  S  K  T  E  P  L  L  S  E  K  N  L  V  C  G  L  L  L  E  N  I  L  H  A  T  V  L  L  D  E  *  S  D  P  H  K  L  L  M  M  E  E  N  G  S  A  A  F  A  S  P  *  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0059A10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9350" PGL_stop="9734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9350" e_stop="9734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="9350" e_stop="9734" e_length="385"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9350" stop="9734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCAGAATCAGATTGTATTACACAATCTATCTTATTTGCAATATATAATGTAGCATTCTGTTCATACAAAATTACTAGGGACTTGTCAACTATCCTTTGATAAGTAGTAACAAAAGAAGCCTCTCAAATGGCAAGTGCTTTTTCCAAATCAAAAGTAAACCATATCTCATTAACTCTGTTCTTGAACTCAAATGGGGAGTTGTATCCCGCCACTGTATACAACGTTGTATTGTCTGCAGCATGGCTTTTGTCGATGGCTGCTGCCCAATTAGTGCCAGCAATACTGGCACTCAGGGCAGCGGCTTCTCTTGGAAGGTCATCATCAGCTATAAATCCACTGAATTGCCTGACCGCGACGTAAGTGTCCCCCCATTTCTGGAGAT</gDNA_template>
            <first_frame> L  S  E  S  D  C  I  T  Q  S  I  L  F  A  I  Y  N  V  A  F  C  S  Y  K  I  T  R  D  L  S  T  I  L  *  *  V  V  T  K  E  A  S  Q  M  A  S  A  F  S  K  S  K  V  N  H  I  S  L  T  L  F  L  N  S  N  G  E  L  Y  P  A  T  V  Y  N  V  V  L  S  A  A  W  L  L  S  M  A  A  A  Q  L  V  P  A  I  L  A  L  R  A  A  A  S  L  G  R  S  S  S  A  I  N  P  L  N  C  L  T  A  T  *  V  S  P  H  F  W  R  </first_frame>
            <second_frame>  S  Q  N  Q  I  V  L  H  N  L  S  Y  L  Q  Y  I  M  *  H  S  V  H  T  K  L  L  G  T  C  Q  L  S  F  D  K  *  *  Q  K  K  P  L  K  W  Q  V  L  F  P  N  Q  K  *  T  I  S  H  *  L  C  S  *  T  Q  M  G  S  C  I  P  P  L  Y  T  T  L  Y  C  L  Q  H  G  F  C  R  W  L  L  P  N  *  C  Q  Q  Y  W  H  S  G  Q  R  L  L  L  E  G  H  H  Q  L  *  I  H  *  I  A  *  P  R  R  K  C  P  P  I  S  G  D </second_frame>
            <third_frame>   L  R  I  R  L  Y  Y  T  I  Y  L  I  C  N  I  *  C  S  I  L  F  I  Q  N  Y  *  G  L  V  N  Y  P  L  I  S  S  N  K  R  S  L  S  N  G  K  C  F  F  Q  I  K  S  K  P  Y  L  I  N  S  V  L  E  L  K  W  G  V  V  S  R  H  C  I  Q  R  C  I  V  C  S  M  A  F  V  D  G  C  C  P  I  S  A  S  N  T  G  T  Q  G  S  G  F  S  W  K  V  I  I  S  Y  K  S  T  E  L  P  D  R  D  V  S  V  P  P  F  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9430" stop="9732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLVNYPLISSNKRSLSNGKCFFQIKSKPYLINSVLELKWGVVSRHCIQRCIVCSMAFVDGCCPISASNTGTQGSGFSWKVIISYKSTELPDRDVSVPPFLE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9455" stop="9712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVTKEASQMASAFSKSKVNHISLTLFLNSNGELYPATVYNVVLSAAWLLSMAAAQLVPAILALRAAASLGRSSSAINPLNCLTAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="10277" PGL_stop="9391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10277" e_stop="9996"/>
            <exon e_start="9907" e_stop="9391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.861" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10277" e_stop="9996" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.861" acc_prob="0.996">
            <gDNA_intron_boundary i_start="9995" i_stop="9908" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="9907" e_stop="9391" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10277" stop="9996"/>
              <exon start="9907" stop="9454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10262" stop="9996"/>
              <exon start="9907" stop="9772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10256" stop="9996"/>
              <exon start="9907" stop="9806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10212" stop="9996"/>
              <exon start="9907" stop="9391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10211" stop="9996"/>
              <exon start="9907" stop="9487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAAACAGCAAAAAGTAATAAAAATGCTTAGTGTAAGTATGAATCTGTTGATGATGAGGCTGTGTTTGTTTCTGTTCCTTGTTTCCAAATTATGCAATGGTTACTCAACAAAGTTGAATTTCTATCCTCCAACTTGTCAAAGAATTGAATGCCCAAATTATGATTTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACGATTCCCCTATGTGGATGTCTACTGCTCCTATTGATGATATTTCATATGTTTCCGCCACCAGAACTGGTTTCCTCAG : GCTATTTGATTACATTCAAGGGAAGAATAAGTACCATGAGACAGTAAAGATGACAGCTCCAGTTATCATTCAAGTGAAGCCAAGTGATGGACCTTTTTGTGCTTCTTCATTTGTTGTGAGTTTTTATGTACCAAAGAAGAACCAGCCAAATCCTCCTCCAGCTAAAGGCCTTCATCTCCAGAAATGGGGGGACACTTACGTCGCGGTCAGGCAATTCAGTGGATTTATAGCTGATGATGACCTTCCAAGAGAAGCCGCTGCCCTGAGTGCCAGTATTGCTGGCACTAATTGGGCAGCAGCCATCGACAAAAGCCATGCTGCAGACAATACAACGTTGTATACAGTGGCGGGATACAACTCCCCATTTGAGTTCAAGAACAGAGTTAATGAGATATGGTTTACTTTTGATTTGGAAAAAGCACTTGCCATTTGAGAGGCTTCTTTTGTTACTACTTATCAAAGGATAGTTGACAAGTCCCTAGTAATTTTGTATGAACAGAATGCTACATTATATATT</gDNA_template>
            <first_frame> I  K  T  A  K  S  N  K  N  A  *  C  K  Y  E  S  V  D  D  E  A  V  F  V  S  V  P  C  F  Q  I  M  Q  W  L  L  N  K  V  E  F  L  S  S  N  L  S  K  N  *  M  P  K  L  *  F  D  *  I  W  K  R  L  *  N  S  S  L  R  F  P  Y  V  D  V  Y  C  S  Y  *  *  Y  F  I  C  F  R  H  Q  N  W  F  P  Q  :  A  I  *  L  H  S  R  E  E  *  V  P  *  D  S  K  D  D  S  S  S  Y  H  S  S  E  A  K  *  W  T  F  L  C  F  F  I  C  C  E  F  L  C  T  K  E  E  P  A  K  S  S  S  S  *  R  P  S  S  P  E  M  G  G  H  L  R  R  G  Q  A  I  Q  W  I  Y  S  *  *  *  P  S  K  R  S  R  C  P  E  C  Q  Y  C  W  H  *  L  G  S  S  H  R  Q  K  P  C  C  R  Q  Y  N  V  V  Y  S  G  G  I  Q  L  P  I  *  V  Q  E  Q  S  *  *  D  M  V  Y  F  *  F  G  K  S  T  C  H  L  R  G  F  F  C  Y  Y  L  S  K  D  S  *  Q  V  P  S  N  F  V  *  T  E  C  Y  I  I  Y  </first_frame>
            <second_frame>  L  K  Q  Q  K  V  I  K  M  L  S  V  S  M  N  L  L  M  M  R  L  C  L  F  L  F  L  V  S  K  L  C  N  G  Y  S  T  K  L  N  F  Y  P  P  T  C  Q  R  I  E  C  P  N  Y  D  L  I  E  S  G  K  D  Y  E  I  R  R  Y  D  S  P  M  W  M  S  T  A  P  I  D  D  I  S  Y  V  S  A  T  R  T  G  F  L  R :   L  F  D  Y  I  Q  G  K  N  K  Y  H  E  T  V  K  M  T  A  P  V  I  I  Q  V  K  P  S  D  G  P  F  C  A  S  S  F  V  V  S  F  Y  V  P  K  K  N  Q  P  N  P  P  P  A  K  G  L  H  L  Q  K  W  G  D  T  Y  V  A  V  R  Q  F  S  G  F  I  A  D  D  D  L  P  R  E  A  A  A  L  S  A  S  I  A  G  T  N  W  A  A  A  I  D  K  S  H  A  A  D  N  T  T  L  Y  T  V  A  G  Y  N  S  P  F  E  F  K  N  R  V  N  E  I  W  F  T  F  D  L  E  K  A  L  A  I  *  E  A  S  F  V  T  T  Y  Q  R  I  V  D  K  S  L  V  I  L  Y  E  Q  N  A  T  L  Y  I </second_frame>
            <third_frame>   *  N  S  K  K  *  *  K  C  L  V  *  V  *  I  C  *  *  *  G  C  V  C  F  C  S  L  F  P  N  Y  A  M  V  T  Q  Q  S  *  I  S  I  L  Q  L  V  K  E  L  N  A  Q  I  M  I  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  L  L  L  M  I  F  H  M  F  P  P  P  E  L  V  S  S   : G  Y  L  I  T  F  K  G  R  I  S  T  M  R  Q  *  R  *  Q  L  Q  L  S  F  K  *  S  Q  V  M  D  L  F  V  L  L  H  L  L  *  V  F  M  Y  Q  R  R  T  S  Q  I  L  L  Q  L  K  A  F  I  S  R  N  G  G  T  L  T  S  R  S  G  N  S  V  D  L  *  L  M  M  T  F  Q  E  K  P  L  P  *  V  P  V  L  L  A  L  I  G  Q  Q  P  S  T  K  A  M  L  Q  T  I  Q  R  C  I  Q  W  R  D  T  T  P  H  L  S  S  R  T  E  L  M  R  Y  G  L  L  L  I  W  K  K  H  L  P  F  E  R  L  L  L  L  L  L  I  K  G  *  L  T  S  P  *  *  F  C  M  N  R  M  L  H  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10276" stop="9996"/>
                    <exon start="9907" stop="9475"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKQQKVIKMLSVSMNLLMMRLCLFLFLVSKLCNGYSTKLNFYPPTCQRIECPNYDLIESGKDYEIRRYDSPMWMSTAPIDDISYVSATRTGFLRLFDYIQGKNKYHETVKMTAPVIIQVKPSDGPFCASSFVVSFYVPKKNQPNPPPAKGLHLQKWGDTYVAVRQFSGFIADDDLPREAAALSASIAGTNWAAAIDKSHAADNTTLYTVAGYNSPFEFKNRVNEIWFTFDLEKALAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="20620" PGL_stop="24050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20620" e_stop="22792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20620" e_stop="22792" e_length="2173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20620" stop="21130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20635" stop="21173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20646" stop="21292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20646" stop="21231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="21191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="21136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20653" stop="21047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20656" stop="21324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20658" stop="21227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20676" stop="21226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20709" stop="21230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20735" stop="21047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20754" stop="21488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20933" stop="21693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20956" stop="21726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20979" stop="21692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21006" stop="21739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21006" stop="21535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21558" stop="22087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21587" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21648" stop="22119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21706" stop="22448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21733" stop="22248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21793" stop="22283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21793" stop="22257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21819" stop="22451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22025" stop="22783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22026" stop="22792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22026" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22043" stop="22712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368934" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22301" stop="22750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22310" stop="22609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22345" stop="22719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22374" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221895" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22378" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221497" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCCCTCCTTTGAGTTTAGCTCCTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTATTTGGAGCTCTATTTAGTATGACTAAGATTAA</gDNA_template>
            <first_frame> W  P  S  F  E  F  S  S  S  T  T  M  S  S  A  S  P  S  P  V  F  S  I  T  L  P  P  S  S  S  K  S  S  T  L  L  P  K  S  T  F  T  F  H  N  H  P  K  K  A  S  P  L  H  L  T  H  T  Q  H  H  S  R  F  T  V  S  N  V  I  L  S  T  T  T  H  D  D  V  S  E  P  E  I  F  V  S  R  F  A  P  D  E  P  R  K  G  C  D  V  L  V  E  A  L  E  R  E  G  V  K  D  V  F  A  Y  P  G  G  A  S  M  E  I  H  Q  A  L  T  R  S  N  I  I  R  N  V  L  P  R  H  E  Q  G  G  V  F  A  A  E  G  Y  A  R  A  T  G  F  P  G  V  C  I  A  T  S  G  P  G  A  T  N  L  V  S  G  L  A  D  A  L  L  D  S  I  P  I  V  A  I  T  G  Q  V  P  R  R  M  I  G  T  D  A  F  Q  E  T  P  I  V  E  V  T  R  S  I  T  K  H  N  Y  L  V  M  D  V  E  D  I  P  R  V  V  R  E  A  F  F  L  A  K  S  G  R  P  G  P  V  L  I  D  V  P  K  D  I  Q  Q  Q  L  V  I  P  N  W  D  Q  P  M  R  L  P  G  Y  M  S  R  L  P  K  L  P  N  E  M  L  L  E  Q  I  V  R  L  I  S  E  S  K  K  P  V  L  Y  V  G  G  G  C  S  Q  S  S  E  E  L  R  R  F  V  E  L  T  G  I  P  V  A  S  T  L  M  G  L  G  A  F  P  S  G  D  E  L  S  L  Q  M  L  G  M  H  G  T  V  Y  A  N  Y  A  V  D  S  S  D  L  L  L  A  F  G  V  R  F  D  D  R  V  T  G  K  L  E  A  F  A  S  R  A  K  I  V  H  I  D  I  D  S  A  E  I  G  K  N  K  Q  P  H  V  S  I  C  A  D  I  K  L  A  L  Q  G  L  N  S  I  F  E  S  K  K  G  K  L  K  L  D  F  S  A  W  R  Q  E  L  T  E  Q  K  V  K  Y  P  L  N  F  K  T  F  G  E  A  I  P  P  Q  Y  A  I  Q  V  L  D  E  L  T  N  G  N  A  I  I  S  T  G  V  G  Q  H  Q  M  W  A  A  Q  H  Y  K  Y  K  K  P  R  Q  W  L  T  S  G  G  L  G  A  M  G  F  G  L  P  A  A  I  G  A  A  V  G  R  P  G  E  I  V  V  D  I  D  G  D  G  S  F  I  M  N  V  Q  E  L  A  T  I  K  V  E  N  L  P  V  K  I  M  L  L  N  N  Q  H  L  G  M  V  V  Q  W  E  D  R  F  Y  K  A  N  R  A  H  T  Y  L  G  N  P  A  N  E  E  E  I  F  P  N  M  L  K  F  A  E  A  C  G  V  P  A  A  R  V  S  H  R  D  D  L  R  A  A  I  Q  K  M  L  D  T  P  G  P  Y  L  L  D  V  I  V  P  H  Q  E  H  V  L  P  M  I  P  S  G  G  A  F  K  D  V  I  T  E  G  D  G  R  R  S  Y  *  L  *  E  A  T  *  L  V  Q  G  I  V  L  S  K  I  N  L  I  F  M  F  T  *  K  F  F  I  V  *  R  I  L  E  F  L  V  L  L  A  A  P  I  K  Y  L  E  L  Y  L  V  *  L  R  L  </first_frame>
            <second_frame>  G  P  P  L  S  L  A  P  L  Q  Q  C  R  L  H  L  H  L  L  F  F  P  L  P  Y  L  H  L  H  Q  N  L  P  P  F  F  P  N  L  P  L  L  S  T  I  T  L  K  K  H  H  P  F  T  L  H  T  P  N  I  I  A  V  S  L  F  Q  M  S  S  Y  Q  P  R  R  M  T  T  F  L  N  P  K  S  L  F  P  V  S  P  L  T  N  P  E  R  V  V  M  F  L  W  R  H  L  K  G  K  G  L  R  M  C  L  H  T  Q  E  V  L  P  W  R  F  I  R  L  *  H  V  Q  I  L  F  V  M  C  C  H  V  M  N  R  V  V  C  L  L  Q  R  V  T  H  G  L  L  G  S  L  V  F  V  L  L  H  L  V  R  E  L  R  I  L  L  A  V  L  L  M  L  C  W  I  V  S  R  L  L  L  L  P  V  K  C  R  G  G  *  L  V  L  M  R  F  R  K  L  L  L  L  R  *  R  D  P  L  R  S  I  I  I  L  L  W  M  *  R  I  F  L  G  L  F  V  K  R  F  F  *  R  N  Q  D  G  L  D  L  F  *  L  M  F  L  R  I  F  S  N  N  W  *  Y  L  I  G  I  S  Q  *  G  C  L  V  T  C  L  G  C  L  N  Y  L  M  R  C  F  W  N  K  L  L  G  *  F  Q  S  Q  R  S  L  F  C  M  W  V  V  G  V  H  S  R  V  R  S  *  D  A  L  W  S  L  R  V  F  L  W  R  V  L  *  W  V  L  E  L  F  Q  V  G  M  S  F  L  F  K  C  W  V  C  M  G  L  C  M  L  I  M  R  W  I  V  V  I  C  C  L  H  L  G  *  G  L  M  I  E  L  L  V  N  W  K  L  L  L  A  E  L  R  L  S  I  L  I  L  I  R  L  R  L  E  R  T  S  N  L  M  F  P  S  V  Q  I  S  S  W  H  Y  R  V  *  I  P  Y  S  R  V  K  K  V  S  *  S  W  T  F  L  L  G  G  R  S  *  R  S  R  R  *  S  T  H  *  I  L  R  L  S  V  K  P  S  L  P  N  M  L  F  R  F  L  M  S  *  L  T  E  M  P  S  L  V  L  V  W  G  N  T  K  C  G  L  P  N  T  T  S  T  K  S  H  A  N  G  L  H  L  V  D  *  E  Q  W  D  L  V  C  L  L  L  *  V  R  L  L  E  D  R  V  R  L  W  L  I  L  M  V  M  G  V  L  S  *  M  C  R  S  W  Q  Q  L  R  W  R  I  S  Q  L  R  L  C  C  *  I  I  N  T  W  E  W  W  F  S  G  R  I  D  S  I  R  L  T  E  H  T  L  T  W  V  I  L  L  M  R  K  R  S  S  L  I  C  *  N  L  Q  R  L  V  A  Y  L  L  Q  E  C  H  T  G  M  I  L  E  L  P  F  K  R  C  *  T  L  L  G  H  T  C  W  M  *  L  Y  L  I  R  S  M  F  Y  R  *  F  P  V  A  V  L  S  K  M  *  L  R  R  V  M  G  D  V  P  I  D  F  E  K  L  H  N  *  F  K  A  L  Y  Y  L  K  *  T  *  Y  L  C  L  L  K  S  F  S  L  C  E  G  F  *  N  F  L  F  Y  W  Q  H  Q  L  S  I  W  S  S  I  *  Y  D  *  D  * </second_frame>
            <third_frame>   A  L  L  *  V  *  L  L  Y  N  N  V  V  C  I  S  I  S  C  F  F  H  Y  P  T  S  I  F  I  K  I  F  H  P  S  S  Q  I  Y  L  Y  F  P  Q  S  P  *  K  S  I  T  P  S  P  Y  T  H  P  T  S  *  P  F  H  C  F  K  C  H  P  I  N  H  D  A  *  R  R  F  *  T  R  N  L  C  F  P  F  R  P  *  R  T  Q  K  G  L  *  C  S  C  G  G  T  *  K  G  R  G  *  G  C  V  C  I  P  R  R  C  F  H  G  D  S  S  G  F  D  T  F  K  Y  Y  S  *  C  A  A  T  S  *  T  G  W  C  V  C  C  R  G  L  R  T  G  Y  W  V  P  W  C  L  Y  C  Y  I  W  S  G  S  Y  E  S  C  *  R  S  C  *  C  F  V  G  *  Y  P  D  C  C  Y  Y  R  S  S  A  E  E  D  D  W  Y  *  C  V  S  G  N  S  Y  C  *  G  N  E  I  H  Y  E  A  *  L  S  C  Y  G  C  R  G  Y  S  *  G  C  S  *  S  V  F  S  S  E  I  R  T  A  W  T  C  F  D  *  C  S  *  G  Y  S  A  T  I  G  D  T  *  L  G  S  A  N  E  V  A  W  L  H  V  *  V  A  *  I  T  *  *  D  A  F  G  T  N  C  *  A  D  F  R  V  K  E  A  C  F  V  C  G  W  W  V  F  T  V  E  *  G  A  E  T  L  C  G  A  Y  G  Y  S  C  G  E  Y  F  D  G  S  W  S  F  S  K  W  G  *  A  F  S  S  N  V  G  Y  A  W  D  C  V  C  *  L  C  G  G  *  *  *  F  V  A  C  I  W  G  E  V  *  *  S  S  Y  W  *  I  G  S  F  C  *  P  S  *  D  C  P  Y  *  Y  *  F  G  *  D  W  K  E  Q  A  T  S  C  F  H  L  C  R  Y  Q  V  G  I  T  G  F  E  F  H  I  R  E  *  K  R  *  A  E  V  G  L  F  C  L  E  A  G  V  N  G  A  E  G  E  V  P  I  E  F  *  D  F  R  *  S  H  P  S  P  I  C  Y  S  G  S  *  *  V  N  *  R  K  C  H  H  *  Y  W  C  G  A  T  P  N  V  G  C  P  T  L  Q  V  Q  K  A  T  P  M  A  Y  I  W  W  I  R  S  N  G  I  W  F  A  C  C  Y  R  C  G  C  W  K  T  G  *  D  C  G  *  Y  *  W  *  W  E  F  Y  H  E  C  A  G  V  G  N  N  *  G  G  E  S  P  S  *  D  Y  V  A  E  *  S  T  L  G  N  G  G  S  V  G  G  S  I  L  *  G  *  Q  S  T  H  L  L  G  *  S  C  *  *  G  R  D  L  P  *  Y  A  E  I  C  R  G  L  W  R  T  C  C  K  S  V  T  Q  G  *  S  *  S  C  H  S  K  D  V  R  H  S  W  A  I  L  V  G  C  D  C  T  S  S  G  A  C  S  T  D  D  S  Q  W  R  C  F  Q  R  C  D  Y  G  G  *  W  E  T  F  L  L  T  L  R  S  Y  I  T  S  S  R  H  C  I  I  *  N  K  L  N  I  Y  V  Y  L  K  V  F  H  C  V  K  D  F  R  I  S  C  S  I  G  S  T  N  *  V  F  G  A  L  F  S  M  T  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20620" stop="22626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2004</number_coding_nucleotides>
                  <number_encoded_amino_acids>668</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPSFEFSSSTTMSSASPSPVFSITLPPSSSKSSTLLPKSTFTFHNHPKKASPLHLTHTQHHSRFTVSNVILSTTTHDDVSEPEIFVSRFAPDEPRKGCDVLVEALEREGVKDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPGPVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMGLGAFPSGDELSLQMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSIFESKKGKLKLDFSAWRQELTEQKVKYPLNFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQHYKYKKPRQWLTSGGLGAMGFGLPAAIGAAVGRPGEIVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPANEEEIFPNMLKFAEACGVPAARVSHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20620" e_stop="22760"/>
            <exon e_start="23359" e_stop="23423"/>
            <exon e_start="24019" e_stop="24050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.516" e_score="0.446"/>
          <exon-only e_score="0.406"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20620" e_stop="22760" e_length="2141"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22761" i_stop="23358" i_length="598"/>
          </intron>
          <exon e_serial="2" e_score="0.446">
            <gDNA_exon_boundary e_start="23359" e_stop="23423" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.516">
            <gDNA_intron_boundary i_start="23424" i_stop="24018" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.406">
            <gDNA_exon_boundary e_start="24019" e_stop="24050" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20620" stop="21130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20635" stop="21173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20643" stop="21159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20646" stop="21292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20646" stop="21231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="21191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="21136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20649" stop="20901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20653" stop="21047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20656" stop="21324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20658" stop="21227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20676" stop="21226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20709" stop="21230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20735" stop="21047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20754" stop="21488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20933" stop="21693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20956" stop="21726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20979" stop="21692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21006" stop="21739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21006" stop="21535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21558" stop="22087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21571" stop="22143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21587" stop="22114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21648" stop="22119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21706" stop="22448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21733" stop="22248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21793" stop="22283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21793" stop="22257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21819" stop="22451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22026" stop="22710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22043" stop="22712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368934" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22145" stop="22760"/>
              <exon start="23359" stop="23423"/>
              <exon start="24019" stop="24050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22301" stop="22750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22310" stop="22609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22345" stop="22719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219360" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22374" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221895" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22378" stop="22739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221497" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCCCTCCTTTGAGTTTAGCTCCTCNACAACAATGNCGNCTGCATCTCCATCTCCTGTTTTTTCCANNACCCTACCTCCATCTTCATCAAAATCTTCCACCCTTCTTCCCAAATCTACCTNTACTTTCCACAATCACCCTAAAAAAGCATCACCCCTTCACCTTACACACACCCAACATCATAGCCGTTTCACTGTTTCAAATGTCATCCTATCAACCACGACGCATGACGACGTTTCTGAACCCGAAATCTTTGTTTCCCGTTTCGCCCCTGACGAACCCAGAAAGGGTTGTGATGTTCTTGTGGAGGCACTTGAAAGGGAAGGGGTTAAGGATGTGTTTGCATACCCAGGAGGTGCTTCCATGGAGATTCATCAGGCTTTGACACGTTCAAATATTATTCGTAATGTGCTGCCACGTCATGAACAGGGTGGTGTGTTTGCTGCAGAGGGTTACGCACGGGCTACTGGGTTCCCTGGTGTTTGTATTGCTACATCTGGTCCGGGAGCTACGAATCTTGTTAGCGGTCTTGCTGATGCTTTGTTGGATAGTATCCCGATTGTTGCTATTACCGGTCAAGTGCCGAGGAGGATGATTGGTACTGATGCGTTTCAGGAAACTCCTATTGTTGAGGTAACGAGATCCATTACGAAGCATAATTATCTTGTTATGGATGTAGAGGATATTCCTAGGGTTGTTCGTGAAGCGTTTTTTCTAGCGAAATCAGGACGGCCTGGACCTGTTTTGATTGATGTTCCTAAGGATATTCAGCAACAATTGGTGATACCTAATTGGGATCAGCCAATGAGGTTGCCTGGTTACATGTCTAGGTTGCCTAAATTACCTAATGAGATGCTTTTGGAACAAATTGTTAGGCTGATTTCAGAGTCAAAGAAGCCTGTTTTGTATGTGGGTGGTGGGTGTTCACAGTCGAGTGAGGAGCTGAGACGCTTTGTGGAGCTTACGGGTATTCCTGTGGCGAGTACTTTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTGGGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAAATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTGCAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTAACGGAGCAGAAGGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAGGTTCTTGATGAGTTAACTAACGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTGGTGGATTAGGAGCAATGGGATTTGGTTTGCCTGCTGCTATAGGTGCGGCTGTTGGAAGACCGGGTGAGATTGTGGTTGATATTGATGGTGATGGGAGTTTTATCATGAATGTGCAGGAGTTGGCAACAATTAAGGTGGAGAATCTCCCAGTTAAGATTATGTTGCTGAATAATCAACACTTGGGAATGGTGGTTCAGTGGGAGGATCGATTCTATAAGGCTAACAGAGCACACACTTACTTGGGTAATCCTGCTAATGAGGAAGAGATCTTCCCTAATATGCTGAAATTTGCAGAGGCTTGTGGCGTACCTGCTGCAAGAGTGTCACACAGGGATGATCTTAGAGCTGCCATTCAAAAGATGTTAGACACTCCTGGGCCATACTTGTTGGATGTGATTGTACCTCATCAGGAGCATGTTCTACCGATGATTCCCAGTGGCGGTGCTTTCAAAGATGTGATTACGGAGGGTGATGGGAGACGTTCCTATTGACTTTGAGAAGCTACATAACTAGTTCAAGGCATTGTATTATCTAAAATAAACTTAATATTTATGTTTACTTAAAAGTTTTTCATTGTGTGAAGGATTTTAGAATTTCTTGTTCTATTGGCAGCACCAATTAAGTA : CAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGG : AATTGGCTGAATTTGCAGCCTCCTACTGAAAG</gDNA_template>
            <first_frame> W  P  S  F  E  F  S  S  S  T  T  M  S  S  A  S  P  S  P  V  F  S  I  T  L  P  P  S  S  S  K  S  S  T  L  L  P  K  S  T  F  T  F  H  N  H  P  K  K  A  S  P  L  H  L  T  H  T  Q  H  H  S  R  F  T  V  S  N  V  I  L  S  T  T  T  H  D  D  V  S  E  P  E  I  F  V  S  R  F  A  P  D  E  P  R  K  G  C  D  V  L  V  E  A  L  E  R  E  G  V  K  D  V  F  A  Y  P  G  G  A  S  M  E  I  H  Q  A  L  T  R  S  N  I  I  R  N  V  L  P  R  H  E  Q  G  G  V  F  A  A  E  G  Y  A  R  A  T  G  F  P  G  V  C  I  A  T  S  G  P  G  A  T  N  L  V  S  G  L  A  D  A  L  L  D  S  I  P  I  V  A  I  T  G  Q  V  P  R  R  M  I  G  T  D  A  F  Q  E  T  P  I  V  E  V  T  R  S  I  T  K  H  N  Y  L  V  M  D  V  E  D  I  P  R  V  V  R  E  A  F  F  L  A  K  S  G  R  P  G  P  V  L  I  D  V  P  K  D  I  Q  Q  Q  L  V  I  P  N  W  D  Q  P  M  R  L  P  G  Y  M  S  R  L  P  K  L  P  N  E  M  L  L  E  Q  I  V  R  L  I  S  E  S  K  K  P  V  L  Y  V  G  G  G  C  S  Q  S  S  E  E  L  R  R  F  V  E  L  T  G  I  P  V  A  S  T  L  M  G  L  G  A  F  P  S  G  D  E  L  S  L  Q  M  L  G  M  H  G  T  V  Y  A  N  Y  A  V  D  S  S  D  L  L  L  A  F  G  V  R  F  D  D  R  V  T  G  K  L  E  A  F  A  S  R  A  K  I  V  H  I  D  I  D  S  A  E  I  G  K  N  K  Q  P  H  V  S  I  C  A  D  I  K  L  A  L  Q  G  L  N  S  I  F  E  S  K  K  G  K  L  K  L  D  F  S  A  W  R  Q  E  L  T  E  Q  K  V  K  Y  P  L  N  F  K  T  F  G  E  A  I  P  P  Q  Y  A  I  Q  V  L  D  E  L  T  N  G  N  A  I  I  S  T  G  V  G  Q  H  Q  M  W  A  A  Q  H  Y  K  Y  K  K  P  R  Q  W  L  T  S  G  G  L  G  A  M  G  F  G  L  P  A  A  I  G  A  A  V  G  R  P  G  E  I  V  V  D  I  D  G  D  G  S  F  I  M  N  V  Q  E  L  A  T  I  K  V  E  N  L  P  V  K  I  M  L  L  N  N  Q  H  L  G  M  V  V  Q  W  E  D  R  F  Y  K  A  N  R  A  H  T  Y  L  G  N  P  A  N  E  E  E  I  F  P  N  M  L  K  F  A  E  A  C  G  V  P  A  A  R  V  S  H  R  D  D  L  R  A  A  I  Q  K  M  L  D  T  P  G  P  Y  L  L  D  V  I  V  P  H  Q  E  H  V  L  P  M  I  P  S  G  G  A  F  K  D  V  I  T  E  G  D  G  R  R  S  Y  *  L  *  E  A  T  *  L  V  Q  G  I  V  L  S  K  I  N  L  I  F  M  F  T  *  K  F  F  I  V  *  R  I  L  E  F  L  V  L  L  A  A  P  I  K  Y :   N  N  T  Y  R  R  W  K  R  E  R  C  R  K  W  E  K  F  H  K  W   : E  L  A  E  F  A  A  S  Y  *  K </first_frame>
            <second_frame>  G  P  P  L  S  L  A  P  L  Q  Q  C  R  L  H  L  H  L  L  F  F  P  L  P  Y  L  H  L  H  Q  N  L  P  P  F  F  P  N  L  P  L  L  S  T  I  T  L  K  K  H  H  P  F  T  L  H  T  P  N  I  I  A  V  S  L  F  Q  M  S  S  Y  Q  P  R  R  M  T  T  F  L  N  P  K  S  L  F  P  V  S  P  L  T  N  P  E  R  V  V  M  F  L  W  R  H  L  K  G  K  G  L  R  M  C  L  H  T  Q  E  V  L  P  W  R  F  I  R  L  *  H  V  Q  I  L  F  V  M  C  C  H  V  M  N  R  V  V  C  L  L  Q  R  V  T  H  G  L  L  G  S  L  V  F  V  L  L  H  L  V  R  E  L  R  I  L  L  A  V  L  L  M  L  C  W  I  V  S  R  L  L  L  L  P  V  K  C  R  G  G  *  L  V  L  M  R  F  R  K  L  L  L  L  R  *  R  D  P  L  R  S  I  I  I  L  L  W  M  *  R  I  F  L  G  L  F  V  K  R  F  F  *  R  N  Q  D  G  L  D  L  F  *  L  M  F  L  R  I  F  S  N  N  W  *  Y  L  I  G  I  S  Q  *  G  C  L  V  T  C  L  G  C  L  N  Y  L  M  R  C  F  W  N  K  L  L  G  *  F  Q  S  Q  R  S  L  F  C  M  W  V  V  G  V  H  S  R  V  R  S  *  D  A  L  W  S  L  R  V  F  L  W  R  V  L  *  W  V  L  E  L  F  Q  V  G  M  S  F  L  F  K  C  W  V  C  M  G  L  C  M  L  I  M  R  W  I  V  V  I  C  C  L  H  L  G  *  G  L  M  I  E  L  L  V  N  W  K  L  L  L  A  E  L  R  L  S  I  L  I  L  I  R  L  R  L  E  R  T  S  N  L  M  F  P  S  V  Q  I  S  S  W  H  Y  R  V  *  I  P  Y  S  R  V  K  K  V  S  *  S  W  T  F  L  L  G  G  R  S  *  R  S  R  R  *  S  T  H  *  I  L  R  L  S  V  K  P  S  L  P  N  M  L  F  R  F  L  M  S  *  L  T  E  M  P  S  L  V  L  V  W  G  N  T  K  C  G  L  P  N  T  T  S  T  K  S  H  A  N  G  L  H  L  V  D  *  E  Q  W  D  L  V  C  L  L  L  *  V  R  L  L  E  D  R  V  R  L  W  L  I  L  M  V  M  G  V  L  S  *  M  C  R  S  W  Q  Q  L  R  W  R  I  S  Q  L  R  L  C  C  *  I  I  N  T  W  E  W  W  F  S  G  R  I  D  S  I  R  L  T  E  H  T  L  T  W  V  I  L  L  M  R  K  R  S  S  L  I  C  *  N  L  Q  R  L  V  A  Y  L  L  Q  E  C  H  T  G  M  I  L  E  L  P  F  K  R  C  *  T  L  L  G  H  T  C  W  M  *  L  Y  L  I  R  S  M  F  Y  R  *  F  P  V  A  V  L  S  K  M  *  L  R  R  V  M  G  D  V  P  I  D  F  E  K  L  H  N  *  F  K  A  L  Y  Y  L  K  *  T  *  Y  L  C  L  L  K  S  F  S  L  C  E  G  F  *  N  F  L  F  Y  W  Q  H  Q  L  S   : T  T  T  P  T  E  D  G  K  E  N  G  A  G  N  G  K  S  F  T  N  G  :  N  W  L  N  L  Q  P  P  T  E   </second_frame>
            <third_frame>   A  L  L  *  V  *  L  L  Y  N  N  V  V  C  I  S  I  S  C  F  F  H  Y  P  T  S  I  F  I  K  I  F  H  P  S  S  Q  I  Y  L  Y  F  P  Q  S  P  *  K  S  I  T  P  S  P  Y  T  H  P  T  S  *  P  F  H  C  F  K  C  H  P  I  N  H  D  A  *  R  R  F  *  T  R  N  L  C  F  P  F  R  P  *  R  T  Q  K  G  L  *  C  S  C  G  G  T  *  K  G  R  G  *  G  C  V  C  I  P  R  R  C  F  H  G  D  S  S  G  F  D  T  F  K  Y  Y  S  *  C  A  A  T  S  *  T  G  W  C  V  C  C  R  G  L  R  T  G  Y  W  V  P  W  C  L  Y  C  Y  I  W  S  G  S  Y  E  S  C  *  R  S  C  *  C  F  V  G  *  Y  P  D  C  C  Y  Y  R  S  S  A  E  E  D  D  W  Y  *  C  V  S  G  N  S  Y  C  *  G  N  E  I  H  Y  E  A  *  L  S  C  Y  G  C  R  G  Y  S  *  G  C  S  *  S  V  F  S  S  E  I  R  T  A  W  T  C  F  D  *  C  S  *  G  Y  S  A  T  I  G  D  T  *  L  G  S  A  N  E  V  A  W  L  H  V  *  V  A  *  I  T  *  *  D  A  F  G  T  N  C  *  A  D  F  R  V  K  E  A  C  F  V  C  G  W  W  V  F  T  V  E  *  G  A  E  T  L  C  G  A  Y  G  Y  S  C  G  E  Y  F  D  G  S  W  S  F  S  K  W  G  *  A  F  S  S  N  V  G  Y  A  W  D  C  V  C  *  L  C  G  G  *  *  *  F  V  A  C  I  W  G  E  V  *  *  S  S  Y  W  *  I  G  S  F  C  *  P  S  *  D  C  P  Y  *  Y  *  F  G  *  D  W  K  E  Q  A  T  S  C  F  H  L  C  R  Y  Q  V  G  I  T  G  F  E  F  H  I  R  E  *  K  R  *  A  E  V  G  L  F  C  L  E  A  G  V  N  G  A  E  G  E  V  P  I  E  F  *  D  F  R  *  S  H  P  S  P  I  C  Y  S  G  S  *  *  V  N  *  R  K  C  H  H  *  Y  W  C  G  A  T  P  N  V  G  C  P  T  L  Q  V  Q  K  A  T  P  M  A  Y  I  W  W  I  R  S  N  G  I  W  F  A  C  C  Y  R  C  G  C  W  K  T  G  *  D  C  G  *  Y  *  W  *  W  E  F  Y  H  E  C  A  G  V  G  N  N  *  G  G  E  S  P  S  *  D  Y  V  A  E  *  S  T  L  G  N  G  G  S  V  G  G  S  I  L  *  G  *  Q  S  T  H  L  L  G  *  S  C  *  *  G  R  D  L  P  *  Y  A  E  I  C  R  G  L  W  R  T  C  C  K  S  V  T  Q  G  *  S  *  S  C  H  S  K  D  V  R  H  S  W  A  I  L  V  G  C  D  C  T  S  S  G  A  C  S  T  D  D  S  Q  W  R  C  F  Q  R  C  D  Y  G  G  *  W  E  T  F  L  L  T  L  R  S  Y  I  T  S  S  R  H  C  I  I  *  N  K  L  N  I  Y  V  Y  L  K  V  F  H  C  V  K  D  F  R  I  S  C  S  I  G  S  T  N  *  V  :  Q  Q  H  L  Q  K  M  E  K  R  T  V  Q  E  M  G  K  V  S  Q  M  G :   I  G  *  I  C  S  L  L  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20620" stop="22626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2004</number_coding_nucleotides>
                  <number_encoded_amino_acids>668</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPSFEFSSSTTMSSASPSPVFSITLPPSSSKSSTLLPKSTFTFHNHPKKASPLHLTHTQHHSRFTVSNVILSTTTHDDVSEPEIFVSRFAPDEPRKGCDVLVEALEREGVKDVFAYPGGASMEIHQALTRSNIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSIPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLAKSGRPGPVLIDVPKDIQQQLVIPNWDQPMRLPGYMSRLPKLPNEMLLEQIVRLISESKKPVLYVGGGCSQSSEELRRFVELTGIPVASTLMGLGAFPSGDELSLQMLGMHGTVYANYAVDSSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSICADIKLALQGLNSIFESKKGKLKLDFSAWRQELTEQKVKYPLNFKTFGEAIPPQYAIQVLDELTNGNAIISTGVGQHQMWAAQHYKYKKPRQWLTSGGLGAMGFGLPAAIGAAVGRPGEIVVDIDGDGSFIMNVQELATIKVENLPVKIMLLNNQHLGMVVQWEDRFYKANRAHTYLGNPANEEEIFPNMLKFAEACGVPAARVSHRDDLRAAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="23135" e_stop="23759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="23135" e_stop="23759" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23135" stop="23727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23257" stop="23759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCTTATTCACTGTAAATGTTGGTTTAAGCCTGAATTACCTAGGGGATTCCCCAGGTCGTTTACACAGGGGTTTACATAAGATCAGCTCAGTTCTCCGGAGAAGTTCTAGCAATCTTGGAGAGCCTATTTCATCTCTGCATGTGAATCTTAGGGCAGTTAATGCCAAGGATATCAGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAGCAACAACACCTACAGAAGATGGAAAAGAGAACGGTGCAGGAAATGGGAAAAGTTTCACAAATGGGGCAAGACGAAGAGAATCCTTAAAGATGCTGGCAAATCTGTTGGTGGTGGCATAAAGGAAGTGATGTCTGGGAAGTCATCAGGGAAATCTAAAGAGGAAGTAGAATCATCAGAGACCGAAAGAATGAGCTCTGTGGAATCTGATATTTCTGATGCAGAGTCTCAACCTTCATCAGTTGATTCACCTCCAGTTGTAGCGCCTTCTGTTGACAACAGTTCCACAGCCAGCTCCGGTATTGAGACTTCTCTCTTGATGTAGAATTGTGATATACGCGATGTAATATAAAACATATTTGGTGTTACACTTGGACGAACTTATTTTTCAGTTTTGACCAACA</gDNA_template>
            <first_frame> Y  L  L  I  H  C  K  C  W  F  K  P  E  L  P  R  G  F  P  R  S  F  T  Q  G  F  T  *  D  Q  L  S  S  P  E  K  F  *  Q  S  W  R  A  Y  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  Q  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  S  N  N  T  Y  R  R  W  K  R  E  R  C  R  K  W  E  K  F  H  K  W  G  K  T  K  R  I  L  K  D  A  G  K  S  V  G  G  G  I  K  E  V  M  S  G  K  S  S  G  K  S  K  E  E  V  E  S  S  E  T  E  R  M  S  S  V  E  S  D  I  S  D  A  E  S  Q  P  S  S  V  D  S  P  P  V  V  A  P  S  V  D  N  S  S  T  A  S  S  G  I  E  T  S  L  L  M  *  N  C  D  I  R  D  V  I  *  N  I  F  G  V  T  L  G  R  T  Y  F  S  V  L  T  N  </first_frame>
            <second_frame>  I  F  L  F  T  V  N  V  G  L  S  L  N  Y  L  G  D  S  P  G  R  L  H  R  G  L  H  K  I  S  S  V  L  R  R  S  S  S  N  L  G  E  P  I  S  S  L  H  V  N  L  R  A  V  N  A  K  D  I  R  V  K  I  I  V  D  D  T  I  L  P  S  S  L  A  T  T  P  T  E  D  G  K  E  N  G  A  G  N  G  K  S  F  T  N  G  A  R  R  R  E  S  L  K  M  L  A  N  L  L  V  V  A  *  R  K  *  C  L  G  S  H  Q  G  N  L  K  R  K  *  N  H  Q  R  P  K  E  *  A  L  W  N  L  I  F  L  M  Q  S  L  N  L  H  Q  L  I  H  L  Q  L  *  R  L  L  L  T  T  V  P  Q  P  A  P  V  L  R  L  L  S  *  C  R  I  V  I  Y  A  M  *  Y  K  T  Y  L  V  L  H  L  D  E  L  I  F  Q  F  *  P  T </second_frame>
            <third_frame>   S  S  Y  S  L  *  M  L  V  *  A  *  I  T  *  G  I  P  Q  V  V  Y  T  G  V  Y  I  R  S  A  Q  F  S  G  E  V  L  A  I  L  E  S  L  F  H  L  C  M  *  I  L  G  Q  L  M  P  R  I  S  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  Q  H  L  Q  K  M  E  K  R  T  V  Q  E  M  G  K  V  S  Q  M  G  Q  D  E  E  N  P  *  R  C  W  Q  I  C  W  W  W  H  K  G  S  D  V  W  E  V  I  R  E  I  *  R  G  S  R  I  I  R  D  R  K  N  E  L  C  G  I  *  Y  F  *  C  R  V  S  T  F  I  S  *  F  T  S  S  C  S  A  F  C  *  Q  Q  F  H  S  Q  L  R  Y  *  D  F  S  L  D  V  E  L  *  Y  T  R  C  N  I  K  H  I  W  C  Y  T  W  T  N  L  F  F  S  F  D  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23336" stop="23680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHFAFIISNNTYRRWKRERCRKWEKFHKWGKTKRILKDAGKSVGGGIKEVMSGKSSGKSKEEVESSETERMSSVESDISDAESQPSSVDSPPVVAPSVDNSSTASSGIETSLLM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23136" stop="23477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFTVNVGLSLNYLGDSPGRLHRGLHKISSVLRRSSSNLGEPISSLHVNLRAVNAKDIRVKIIVDDTILPSSLATTPTEDGKENGAGNGKSFTNGARRRESLKMLANLLVVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="22948" PGL_stop="21933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22948" e_stop="22936"/>
            <exon e_start="22731" e_stop="21933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.000" e_score="0.538"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.538">
            <gDNA_exon_boundary e_start="22948" e_stop="22936" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22935" i_stop="22732" i_length="204"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22731" e_stop="21933" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22948" stop="22936"/>
              <exon start="22731" stop="22465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22948" stop="22936"/>
              <exon start="22731" stop="22469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22947" stop="22936"/>
              <exon start="22731" stop="22373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22700" stop="21933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTGATTTTG : AAATTCTAAAATCCTTCACACAATGAAAAACTTTTAAGTAAACATAAATATTAAGTTTATTTTAGATAATACAATGCCTTGAACTAGTTATGTAGCTTCTCAAAGTCAATAGGAACGTCTCCCATCACCCTCCGTAATCACATCTTTGAAAGCACCGCCACTGGGAATCATCGGTAGAACATGCTCCTGATGAGGTACAATCACATCCAACAAGTATGGCCCAGGAGTGTCTAACATCTTTTGAATGGCAGCTCTAAGATCATCCCTGTGTGACACTCTTGCAGCAGGTACGCCACAAGCCTCTGCAAATTTCAGCATATTAGGGAAGATCTCTTCCTCATTAGCAGGATTACCCAAGTAAGTGTGTGCTCTGTTAGCCTTATAGAATCGATCCTCCCACTGAACCACCATTCCCAAGTGTTGATTATTCAGCAACATAATCTTAACTGGGAGATTCTCCACCTTAATTGTTGCCAACTCCTGCACATTCATGATAAAACTCCCATCACCATCAATATCAACCACAATCTCACCCGGTCTTCCAACAGCCGCACCTATAGCAGCAGGCAAACCAAATCCCATTGCTCCTAATCCACCAGATGTAAGCCATTGGCGTGGCTTTTTGTACTTGTAGTGTTGGGCAGCCCACATTTGGTGTTGCCCCACACCAGTACTAATGATGGCATTTCCGTTAGTTAACTCATCAAGAACCTGAATAGCATATTGGGGAGGGATGGCTTCACCGAAAGTCTTAAAATTCAATGGGTACTTCACCTTCTGCTCCGTTAACTCCTGCCTC</gDNA_template>
            <first_frame> *  S  D  F   : E  I  L  K  S  F  T  Q  *  K  T  F  K  *  T  *  I  L  S  L  F  *  I  I  Q  C  L  E  L  V  M  *  L  L  K  V  N  R  N  V  S  H  H  P  P  *  S  H  L  *  K  H  R  H  W  E  S  S  V  E  H  A  P  D  E  V  Q  S  H  P  T  S  M  A  Q  E  C  L  T  S  F  E  W  Q  L  *  D  H  P  C  V  T  L  L  Q  Q  V  R  H  K  P  L  Q  I  S  A  Y  *  G  R  S  L  P  H  *  Q  D  Y  P  S  K  C  V  L  C  *  P  Y  R  I  D  P  P  T  E  P  P  F  P  S  V  D  Y  S  A  T  *  S  *  L  G  D  S  P  P  *  L  L  P  T  P  A  H  S  *  *  N  S  H  H  H  Q  Y  Q  P  Q  S  H  P  V  F  Q  Q  P  H  L  *  Q  Q  A  N  Q  I  P  L  L  L  I  H  Q  M  *  A  I  G  V  A  F  C  T  C  S  V  G  Q  P  T  F  G  V  A  P  H  Q  Y  *  *  W  H  F  R  *  L  T  H  Q  E  P  E  *  H  I  G  E  G  W  L  H  R  K  S  *  N  S  M  G  T  S  P  S  A  P  L  T  P  A   </first_frame>
            <second_frame>  N  L  I  L  :  K  F  *  N  P  S  H  N  E  K  L  L  S  K  H  K  Y  *  V  Y  F  R  *  Y  N  A  L  N  *  L  C  S  F  S  K  S  I  G  T  S  P  I  T  L  R  N  H  I  F  E  S  T  A  T  G  N  H  R  *  N  M  L  L  M  R  Y  N  H  I  Q  Q  V  W  P  R  S  V  *  H  L  L  N  G  S  S  K  I  I  P  V  *  H  S  C  S  R  Y  A  T  S  L  C  K  F  Q  H  I  R  E  D  L  F  L  I  S  R  I  T  Q  V  S  V  C  S  V  S  L  I  E  S  I  L  P  L  N  H  H  S  Q  V  L  I  I  Q  Q  H  N  L  N  W  E  I  L  H  L  N  C  C  Q  L  L  H  I  H  D  K  T  P  I  T  I  N  I  N  H  N  L  T  R  S  S  N  S  R  T  Y  S  S  R  Q  T  K  S  H  C  S  *  S  T  R  C  K  P  L  A  W  L  F  V  L  V  V  L  G  S  P  H  L  V  L  P  H  T  S  T  N  D  G  I  S  V  S  *  L  I  K  N  L  N  S  I  L  G  R  D  G  F  T  E  S  L  K  I  Q  W  V  L  H  L  L  L  R  *  L  L  P  </second_frame>
            <third_frame>   I  *  F  * :   N  S  K  I  L  H  T  M  K  N  F  *  V  N  I  N  I  K  F  I  L  D  N  T  M  P  *  T  S  Y  V  A  S  Q  S  Q  *  E  R  L  P  S  P  S  V  I  T  S  L  K  A  P  P  L  G  I  I  G  R  T  C  S  *  *  G  T  I  T  S  N  K  Y  G  P  G  V  S  N  I  F  *  M  A  A  L  R  S  S  L  C  D  T  L  A  A  G  T  P  Q  A  S  A  N  F  S  I  L  G  K  I  S  S  S  L  A  G  L  P  K  *  V  C  A  L  L  A  L  *  N  R  S  S  H  *  T  T  I  P  K  C  *  L  F  S  N  I  I  L  T  G  R  F  S  T  L  I  V  A  N  S  C  T  F  M  I  K  L  P  S  P  S  I  S  T  T  I  S  P  G  L  P  T  A  A  P  I  A  A  G  K  P  N  P  I  A  P  N  P  P  D  V  S  H  W  R  G  F  L  Y  L  *  C  W  A  A  H  I  W  C  C  P  T  P  V  L  M  M  A  F  P  L  V  N  S  S  R  T  *  I  A  Y  W  G  G  M  A  S  P  K  V  L  K  F  N  G  Y  F  T  F  C  S  V  N  S  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22458" stop="22141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSCSRYATSLCKFQHIREDLFLISRITQVSVCSVSLIESILPLNHHSQVLIIQQHNLNWEILHLNCCQLLHIHDKTPITININHNLTRSSNSRTYSSRQTKSHCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25578" PGL_stop="24990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25578" e_stop="25567"/>
            <exon e_start="25491" e_stop="24990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25578" e_stop="25567" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.925">
            <gDNA_intron_boundary i_start="25566" i_stop="25492" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25491" e_stop="24990" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25578" stop="25567"/>
              <exon start="25491" stop="25029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25445" stop="24990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202109" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAACAGCCTG : ATATCAGTGGTTACGATTTATGTGTTTCTATACGGTCAGCTCTACATGGTATTAAGTGGTCTACAAAGAGCACTACTAGTTGAGGCAAAACTACAAAACATAAAGTCACTGGAAACAGCTCTAGCTTCTCAATCATTTATCCAGCTTGGACTTTTAACAGGGTTACCAATGGTCATTGAGTTGGGACTAGAGCGCGGTTATCTTAATGCTCTTAAAGATTTTGTTCTGATGCAACTGCAGCTGGCTGCAGTTTTCTTTACTTTCTCCTATGGAACAAAGTCTCATTACTATGGCAGAACAATTCTTCATGGAGGTGCTAAGTATAGACCTACTGGTCGTAAAGTTGTGGTTTTTCATGCCAGCTTCACTGAAAACTATAGACTTTACTCTCGGAGTCACTTCGTCAAAGGATTTGAACTTCTACTCCTGTTGATTGTTTATGATTTGTTTAGACGATCGTATGAGAGCAATTTGGCATATGTTTTAACTACATATGCAATAT</gDNA_template>
            <first_frame> F  N  S  L  :  I  S  V  V  T  I  Y  V  F  L  Y  G  Q  L  Y  M  V  L  S  G  L  Q  R  A  L  L  V  E  A  K  L  Q  N  I  K  S  L  E  T  A  L  A  S  Q  S  F  I  Q  L  G  L  L  T  G  L  P  M  V  I  E  L  G  L  E  R  G  Y  L  N  A  L  K  D  F  V  L  M  Q  L  Q  L  A  A  V  F  F  T  F  S  Y  G  T  K  S  H  Y  Y  G  R  T  I  L  H  G  G  A  K  Y  R  P  T  G  R  K  V  V  V  F  H  A  S  F  T  E  N  Y  R  L  Y  S  R  S  H  F  V  K  G  F  E  L  L  L  L  L  I  V  Y  D  L  F  R  R  S  Y  E  S  N  L  A  Y  V  L  T  T  Y  A  I  </first_frame>
            <second_frame>  S  T  A  * :   Y  Q  W  L  R  F  M  C  F  Y  T  V  S  S  T  W  Y  *  V  V  Y  K  E  H  Y  *  L  R  Q  N  Y  K  T  *  S  H  W  K  Q  L  *  L  L  N  H  L  S  S  L  D  F  *  Q  G  Y  Q  W  S  L  S  W  D  *  S  A  V  I  L  M  L  L  K  I  L  F  *  C  N  C  S  W  L  Q  F  S  L  L  S  P  M  E  Q  S  L  I  T  M  A  E  Q  F  F  M  E  V  L  S  I  D  L  L  V  V  K  L  W  F  F  M  P  A  S  L  K  T  I  D  F  T  L  G  V  T  S  S  K  D  L  N  F  Y  S  C  *  L  F  M  I  C  L  D  D  R  M  R  A  I  W  H  M  F  *  L  H  M  Q  Y </second_frame>
            <third_frame>   Q  Q  P   : D  I  S  G  Y  D  L  C  V  S  I  R  S  A  L  H  G  I  K  W  S  T  K  S  T  T  S  *  G  K  T  T  K  H  K  V  T  G  N  S  S  S  F  S  I  I  Y  P  A  W  T  F  N  R  V  T  N  G  H  *  V  G  T  R  A  R  L  S  *  C  S  *  R  F  C  S  D  A  T  A  A  G  C  S  F  L  Y  F  L  L  W  N  K  V  S  L  L  W  Q  N  N  S  S  W  R  C  *  V  *  T  Y  W  S  *  S  C  G  F  S  C  Q  L  H  *  K  L  *  T  L  L  S  E  S  L  R  Q  R  I  *  T  S  T  P  V  D  C  L  *  F  V  *  T  I  V  *  E  Q  F  G  I  C  F  N  Y  I  C  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25578" stop="25567"/>
                    <exon start="25491" stop="24991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNSLISVVTIYVFLYGQLYMVLSGLQRALLVEAKLQNIKSLETALASQSFIQLGLLTGLPMVIELGLERGYLNALKDFVLMQLQLAAVFFTFSYGTKSHYYGRTILHGGAKYRPTGRKVVVFHASFTENYRLYSRSHFVKGFELLLLLIVYDLFRRSYESNLAYVLTTYAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="62746" PGL_stop="60950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62746" e_stop="61879"/>
            <exon e_start="61805" e_stop="61526"/>
            <exon e_start="60990" e_stop="60950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.412" e_score="0.961"/>
          <exon-only e_score="0.659"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62746" e_stop="61879" e_length="868"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="61805" e_stop="61526" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.412">
            <gDNA_intron_boundary i_start="61525" i_stop="60991" i_length="535"/>
          </intron>
          <exon e_serial="3" e_score="0.659">
            <gDNA_exon_boundary e_start="60990" e_stop="60950" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62746" stop="62131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62735" stop="62340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62732" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62659" stop="62207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62555" stop="62339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62183" stop="61879"/>
              <exon start="61805" stop="61585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62174" stop="61879"/>
              <exon start="61805" stop="61526"/>
              <exon start="60990" stop="60950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374544" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62097" stop="61879"/>
              <exon start="61805" stop="61578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288558" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62094" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62093" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62062" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCATTACCTTCGTTGGAATAGTTTACTCTTGATTTTCGTTCCGCTCTCATTGCCACTTTGAGTTCTTGATTTTTATGATAAGAGTGATTAGTTT : GCTGTTTAAAAAGCAAAAGAAGAACAAGAAAAATGAAAAAT</gDNA_template>
            <first_frame> P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I  T  F  V  G  I  V  Y  S  *  F  S  F  R  S  H  C  H  F  E  F  L  I  F  M  I  R  V  I  S  L :   L  F  K  K  Q  K  K  N  K  K  N  E  K  </first_frame>
            <second_frame>  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P  L  P  S  L  E  *  F  T  L  D  F  R  S  A  L  I  A  T  L  S  S  *  F  L  *  *  E  *  L  V   : C  C  L  K  S  K  R  R  T  R  K  M  K  N </second_frame>
            <third_frame>   N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  Y  L  R  W  N  S  L  L  L  I  F  V  P  L  S  L  P  L  *  V  L  D  F  Y  D  K  S  D  *  F  :  A  V  *  K  A  K  E  E  Q  E  K  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62746" stop="61879"/>
                    <exon start="61805" stop="61768"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62746" e_stop="61879"/>
            <exon e_start="61805" e_stop="61622"/>
            <exon e_start="60990" e_stop="60967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.412" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62746" e_stop="61879" e_length="868"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61805" e_stop="61622" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.412">
            <gDNA_intron_boundary i_start="61621" i_stop="60991" i_length="631"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="60990" e_stop="60967" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62746" stop="62131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62735" stop="62340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62732" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62659" stop="62207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62555" stop="62339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62103" stop="61879"/>
              <exon start="61805" stop="61622"/>
              <exon start="60990" stop="60967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219329" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62102" stop="61879"/>
              <exon start="61805" stop="61622"/>
              <exon start="60990" stop="60967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216226" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62100" stop="61879"/>
              <exon start="61805" stop="61622"/>
              <exon start="60990" stop="60967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62094" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62093" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62062" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTT : GCTGTTTAAAAAGCAAAAGAAGAA</gDNA_template>
            <first_frame> P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L :   L  F  K  K  Q  K  K   </first_frame>
            <second_frame>  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I   : C  C  L  K  S  K  R  R  </second_frame>
            <third_frame>   N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  :  A  V  *  K  A  K  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62746" stop="61879"/>
                    <exon start="61805" stop="61768"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62746" e_stop="61879"/>
            <exon e_start="61805" e_stop="61616"/>
            <exon e_start="60968" e_stop="60951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.970"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62746" e_stop="61879" e_length="868"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.969">
            <gDNA_intron_boundary i_start="61878" i_stop="61806" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="61805" e_stop="61616" e_length="190"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61615" i_stop="60969" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="60968" e_stop="60951" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62746" stop="62131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62741" stop="62076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62735" stop="62340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62734" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62732" stop="62248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62659" stop="62207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62555" stop="62339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62184" stop="61879"/>
              <exon start="61805" stop="61616"/>
              <exon start="60968" stop="60951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219590" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62094" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234254" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62093" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220143" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62062" stop="61879"/>
              <exon start="61805" stop="61638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233999" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAATCCATAGGCTTGCAGTTTGCTCCTTCACTGCAAAAATGGCTACTTCTTCTTCTTTATCTTTCTTTTCTTCCACCATTTTCTTCTCTAACTCCAACACCCTTCACTCCTCAAAGCAGCAGCAGCAGAAACAACTCATTTTCAAACCCAAACAACAACAATTCTCCATCCGTTCAGAGGCCGCCGCCGCCACTATTCCAATTCTGTCCTTTGATGGTACCGAAGTGGGCTCCACCACTCTCAACTTAAAATCCGCCCCTCTTGATACCGCACGCGCCGTCGTTCATCGTGGGCTTACCACTGACCTGCGCAACCAACGTCGCGGTACTGCTTCCACCCTTACCCGAGCCCAAGTACGGGGTGGTGGTATCAAACCATACCCACAAAAGAAAACGGGTCGAGCTCGACGTGGGTCGAACCGAACTCCTTTACGACCAGGTGGTGGGGTTGTGTTTGGGCCGAAACCTAAGGATTGGTCAGTTAAGATTAACAAAAAGGAAAAGAGACTCGCGATTTCTACTGCGCTTTCGAGTGCTACACAGAATGCCATTGTTGTGGAAGAGTTTGATGATAAGTTTGAGAAACCGAAGACTAAGGAGTTCATTGATTTGATGAGAAGATGGGGATTGGACCCAAAAGAGAAATCTTTGTTTTTGATGACGGAAGTTTCAGACAATGTGATTCTCTCCAGCAGAAACATTAGCACATTGAAGATGTTGACACCCAGAACTTTGAATCTTTTCGACATATTGGATTCTGAGAAGCTGGTTTTCACTAAATCAGCTGTGGAGTTCTTGAATGAACGATACGGAAATGATGATGATGATGATGATGACTGGGAGGTGGTGGACGAGGAAGAAGAAGATG : GTGGCGAGGTGGAGGAGAGTGCTGAAAGTTCTGAGTAATATATGAACATGGGGCGAAAAGGGTCTGTTCCATTTTAGAGGAGGCTTTACCTTACAGGGAGCTTAGTATATTTCACTTTGAATTGTATTTTATTGTATGATAAAACTAGGTGATTTTGGTTGATTTCATGTCACTGACTGCATTTGTCCAT : AACAAGAAAAATGAAAAA</gDNA_template>
            <first_frame> P  I  H  R  L  A  V  C  S  F  T  A  K  M  A  T  S  S  S  L  S  F  F  S  S  T  I  F  F  S  N  S  N  T  L  H  S  S  K  Q  Q  Q  Q  K  Q  L  I  F  K  P  K  Q  Q  Q  F  S  I  R  S  E  A  A  A  A  T  I  P  I  L  S  F  D  G  T  E  V  G  S  T  T  L  N  L  K  S  A  P  L  D  T  A  R  A  V  V  H  R  G  L  T  T  D  L  R  N  Q  R  R  G  T  A  S  T  L  T  R  A  Q  V  R  G  G  G  I  K  P  Y  P  Q  K  K  T  G  R  A  R  R  G  S  N  R  T  P  L  R  P  G  G  G  V  V  F  G  P  K  P  K  D  W  S  V  K  I  N  K  K  E  K  R  L  A  I  S  T  A  L  S  S  A  T  Q  N  A  I  V  V  E  E  F  D  D  K  F  E  K  P  K  T  K  E  F  I  D  L  M  R  R  W  G  L  D  P  K  E  K  S  L  F  L  M  T  E  V  S  D  N  V  I  L  S  S  R  N  I  S  T  L  K  M  L  T  P  R  T  L  N  L  F  D  I  L  D  S  E  K  L  V  F  T  K  S  A  V  E  F  L  N  E  R  Y  G  N  D  D  D  D  D  D  D  W  E  V  V  D  E  E  E  E  D   : G  G  E  V  E  E  S  A  E  S  S  E  *  Y  M  N  M  G  R  K  G  S  V  P  F  *  R  R  L  Y  L  T  G  S  L  V  Y  F  T  L  N  C  I  L  L  Y  D  K  T  R  *  F  W  L  I  S  C  H  *  L  H  L  S  I :   T  R  K  M  K   </first_frame>
            <second_frame>  Q  S  I  G  L  Q  F  A  P  S  L  Q  K  W  L  L  L  L  L  Y  L  S  F  L  P  P  F  S  S  L  T  P  T  P  F  T  P  Q  S  S  S  S  R  N  N  S  F  S  N  P  N  N  N  N  S  P  S  V  Q  R  P  P  P  P  L  F  Q  F  C  P  L  M  V  P  K  W  A  P  P  L  S  T  *  N  P  P  L  L  I  P  H  A  P  S  F  I  V  G  L  P  L  T  C  A  T  N  V  A  V  L  L  P  P  L  P  E  P  K  Y  G  V  V  V  S  N  H  T  H  K  R  K  R  V  E  L  D  V  G  R  T  E  L  L  Y  D  Q  V  V  G  L  C  L  G  R  N  L  R  I  G  Q  L  R  L  T  K  R  K  R  D  S  R  F  L  L  R  F  R  V  L  H  R  M  P  L  L  W  K  S  L  M  I  S  L  R  N  R  R  L  R  S  S  L  I  *  *  E  D  G  D  W  T  Q  K  R  N  L  C  F  *  *  R  K  F  Q  T  M  *  F  S  P  A  E  T  L  A  H  *  R  C  *  H  P  E  L  *  I  F  S  T  Y  W  I  L  R  S  W  F  S  L  N  Q  L  W  S  S  *  M  N  D  T  E  M  M  M  M  M  M  M  T  G  R  W  W  T  R  K  K  K  M  :  V  A  R  W  R  R  V  L  K  V  L  S  N  I  *  T  W  G  E  K  G  L  F  H  F  R  G  G  F  T  L  Q  G  A  *  Y  I  S  L  *  I  V  F  Y  C  M  I  K  L  G  D  F  G  *  F  H  V  T  D  C  I  C  P   : *  Q  E  K  *  K  </second_frame>
            <third_frame>   N  P  *  A  C  S  L  L  L  H  C  K  N  G  Y  F  F  F  F  I  F  L  F  F  H  H  F  L  L  *  L  Q  H  P  S  L  L  K  A  A  A  A  E  T  T  H  F  Q  T  Q  T  T  T  I  L  H  P  F  R  G  R  R  R  H  Y  S  N  S  V  L  *  W  Y  R  S  G  L  H  H  S  Q  L  K  I  R  P  S  *  Y  R  T  R  R  R  S  S  W  A  Y  H  *  P  A  Q  P  T  S  R  Y  C  F  H  P  Y  P  S  P  S  T  G  W  W  Y  Q  T  I  P  T  K  E  N  G  S  S  S  T  W  V  E  P  N  S  F  T  T  R  W  W  G  C  V  W  A  E  T  *  G  L  V  S  *  D  *  Q  K  G  K  E  T  R  D  F  Y  C  A  F  E  C  Y  T  E  C  H  C  C  G  R  V  *  *  *  V  *  E  T  E  D  *  G  V  H  *  F  D  E  K  M  G  I  G  P  K  R  E  I  F  V  F  D  D  G  S  F  R  Q  C  D  S  L  Q  Q  K  H  *  H  I  E  D  V  D  T  Q  N  F  E  S  F  R  H  I  G  F  *  E  A  G  F  H  *  I  S  C  G  V  L  E  *  T  I  R  K  *  *  *  *  *  *  *  L  G  G  G  G  R  G  R  R  R  W :   W  R  G  G  G  E  C  *  K  F  *  V  I  Y  E  H  G  A  K  R  V  C  S  I  L  E  E  A  L  P  Y  R  E  L  S  I  F  H  F  E  L  Y  F  I  V  *  *  N  *  V  I  L  V  D  F  M  S  L  T  A  F  V  H  :  N  K  K  N  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62746" stop="61879"/>
                    <exon start="61805" stop="61768"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>903</number_coding_nucleotides>
                  <number_encoded_amino_acids>301</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIHRLAVCSFTAKMATSSSLSFFSSTIFFSNSNTLHSSKQQQQKQLIFKPKQQQFSIRSEAAAATIPILSFDGTEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRAQVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSATQNAIVVEEFDDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTEVSDNVILSSRNISTLKMLTPRTLNLFDILDSEKLVFTKSAVEFLNERYGNDDDDDDDWEVVDEEEEDGGEVEESAESSE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62249" PGL_stop="62733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62249" e_stop="62733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="62249" e_stop="62733" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62249" stop="62733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTGTTAATCTTAACTGACCAATCCTTAGGTTTCGGCCCAAACACAACCCCACCACCTGGTCGTAAAGGAGTTCGGTTCGACCCACGTCGAGCTCGACCCGTTTTCTTTTGTGGGTATGGTTTGATACCACCACCCCGTACTTGGGCTCGGGTAAGGGTGGAAGCAGTACCGCGACGTTGGTTGCGCAGGTCAGTGGTAAGCCCACGATGAACGACGGCGCGTGCGGTATCAAGAGGGGCGGATTTTAAGTTGAGAGTGGTGGAGCCCACTTCGGTACCATCAAAGGACAGAATTGGAATAGTGGCGGCGGCGGCCTCTGAACGGATGGAGAATTGTTGTTGTTTGGGTTTGAAAATGAGTTGTTTCTGCTGCTGCTGCTTTGAGGAGTGAAGGGTGTTGGAGTTAGAGAAGAAAATGGTGGAAGAAAAGAAAGATAAAGAAGAAGAAGTAGCCATTTTTGCAGTGAAGGAGCAAACTGCAA</gDNA_template>
            <first_frame> L  F  V  N  L  N  *  P  I  L  R  F  R  P  K  H  N  P  T  T  W  S  *  R  S  S  V  R  P  T  S  S  S  T  R  F  L  L  W  V  W  F  D  T  T  T  P  Y  L  G  S  G  K  G  G  S  S  T  A  T  L  V  A  Q  V  S  G  K  P  T  M  N  D  G  A  C  G  I  K  R  G  G  F  *  V  E  S  G  G  A  H  F  G  T  I  K  G  Q  N  W  N  S  G  G  G  G  L  *  T  D  G  E  L  L  L  F  G  F  E  N  E  L  F  L  L  L  L  L  *  G  V  K  G  V  G  V  R  E  E  N  G  G  R  K  E  R  *  R  R  R  S  S  H  F  C  S  E  G  A  N  C   </first_frame>
            <second_frame>  F  L  L  I  L  T  D  Q  S  L  G  F  G  P  N  T  T  P  P  P  G  R  K  G  V  R  F  D  P  R  R  A  R  P  V  F  F  C  G  Y  G  L  I  P  P  P  R  T  W  A  R  V  R  V  E  A  V  P  R  R  W  L  R  R  S  V  V  S  P  R  *  T  T  A  R  A  V  S  R  G  A  D  F  K  L  R  V  V  E  P  T  S  V  P  S  K  D  R  I  G  I  V  A  A  A  A  S  E  R  M  E  N  C  C  C  L  G  L  K  M  S  C  F  C  C  C  C  F  E  E  *  R  V  L  E  L  E  K  K  M  V  E  E  K  K  D  K  E  E  E  V  A  I  F  A  V  K  E  Q  T  A  </second_frame>
            <third_frame>   F  C  *  S  *  L  T  N  P  *  V  S  A  Q  T  Q  P  H  H  L  V  V  K  E  F  G  S  T  H  V  E  L  D  P  F  S  F  V  G  M  V  *  Y  H  H  P  V  L  G  L  G  *  G  W  K  Q  Y  R  D  V  G  C  A  G  Q  W  *  A  H  D  E  R  R  R  V  R  Y  Q  E  G  R  I  L  S  *  E  W  W  S  P  L  R  Y  H  Q  R  T  E  L  E  *  W  R  R  R  P  L  N  G  W  R  I  V  V  V  W  V  *  K  *  V  V  S  A  A  A  A  L  R  S  E  G  C  W  S  *  R  R  K  W  W  K  K  R  K  I  K  K  K  K  *  P  F  L  Q  *  R  S  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62250" stop="62462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLILTDQSLGFGPNTTPPPGRKGVRFDPRRARPVFFCGYGLIPPPRTWARVRVEAVPRRWLRRSVVSPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="63688" PGL_stop="64755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63688" e_stop="63733"/>
            <exon e_start="64034" e_stop="64755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.000" e_score="0.478"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.478">
            <gDNA_exon_boundary e_start="63688" e_stop="63733" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63734" i_stop="64033" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="64034" e_stop="64755" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63688" stop="63733"/>
              <exon start="64034" stop="64755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACTCAACGCCCCTTTGCACGTTCATGGTCAGATATCATGAAT : GTCTTTAGTAAAAAGAATTTATACTAATATGGGATTTACAATTGCCATGAAAAACGTGTTAATCAATACTCCTATCTCAATGACTATCTATAAGTACTCCTTCATCCTTAATTAGAGATTTCAGATTTGAATCTTTCAGAGTACAAAGTCACCTTTACGAGGAAACAATGAATCCCTCAATACTAATGCGAATCCAGATTAGTTGAGCTCCAATATGAATATCAGACATCAGGTGCATAAAGCATAGATTCACAAGATTCTTCCCAAGAAAACTCCCTACATGCGCCAACAAAGTTAGTGAAATCTTCAACTCCATTTTGATCATAGTAACAATCCTTGAACCAAATATTCATATCATCATCATCACTAGGAGTTGAAGAATCCATGTCTGAATCAATCCAACAATATTCAAGTTCACCAAGATCATCACAAGACAAATTAGTTGAATTCTCTACTTTCATTTGCTCAAACAAAATTGAATCATTTGTATTAACACTAGGAACAATATTCTCTACTTCTAATGACTCAATCACACTTCTTAATAACTCTTCATCACTTGCCTCAAATTCTGGTTCTTCAAGAAATGACATGAAAACATCGTTCTCAATATTGCTAAGTGCAAGATTTTCATTATTACAATATGTGGCCATTGACATGTTGAATATGAGATAAAAGAGAAGTTGAAAAATTGAAAGATTTTTTTGGAGAAGATTAGCTTTAAT</gDNA_template>
            <first_frame> *  D  S  T  P  L  C  T  F  M  V  R  Y  H  E   : C  L  *  *  K  E  F  I  L  I  W  D  L  Q  L  P  *  K  T  C  *  S  I  L  L  S  Q  *  L  S  I  S  T  P  S  S  L  I  R  D  F  R  F  E  S  F  R  V  Q  S  H  L  Y  E  E  T  M  N  P  S  I  L  M  R  I  Q  I  S  *  A  P  I  *  I  S  D  I  R  C  I  K  H  R  F  T  R  F  F  P  R  K  L  P  T  C  A  N  K  V  S  E  I  F  N  S  I  L  I  I  V  T  I  L  E  P  N  I  H  I  I  I  I  T  R  S  *  R  I  H  V  *  I  N  P  T  I  F  K  F  T  K  I  I  T  R  Q  I  S  *  I  L  Y  F  H  L  L  K  Q  N  *  I  I  C  I  N  T  R  N  N  I  L  Y  F  *  *  L  N  H  T  S  *  *  L  F  I  T  C  L  K  F  W  F  F  K  K  *  H  E  N  I  V  L  N  I  A  K  C  K  I  F  I  I  T  I  C  G  H  *  H  V  E  Y  E  I  K  E  K  L  K  N  *  K  I  F  L  E  K  I  S  F  N </first_frame>
            <second_frame>  K  T  Q  R  P  F  A  R  S  W  S  D  I  M  N  :  V  F  S  K  K  N  L  Y  *  Y  G  I  Y  N  C  H  E  K  R  V  N  Q  Y  S  Y  L  N  D  Y  L  *  V  L  L  H  P  *  L  E  I  S  D  L  N  L  S  E  Y  K  V  T  F  T  R  K  Q  *  I  P  Q  Y  *  C  E  S  R  L  V  E  L  Q  Y  E  Y  Q  T  S  G  A  *  S  I  D  S  Q  D  S  S  Q  E  N  S  L  H  A  P  T  K  L  V  K  S  S  T  P  F  *  S  *  *  Q  S  L  N  Q  I  F  I  S  S  S  S  L  G  V  E  E  S  M  S  E  S  I  Q  Q  Y  S  S  S  P  R  S  S  Q  D  K  L  V  E  F  S  T  F  I  C  S  N  K  I  E  S  F  V  L  T  L  G  T  I  F  S  T  S  N  D  S  I  T  L  L  N  N  S  S  S  L  A  S  N  S  G  S  S  R  N  D  M  K  T  S  F  S  I  L  L  S  A  R  F  S  L  L  Q  Y  V  A  I  D  M  L  N  M  R  *  K  R  S  *  K  I  E  R  F  F  W  R  R  L  A  L   </second_frame>
            <third_frame>   R  L  N  A  P  L  H  V  H  G  Q  I  S  *  M :   S  L  V  K  R  I  Y  T  N  M  G  F  T  I  A  M  K  N  V  L  I  N  T  P  I  S  M  T  I  Y  K  Y  S  F  I  L  N  *  R  F  Q  I  *  I  F  Q  S  T  K  S  P  L  R  G  N  N  E  S  L  N  T  N  A  N  P  D  *  L  S  S  N  M  N  I  R  H  Q  V  H  K  A  *  I  H  K  I  L  P  K  K  T  P  Y  M  R  Q  Q  S  *  *  N  L  Q  L  H  F  D  H  S  N  N  P  *  T  K  Y  S  Y  H  H  H  H  *  E  L  K  N  P  C  L  N  Q  S  N  N  I  Q  V  H  Q  D  H  H  K  T  N  *  L  N  S  L  L  S  F  A  Q  T  K  L  N  H  L  Y  *  H  *  E  Q  Y  S  L  L  L  M  T  Q  S  H  F  L  I  T  L  H  H  L  P  Q  I  L  V  L  Q  E  M  T  *  K  H  R  S  Q  Y  C  *  V  Q  D  F  H  Y  Y  N  M  W  P  L  T  C  *  I  *  D  K  R  E  V  E  K  L  K  D  F  F  G  E  D  *  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64364" stop="64705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLNQIFISSSSLGVEESMSESIQQYSSSPRSSQDKLVEFSTFICSNKIESFVLTLGTIFSTSNDSITLLNNSSSLASNSGSSRNDMKTSFSILLSARFSLLQYVAIDMLNMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64782" PGL_stop="64037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64782" e_stop="64037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64782" e_stop="64037" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64782" stop="64226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64755" stop="64037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64754" stop="64218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCCTCTAATTTTTTGTTATCAATTAAAGCTAATCTTCTCCAAAAAAATCTTTCAATTTTTCAACTTCTCTTTTATCTCATATTCAACATGTCAATGGCCACATATTGTAATAATGAAAATCTTGCACTTAGCAATATTGAGAACGATGTTTTCATGTCATTTCTTGAAGAACCAGAATTTGAGGCAAGTGATGAAGAGTTATTAAGAAGTGTGATTGAGTCATTAGAAGTAGAGAATATTGTTCCTAGTGTTAATACAAATGATTCAATTTTGTTTGAGCAAATGAAAGTAGAGAATTCAACTAATTTGTCTTGTGATGATCTTGGTGAACTTGAATATTGTTGGATTGATTCAGACATGGATTCTTCAACTCCTAGTGATGATGATGATATGAATATTTGGTTCAAGGATTGTTACTATGATCAAAATGGAGTTGAAGATTTCACTAACTTTGTTGGCGCATGTAGGGAGTTTTCTTGGGAAGAATCTTGTGAATCTATGCTTTATGCACCTGATGTCTGATATTCATATTGGAGCTCAACTAATCTGGATTCGCATTAGTATTGAGGGATTCATTGTTTCCTCGTAAAGGTGACTTTGTACTCTGAAAGATTCAAATCTGAAATCTCTAATTAAGGATGAAGGAGTACTTATAGATAGTCATTGAGATAGGAGTATTGATTAACACGTTTTTCATGGCAATTGTAAATCCCATATTAGTATAAATTCTTTTTACTAAA</gDNA_template>
            <first_frame> F  F  S  S  N  F  L  L  S  I  K  A  N  L  L  Q  K  N  L  S  I  F  Q  L  L  F  Y  L  I  F  N  M  S  M  A  T  Y  C  N  N  E  N  L  A  L  S  N  I  E  N  D  V  F  M  S  F  L  E  E  P  E  F  E  A  S  D  E  E  L  L  R  S  V  I  E  S  L  E  V  E  N  I  V  P  S  V  N  T  N  D  S  I  L  F  E  Q  M  K  V  E  N  S  T  N  L  S  C  D  D  L  G  E  L  E  Y  C  W  I  D  S  D  M  D  S  S  T  P  S  D  D  D  D  M  N  I  W  F  K  D  C  Y  Y  D  Q  N  G  V  E  D  F  T  N  F  V  G  A  C  R  E  F  S  W  E  E  S  C  E  S  M  L  Y  A  P  D  V  *  Y  S  Y  W  S  S  T  N  L  D  S  H  *  Y  *  G  I  H  C  F  L  V  K  V  T  L  Y  S  E  R  F  K  S  E  I  S  N  *  G  *  R  S  T  Y  R  *  S  L  R  *  E  Y  *  L  T  R  F  S  W  Q  L  *  I  P  Y  *  Y  K  F  F  L  L   </first_frame>
            <second_frame>  F  F  P  L  I  F  C  Y  Q  L  K  L  I  F  S  K  K  I  F  Q  F  F  N  F  S  F  I  S  Y  S  T  C  Q  W  P  H  I  V  I  M  K  I  L  H  L  A  I  L  R  T  M  F  S  C  H  F  L  K  N  Q  N  L  R  Q  V  M  K  S  Y  *  E  V  *  L  S  H  *  K  *  R  I  L  F  L  V  L  I  Q  M  I  Q  F  C  L  S  K  *  K  *  R  I  Q  L  I  C  L  V  M  I  L  V  N  L  N  I  V  G  L  I  Q  T  W  I  L  Q  L  L  V  M  M  M  I  *  I  F  G  S  R  I  V  T  M  I  K  M  E  L  K  I  S  L  T  L  L  A  H  V  G  S  F  L  G  K  N  L  V  N  L  C  F  M  H  L  M  S  D  I  H  I  G  A  Q  L  I  W  I  R  I  S  I  E  G  F  I  V  S  S  *  R  *  L  C  T  L  K  D  S  N  L  K  S  L  I  K  D  E  G  V  L  I  D  S  H  *  D  R  S  I  D  *  H  V  F  H  G  N  C  K  S  H  I  S  I  N  S  F  Y  *  </second_frame>
            <third_frame>   F  F  L  *  F  F  V  I  N  *  S  *  S  S  P  K  K  S  F  N  F  S  T  S  L  L  S  H  I  Q  H  V  N  G  H  I  L  *  *  *  K  S  C  T  *  Q  Y  *  E  R  C  F  H  V  I  S  *  R  T  R  I  *  G  K  *  *  R  V  I  K  K  C  D  *  V  I  R  S  R  E  Y  C  S  *  C  *  Y  K  *  F  N  F  V  *  A  N  E  S  R  E  F  N  *  F  V  L  *  *  S  W  *  T  *  I  L  L  D  *  F  R  H  G  F  F  N  S  *  *  *  *  *  Y  E  Y  L  V  Q  G  L  L  L  *  S  K  W  S  *  R  F  H  *  L  C  W  R  M  *  G  V  F  L  G  R  I  L  *  I  Y  A  L  C  T  *  C  L  I  F  I  L  E  L  N  *  S  G  F  A  L  V  L  R  D  S  L  F  P  R  K  G  D  F  V  L  *  K  I  Q  I  *  N  L  *  L  R  M  K  E  Y  L  *  I  V  I  E  I  G  V  L  I  N  T  F  F  M  A  I  V  N  P  I  L  V  *  I  L  F  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64782" stop="64255"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSSNFLLSIKANLLQKNLSIFQLLFYLIFNMSMATYCNNENLALSNIENDVFMSFLEEPEFEASDEELLRSVIESLEVENIVPSVNTNDSILFEQMKVENSTNLSCDDLGELEYCWIDSDMDSSTPSDDDDMNIWFKDCYYDQNGVEDFTNFVGACREFSWEESCESMLYAPDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="80157" PGL_stop="76513"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80157" e_stop="79846"/>
            <exon e_start="79076" e_stop="79011"/>
            <exon e_start="77650" e_stop="77578"/>
            <exon e_start="77108" e_stop="76991"/>
            <exon e_start="76723" e_stop="76513"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80157" e_stop="79846" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="79845" i_stop="79077" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79076" e_stop="79011" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79010" i_stop="77651" i_length="1360"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77650" e_stop="77578" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.886">
            <gDNA_intron_boundary i_start="77577" i_stop="77109" i_length="469"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77108" e_stop="76991" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="76990" i_stop="76724" i_length="267"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="76723" e_stop="76513" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80157" stop="79846"/>
              <exon start="79076" stop="79011"/>
              <exon start="77650" stop="77578"/>
              <exon start="77108" stop="76991"/>
              <exon start="76723" stop="76513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80157" stop="79846"/>
              <exon start="79076" stop="79011"/>
              <exon start="77650" stop="77578"/>
              <exon start="77108" stop="76991"/>
              <exon start="76723" stop="76514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80156" stop="79846"/>
              <exon start="79076" stop="79011"/>
              <exon start="77650" stop="77578"/>
              <exon start="77108" stop="77017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATTTCAACTATTTTTAGTTGATAACTCCAAATTTCAATTATGAGTGAAGGAGGCAAGGACAGTCATTATCACCACCATGGCCACCACTATGACCACCACCACCACCACTATGGACACCACCATCACCACCAAGAGAAGACCCAACCACCCCCACCATGGCTACCAACAGCACCACCAGAAGTAGCTGAATATGGTACTTTTCAACCACCTCCTCAACCAGTAATTGGTTTTCCTCTGCCAGTTCCTCCACCTGGATCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCATTCTGTTCCAG : TTCCTCCACCTGGAGCAGTACTTGAACCTTCTGAATACTATGCTCGTGGCTATCAGTCCGTTCCAG : GTTATGTGATTGATGAGAGGAGACCTGTAACAGAGCCCCGCCTTCCTTTCGGTATTGGTCTTGGCTGGTTCTT : GTTCATTATTGGTTTCTTTCTTGCTGGCTTCCCTTGGTATGTTGCTGCATTTATCCCGCTTTGCAACAGATCAATTGATCATCGAGAGAAATCAGGATTCGTTGCATGCACCATTGCT : GCTGTTCTCGCTGTAATTGGTAATATCGTATTTGGGTTGACATGGATATTATTAACAGCATAATGGTGATCAACTTCTGTGGAGTATTCGTGTTCTAGCTAGTTTGCTTGATTAATGCACATTTTATTCAGAACATTTCTGTAAAACAAAAGTTACATGTTATAATTAAATAAATAATTATATGTGCTTCCTGTATTAATCAGAAATAATT</gDNA_template>
            <first_frame> Q  K  F  Q  L  F  L  V  D  N  S  K  F  Q  L  *  V  K  E  A  R  T  V  I  I  T  T  M  A  T  T  M  T  T  T  T  T  T  M  D  T  T  I  T  T  K  R  R  P  N  H  P  H  H  G  Y  Q  Q  H  H  Q  K  *  L  N  M  V  L  F  N  H  L  L  N  Q  *  L  V  F  L  C  Q  F  L  H  L  D  Q  Y  L  N  L  L  N  T  M  L  V  A  I  I  L  F  Q  :  F  L  H  L  E  Q  Y  L  N  L  L  N  T  M  L  V  A  I  S  P  F  Q  :  V  M  *  L  M  R  G  D  L  *  Q  S  P  A  F  L  S  V  L  V  L  A  G  S   : C  S  L  L  V  S  F  L  L  A  S  L  G  M  L  L  H  L  S  R  F  A  T  D  Q  L  I  I  E  R  N  Q  D  S  L  H  A  P  L  L :   L  F  S  L  *  L  V  I  S  Y  L  G  *  H  G  Y  Y  *  Q  H  N  G  D  Q  L  L  W  S  I  R  V  L  A  S  L  L  D  *  C  T  F  Y  S  E  H  F  C  K  T  K  V  T  C  Y  N  *  I  N  N  Y  M  C  F  L  Y  *  S  E  I  I </first_frame>
            <second_frame>  K  N  F  N  Y  F  *  L  I  T  P  N  F  N  Y  E  *  R  R  Q  G  Q  S  L  S  P  P  W  P  P  L  *  P  P  P  P  P  L  W  T  P  P  S  P  P  R  E  D  P  T  T  P  T  M  A  T  N  S  T  T  R  S  S  *  I  W  Y  F  S  T  T  S  S  T  S  N  W  F  S  S  A  S  S  S  T  W  I  S  T  *  T  F  *  I  L  C  S  W  L  S  F  C  S  S :   S  S  T  W  S  S  T  *  T  F  *  I  L  C  S  W  L  S  V  R  S  R :   L  C  D  *  *  E  E  T  C  N  R  A  P  P  S  F  R  Y  W  S  W  L  V  L  :  V  H  Y  W  F  L  S  C  W  L  P  L  V  C  C  C  I  Y  P  A  L  Q  Q  I  N  *  S  S  R  E  I  R  I  R  C  M  H  H  C   : C  C  S  R  C  N  W  *  Y  R  I  W  V  D  M  D  I  I  N  S  I  M  V  I  N  F  C  G  V  F  V  F  *  L  V  C  L  I  N  A  H  F  I  Q  N  I  S  V  K  Q  K  L  H  V  I  I  K  *  I  I  I  C  A  S  C  I  N  Q  K  *   </second_frame>
            <third_frame>   K  I  S  T  I  F  S  *  *  L  Q  I  S  I  M  S  E  G  G  K  D  S  H  Y  H  H  H  G  H  H  Y  D  H  H  H  H  H  Y  G  H  H  H  H  H  Q  E  K  T  Q  P  P  P  P  W  L  P  T  A  P  P  E  V  A  E  Y  G  T  F  Q  P  P  P  Q  P  V  I  G  F  P  L  P  V  P  P  P  G  S  V  L  E  P  S  E  Y  Y  A  R  G  Y  H  S  V  P   : V  P  P  P  G  A  V  L  E  P  S  E  Y  Y  A  R  G  Y  Q  S  V  P   : G  Y  V  I  D  E  R  R  P  V  T  E  P  R  L  P  F  G  I  G  L  G  W  F  L :   F  I  I  G  F  F  L  A  G  F  P  W  Y  V  A  A  F  I  P  L  C  N  R  S  I  D  H  R  E  K  S  G  F  V  A  C  T  I  A  :  A  V  L  A  V  I  G  N  I  V  F  G  L  T  W  I  L  L  T  A  *  W  *  S  T  S  V  E  Y  S  C  S  S  *  F  A  *  L  M  H  I  L  F  R  T  F  L  *  N  K  S  Y  M  L  *  L  N  K  *  L  Y  V  L  P  V  L  I  R  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80128" stop="79846"/>
                    <exon start="79076" stop="79011"/>
                    <exon start="77650" stop="77578"/>
                    <exon start="77108" stop="76991"/>
                    <exon start="76723" stop="76661"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQISIMSEGGKDSHYHHHGHHYDHHHHHYGHHHHHQEKTQPPPPWLPTAPPEVAEYGTFQPPPQPVIGFPLPVPPPGSVLEPSEYYARGYHSVPVPPPGAVLEPSEYYARGYQSVPGYVIDERRPVTEPRLPFGIGLGWFLFIIGFFLAGFPWYVAAFIPLCNRSIDHREKSGFVACTIAAVLAVIGNIVFGLTWILLTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="86292" PGL_stop="81189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86292" e_stop="86097"/>
            <exon e_start="84555" e_stop="84427"/>
            <exon e_start="84300" e_stop="84193"/>
            <exon e_start="83064" e_stop="82930"/>
            <exon e_start="82261" e_stop="82220"/>
            <exon e_start="82107" e_stop="82048"/>
            <exon e_start="81965" e_stop="81912"/>
            <exon e_start="81604" e_stop="81580"/>
            <exon e_start="81499" e_stop="81189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86292" e_stop="86097" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84555" e_stop="84427" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.903">
            <gDNA_intron_boundary i_start="84426" i_stop="84301" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84300" e_stop="84193" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84192" i_stop="83065" i_length="1128"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83064" e_stop="82930" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82261" e_stop="82220" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82107" e_stop="82048" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81965" e_stop="81912" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81604" e_stop="81580" e_length="25"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81499" e_stop="81189" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86292" stop="86097"/>
              <exon start="84555" stop="84427"/>
              <exon start="84300" stop="84193"/>
              <exon start="83064" stop="82930"/>
              <exon start="82261" stop="82220"/>
              <exon start="82107" stop="82048"/>
              <exon start="81965" stop="81912"/>
              <exon start="81604" stop="81580"/>
              <exon start="81499" stop="81461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86291" stop="86097"/>
              <exon start="84555" stop="84427"/>
              <exon start="84300" stop="84193"/>
              <exon start="83064" stop="82937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84477" stop="84427"/>
              <exon start="84300" stop="84193"/>
              <exon start="83064" stop="82930"/>
              <exon start="82261" stop="82220"/>
              <exon start="82107" stop="82048"/>
              <exon start="81965" stop="81912"/>
              <exon start="81604" stop="81580"/>
              <exon start="81499" stop="81401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82241" stop="82220"/>
              <exon start="82107" stop="82048"/>
              <exon start="81965" stop="81912"/>
              <exon start="81604" stop="81580"/>
              <exon start="81499" stop="81189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGTTCGAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : ACAAAGTTCCCTGGTGTGAAATCAATCATATCAAAAGCAAGCAATGCAAAAGCTGATATTTTTGTTGAACCTGGTGATAAGATCTACTTTGGTGATATTTTTCTGGAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC : GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG : GAAACATTCAAAAACATCATGCAGA : ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</gDNA_template>
            <first_frame> M  V  R  S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : D  K  V  P  W  C  E  I  N  H  I  K  S  K  Q  C  K  S  *  Y  F  C  *  T  W  *  *  D  L  L  W  *  Y  F  S  G   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  L  Q  R  V  H   : R  Q  L  S  G  R  G  D  A  I  Q  S  T  P  I  K  R  *   : G  N  I  Q  K  H  H  A  E :   F  E  F  V  I  S  K  N  D  G  R  R  S  S  S  *  H  G  L  W  I  T  R  D  K  I  R  S  L  L  N  S  S  F  M  V  T  T  N  V  N  G  K  Q  G  I  H  D  L  K  R  K  L  T  K  *  C  L  A  G  E  V  E  *  D  I  V  P  R  S  Y  V  V  L  T  D  K  N  L  E  Y  M  Y  V  T  *  F  L  R  W  E  *  *  K  V  K  F  I  S  C  C  I  F  </first_frame>
            <second_frame>  W  F  E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  T  K  F  P  G  V  K  S  I  I  S  K  A  S  N  A  K  A  D  I  F  V  E  P  G  D  K  I  Y  F  G  D  I  F  L  E  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D  Y  K  G  F  T  :  V  S  S  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  M  D  V  A  V  P  A  N  M  V  C  G  L  Q  E  T  K  S  E  A  C  *  I  L  L  S  W  S  L  R  M  *  M  G  S  K  V  Y  T  I  *  S  E  S  *  Q  N  N  V  *  L  E  K  L  N  K  I  L  F  Q  E  A  M  *  F  *  L  I  R  I  L  N  I  C  M  *  L  D  F  *  D  G  N  N  E  K  *  N  L  S  V  A  A  F  S </second_frame>
            <third_frame>   G  S  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   Q  S  S  L  V  *  N  Q  S  Y  Q  K  Q  A  M  Q  K  L  I  F  L  L  N  L  V  I  R  S  T  L  V  I  F  F  W  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M  T  T  K  G  S  P :   S  A  Q  W  E  R  R  C  Y  T  I  H  A  Y  Q  K  I  R :   K  H  S  K  T  S  C  R  :  I  *  I  C  H  I  Q  K  *  W  T  S  Q  F  Q  L  T  W  F  V  D  Y  K  R  Q  N  Q  K  L  A  K  F  F  F  H  G  H  Y  E  C  K  W  E  A  R  Y  T  R  F  E  A  K  V  N  K  I  M  F  S  W  R  S  *  I  R  Y  C  S  K  K  L  C  S  F  N  *  *  E  S  *  I  Y  V  C  N  L  I  S  E  M  G  I  M  K  S  E  I  Y  Q  L  L  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86291" stop="86097"/>
                    <exon start="84555" stop="84427"/>
                    <exon start="84300" stop="84193"/>
                    <exon start="83064" stop="82930"/>
                    <exon start="82261" stop="82220"/>
                    <exon start="82107" stop="82048"/>
                    <exon start="81965" stop="81912"/>
                    <exon start="81604" stop="81580"/>
                    <exon start="81499" stop="81408"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFEAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKTKFPGVKSIISKASNAKADIFVEPGDKIYFGDIFLEVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHDYKGFTVSSVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMMDVAVPANMVCGLQETKSEAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86285" e_stop="86097"/>
            <exon e_start="84555" e_stop="84427"/>
            <exon e_start="83064" e_stop="82930"/>
            <exon e_start="82261" e_stop="82220"/>
            <exon e_start="82107" e_stop="82048"/>
            <exon e_start="81965" e_stop="81912"/>
            <exon e_start="81604" e_stop="81580"/>
            <exon e_start="81499" e_stop="81189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86285" e_stop="86097" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.937">
            <gDNA_intron_boundary i_start="86096" i_stop="84556" i_length="1541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84555" e_stop="84427" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="84426" i_stop="83065" i_length="1362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83064" e_stop="82930" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="82929" i_stop="82262" i_length="668"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82261" e_stop="82220" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.838">
            <gDNA_intron_boundary i_start="82219" i_stop="82108" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82107" e_stop="82048" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82047" i_stop="81966" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81965" e_stop="81912" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81911" i_stop="81605" i_length="307"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="81604" e_stop="81580" e_length="25"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="81579" i_stop="81500" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81499" e_stop="81189" e_length="311"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86285" stop="86097"/>
              <exon start="84555" stop="84427"/>
              <exon start="83064" stop="82930"/>
              <exon start="82261" stop="82220"/>
              <exon start="82107" stop="82063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82241" stop="82220"/>
              <exon start="82107" stop="82048"/>
              <exon start="81965" stop="81912"/>
              <exon start="81604" stop="81580"/>
              <exon start="81499" stop="81189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCCCCTTTTATTCAATCGTTCAAACCCCACAATTCTCCCATTCGTGCTCAAATGGGTTCGCATTCTACGACTTCGTCTTCTGCTCAAAATAGCCCTAAACTTGTTTTCCGTCAGCTCTTTGAGAAGGAATCATCTACCTATACTTACCTTGTTGCTGATGCTTCGCATCCCCAAAAGCCCGCTTTG : CTGATTGACCCAGTGGACAAAACAGCGGATCGTGATCTTGCACTTGTTAAGGAGCTGGGTTTGAAGCTTATATATGCTATAAACACACATGTACATGCTGATCATATCACTGGTTCTGGCTTGATCAAG : GTTCGTGCAACTCCTGGTCATACACTTGGATGTGTTACCTATGTCACGGGAGATGGACCCAATCAACCTCAACCAAGGATGGCCTTTACTGGTGATGCCCTTTTGATACGTGGATGTGGAAGGACAGACTTTCAG : GGTGGAAGTTCAGACAAATTGTATGATTCAGTTCATTCACAG : ATTTTCACATTGCCTAAAGACACATTATTATATCCTGCTCATGACTACAAAGGGTTCACC : GTCAGCTCAGTGGGAGAGGAGATGCTATACAATCCACGCCTATCAAAAGATAAG : GAAACATTCAAAAACATCATGCAGA : ATTTGAATTTGTCATATCCAAAAATGATGGACGTCGCAGTTCCAGCTAACATGGTTTGTGGATTACAAGAGACAAAATCAGAAGCTTGCTAAATTCTTCTTTCATGGTCACTACGAATGTAAATGGGAAGCAAGGTATACACGATTTGAAGCGAAAGTTAACAAAATAATGTTTAGCTGGAGAAGTTGAATAAGATATTGTTCCAAGAAGCTATGTAGTTTTAACTGATAAGAATCTTGAATATATGTATGTAACTTGATTTCTGAGATGGGAATAATGAAAAGTGAAATTTATCAGTTGCTGCATTTTCT</gDNA_template>
            <first_frame> E  A  P  F  I  Q  S  F  K  P  H  N  S  P  I  R  A  Q  M  G  S  H  S  T  T  S  S  S  A  Q  N  S  P  K  L  V  F  R  Q  L  F  E  K  E  S  S  T  Y  T  Y  L  V  A  D  A  S  H  P  Q  K  P  A  L  :  L  I  D  P  V  D  K  T  A  D  R  D  L  A  L  V  K  E  L  G  L  K  L  I  Y  A  I  N  T  H  V  H  A  D  H  I  T  G  S  G  L  I  K  :  V  R  A  T  P  G  H  T  L  G  C  V  T  Y  V  T  G  D  G  P  N  Q  P  Q  P  R  M  A  F  T  G  D  A  L  L  I  R  G  C  G  R  T  D  F  Q  :  G  G  S  S  D  K  L  Y  D  S  V  H  S  Q  :  I  F  T  L  P  K  D  T  L  L  Y  P  A  H  D  Y  K  G  F  T  :  V  S  S  V  G  E  E  M  L  Y  N  P  R  L  S  K  D  K  :  E  T  F  K  N  I  M  Q   : N  L  N  L  S  Y  P  K  M  M  D  V  A  V  P  A  N  M  V  C  G  L  Q  E  T  K  S  E  A  C  *  I  L  L  S  W  S  L  R  M  *  M  G  S  K  V  Y  T  I  *  S  E  S  *  Q  N  N  V  *  L  E  K  L  N  K  I  L  F  Q  E  A  M  *  F  *  L  I  R  I  L  N  I  C  M  *  L  D  F  *  D  G  N  N  E  K  *  N  L  S  V  A  A  F  S </first_frame>
            <second_frame>  K  P  L  L  F  N  R  S  N  P  T  I  L  P  F  V  L  K  W  V  R  I  L  R  L  R  L  L  L  K  I  A  L  N  L  F  S  V  S  S  L  R  R  N  H  L  P  I  L  T  L  L  L  M  L  R  I  P  K  S  P  L  C :   *  L  T  Q  W  T  K  Q  R  I  V  I  L  H  L  L  R  S  W  V  *  S  L  Y  M  L  *  T  H  M  Y  M  L  I  I  S  L  V  L  A  *  S  R :   F  V  Q  L  L  V  I  H  L  D  V  L  P  M  S  R  E  M  D  P  I  N  L  N  Q  G  W  P  L  L  V  M  P  F  *  Y  V  D  V  E  G  Q  T  F  R :   V  E  V  Q  T  N  C  M  I  Q  F  I  H  R :   F  S  H  C  L  K  T  H  Y  Y  I  L  L  M  T  T  K  G  S  P :   S  A  Q  W  E  R  R  C  Y  T  I  H  A  Y  Q  K  I  R :   K  H  S  K  T  S  C  R  :  I  *  I  C  H  I  Q  K  *  W  T  S  Q  F  Q  L  T  W  F  V  D  Y  K  R  Q  N  Q  K  L  A  K  F  F  F  H  G  H  Y  E  C  K  W  E  A  R  Y  T  R  F  E  A  K  V  N  K  I  M  F  S  W  R  S  *  I  R  Y  C  S  K  K  L  C  S  F  N  *  *  E  S  *  I  Y  V  C  N  L  I  S  E  M  G  I  M  K  S  E  I  Y  Q  L  L  H  F   </second_frame>
            <third_frame>   S  P  F  Y  S  I  V  Q  T  P  Q  F  S  H  S  C  S  N  G  F  A  F  Y  D  F  V  F  C  S  K  *  P  *  T  C  F  P  S  A  L  *  E  G  I  I  Y  L  Y  L  P  C  C  *  C  F  A  S  P  K  A  R  F   : A  D  *  P  S  G  Q  N  S  G  S  *  S  C  T  C  *  G  A  G  F  E  A  Y  I  C  Y  K  H  T  C  T  C  *  S  Y  H  W  F  W  L  D  Q   : G  S  C  N  S  W  S  Y  T  W  M  C  Y  L  C  H  G  R  W  T  Q  S  T  S  T  K  D  G  L  Y  W  *  C  P  F  D  T  W  M  W  K  D  R  L  S   : G  W  K  F  R  Q  I  V  *  F  S  S  F  T   : D  F  H  I  A  *  R  H  I  I  I  S  C  S  *  L  Q  R  V  H   : R  Q  L  S  G  R  G  D  A  I  Q  S  T  P  I  K  R  *   : G  N  I  Q  K  H  H  A  E :   F  E  F  V  I  S  K  N  D  G  R  R  S  S  S  *  H  G  L  W  I  T  R  D  K  I  R  S  L  L  N  S  S  F  M  V  T  T  N  V  N  G  K  Q  G  I  H  D  L  K  R  K  L  T  K  *  C  L  A  G  E  V  E  *  D  I  V  P  R  S  Y  V  V  L  T  D  K  N  L  E  Y  M  Y  V  T  *  F  L  R  W  E  *  *  K  V  K  F  I  S  C  C  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86285" stop="86097"/>
                    <exon start="84555" stop="84427"/>
                    <exon start="83064" stop="82930"/>
                    <exon start="82261" stop="82220"/>
                    <exon start="82107" stop="82048"/>
                    <exon start="81965" stop="81912"/>
                    <exon start="81604" stop="81580"/>
                    <exon start="81499" stop="81408"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAPFIQSFKPHNSPIRAQMGSHSTTSSSAQNSPKLVFRQLFEKESSTYTYLVADASHPQKPALLIDPVDKTADRDLALVKELGLKLIYAINTHVHADHITGSGLIKVRATPGHTLGCVTYVTGDGPNQPQPRMAFTGDALLIRGCGRTDFQGGSSDKLYDSVHSQIFTLPKDTLLYPAHDYKGFTVSSVGEEMLYNPRLSKDKETFKNIMQNLNLSYPKMMDVAVPANMVCGLQETKSEAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="93135" PGL_stop="94677"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93135" e_stop="93227"/>
            <exon e_start="93306" e_stop="93492"/>
            <exon e_start="93663" e_stop="93786"/>
            <exon e_start="94017" e_stop="94677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.957"/>
          <exon-intron don_prob="0.989" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.530" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="93135" e_stop="93227" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93228" i_stop="93305" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93306" e_stop="93492" e_length="187"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.981">
            <gDNA_intron_boundary i_start="93493" i_stop="93662" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93663" e_stop="93786" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.530">
            <gDNA_intron_boundary i_start="93787" i_stop="94016" i_length="230"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94017" e_stop="94677" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="93227"/>
              <exon start="93306" stop="93492"/>
              <exon start="93663" stop="93786"/>
              <exon start="94017" stop="94158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93781" stop="93786"/>
              <exon start="94017" stop="94579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94053" stop="94481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94124" stop="94677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94124" stop="94675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94127" stop="94636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94127" stop="94410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94165" stop="94638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACTGGTTTTCAGCTGATGCTAAGGAGCCCATTGCTTTTGTGATTTTAGAAGTTCTTGAAGCAGCTGACATGAAGCCATCAGATTTAAATG : GATTGGCTGATCCATATGTTAAGGGGCACATTGGCCTTTACAGATTCAGGACTAAGACTAAGAAGAAGACATTGAATCCACAGTGGCGTGAGGAGTTCAAGATTCCAGTCTGTACATGGGAGTCTCCTAACAACATGCTCAATGTCGAAGTTCGTGACAAAGACCATTTATATGATGATACATTGGG : AAAATGTTCCATCAATATCTGTGATTTTAGGGATGGCCAGAGGCATGATATGTGGCTGTCTCTTCAGAACATCAAAATTGGGAGATTGCATCTTGCCATAACTGTTGTTGATTGTGCCAAAAAG : GGCGCGGAGCAGTCATATGATAGCGGAAGTATGGTCAATGAACAGGATAGCAAATCTGCTGAGGTGGATAAAACTGAACAAAGCTCCTTAACCACTGAATCAGTTGATGAACCTTCAAAAACTGGAGATAAGTATGAACCTATTAATATTGAAGGGCAGCGGGAGACTGGTATATGGGTACACCAACCAGGGAGTGAAGTAGCACAAGTATGGGAACCAAGAAAGGGGAAGAACAGGGTTATTGGCGGAGAAGTTCATAGTGAAAATGCTGGTTCTAAGGGAAGTCTTAAGTCAACATCAGGCGGCTCCTCTCACTATAATGAATACAAGCTTGATGGAAGTGGTAACGGAAGTAAGCCAGATTCTCCAGGTCGTTTTCACAGGGGTTTACATAAGATCAGCTCGCTCTTCCGGAGAAGTTCAAGTAAAGAGGATAAGTCAGGCAATCTTGGAGAGCCTGATTTATCTCCGCGTGTGAATCTTAGGGCAGTTAATGCCAAGGATATAGGAGTGAAGATTATAGTGGATGACACCATTTTGCCTTCATCATTAACAACACCTACAGAAGATGGGAAAGATAACTGCGCAGGAAATGGGAAAAACCCCACAAAGGGGAGAGTGAGAAACAAGACGAAGAAAATCCTTAAAAACGCTGGCAAAT</gDNA_template>
            <first_frame> K  T  G  F  Q  L  M  L  R  S  P  L  L  L  *  F  *  K  F  L  K  Q  L  T  *  S  H  Q  I  *  M  :  D  W  L  I  H  M  L  R  G  T  L  A  F  T  D  S  G  L  R  L  R  R  R  H  *  I  H  S  G  V  R  S  S  R  F  Q  S  V  H  G  S  L  L  T  T  C  S  M  S  K  F  V  T  K  T  I  Y  M  M  I  H  W   : E  N  V  P  S  I  S  V  I  L  G  M  A  R  G  M  I  C  G  C  L  F  R  T  S  K  L  G  D  C  I  L  P  *  L  L  L  I  V  P  K  R :   A  R  S  S  H  M  I  A  E  V  W  S  M  N  R  I  A  N  L  L  R  W  I  K  L  N  K  A  P  *  P  L  N  Q  L  M  N  L  Q  K  L  E  I  S  M  N  L  L  I  L  K  G  S  G  R  L  V  Y  G  Y  T  N  Q  G  V  K  *  H  K  Y  G  N  Q  E  R  G  R  T  G  L  L  A  E  K  F  I  V  K  M  L  V  L  R  E  V  L  S  Q  H  Q  A  A  P  L  T  I  M  N  T  S  L  M  E  V  V  T  E  V  S  Q  I  L  Q  V  V  F  T  G  V  Y  I  R  S  A  R  S  S  G  E  V  Q  V  K  R  I  S  Q  A  I  L  E  S  L  I  Y  L  R  V  *  I  L  G  Q  L  M  P  R  I  *  E  *  R  L  *  W  M  T  P  F  C  L  H  H  *  Q  H  L  Q  K  M  G  K  I  T  A  Q  E  M  G  K  T  P  Q  R  G  E  *  E  T  R  R  R  K  S  L  K  T  L  A  N </first_frame>
            <second_frame>  K  L  V  F  S  *  C  *  G  A  H  C  F  C  D  F  R  S  S  *  S  S  *  H  E  A  I  R  F  K  W :   I  G  *  S  I  C  *  G  A  H  W  P  L  Q  I  Q  D  *  D  *  E  E  D  I  E  S  T  V  A  *  G  V  Q  D  S  S  L  Y  M  G  V  S  *  Q  H  A  Q  C  R  S  S  *  Q  R  P  F  I  *  *  Y  I  G  :  K  M  F  H  Q  Y  L  *  F  *  G  W  P  E  A  *  Y  V  A  V  S  S  E  H  Q  N  W  E  I  A  S  C  H  N  C  C  *  L  C  Q  K   : G  R  G  A  V  I  *  *  R  K  Y  G  Q  *  T  G  *  Q  I  C  *  G  G  *  N  *  T  K  L  L  N  H  *  I  S  *  *  T  F  K  N  W  R  *  V  *  T  Y  *  Y  *  R  A  A  G  D  W  Y  M  G  T  P  T  R  E  *  S  S  T  S  M  G  T  K  K  G  E  E  Q  G  Y  W  R  R  S  S  *  *  K  C  W  F  *  G  K  S  *  V  N  I  R  R  L  L  S  L  *  *  I  Q  A  *  W  K  W  *  R  K  *  A  R  F  S  R  S  F  S  Q  G  F  T  *  D  Q  L  A  L  P  E  K  F  K  *  R  G  *  V  R  Q  S  W  R  A  *  F  I  S  A  C  E  S  *  G  S  *  C  Q  G  Y  R  S  E  D  Y  S  G  *  H  H  F  A  F  I  I  N  N  T  Y  R  R  W  E  R  *  L  R  R  K  W  E  K  P  H  K  G  E  S  E  K  Q  D  E  E  N  P  *  K  R  W  Q   </second_frame>
            <third_frame>   N  W  F  S  A  D  A  K  E  P  I  A  F  V  I  L  E  V  L  E  A  A  D  M  K  P  S  D  L  N   : G  L  A  D  P  Y  V  K  G  H  I  G  L  Y  R  F  R  T  K  T  K  K  K  T  L  N  P  Q  W  R  E  E  F  K  I  P  V  C  T  W  E  S  P  N  N  M  L  N  V  E  V  R  D  K  D  H  L  Y  D  D  T  L  G :   K  C  S  I  N  I  C  D  F  R  D  G  Q  R  H  D  M  W  L  S  L  Q  N  I  K  I  G  R  L  H  L  A  I  T  V  V  D  C  A  K  K  :  G  A  E  Q  S  Y  D  S  G  S  M  V  N  E  Q  D  S  K  S  A  E  V  D  K  T  E  Q  S  S  L  T  T  E  S  V  D  E  P  S  K  T  G  D  K  Y  E  P  I  N  I  E  G  Q  R  E  T  G  I  W  V  H  Q  P  G  S  E  V  A  Q  V  W  E  P  R  K  G  K  N  R  V  I  G  G  E  V  H  S  E  N  A  G  S  K  G  S  L  K  S  T  S  G  G  S  S  H  Y  N  E  Y  K  L  D  G  S  G  N  G  S  K  P  D  S  P  G  R  F  H  R  G  L  H  K  I  S  S  L  F  R  R  S  S  S  K  E  D  K  S  G  N  L  G  E  P  D  L  S  P  R  V  N  L  R  A  V  N  A  K  D  I  G  V  K  I  I  V  D  D  T  I  L  P  S  S  L  T  T  P  T  E  D  G  K  D  N  C  A  G  N  G  K  N  P  T  K  G  R  V  R  N  K  T  K  K  I  L  K  N  A  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93137" stop="93227"/>
                    <exon start="93306" stop="93492"/>
                    <exon start="93663" stop="93786"/>
                    <exon start="94017" stop="94676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWFSADAKEPIAFVILEVLEAADMKPSDLNGLADPYVKGHIGLYRFRTKTKKKTLNPQWREEFKIPVCTWESPNNMLNVEVRDKDHLYDDTLGKCSINICDFRDGQRHDMWLSLQNIKIGRLHLAITVVDCAKKGAEQSYDSGSMVNEQDSKSAEVDKTEQSSLTTESVDEPSKTGDKYEPINIEGQRETGIWVHQPGSEVAQVWEPRKGKNRVIGGEVHSENAGSKGSLKSTSGGSSHYNEYKLDGSGNGSKPDSPGRFHRGLHKISSLFRRSSSKEDKSGNLGEPDLSPRVNLRAVNAKDIGVKIIVDDTILPSSLTTPTEDGKDNCAGNGKNPTKGRVRNKTKKILKNAGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97980" PGL_stop="97218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97980" e_stop="97727"/>
            <exon e_start="97630" e_stop="97218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97980" e_stop="97727" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.996">
            <gDNA_intron_boundary i_start="97726" i_stop="97631" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="97630" e_stop="97218" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97980" stop="97727"/>
              <exon start="97630" stop="97459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97979" stop="97727"/>
              <exon start="97630" stop="97218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATACTCACTAGTAAAAATGAATTCTTTGATGATCAAGTTGTTGTTTTTTCTCGTCCTTATTTCCAATGGATATTCAACAAAATTAGATTCATATCCTCCAACTTGTAAAAAAATTGAATGCCCAAATTATGATGTGATTGAATCTGGAAAAGACTATGAAATTCGTCGTTACAATTCCCCTATGTGGATGTCTACTGAACCAATTGATGATACGTCATTTGTTTCCGCCACCCGAATCGGTTTCACCAG : GTTATTTATGTATATTCAAGGAAAGAACGATCAGCATGAGAAAATGGATATGACAGCACCAGTTATGACACAAGTTAAGCCAAGTGATGGACCATTATGTTCCACCTCATTTGTTGTGAGTTTTAACGTACCAAAGAAGAATCAGCCAAATCCTCCTTCAGCTGAAGGCCTACATCCCCAAAAATGGAACCAAAGTAGTTATGCCGCGGTCAGGCAATTCAGTGGATTTGTTACGGATGGTGATATTCCGAAACAAGCTGCTGCCCTTACTGCCAGCATCGCTGACACTAAATGGGCAGCAGCTATCGAAAAAAGCAGGAGTAAAGATAATAGTACGATTTATACAGTTGCACAATACAACTCTCCCTTTGAGTTCAGGGCTAGAGTCAATGAGATGTGGTTTACTTTTGTTA</gDNA_template>
            <first_frame> K  K  Y  S  L  V  K  M  N  S  L  M  I  K  L  L  F  F  L  V  L  I  S  N  G  Y  S  T  K  L  D  S  Y  P  P  T  C  K  K  I  E  C  P  N  Y  D  V  I  E  S  G  K  D  Y  E  I  R  R  Y  N  S  P  M  W  M  S  T  E  P  I  D  D  T  S  F  V  S  A  T  R  I  G  F  T  R :   L  F  M  Y  I  Q  G  K  N  D  Q  H  E  K  M  D  M  T  A  P  V  M  T  Q  V  K  P  S  D  G  P  L  C  S  T  S  F  V  V  S  F  N  V  P  K  K  N  Q  P  N  P  P  S  A  E  G  L  H  P  Q  K  W  N  Q  S  S  Y  A  A  V  R  Q  F  S  G  F  V  T  D  G  D  I  P  K  Q  A  A  A  L  T  A  S  I  A  D  T  K  W  A  A  A  I  E  K  S  R  S  K  D  N  S  T  I  Y  T  V  A  Q  Y  N  S  P  F  E  F  R  A  R  V  N  E  M  W  F  T  F  V  </first_frame>
            <second_frame>  R  N  T  H  *  *  K  *  I  L  *  *  S  S  C  C  F  F  S  S  L  F  P  M  D  I  Q  Q  N  *  I  H  I  L  Q  L  V  K  K  L  N  A  Q  I  M  M  *  L  N  L  E  K  T  M  K  F  V  V  T  I  P  L  C  G  C  L  L  N  Q  L  M  I  R  H  L  F  P  P  P  E  S  V  S  P   : G  Y  L  C  I  F  K  E  R  T  I  S  M  R  K  W  I  *  Q  H  Q  L  *  H  K  L  S  Q  V  M  D  H  Y  V  P  P  H  L  L  *  V  L  T  Y  Q  R  R  I  S  Q  I  L  L  Q  L  K  A  Y  I  P  K  N  G  T  K  V  V  M  P  R  S  G  N  S  V  D  L  L  R  M  V  I  F  R  N  K  L  L  P  L  L  P  A  S  L  T  L  N  G  Q  Q  L  S  K  K  A  G  V  K  I  I  V  R  F  I  Q  L  H  N  T  T  L  P  L  S  S  G  L  E  S  M  R  C  G  L  L  L  L </second_frame>
            <third_frame>   E  I  L  T  S  K  N  E  F  F  D  D  Q  V  V  V  F  S  R  P  Y  F  Q  W  I  F  N  K  I  R  F  I  S  S  N  L  *  K  N  *  M  P  K  L  *  C  D  *  I  W  K  R  L  *  N  S  S  L  Q  F  P  Y  V  D  V  Y  *  T  N  *  *  Y  V  I  C  F  R  H  P  N  R  F  H  Q  :  V  I  Y  V  Y  S  R  K  E  R  S  A  *  E  N  G  Y  D  S  T  S  Y  D  T  S  *  A  K  *  W  T  I  M  F  H  L  I  C  C  E  F  *  R  T  K  E  E  S  A  K  S  S  F  S  *  R  P  T  S  P  K  M  E  P  K  *  L  C  R  G  Q  A  I  Q  W  I  C  Y  G  W  *  Y  S  E  T  S  C  C  P  Y  C  Q  H  R  *  H  *  M  G  S  S  Y  R  K  K  Q  E  *  R  *  *  Y  D  L  Y  S  C  T  I  Q  L  S  L  *  V  Q  G  *  S  Q  *  D  V  V  Y  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97980" stop="97727"/>
                    <exon start="97630" stop="97219"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYSLVKMNSLMIKLLFFLVLISNGYSTKLDSYPPTCKKIECPNYDVIESGKDYEIRRYNSPMWMSTEPIDDTSFVSATRIGFTRLFMYIQGKNDQHEKMDMTAPVMTQVKPSDGPLCSTSFVVSFNVPKKNQPNPPSAEGLHPQKWNQSSYAAVRQFSGFVTDGDIPKQAAALTASIADTKWAAAIEKSRSKDNSTIYTVAQYNSPFEFRARVNEMWFTFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="117841" PGL_stop="118622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117841" e_stop="118622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="117841" e_stop="118622" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117841" stop="118622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117842" stop="118449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACAGTGATTGGTGGCGCTGATACGGTTAGGGAGGGTTGTTGTTGGGGTGGTGGCATTGATGGCGGAGGTGGTTGCGGTGGATGTGGAGGTGGTTGACTTAAGTTTCTAAATAATTATACATTAGACATAAAGTTCGATTGTTAAAGGAGAAAACGTGTAATTTTATGTGTTTATTAAGTTGCCGATTACGTATGTTACACAAAACACCTATGAATTAAAAAATGAACCTCACAATTCAAGTACTAGAGTATTTAAACATCTCTAATCTAAAATGTTATGGTTCAGAAAGATGTGTTGAAGTTCTCAATTTGGGTTTTGGTGCTGGGTACTTTAATGTTTTTTTACTTAAAAGTTAAGTGATTTTTAAGAATTTCAGGATATTTTGATTGATAACAGAGAGTTGCTCGGACGGTAAATATTAAGCTGGATACTTGTGGATTATCAAATAGAAGATACATCTTGGATCATATTCTTGAGCTGTAACGAGTGTTCAGAAAGTCTAGGAAAATGTACCACATCCATACGAGCTGAAGTGTTAGAACATTTTAGCCCTTTTAGTGCAACTATGAGCCATCTAGTGTATGTACTAAGGCTGTTTCATTGCATACAAGGATGATTTGTTGTTTGAAAGAGTTAGTACTTATCAAGCTAAGGTCGAGCTGTTATAAACCTTACCTGTTACTGCATCACCTCGCCAGTCCTAGATGTGCTGCTTAGTGTAGAGTTCTGTTTTGTTTGCTTTGAGGATATATGGTAAGCCTAGCTTCATGCCCTTCGCT</gDNA_template>
            <first_frame> E  T  V  I  G  G  A  D  T  V  R  E  G  C  C  W  G  G  G  I  D  G  G  G  G  C  G  G  C  G  G  G  *  L  K  F  L  N  N  Y  T  L  D  I  K  F  D  C  *  R  R  K  R  V  I  L  C  V  Y  *  V  A  D  Y  V  C  Y  T  K  H  L  *  I  K  K  *  T  S  Q  F  K  Y  *  S  I  *  T  S  L  I  *  N  V  M  V  Q  K  D  V  L  K  F  S  I  W  V  L  V  L  G  T  L  M  F  F  Y  L  K  V  K  *  F  L  R  I  S  G  Y  F  D  *  *  Q  R  V  A  R  T  V  N  I  K  L  D  T  C  G  L  S  N  R  R  Y  I  L  D  H  I  L  E  L  *  R  V  F  R  K  S  R  K  M  Y  H  I  H  T  S  *  S  V  R  T  F  *  P  F  *  C  N  Y  E  P  S  S  V  C  T  K  A  V  S  L  H  T  R  M  I  C  C  L  K  E  L  V  L  I  K  L  R  S  S  C  Y  K  P  Y  L  L  L  H  H  L  A  S  P  R  C  A  A  *  C  R  V  L  F  C  L  L  *  G  Y  M  V  S  L  A  S  C  P  S   </first_frame>
            <second_frame>  R  Q  *  L  V  A  L  I  R  L  G  R  V  V  V  G  V  V  A  L  M  A  E  V  V  A  V  D  V  E  V  V  D  L  S  F  *  I  I  I  H  *  T  *  S  S  I  V  K  G  E  N  V  *  F  Y  V  F  I  K  L  P  I  T  Y  V  T  Q  N  T  Y  E  L  K  N  E  P  H  N  S  S  T  R  V  F  K  H  L  *  S  K  M  L  W  F  R  K  M  C  *  S  S  Q  F  G  F  W  C  W  V  L  *  C  F  F  T  *  K  L  S  D  F  *  E  F  Q  D  I  L  I  D  N  R  E  L  L  G  R  *  I  L  S  W  I  L  V  D  Y  Q  I  E  D  T  S  W  I  I  F  L  S  C  N  E  C  S  E  S  L  G  K  C  T  T  S  I  R  A  E  V  L  E  H  F  S  P  F  S  A  T  M  S  H  L  V  Y  V  L  R  L  F  H  C  I  Q  G  *  F  V  V  *  K  S  *  Y  L  S  S  *  G  R  A  V  I  N  L  T  C  Y  C  I  T  S  P  V  L  D  V  L  L  S  V  E  F  C  F  V  C  F  E  D  I  W  *  A  *  L  H  A  L  R  </second_frame>
            <third_frame>   D  S  D  W  W  R  *  Y  G  *  G  G  L  L  L  G  W  W  H  *  W  R  R  W  L  R  W  M  W  R  W  L  T  *  V  S  K  *  L  Y  I  R  H  K  V  R  L  L  K  E  K  T  C  N  F  M  C  L  L  S  C  R  L  R  M  L  H  K  T  P  M  N  *  K  M  N  L  T  I  Q  V  L  E  Y  L  N  I  S  N  L  K  C  Y  G  S  E  R  C  V  E  V  L  N  L  G  F  G  A  G  Y  F  N  V  F  L  L  K  S  *  V  I  F  K  N  F  R  I  F  *  L  I  T  E  S  C  S  D  G  K  Y  *  A  G  Y  L  W  I  I  K  *  K  I  H  L  G  S  Y  S  *  A  V  T  S  V  Q  K  V  *  E  N  V  P  H  P  Y  E  L  K  C  *  N  I  L  A  L  L  V  Q  L  *  A  I  *  C  M  Y  *  G  C  F  I  A  Y  K  D  D  L  L  F  E  R  V  S  T  Y  Q  A  K  V  E  L  L  *  T  L  P  V  T  A  S  P  R  Q  S  *  M  C  C  L  V  *  S  S  V  L  F  A  L  R  I  Y  G  K  P  S  F  M  P  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118259" stop="118459"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSWILVDYQIEDTSWIIFLSCNECSESLGKCTTSIRAEVLEHFSPFSATMSHLVYVLRLFHCIQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="118814" PGL_stop="119653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118814" e_stop="119007"/>
            <exon e_start="119157" e_stop="119653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118814" e_stop="119007" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.938">
            <gDNA_intron_boundary i_start="119008" i_stop="119156" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119157" e_stop="119653" e_length="497"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118814" stop="119007"/>
              <exon start="119157" stop="119653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544067" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATGTTATTATTGAACGTCATACAACTGGTTAGCTGCTAACTTTAGTTTCAAAGTGACATTGTTGTGCAGAAGGGATACTTATCCCTCCTATCCTTTACAGTTGTTGATATAAACAATTCGGTGACCAAACTATTGGCTTTAGGTGCCGAGTTGGATGGCCCCATCAAATATGAAATCCATGGAAAG : GTTTTGCTGCTTTGAGGTGTGTGGATGGACATATGTTAGGTCTTTATCAGCCGTCCTAAGGCATCCTCGAAACAACCACTTGCAGGTAAAAGTAATCACGACTTCTGTAACAAGGCAAATTGGTTTCTCAGCATAGATTTTGCATTCGGGTGTACTGTTGAAAGAGAGAATCGACTCTTGTACATGGAGGTGAAGCACATATAGGGAGTGTTACAGCAAGAAACAATCAATACAGTAGCTGAATTCCTACTGTATTTGTTTTTGATGTTCTGTTCTGGTTATCCTTTTGTGTAACATGATGTTTTGTATTCACCAACATGAATTGTGGTGCTCCACCCTTAACCAGAGGACTCGGATTCGAGCTTCCGGTATGGAGAAAATTTTGTTGAGAAAGCCACTCTTGAATAGGTCATGCACTGTACGATTTGGATTCAATCGGAGCTCCAACGTGGGCTCCTGACACTGGATGGGAAAACCAAAAAAAAAAACATGATGTT</gDNA_template>
            <first_frame> F  F  L  C  Y  Y  *  T  S  Y  N  W  L  A  A  N  F  S  F  K  V  T  L  L  C  R  R  D  T  Y  P  S  Y  P  L  Q  L  L  I  *  T  I  R  *  P  N  Y  W  L  *  V  P  S  W  M  A  P  S  N  M  K  S  M  E  R :   F  C  C  F  E  V  C  G  W  T  Y  V  R  S  L  S  A  V  L  R  H  P  R  N  N  H  L  Q  V  K  V  I  T  T  S  V  T  R  Q  I  G  F  S  A  *  I  L  H  S  G  V  L  L  K  E  R  I  D  S  C  T  W  R  *  S  T  Y  R  E  C  Y  S  K  K  Q  S  I  Q  *  L  N  S  Y  C  I  C  F  *  C  S  V  L  V  I  L  L  C  N  M  M  F  C  I  H  Q  H  E  L  W  C  S  T  L  N  Q  R  T  R  I  R  A  S  G  M  E  K  I  L  L  R  K  P  L  L  N  R  S  C  T  V  R  F  G  F  N  R  S  S  N  V  G  S  *  H  W  M  G  K  P  K  K  K  T  *  C  </first_frame>
            <second_frame>  F  F  Y  V  I  I  E  R  H  T  T  G  *  L  L  T  L  V  S  K  *  H  C  C  A  E  G  I  L  I  P  P  I  L  Y  S  C  *  Y  K  Q  F  G  D  Q  T  I  G  F  R  C  R  V  G  W  P  H  Q  I  *  N  P  W  K   : G  F  A  A  L  R  C  V  D  G  H  M  L  G  L  Y  Q  P  S  *  G  I  L  E  T  T  T  C  R  *  K  *  S  R  L  L  *  Q  G  K  L  V  S  Q  H  R  F  C  I  R  V  Y  C  *  K  R  E  S  T  L  V  H  G  G  E  A  H  I  G  S  V  T  A  R  N  N  Q  Y  S  S  *  I  P  T  V  F  V  F  D  V  L  F  W  L  S  F  C  V  T  *  C  F  V  F  T  N  M  N  C  G  A  P  P  L  T  R  G  L  G  F  E  L  P  V  W  R  K  F  C  *  E  S  H  S  *  I  G  H  A  L  Y  D  L  D  S  I  G  A  P  T  W  A  P  D  T  G  W  E  N  Q  K  K  K  H  D  V </second_frame>
            <third_frame>   F  F  M  L  L  L  N  V  I  Q  L  V  S  C  *  L  *  F  Q  S  D  I  V  V  Q  K  G  Y  L  S  L  L  S  F  T  V  V  D  I  N  N  S  V  T  K  L  L  A  L  G  A  E  L  D  G  P  I  K  Y  E  I  H  G  K  :  V  L  L  L  *  G  V  W  M  D  I  C  *  V  F  I  S  R  P  K  A  S  S  K  Q  P  L  A  G  K  S  N  H  D  F  C  N  K  A  N  W  F  L  S  I  D  F  A  F  G  C  T  V  E  R  E  N  R  L  L  Y  M  E  V  K  H  I  *  G  V  L  Q  Q  E  T  I  N  T  V  A  E  F  L  L  Y  L  F  L  M  F  C  S  G  Y  P  F  V  *  H  D  V  L  Y  S  P  T  *  I  V  V  L  H  P  *  P  E  D  S  D  S  S  F  R  Y  G  E  N  F  V  E  K  A  T  L  E  *  V  M  H  C  T  I  W  I  Q  S  E  L  Q  R  G  L  L  T  L  D  G  K  T  K  K  K  N  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059A10.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119422" stop="119616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVLVILLCNMMFCIHQHELWCSTLNQRTRIRASGMEKILLRKPLLNRSCTVRFGFNRSSNVGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 192 chains have been computed
$ 
$ memory statistics:
$ 1303016 bytes spliced alignments in total
$ 119 spliced alignments have been stored
$ 10949 bytes was the average size of a spliced alignment
$ 28296 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1572 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 261 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 18:14:47
-->
