<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 20:41:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340349" ref_strand="-" ref_description="SGN-U340349        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) | chr3:7160683-7161997 FORWARD | Aliases: K10D20.5(evalue: 4e-42, score=169) genbank/nr: gi|34896628|ref|NP_909658.1| hypothetical protein [Oryza sativa] gi|12583793|gb|AAG59645.1| hypothetical protein [Oryza sativa](evalue: 2e-42, score=176)">
      <seq>cttttttgatctctgaaatcttgactaaaaatttgctaaaaaaaataaaaaaatcaaatcttggtaaaagatgcatgatttctgctttacgatcccttatgggttaattctggtgactggtggtgtcatgggatatgccagtaaaggaagcacagcttcacttgctggaggtgttggtactggatttgctctgatcttagcgggttacttgagtctgcaagcatttcacaaacgcaaaaattcatactttgccttgattcttgaaactgcttgtgcagccatgttaacatgggttatggggcagcggtacatgcaaacttcaaaactaatgccggctggtgctgttgctggtatcagtgcactcatgactgggttttacctgtacaaaattgccacaagaggaaaccattttccacttaaaactgagtaataccatattatttattttggggttccaatttcatactgtatgtatcaagctaaaaatgtattcttattttatactcaattttatagaattcaatggatcaactcttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="6922" stop="9687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7222" g_stop="7490" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7491" i_stop="8555" i_length="1065">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8556" g_stop="8643" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="357" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8644" i_stop="9207" i_length="564">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9208" g_stop="9390" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="540" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U340349" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340349" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7222" e_stop="7490"/>
          <exon e_start="8556" e_stop="8643"/>
          <exon e_start="9208" e_stop="9390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTGGTATTACCCTTTTCATTTCATTAGAAAAAAACTGCATCTCATATTGGCCAAGCTTGGATCTTTTCTGTTTTATTGTGCTGAAATAGTATTGAATCACAGTTCTTGATTGTGTTATAGCCTCTCATTTATGCTTGTTGTTCTTGAAACTAGGTAGGAATAAAGCATGTGTACACTCTAGCCTCCCCAGACCTTCACTAGATCCGAAGACTAGTTCTAGTTTAGTATTTCTCCTCTTAAAGAATGAAATCTTCTTTGATTTTTGTCCTTCTAAGAAATCGACTGTCTCTCCTGAGCAAAAATGAGATGCAACCCTGGTGTCTTTGTTCTTGTGTGTTTGTTTCTTGTTTGGACCTAAAACTTGATGTGAGCTGTTTGTTCTTATGTGGATACTATCATTGGAAGGTACAGTACTTTAGCATCTAATTGCTATTAGGTTTCCTTTAGGGTTCATTTACCTTTCGAGTATCTGCTTGTGTGTTTCACAGATGTTAAGTTGGAGGTTGGAGCAGATCATTAATATTGGTTGAAGTTTGGAGCAACTATTAACAAAAGAGAACTTCAAAAATATCATGTTATATGATGAACTAAACAAGGTCAAAAGATATATGATTATGCATGTTTCCTCTCAGCATCTCCTTTAACAATGATCAGAAGTATTGTGCAAACCACCATCCTTTGAATGAATTCTGTGATAATCGTGGACTCTCTACCAGTTAGTTGTGTCAACTGCAATCTTAATGTTCAAAAATACAACTTTCCAAGTGAACATTTAACTCAAAAATAACAGTCGATTCATCAAGTTTGAAGCTTTCCAGGGAGTACATGTAATACTATAATAAGCTGTTTTGACCTTGATCAGAACTCTGTAGTTTTCCTACTTGGTGTGTTGCTTAGACGAAATAGAAATGCTAACGCGGAGAGAATATGTTTTTGTTTGTCTGATGGTAGGTTTGATGTCCTTCTGATTCAGATAAGAAAAATCAAAATCTCATCTTTTTTGCTTCTGTTAATGAAATTGCTTTGTTTATTATAGTCGCGCCACTCACTTTACTCGATTCCAAACAGCTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAGGTAACTGCAAATGAAAGCATACCATACTCAACTTGCTCCTTGGTTGCTGTATTTTGTCTATCTTTTTTAAGTACACTAGGTTTGTGAGGTATGACAAATTTTATCATGGCATATCACAACCACATACCCAGTGTAATTCCATAAGTGAGGTTCAAGAGGTTAGAGGTTGTGTGGAATCAAGGCATCACACAGGATGATAATAAATGGAGATTATCGGTAGCAAAGTGTCGGATCCTTGGAAAATGCACTACTTTTTGAGGATCCGACTCAGACTAGACGATATTTTTAAAGAGTCCAAGCAACATAAGGTAACATTGCACAAGGCCTGCAGTTGCAATGTGTCTCTTTCTATTACTCGAGCCAAGCTTGCACACATCGACTATCGAAAAGTTATAATCATAATATCAGGACTAGCTTGCGAGCACCTCGACTAAAATAGTCTTTGTAATTGATTTTCTTATATCTGTGGTGTCTGGACCAGTTTGCGCAGCTCGATCAAAGTGTTTTTGTATCTTTTATATGAGGTTGATGTTATATTTATTTTGTTTTCTCACTTTTCTGCAGTGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTATTT</genome_strand>
        <mrna_strand>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345144" ref_strand="+" ref_description="SGN-U345144        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to liver stage antigen-1 (GI:510184) (Plasmodium falciparum); similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) (Dictyostelium discoideum); similar to liver stage antigen (GI:9916) (Plasmodium falciparum); similar to Kinesin-like protein KLPA (Swiss-Prot:P28739) (Emericella nidulans) | chr1:18774605-18778354 FORWARD | Aliases: F17J6.18, F17J6_18(evalue: 6e-47, score=172) genbank/nr: gi|15223613|ref|NP_175481.1| expressed protein [Arabidopsis thaliana] gi|25405391|pir||C96543 unknown protein [imported] - Arabidopsis thaliana gi|9454546|gb|AAF87869.1| Unknown protein [Arabidopsis thaliana] gi|12322324|gb|AAG51180.1| unknown protein [Arabidopsis thaliana](evalue: 5e-45, score=172)">
      <seq>aacaggaagctgcttcggtgaatattcgtgatatcagtgagttcacttatgaacctccaaatccagatgatatattctcagtgtttgaggaccttaattttgtcgaaagtaatgaaagggaggttgagccatgtcctgcatacagttctgctagccatccctccaaaatttgcacattcagtcctgatgacggtgtatacaacaaagacaacttcctcagacattctcttgcgtataatcagagtgatttagaggaagaaggaagtgaatgggaaacagtgagccatctcgacgagcaaggttctagttattctgctgaaggaagcgtctgttctgtcaacaagaactgcaggcacagcaatgcctcaatggagataagtgaagtatattcagggcaaggtcgacaacttaagaaggtgtcatctatatctaggctttggaaatcaaacggagacaactacaaaaagatatcagctgatggaatacacgggaggctatcaaatggaaggctatcgaatggtgccaccctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29091" stop="30223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29391" g_stop="29923" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U345144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29391" e_stop="29923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCT</genome_strand>
        <mrna_strand>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327841" ref_strand="+" ref_description="SGN-U327841        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to liver stage antigen-1 (GI:510184) (Plasmodium falciparum); similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) (Dictyostelium discoideum); similar to liver stage antigen (GI:9916) (Plasmodium falciparum); similar to Kinesin-like protein KLPA (Swiss-Prot:P28739) (Emericella nidulans) | chr1:18774605-18778354 FORWARD | Aliases: F17J6.18, F17J6_18(evalue: 7e-14, score=73.6) genbank/nr: gi|50928857|ref|XP_473956.1| OSJNBa0053K19.22 [Oryza sativa (japonica cultivar-group)] >gi|38344183|emb|CAE03514.2| OSJNBa0053K19.22 [Oryza sativa (japonica cultivar-group)] (evalue: 5e-13, score=76.6)">
      <seq>cgaatggtgccaccctttctccagattgtggttctagtaaaggcgaattcagtccttcagggagctcacttgactcgggcaatccacaaataacacgagggatgaaagggtgcattgagtggccgcgtaactctcacaagcacagtttaaaagcaaaacttctggaagcaagaatggagagccagaaggtccagttacgtcacgtcttgaaacaaaagatctagaagactactgctacaagttttgattttgcccgaatcatcggtctcactcagctgaggtatcaataaaaactcaaacagtagtagtccacattttatgcttactgaaacttctttgtgtatcaatcagaactgctatatagtaatttcatgtaatgtaatttagaagatgcattattggccactatttatatcttttaaaggtatgatttagtggccaattattgcatcatttaacagaagtttcagtatgaggagaaaacaactttgtataattgaattcctttattccttaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29604" stop="30719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29904" g_stop="30418" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="533"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U327841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29904" e_stop="30418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</genome_strand>
        <mrna_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313029" ref_strand="-" ref_description="SGN-U313029        Tomato 200607 #1 [116 ESTs aligned] arabidopsis/peptide: | Symbol: None | OTU-like cysteine protease family protein, contains Pfam profile PF02338: OTU-like cysteine protease | chr1:18778532-18780621 REVERSE | Aliases: F17J6.19, F17J6_19(evalue: 2e-98, score=356) genbank/nr: gi|15223615|ref|NP_175482.1| expressed protein [Arabidopsis thaliana] gi|25405392|pir||D96543 unknown protein [imported] - Arabidopsis thaliana gi|9454545|gb|AAF87868.1| Unknown protein [Arabidopsis thaliana] gi|12322327|gb|AAG51183.1| unknown protein [Arabidopsis thaliana] gi|27754685|gb|AAO22786.1| unknown protein [Arabidopsis thaliana] gi|28393989|gb|AAO42402.1| unknown protein [Arabidopsis thaliana](evalue: 2e-96, score=356)">
      <seq>actcgtctttccactttcaattgttgtcgaattaaagcaattccctgttttctggttgaagatggaaggttcagtagtaagaagagtgattccatctgataacagttgtctttttaatgctgttggttatgtgatggaccgtgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttcttgggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaattttttctgtacagagagatgggactgtaggacctgcggagaggcttgctcttaatctggttaaggaccaacaaaggaagaggagctatactgacacagccaacttcacgttgcgatgtggagtttgccaaattggggtcattggccaaaaggaagctgtagagcatgcacaagcaactggacatgtgaacttccaggaatacaaatgaaagaaacaagaaacaaagcaaaacataatcgtttacttctttgtaccggtgaaaaccaatttcatgcaactgtcaagtagatttcatttctaatcgaaaggtgtgtgatttctgttaatttgttgatgcattgttgtgctatagaaattgtgtcccattttagacagaacaaagtgaaacagagatacttaaagtgtgtattagtggaagaaatacaactttgacatgtattcgcatttcttgttgatgtatttgagacaagtactatatgctattctaatgtgtcatttgactttgagctttgtattactttttttttttttttttttggttataaactcgatgaattcttattatggggactgaaagagcccttttttaacagaatttattcatgctgcactctgcaacaatggagattagaatctgcagcagagtatcaagagactctgaattaaagacttaaatctcctttatttaactttaatttttgaatctaaagtcatagctgccatggaagttgaagactttaatctgtttaacacactgctatgcaatcaatttcaatttttgcattcagaggtaatcctgctgcttgaaaagttgaacgtgctggtgcaggatctggaaaatatttagcataaattgcattgactttctgaaagtcccctagatcagccaacataattgttgttttaacagctgcagaatagctaacaccgccagctttaagtatctccccaatatttttcagagcctgttctgtttgatcctccacattgtctgatatgagttctccagtctcaggaataagacctagagaaccagatacataaatgaaattattagccttaattccttgagaatatgggcccactgcagctggtgccttatctgtactaatttcctcctttttaccggtactggctaagcaaacgaaaggaacgcgcgaattagcaactgacacgcgtccaattccgatggccatcggagtacggttgtgcccggcgtttgcagccatggccggcatacaaaagcttcccggtgcgacggcgaacgccattttaaataattttaaatatactaataattcacttactgaatagtgtagtaactaaatacattgaaagggggagaagaagtgaaaaataaaatgatagcattatacaacattctcctgtttctgtgttcatagaaaggacagatgactggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32784" stop="40222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33084" g_stop="33137" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33138" i_stop="33389" i_length="252">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33390" g_stop="33461" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="172" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="281" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="373" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="436" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36996" g_stop="37114" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="555" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37115" i_stop="37369" i_length="255">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37370" g_stop="37445" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="631" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="37446" i_stop="37528" i_length="83">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="37529" g_stop="38221" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="1321" r_length="690" r_score="0.977"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38222" i_stop="38789" i_length="568">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38790" g_stop="38841" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1322" r_stop="1373" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38842" i_stop="38931" i_length="90">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="38932" g_stop="39003" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1374" r_stop="1445" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="39004" i_stop="39099" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="39100" g_stop="39150" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1446" r_stop="1495" r_length="50" r_score="0.961"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="39151" i_stop="39230" i_length="80">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.745" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="39231" g_stop="39341" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1496" r_stop="1606" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="39342" i_stop="39725" i_length="384">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="39726" g_stop="39920" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1607" r_stop="1801" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U313029" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1805</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313029" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33084" e_stop="33137"/>
          <exon e_start="33390" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37114"/>
          <exon e_start="37370" e_stop="37445"/>
          <exon e_start="37529" e_stop="38221"/>
          <exon e_start="38790" e_stop="38841"/>
          <exon e_start="38932" e_stop="39003"/>
          <exon e_start="39100" e_stop="39150"/>
          <exon e_start="39231" e_stop="39341"/>
          <exon e_start="39726" e_stop="39920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTGGTAAGTGCATATACAGATCTTGCAACTATTTTTGAATTTTTTCTGATTTGTTGTCTGAAAGATATCTCGTGTAATCTAGCTGGGGTTTTTTTTTGCGATTTTTTTGGGGTTCAATTTCTTGTAGCAACTGTTCATCCAGATAAAGGTTTAGTTTTTATGATTAATTTGACATTTTTGCTTATCTGGGTGTTCATGGAATTGGTGCTGTTGTAAAGAAAAAAACTGGAAATTTGAGTTCTTTACATTTTGTAGGTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAGGTAAGCGTTGCCCTTTTAAGCAGAAAATGACCAAGTTTGGTGTTGGGGGAGAATTTTGTAACGGCCAGGTGAACAAGTATCACGTCCTTGTTCTTATGCTGCTTCGGATTTATGGTTGGGTCAAAACATTATGTGTTCTAACTCAGAGTTGCCTTACATTTTTATAATAAAACGTATTTTGCTGTGAGGAAATGAATAGGAACTACTTACATCTACTTATCACTTTGCTGTTTATCTATTATTGCTTCATTGCAGGAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAGGTTCATATCTTGCTTCTTGTAATCATTCAGCCTACTTTCTTAAGCTTGCAACTTCGTTTGCTAAAAGTTGCATTCCTATGCAGGAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTTGAGCTTTGTATTACTGTAGCTACGATCAGTAAACGTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAATTTCAATTTTTGCATTCAGAGGTAATCCTGCTGCTTGAAAAGTTGAACGTGCTGGTGCAGGATCTGGAAAATCTGCAACATTGATACATATCCATGTTAGTACATAATAATAGTAATATGCTTTATTTGAATCGAGGGTCTTTCGAAGATAATCTCTCAACCTTCGGTAGGTAAAGGTAGATTTGCATACACTATATTTTTTAGACCATACTTATCAGAGTATGTTGTTGTTTACGATAGTGAATTTGTCGAAAATCCTTTGAAAACAGACGAGATAGAGGTAAGGTCTGCGTACGTTCAACCCACTCCATATCCTATTCGTGGAATTACATTGGATATGTTTTTTTTTTTTTAAAACGAAGATCAATCATCTCAATTCCTTGAAAGACAAGTCCCTAAATTCCTAAACTAAATAAGGCACTGATAATTGCGATCATAATATTATGACTCTTTTTTCTTTTAAGTTATAATTGAAGACTTAATACAAATAATCATTCAATTTTCGATACCCATATTCAGATCTTGACTTTGGTATGAAATGGTAACCTATGTTTTAGGTTAATTTTTCATAATTTCGAATTTGACCTAATCACACTTAATTATCAGTACTAATAATATTATGAAAGGTAGTTGTACTCACATTTAGCATAAATTGCATTGACTTTCTGAAAGTCCCCTAGATCAGCCAACCTGTAAGTTAATAATATTATTATTCAACATCAATAATCAAAATTAACTATATTATAAGGAAACACAAATAAAATTAATTATGTATCATACATAATTGTTGTTTTAACAGCTGCAGAATAGCTAACACCGCCAGCTTTAAGTATCTCCCCAATATTTTTCAGAGCCTGAAAAAATCATTATTAAACACAAGATATTTTGTGTTCCGTCGAACAGTATCATATAAATTAAAACAAAAATCGTAAGATTGATTATTCAAAAACCTGTTCTGTTTGATCCTCCACATTGTCTGATATGAGTTCTCCAGTCTACATTCAATCACAAAAAAATAATTATAAAAATATTAACCAATCTAATTAAGGATTTAAAAATGATTAATTATCACTAACCTCAGGAATAAGACCTAGAGAACCAGATACATAAATGAAATTATTAGCCTTAATTCCTTGAGAATATGGGCCCACTGCAGCTGGTGCCTTATCTGTACTAATTTCCTCCTTTTTACCTATAAAAATATCATAACAAAAACTTTAGACAAAGTAAATGATATTTTATTTTTGTTAGGTGAGAATAATCAAAAACACCATTAAATTTGACACTATTAATTTCATTTTTGAATAATTAACGGTTTTAAAAATATTGCTTTATTTGACTAATTAAAGCTAAATACACTCCTGATTTAGCAATATCACTGAAATATACTCTTAAATTCTCGAAAAGTTTAGTGGTGTTTTGAACGTTTCTCTCGATTTTTATTGAGAAATTGATGTTCGTACTAGAGTTTGAGGTCAGTTGCTATGTCATATTTCATATCGAGAATGTATTATATAACATGTAAAAGTGAACGAAACGAGTAATAAATAATAAAACAAAGGAATGAGATGTCAACCGGTACTGGCTAAGCAAACGAAAGGAACGCGCGAATTAGCAACTGACACGCGTCCAATTCCGATGGCCATCGGAGTACGGTTGTGCCCGGCGTTTGCAGCCATGGCCGGCATACAAAAGCTTCCCGGTGCGACGGCGAACGCCATTTTAAATAATTTTAAATATACTAATAATTCACTTACTGAATAGTGTAGTA</genome_strand>
        <mrna_strand>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTG............................................................................................................................................................................................................................................................GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAG...............................................................................................................................................................................................................................................................GAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAG...................................................................................GAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTTGAGCTTTGTATTACT-T--TTTTTTTTTTTTTTTTTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAATTTCAATTTTTGCATTCAGAGGTAATCCTGCTGCTTGAAAAGTTGAACGTGCTGGTGCAGGATCTGGAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGCATAAATTGCATTGACTTTCTGAAAGTCCCCTAGATCAGCCAACAT..........................................................................................AATTGTTGTTTTAACAGCTGCAGAATAGCTAACACCGCCAGCTTTAAGTATCTCCCCAATATTTTTCAGAGC................................................................................................CTGTTCTGTTTGATCCTCCACATTGTCTGATATGAGTTCTCCAGTCT-CAG................................................................................GAATAAGACCTAGAGAACCAGATACATAAATGAAATTATTAGCCTTAATTCCTTGAGAATATGGGCCCACTGCAGCTGGTGCCTTATCTGTACTAATTTCCTCCTTTTTAC................................................................................................................................................................................................................................................................................................................................................................................................CGGTACTGGCTAAGCAAACGAAAGGAACGCGCGAATTAGCAACTGACACGCGTCCAATTCCGATGGCCATCGGAGTACGGTTGTGCCCGGCGTTTGCAGCCATGGCCGGCATACAAAAGCTTCCCGGTGCGACGGCGAACGCCATTTTAAATAATTTTAAATATACTAATAATTCACTTACTGAATAGTGTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320275" ref_strand="+" ref_description="SGN-U320275        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360(evalue: 5e-133, score=470) genbank/nr: gi|15236947|ref|NP_194432.1| expressed protein [Arabidopsis thaliana] gi|7452424|pir||T04825 hypothetical protein F10M23.360 - Arabidopsis thaliana gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis thaliana] gi|7269555|emb|CAB79557.1| putative protein [Arabidopsis thaliana] gi|18650639|gb|AAL75889.1| AT4g27020/F10M23_360 [Arabidopsis thaliana] gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360 [Arabidopsis thaliana](evalue: 4e-131, score=470)">
      <seq>aaaactatgggttggcgaatctggaaatgagaatgataagggagaagatgttattgctatattgccttgggaagaatggtgggagtttgaggtgaaaaaagatgattccaatccacatattgcgttgctgcctttgcaccctgacctccgtgccaagtttaatgaaactgctgcttgggaatatgcaaaaagcatggcaggcatgccttatggttaccacaacttaatatttagctggatagacacaattgatggaaattacccctcacccttggatgctaatctggttgcttctgtcatgactgtttggaaccaccttcagcctgcatatgctgcgaacatgtggaatgaagccttgaacaagcgactcggaactaagaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattcttgagatgtacaaggaagcagggctatttggtgaatttgcaagctcaattcaggttacagaattcacgattaaagatgcttactctctcaagtttttcgagaacaattcaagccggttgccaaagtggtgcaatgcagatgataatgtgagccttcctttctgtcaaattcgaggagagtaccggatggaactacctgaatacaatagtatagatccgtacccccatatgaatgaaagatgcccatctatgcctccgaaatatttcagaccacaaagttgttgacaacggctttcctatcatcctcgtaatctcagaggttagaagcatatagtttttcactcatcagttctcaggttgtatacttgtagtacaatatcctagaatgcacaaggttgctgatgactataaacatatatggtgctcttatctaatagtttgtacaaagtttggtgttacacatcctgatcaatgttgccccgggccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48275" stop="43733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47975" g_stop="47936" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47935" i_stop="47047" i_length="889">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47046" g_stop="46801" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="286" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45912" g_stop="45820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45550" g_stop="45350" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="580" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44452" g_stop="44034" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="999" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1000" polyA_stop="1042"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U320275" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>999</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47975" e_stop="47936"/>
          <exon e_start="47046" e_stop="46801"/>
          <exon e_start="45912" e_stop="45820"/>
          <exon e_start="45550" e_stop="45350"/>
          <exon e_start="44452" e_stop="44034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAGGTAGAGTCCTAAACTATTATGTTTTCACATTATGTTATTATTTGGTGTTTACTCTTTCTTATATTGGGGAGCAAGGGCAATATCTGCTACACAATAAAGAAATTGAAGATTAGAAGGAGAATTGTGATAGAGAGAATATTATCTCATCTCTTTTCATACGAACGGCAATGTCTGCTACGGAATAGAGAAATTGAAGATTAGAAAGAGAATTGTGATAGAGAATATTATCTCATCTCTTTTCGTACTTTCTTGTTCATGTTCCTTAAAAACTTCAAGATTTATGTTTAGGGAATTCTGGATTTTTGACAAAGTAATAAGGAGCATTGATAGCGAATCAAACTTTTAGGGAATAAAGGGCTCTATCTCAAATGAATAAAAAAGAAAGAGATAAAAGTGATACACGTTGGAACAATTAATTTAAGGGATTAAAGTGACATTCAAATCAGCAAACTTTAGGAAAAAAATATCTCAAGTTTGTGATTGTGGTCTCGCAAGCCTTAAGCGACACTTTTTGTGGCGTATACAGCTATAGATATCAGTATGATTATTACAAATTTTTTGATAAGGCTATGAATATTACAACGTTGACTTCAAATATCACGTTGTATGAGTATCATATTAAAAGGTATGATCCTCATTCAACAGTTGCATAAACTTAAAGCGCAACTAACTAGATTGCAACTTGTGGACATGCAATAGACACATATCCAACGCATTAACAAATAGAAAGGGAGGTCTGTTTGCTGTGGTTCTGGGTATTTGACTCGGCCCAGGCACCTTGGGGGAGGTTGAAGATTAAGAAAATTTCTATGCATGAATGACCATATATTTGATAACGAAATCTCTATATCATATTTGCACCAATTTTATTCTTCACATTTCCTTTCAGGGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTGGTAATGCATATTATTTTACGGTACAGTCTTGCCAATTTTGTGCTTACAGCATTATATGAAGCTGCTTGCTTTCATACGGTCCTCTACTTCCTGATTCCTCTGGTTTGTGACTATACTCAGCTGTTCTTTGCTGGATTATGTCCTCACAAATAAACAAAATAATTACTAATAGAGGGTAACATAGACCTCAGCATATTTAGTTGCTCTGCTAGTGAAATAATATTGTTGGACATGAAGTAAAATTGGGTAAACGCATGCATTTCACACACTGGTTTCATGTATCAAACAGTATCAAAATTTCCATAAGGGTAATATCCATTTGAATTTTGACTTGATTTTATCATCAGTTTCTTCTCACAGAGCTTCATTTCACTGCTATTAACTATCTATAATGAGTCTAGTGTTGCATAGAACTCCACAAAGTATGCATGTGAAACTTAAGCAGTAAATAGATGATCGGTTAATATTTCGTGTCTCGTGAGAGCTAAAATAGTATTTTGGTGTAAGAAACTTGAAGCACCATAGAGTCGTGAATGAGCTTGAAATTACTCTTTGTGATATGAGATAGGCAGTTTGAATCAGAAATTAGGAGGATGAAGGGTGAGGAGTGGGAAGAGACGATAACGACATTAAGCAAGTAGAAATGCCAGGCGTTATAGATAAAGTGGACCATGTGGCACTTGGTTTTTGTATGTTCAATAATTGCTACTGTATTCCTGCAAATTGGAAGTGGCAGAGTGGCCTTGGTACCACGCTGCACTGAGATTCAGCCATTAGTCGCTCTCCTATTCATATTTTTTTTAAAAAAATAAAAAGATTCCTGCCAATTAAAAATTAACGTGTTACTTTATAAAATTGTTGCTGATGTTTAAGTGATGTGTGGTGCAGGTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAGGTTATGTTTTTGTATAATCACATTCATGAGATGCTTCTGTTTTTTGAGATAAAAACGGTGGATAATACACTATTTAAGCAGCTGATTGAGTAACTAATTTAAATATCAGAATACTGTATTTACAGAGATTGATGGCATAAAGCCATTGTTATACTGAAAATATACTGTGCTTTGTGAACTCTCATATATCTCAAGCGAAACTAAGTTAGTGTAGACCTCTATGACTGACTTGACATATACTACATGCTGATCTATATTGTTCCATGCAGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACGGTGAGTTGGTTTCCAGGACATTTGCATGATCTGTACTTAGATGAATCTAAAACTGCTTTTCCTTTTCTCTTGGTTGCCTTTTTGTGGATGGCGGGTGTTCTTTTTGTTGGGGGTGGGGAGTTTCAAATGTTTGTATATGTAGTGAGGTATCTTGCACTCGTTCTTCCTATTATTCTTCACATTCCTACTAAATACTCCCGTTGTCCCAATTTATGTGACACTTTCCTATATAGTCAATCCCAAGATGAATGACATATTTCCTTATGTGGCAAATGTTTATTGATACTATTTTACTCATGTTGGGTCCCACTTATTTGGGAAAATGTCGACAGAAGTGTATTCGTCTATTTAAAAATTCATTTATTTTAGGGGTATTTTGAACATTGCAAAGTCTTTCCAGTATTTCTTAAACTCTGTATCCATTCAAACTACATCACGTAAATTGGGATGGAGGGAGTACATGTTTTCAGCAATCCTTGCTACAATTCTGTATTAGTTCCAAATAAGCTGGTGTACGCATTGTTTGGGTTGTCTAAAGTTCAAACATTGTGTCCATTGTCCACTTCCCTAAAATAGGAAGTTTTTTACTGTACTCTTGCATACGTTTCAGTATCTTAGTGCCAAAAAATGTGGAAGTTAGGAACCAAATTTTAAACCAGAAGTATTACAATTCTTGGAAAGTTATCCAATCCTCTATCTTAATATTGCTCATGTTTGTGAAACTATTGCATCATTCTTTTATCATTCAGAAAAAAGAAAATTACAATTCTTGCACTACTTGTTTGCTGCTGACCCTGAGGTCTAATGGGTCATCTAATTGAAAAGCACATGGAAGTATCATGTTGGATTCAACTTTCTGGAGTTCGAAAAGTGACATATTTATTGCTGGGATTGCAGATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCTAGAATGCACAAGGTTGCTGATGACTATATACATATATGTTGCTCTTATCTAATAGTTTGTACAAAGTTTGGTGTTACACATCCTGATCAATGTTGCACAGGACAGA</genome_strand>
        <mrna_strand>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG.............................................................................................................................................................................................................................................................................AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCTAGAATGCACAAGGTTGCTGATGACTATAAACATATATGGTGCTCTTATCTAATAGTTTGTACAAAGTTTGGTGTTACACATCCTGATCAATGTTGCCCCGGGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320273" ref_strand="+" ref_description="SGN-U320273        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, gene F20P5.12 of BAC F20P5 from Arabidopsis thalianachromosome 1, PID:g2194125 | chr4:13568439-13571480 REVERSE | Aliases: F10M23.360, F10M23_360(evalue: 9e-79, score=288) genbank/nr: gi|15236947|ref|NP_194432.1| expressed protein [Arabidopsis thaliana] gi|7452424|pir||T04825 hypothetical protein F10M23.360 - Arabidopsis thaliana gi|4455225|emb|CAB36548.1| putative protein [Arabidopsis thaliana] gi|7269555|emb|CAB79557.1| putative protein [Arabidopsis thaliana] gi|18650639|gb|AAL75889.1| AT4g27020/F10M23_360 [Arabidopsis thaliana] gi|23505979|gb|AAN28849.1| At4g27020/F10M23_360 [Arabidopsis thaliana](evalue: 5e-77, score=288)">
      <seq>tccgagccaagtttaacgagactgctgcttgggaatatgcacgaagcatggaaggaaaatcttatggttaccacaacctaatatttagctggatagacacaattgatggaaattacccaccacccgtggatgctcatctggtggcttctgtcatgactgtttggaaccaaatagcgcctgaatatggttctaacttgtggaacgaagccttaaacaaacgacttggaactcagaaccttagtcttcctgatatacttgttgaagttgaaaagcgtggatcctctttcgccaaattgttggctattccagagcaagatgactgggtttatagcgacggcaagtcagcatcatgtgttgcttttattcttgaaatgtacaaggaaggaggactatttggtgaacttgcaaactcgattcaggttacagagttcacgataaaagacgcttatactctcaaccttttcgaaaacaattcaagccggttgcctaaatggtgcaatgccgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="58961" stop="56604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58661" g_stop="58522" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58521" i_stop="57682" i_length="840">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57681" g_stop="57589" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="233" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57588" i_stop="57393" i_length="196">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57392" g_stop="57192" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="434" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57191" i_stop="56978" i_length="214">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56977" g_stop="56904" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="508" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U320273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58661" e_stop="58522"/>
          <exon e_start="57681" e_stop="57589"/>
          <exon e_start="57392" e_stop="57192"/>
          <exon e_start="56977" e_stop="56904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTGGTAGTGCATGCTATTTTTTCTCTTACCATTTTTTTGTTTGCCCTATTATCTTGAAGGTGTTCCACATATACCCTTACTTTCTAAACCCTCTGGTTTGCGAGTATAGTCATCTCGGCTTAGGCTAAACTATGTCCTATGAAAATAAATAGAAAAATCACAACAAACAGCTAACTTAAATCTGAATTTCGGTTGATCAGCTAATGCGGTATCGCTGGGCACATGAAGTGAAATTTGATGAAGCCTTGATTTCATACACAGACTATTTAGCAATCTTTGTGAGTTGCTAATTGAAATAATAGAGGCCTCAAACTATTTTAGGTCTCATAGCTGCAGGTTTCATGTACTGGACACTATATAGATATTCATACAGGGGTGTTTTGAATCTTAGTGTGATGTTGTCAGTGAATCCATGGAGATTCATTTGACTGGTAGAAATATGCTACTATGATTCACGTGTTCCATATAATTACGTAATTATGCATGTGTGCTGAAGCAGTAAGTATTTGATTGGATTAGTATCTCTTGACAGCTGAATATAAACTTTATTTTAATGTAAAAAACTTAAGTACTGTATGATCATTTGTGAGATTGAAGTTAAGCTACGAAATATCACGTGAGACAATTGATATTAGAAAGTTGTTGATGATGAAGGGTGAGGGATAATAATAGGAACTATGGCACTAACAATTTACAAGAAGCAGAAATGACAGGCATTTTGTAGATAAACATGGTAGTTGTGGTACTTGGTTTTTGTGTTATCGATTGTATGCTTTTGTGTTATGAAATTACATGTTACTACTTTCTGTTATCGTTGTTTACAAACATGGCTGGGTGGTGCAGGTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAGGTTATATATAAATTTTGATCACTTCCATGAAATGCCTCTTTTCATTGAGACAATTAGTAGACTAAATATTATTGAAGCAGGTGCTAGGTATAATATGTTTCTCGTTTAATAGCTATTTAAAGTGGATCAAATTCCGTAATTACAAAGATTGACATAAAATTCAATATTGAATGCTGTTCCATTTTGTTCCACGCAGAACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACGGTGAGTTTGTCAGATAGATTTTGAAGTATTCTCAGTTTTCCTGATTTGGTTGGTTGCTTCGGCATTTGCCTTGGCCATGTACTTGATGAATCTTAAACTACCTTTTCGCCTTTTCTGTTTAGCATGCATGTCTCTTCTAACAAAGTTATCTTTCTATGTCGGACTCCAGTTCTAGAGTTTCAGGAATTGATGTCGTTTATTGTTGGAACTGCAGATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGA</genome_strand>
        <mrna_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAG....................................................................................................................................................................................................AACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACG......................................................................................................................................................................................................................ATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318219" ref_strand="+" ref_description="SGN-U318219        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13571957-13572928 FORWARD | Aliases: F10M23.370, F10M23_370(evalue: 2e-99, score=359) genbank/nr: gi|15236949|ref|NP_194433.1| hypothetical protein [Arabidopsis thaliana] gi|7485344|pir||T04826 hypothetical protein F10M23.370 - Arabidopsis thaliana gi|4455226|emb|CAB36549.1| putative protein [Arabidopsis thaliana] gi|7269556|emb|CAB79558.1| putative protein [Arabidopsis thaliana](evalue: 1e-97, score=359)">
      <seq>atttttcttggcattttgattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63246" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63546" g_stop="64652" g_length="1107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1107" r_length="1107" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U318219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1107</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63546" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>ATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336433" ref_strand="-" ref_description="SGN-U336433        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13571957-13572928 FORWARD | Aliases: F10M23.370, F10M23_370(evalue: 1e-67, score=253) genbank/nr: gi|15236949|ref|NP_194433.1| hypothetical protein [Arabidopsis thaliana] gi|7485344|pir||T04826 hypothetical protein F10M23.370 - Arabidopsis thaliana gi|4455226|emb|CAB36549.1| putative protein [Arabidopsis thaliana] gi|7269556|emb|CAB79558.1| putative protein [Arabidopsis thaliana](evalue: 7e-66, score=253)">
      <seq>gaatctcccattggggaattgacaattagggcaacgctgaatcccctgtttttggagcccaaattgatgcatttcaaggtccccataaatggccatggacaatcacccgacgggaattttttaacaatttccattccttagcaggggcagggacattcacagtccttccaatcaatattttttgcaaggatccaaatattttggggtttgtgggggtttgttcagggtgcattatgttcagccaacagtttcatttttgggctcatggtacgaaaagtaagttaccttcaatggggttagcattacaagacgccggaatatttgtattgggggaaaaacacggtgatcatcatcgggttccgtaaaacaacaattactgcattgttaggggaatttggaactcgattttgggggactcgaagttttttgagctgagggggaggatttttttttttaaattgggagtttggccaagatcatggggtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttttgtttcccattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttatattttattttttccgattagtattgaaatgatattgatataccccccgaataagcatcctcccctttcaactataagaaaaaaagttcgggttccctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63749" stop="65068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64049" g_stop="64757" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="754"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U336433" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336433" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64049" e_stop="64757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACACCACGAATAAGCATCCTCCACTTTCAACTATAAGAATATAAGTTCGAGTTACATAAAAAAAGGAA</genome_strand>
        <mrna_strand>GAATCTCCCATTGGGGAATTGACAATTAGGGCAACGCTGAATCCCCTGTTTTTGGAGCCCAAATTGATGCATTTCAAGGTCCCCATAAATGGCCATGGACAATCACCCGACGGGAATTTTTTAACAATTTCCATTCCTTAGCAGGGGCAGGGACATTCACAGTCCTTCCAATCAATATTTTTTGCAAGGATCCAAATATTTTGGGGTTTGTGGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTTTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATGGGGTTAGCATTACAAGACGCCGGAATATTTGTATTGGGGGAAAAACACGGTGATCATCATCGGGTTCCGTAAAACAACAATTACTGCATTGTTAGGGGAATTTGGAACTCGATTTTGGGGGACTCGAAGTTTTTTGAGCTGAGGGGGAGGATTTTTTTTTTTAAATTGGGAGTTTGGCCAAGATCATGGGGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTTTGTTTCCCATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACCCCCCGAATAAGCATCCTCCCCTTTCAACTATAAGAAAAAAAGTTCGGGTTCCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316042" ref_strand="+" ref_description="SGN-U316042        Tomato 200607 #1 [20 ESTs aligned] arabidopsis/peptide: AT3G20410.1 | Symbol: None | calmodulin-domain protein kinase isoform 9 (CPK9), identical to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi:1399265:gb:AAB03242 | chr3:7116207-7119127 FORWARD | Aliases: MQC12.23 (evalue: 0, score=753) genbank/nr: gi|14029712|gb|AAK52801.1| calcium-dependent protein kinase CDPK1 [Lycopersicon esculentum](evalue: 0, score=997)">
      <seq>tttttattttttagtcaatttctttgtcccattttccatttttagctgtaaaaatggttggttgttgattttttctgataatttttctgttttttttttgtgtcaactccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattttggtgtagtaaaaatctaatcttgctggatacccatctatgttcttggtttgattcttgatttttgcaccctttttagtttaatcaagtttagtttaagttgtatcagctatattttgctagatctgctttaatgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgcttgtaaatcgatatcgaaaaagaagcttgttactaaggctgataaggatgatatgaggagggagattaagattatgcagcatttgagtggacaacctaatattgttgaatttaaaggtgcttatgaggataaaggttcagtgtatcttgtgatggagttgtgtggagggggagagctattcgataggattatagcaaaggggcattacagtgaaagagctgctgcaacaatgtgtagggctattgtcaatgttgtgcacgtttgcaattttatgggcgtgttgcatcgtgatctcaagcctgaaaactttttgttgtctgataagagtgaaaatgctgctctaaagattactgattttgggctgtcggtattcattcaagaaggtaagtcgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73362" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73662" g_stop="74640" g_length="979"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="979" r_length="979" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75607" g_stop="75750" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1123" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1124" r_stop="1276" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1392" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1393" r_stop="1560" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1561" r_stop="1688" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1689" r_stop="1788" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1789" r_stop="2151" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U316042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2151</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73662" e_stop="74640"/>
          <exon e_start="75607" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAGGTATATTTGGCTTTACATTGTCATTTTATGTTATGTACGTACTTTTGGACAGAGTTCTTTAATTGTTAATTCTATTGCATTGAAACACAATTATCAGTCAAATCACTAACATTTCCGTGTTTTACAGATTCGTGTCTTCTGGATCTTAGTGAACATGTCAAGGCTAAAATTTTGATCTTTAAGTTCAGGGTTAGGATTAAGTATTTAGCTAAAACGTTATCTTTAGAAGTAATCACAGTCACATGTGGATTTCTATTTACACCTATGTTAGTCTTGTATATCTTATGTCCTCCATTCAAGTGTCATATTTGACATCCACGGGGAACATTTAAAGGGAACTTCTTAGTTGGATATAAATAATCGACAAGCATATATGAGTACTCAGCTTATCATCAGATAGTAAGCAGGTTGCTGATTATTGTGCTTTTCTTTTTAATTTACGAAATCGTTGCACTGCAAGATCGGATGAGAATATGCAGAGAAAACATTAGTTTTACTAGATTGAATTTGCAGCCGAATTTAATTCTATCCCATTCAGTTTGTAGAATGAAACTAGTAGTTTTTAGCCCGATAAGTTGATTGTTCACCTTTTTAAATCAGCATGTAGGTGTATTCTATTTGTGACACTAGGTCCGCGTCAGAATTTTATAGCCTGACGTAATCGGCATGCTATATTGTATGTACATTTATGAAACAGTAGTTGCATTTTGCACACTCACTGCATACAGATTTTGTGTATTAGTAAGCCAATTATTGACTACTTCAGTTGTGATGAATGCCTTCCCTTTTTACAAATATGTTGAAGTACCATGCCTTGGCAGTTCCTTTGTGATTTTCTTATATCTCTTTACTATTACTAACCTTGCCGAATTTCTTGATCTTCTTCTTATCCTGACTACTACTAACATAGCTTGTATCTGCTAATTTTTTTTCTGCTTTTATATATGGATATGAAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316045" ref_strand="+" ref_description="SGN-U316045        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G20410.1 | Symbol: None | calmodulin-domain protein kinase isoform 9 (CPK9), identical to calmodulin-domain protein kinase CDPK isoform 9 (Arabidopsis thaliana) gi:1399265:gb:AAB03242 | chr3:7116207-7119127 FORWARD | Aliases: MQC12.23 (evalue: 6e-13, score=70.9) genbank/nr: calcium-dependent(evalue: 8e-14, score=79.7)">
      <seq>aacatatagcacttgcatactccttcatttctagtagttattagtagaaaacaatttcttaggcatcgtctctcagtcgatcagattattctgctttatctcacccaaggggcctacctgctttcctttgcaagatctttacttttatcttcaattacggttggcttcttgagctggatttgttatcaagtaaaccacagttgtatcttcttgtgaaaggagttagacatatgatggggccaaaaccaagtccttgccgccaaaattagcttatatagagatcaatctgtttctggcctgtaagttctaacagcgtcatttctagctttaggatatgccaaataattttagttctgcgcagtcttatactctgttaaagagcctctcttgatttcacaaatgccattatatatctgaatagcatgattttatgtttggactggtgattatacatgtgttgccagtatggtttgttatatcttattctaaccatactgttggtgcgtgtaattgacagagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75805" stop="77034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76105" g_stop="76734" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U316045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76105" e_stop="76734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</genome_strand>
        <mrna_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335451" ref_strand="-" ref_description="SGN-U335451        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G04720.1 | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative, similar to calcium-dependent protein kinase(CDPK) (Carrot) SWISS-PROT:P28582 | chr4:2394456-2397757 REVERSE | Aliases: T4B21.13, T4B21_13 (evalue: 1e-45, score=179) genbank/nr: gi|14029712|gb|AAK52801.1| calcium-dependent protein kinase CDPK1 [Lycopersicon esculentum](evalue: 2e-59, score=232)">
      <seq>agcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacatttgatgtttaatgagttgtgtcattcattcattgaggttcattttagtgaagatattaaatcagcttcatttttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77062" stop="78628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77362" g_stop="77378" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="145" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="245" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78332" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="693" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U335451" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77362" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</genome_strand>
        <mrna_strand>AGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346927" ref_strand="+" ref_description="SGN-U346927        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttgattagtctttctaaaggttagtttattcctctattattttcagttttaagtaaattttggttttttttgtgtgtgtagtttatcttgctagtagagtcatgttggtgttttttgtttttgttttttggttgattagacatttttaactttgtgggttgttgggttgtggtctgtttgtggctttagtcaatcaaagtttggattttgatacttggatcatctatgttatagttaaagatggtctttttcagcttaaagttagttggttttttttttaactttgttaaatttggactttgcttgtatgtgcagttttagtcaattaaagttaggatctttggattctctatggatgattgcaattttatttagttgggaacttttgatatgtttgatcttgatgtgttctcatctctgatctagttgtggtagacatggttatcttgtacctgtgggcggtgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="80661" stop="79592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80361" g_stop="79892" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U346927" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80361" e_stop="79892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGG</genome_strand>
        <mrna_strand>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATGGTTATCTTGTACCTGTGGGCGGTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323130" ref_strand="+" ref_description="SGN-U323130        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13548552-13550721 REVERSE | Aliases: F10M23.320, F10M23_320(evalue: 2e-50, score=196) genbank/nr: gi|30687441|ref|NP_194428.2| expressed protein [Arabidopsis thaliana](evalue: 1e-48, score=196)">
      <seq>ttaggtcgaaaattaaacccaaaaaaaaaaaagaaaaggaaacaagtctccggcgaagaaattcccaattcaccccgtcggcgtcgaacctgaatcagcttctcctttgaattcaatcagttgatggacaaagcaaaatcccttgaattcatcgctgtcgtatagaattctctggtcaagtttgacaagaatcctaattcagaagctaaaatttacagcccttctttacaagcatctgtattagctattatgaatatgaagaaaaagcctcttagcttggttagcttgtgtcttggagttattggtagacattttgaggatatcattgaagacctcgccgagatagctgctattccgtccacaatgaagatggcacttgtggcaattgcaagaaggagaaggttattgaatgacgatgtcattgttgcattggctgatagctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcggagtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="86745" stop="90479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87045" g_stop="87282" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87958" g_stop="88088" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="369" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88634" g_stop="88803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="539" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89295" g_stop="89372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90026" g_stop="90170" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="762" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U323130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87045" e_stop="87282"/>
          <exon e_start="87958" e_stop="88088"/>
          <exon e_start="88634" e_stop="88803"/>
          <exon e_start="89295" e_stop="89372"/>
          <exon e_start="90026" e_stop="90170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTGGTATGTTTCTCCGGTGAAACTATTTCCGGTAGACCTTTTATATGCATAATTTTCTGCGAAAGGTATCTATCTACAGAAAGAATAGTGGGTTCGGAGTATTAATTGATTACATCTATTATTCTGTGTGATTTGGAATATGATTTTGTTAATTTTTGGGAAATATTGTTTGGTGTCGTCACTAGTAGTAGAAAACAAGACTTGAATCAATTCAGTGCAATTGTGAAACAAATTCGATTCCAACACAACCACTTATATATATTATTTACTGAATACTAGTTACAATGTAGAATACGTACAACAAAATAATAATAAACTAACTAGGGAGAGATTAACGGAGAAAGAAGTAACCAGAAAGGGATGAGATACAAGACCATAAAAAGGAGATGAGAGGATCTGAAAGTGAAAGCTTCGACATAATAGTTGTCATAACCGTTCTTCTAACTCCTAGTCCTTTTTAACAAAGTATAAAATGGGCCTGGATCGCGATTAAAAATCTCTAATTTCCCGTATGTCCTTACAGGTTCAGTTTCGTTCACAAGAAATTGTTTTGATTTTGTTGTGAGCAGAACTCCAGATGTTTGTTCATTTGTTCTGTTTTGTGGATCACATGAAGTTCTTGTAGTTGTGGGGCTTTTAATTGTGATGAGTTAATGGAGTTTGATGGTTTTGTTACAGTATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAGGTAAAAGTTTGTATGCCTGGTTTTATACATATTATTGGTTGTAGTTATTCTGAAAATGTACCCTTTGATTGATGCAAATACTGCTAGATTTAGTTGGCAATCGTGTACCCGAGAACTTTTGCTTCTTAACTTTTGGAGGCTTTTGTGCTTCCATTAAATGTATATTCTTCTTCAATTCCCTTAAGATAATAAGGGTTTCGATCCATAAAATGGCATACTATTGATGTCCTATTCCTAGTCACGCAAGTTTAGTTTGTTGCAATTTTATTACACCACTATATTAAGGGTGAACTTAATAGTGAAGGAATGTTTTCTTGAAATCTTTCATCAAACTTTTGACTAAAGACTTGCTTCTTGGCTATCAAAGAATACATTATTTTTTTCTTCGGTGGTGGCAGTGAAGGTTAAATAAAAAGTAAAACAAAGCTGTCAATCCATGCTATCTTGCAAAACTATTTAATGAATGGAAAATGTGGATTACATCCTAGCTTGTCCTTTTGACTCTGATTTTTCTGGTAACTGAAACAATCTGTTTTAATTGTTAGATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGGGTAGGTTTTCTTTCTTAAATCAAGTCACTTTTTTCAGTCATGAAGCATAATACATCGTGTGTAACAATGAAAAAATCTGGTCCATTGGACTTCGCCTAAGCTAATATTTCGTAAATGACTGTCTGGTTAACCTCGAGTCCACTGATGCAACCATTTGGGTTTCTTATAACTTGCTTAGATTCTGTGAACCTTTCCACGTTAAATAATGTTTTTTTTCTAATGAGTACATTCAGTATTAAGATTCTTCTCAAATATGTGCGTAGTGTTAGCATTCATTGGATATTTTTTAGATATTTGAACTTGCCTTACTTAAGGATACTCAAATTTGATGCATTTGTTTTTTCTGTGTGCATATAGTGTAAGCATTCGTTTACTATTTTTTAAGATTCCTGTGGATAAAGTAAAATAGTATATGCTGTTATTGGGGATAGAACACACAACCTCAAGCTATATTTAGGAAAGAACCTTGCATCTTTCAACTATTTACACAAATGTCATTTGAAGTTTTTTCTATGGAAGAGATCTTTTGTAAAAATCTAGGTTCATCATATATTTGCTGGGTAAAATATATTTCAAAGATATACACTCTCAACAAATAAGGAAAACGTAGAAATTAACCACATAACAAAAATGAATCAAATTTAATGTTGCAGAGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG</genome_strand>
        <mrna_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323131" ref_strand="+" ref_description="SGN-U323131        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:13548552-13550721 REVERSE | Aliases: F10M23.320, F10M23_320(evalue: 1e-66, score=220) genbank/nr: gi|7269551|emb|CAB79553.1| putative protein [Arabidopsis thaliana] >gi|4455221|emb|CAB36544.1| putative protein [Arabidopsis thaliana] (evalue: 2e-66, score=225)">
      <seq>ctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataaggccacgctttcacctatttcagtcctttttccgctgctcaacttaaatttggttttgaaatgtaaacctaaatatgaacatccattgtcacagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcggagtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaaggaccagctggagattctgtctgaagaatgcccacgagtcatattaaatccaaagccatcgccactcggttacagggggcttgatatacctagagaagcaagactagatgtttcattagatgatcccattgttgaagatattgaccccaaaacctgggcagtttctagatttgtacctagagcatcaccatcatcagtttcaagatcagaagatttgcccattgcggagaagtttagactgcatttcttgagagagatactagactagcaccaaagcgagcaaagaatgcaagacaacaccaacgacgtgcagaaaaggaatgggtaacgatgaatagtagggcaaaagcagtagcacttgcctcactggcaagcaaatccttgaacatccggaactgaaaataaatgttttacttatacgaaacccgtttttgatctctgtcagtcaacaatacaaaatgcttctgtatatactctttcaggcaaggacgccgtcaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="88405" stop="91423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88705" g_stop="88803" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88804" i_stop="89201" i_length="398">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89202" g_stop="89372" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="270" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90026" g_stop="90170" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="415" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90606" g_stop="91123" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="932" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-U323131" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88705" e_stop="88803"/>
          <exon e_start="89202" e_stop="89372"/>
          <exon e_start="90026" e_stop="90170"/>
          <exon e_start="90606" e_stop="91123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGGGTAGGTTTTCTTTCTTAAATCAAGTCACTTTTTTCAGTCATGAAGCATAATACATCGTGTGTAACAATGAAAAAATCTGGTCCATTGGACTTCGCCTAAGCTAATATTTCGTAAATGACTGTCTGGTTAACCTCGAGTCCACTGATGCAACCATTTGGGTTTCTTATAACTTGCTTAGATTCTGTGAACCTTTCCACGTTAAATAATGTTTTTTTTCTAATGAGTACATTCAGTATTAAGATTCTTCTCAAATATGTGCGTAGTGTTAGCATTCATTGGATATTTTTTAGATATTTGAACTTGCCTTACTTAAGGATACTCAAATTTGATGCATTTGTTTTTTCTGTGTGCATATAGTGTAAGCATTCGTTTACTATTTTTTAAGATTCCTGTGGATAAAGTAAAATAGTATATGCTGTTATTGGGGATAGAACACACAACCTCAAGCTATATTTAGGAAAGAACCTTGCATCTTTCAACTATTTACACAAATGTCATTTGAAGTTTTTTCTATGGAAGAGATCTTTTGTAAAAATCTAGGTTCATCATATATTTGCTGGGTAAAATATATTTCAAAGATATACACTCTCAACAAATAAGGAAAACGTAGAAATTAACCACATAACAAAAATGAATCAAATTTAATGTTGCAGAGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGGGTATGAGTTCTATTTCCTGTTCAAGCTTGCAAAACTTCATCTTTGTTATTAAGAGTTATGCATGTGACTTATGAACTGGAAGTCTGGAATAACAAATAGATTGTTTTTCTTGTAAATTCCTAAAACACATTAAATGTTTAACTTCACATAATAACATTTCTATTTATAAATGTAAGTATTAGTTTCAGTGTCAGACATTTATTTGCAATACATCAAGTTGGATGCTGATGGAAAAACTTTATTTATCAATATGAAGATTTGAGCTGTTTAACTCAAAGTTCTAAAGTATACCAATGCAGTTTTCACTTTTTAACCATGTATTTGATGATTTGGGGCAAACCCTGTCCAAGTCAACCTGCAATTTTCTTGTTGCAACTTTGGCTAAGAGTAAGGAGTAGTCTCATGAATTCAGACTAATATCTAATCCTTTTGCAGCCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAATGCCGCCGTCAAAGAGT</genome_strand>
        <mrna_strand>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATATTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGAC-TGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAAGGACGCCGTCAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344742" ref_strand="+" ref_description="SGN-U344742        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | NADH:ubiquinone oxidoreductase family protein, contains Pfam profile PF05071: NADH:ubiquinone oxidoreductase 17.2 kD subunit | chr4:13539648-13542403 FORWARD | Aliases: None(evalue: 2e-63, score=239) genbank/nr: gi|30687433|ref|NP_849455.1| NADH:ubiquinone oxidoreductase family [Arabidopsis thaliana] gi|19347747|gb|AAL86298.1| unknown protein [Arabidopsis thaliana] gi|22136740|gb|AAM91689.1| unknown protein [Arabidopsis thaliana](evalue: 1e-61, score=239)">
      <seq>gaaaatactgactgagattttgaagaatgtcgaaattgtgggcgaggttttcaggtttattcagcagcaagaattttgtagggattgataaagtaggcaatcgctattttaaaaatattgaggagcttgatggtgtcatgaaggaaaagagatgggtgacatttaaaggagaggaagatccaacctccattccagttgaatggatatgttggttgaatggacagcggaagaatgctccaactccagaggaaatggctgagttggaggccagaagggaatttgttaagcttaatattgctcgtctcaagaaggaagaggaggaaagaatggccaaagaaggcaagaggaaagccacaaacattggtaaagctgatggtccagatttaaaaagtttcgttcaacaatttccggatgcttcaaaaggtgatacaaaggcagaagcctctgatacacagcatgaaaaaaggtcgtcagagccaactggtaccggtgaatcctttagaccaggaacatggcaacctcctacctgagatcactcagactcaacggggaacctttagttttctcttgatgttctatttcaaggacatcagatgactgcagaagttgaatacaaggaactaacgccacgcaatgtggcagtctcattctttctcctcacggatgtttgccccgaattattgtttctgtccttcctgttacttgtttcagggtcatttcatttttgataggactacaccaactttcggatgattaatcgtcaattgtcaaatctgcactatgctcctttaccctttgatgtactgtaaagttctgctatattgaccattgataagatcttaccagaagaaaataacaacataccctgtgtaatcccataaattgggatctcgggaaagtaagtgtatccatatcgtaaagaggttggtttccataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="97637" stop="92336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97337" g_stop="97200" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97199" i_stop="96420" i_length="780">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96419" g_stop="96363" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="195" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96362" i_stop="96176" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96175" g_stop="96123" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="248" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96122" i_stop="95201" i_length="922">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95200" g_stop="95149" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="300" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95148" i_stop="94764" i_length="385">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94763" g_stop="94701" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="363" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94700" i_stop="94602" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94601" g_stop="94542" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="423" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94541" i_stop="93635" i_length="907">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93634" g_stop="93592" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="466" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93591" i_stop="93114" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93113" g_stop="92655" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="923" r_length="457" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="934" polyA_stop="955"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U344742" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97337" e_stop="97200"/>
          <exon e_start="96419" e_stop="96363"/>
          <exon e_start="96175" e_stop="96123"/>
          <exon e_start="95200" e_stop="95149"/>
          <exon e_start="94763" e_stop="94701"/>
          <exon e_start="94601" e_stop="94542"/>
          <exon e_start="93634" e_stop="93592"/>
          <exon e_start="93113" e_stop="92655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCAGTAAGTGGGTTTTCGTTTCTTTACTTTCAATTAATACTAATTTGATTTTTGTAGTTTAATTTATTGTTTGATCGAACAATGGTGATGATTTTAGTGCATTTTGTTTTATAGCTTTTGTTTTGGCTAATATTGGTAGTTAATTGTTATGATCATTTGGATTTTTGTAACTTGAGAACTTGAAGTGAAAGAAATGAGGTGATTTTGCCAAAAAAAAAGAAAAAAAAACGGACAGTTTGATGCACAAATCATTACAATCAGCAGTGGGCGGTCGTTGAAAATTGGGACTTTGGATGGTGGGGTGCATATTGAATGCCTAGGAGTGTTAAGCTTAACTTTTTGCATGTTGTTTAGGTTATTCAGAATTTATATAGGTATATAAACACAGAAAATCTATCCTATATGTACAATGTAAGTTTTTGCCGAGGGGGTTTGGCTGAATACCCTCGTGTCCCCCTAGATTTGCTCGCTTCAGGCTAGTGGTTCGTATAGGTCACACAAAGATAACTTAACAAAATGAGGTGATCAGGAACATTTGGAAATTGGACAAAAGAATTACTTACCTAGGACTGGTATAACTCTTCCCAGATATTCAGGCGTTCAAGAAGTTCATTTTTATTTGGGGTAGGGGAAGTGAAAATGAGAGAGGGTGAAAGTTCAGGTAGGTCGCCAACCAACTGACCTACTAAGATTTCTCCGTTCAAGAGTTGTATGTAGGACAGCCTTGTTTTTTATTATGTTATCTACTAAAGAACTTTATGTGATAGTTCTATATTTTATTAGTGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAGGTATGTCTTATTAGGAGAAATACTATCCAGCTCTATATCTTGTTTCAAGTCTAAGTAGCATCCCCTTCTCTATCATGTTAATATGTCATGAAGAAAAACAATCGGCTGCTATTATTAACTTTTCAAGTTACACTATTACGTCTTTTATTGCCATTAAGTAGTTACTACTTACAATTGATTGACGTAGTTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAGGTAAAATTTGACCTTTCATGTTACAATTCTATGCTCATAATTCATTGACCATCCTTAACCAGCACTGTCTTTTCTTTGTATGAACTGTTCTTATTCAAGAATAGCACTGTTATCCCTTTATCAGCATGGTTAAAATTATAGAATACGTTTTAATAAACCGAATAGTTTAGCTCTTCTTTTCATATATGGAATGAAAACATGAAAATCATGTTGTTGTATAAATGATATGCAACATCAATGTGATGCTCTGATATTTGAGTATAGGAAAATTAATTGCTTTTGCTGCAATCCATATCTCTTGCACTGTCTGCTACTACAATGAATTCTTAGATATTTAATCACTTGATATTCTCTTTTTATTTTGATTTTGATAGGCAAATAATTCATTAAAAATTGGAGGGGTATGTACCGATATGCATTTAACTAGAGTCTGGTTTTAAAAATAAGCCAGCAAAAGTCCCATAAACCCCTGTTGCTTCTTTTGTCATTAATTTCAGCTCTAGGCTTTCAATTTTCATTGTGGTTGTGTTTTTATTTTAACATCTTATGGTACTTGAAACACTAAGCGGGTTTTCCTTCTCGTCGTTCTTGTTTGTTGTGCCATTCCATTTATGCCTTTTTGGCCATGACCAATTAATTGAACATAGGTCCTCATGTATAAGGTGCAATCTAGTTGAGGTGCTTCTACCATTACATCCGCTGTAAAAAAAAGAGAAGATAATGATTGCAAAGCTTGTCAAATTATTTGCTTTCAACCAAGTGCTGGAACTTATGTGATTAAATTAGGTCACAAATTGTCACTTTTAGCTTATGTTTTTCAGATATGCATCCTTTCAAATGTAAGTATGTACTGAACTGTATTTAATTTAGCTCAAGTTACTTCCCGAACTGTATTTTGATGGTTGTCTATTTTCTCTACCAGGAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTCGTAAGTTTTCCAATTTCATGTCTCTCTTTTGGTCATGGATTTATTATAACCACTCTTGAAAAAACTGCTCTAATGTCTTACTCCTAACATCGAGGATATTTAAGTTTATAATAGATGATAGAAAGAAGCTCATCATTCAACTTTTAGATGGTTGTACTTTCAAAGTAAGTTTAGGTACTTAAACTACAGGATGACCTAGATTTATTTTTCTTTCCTACTTCATAATTTTAGTTGCTTATGATTTATGAGTTTACTTTTGCTGTTAGTCTGGTTTGAGATTTTCCTAACTTACATGCTTACTTGAGACACACTTCGGTGGTCATTTGATTGGCTGTCAGTAGGAAAATAACCTTTCTGAGAATGTATTATCTTTTTGTTGCTTTAGGTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTGGTAAGTTGCTTACTTAAGTTCTACAGACTCTGAAAGGGGAAGCAAATTGCTACTTGAACTGCATGACATTCATTCCTCTTCACCTTGTCCGATCCCCAGGTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAGGTATCACCCTATCCTACAAAAGTACCCATGTCCAAATGTCCATTCTTTAAGGTAGGGCCTGCTTGGTTTTGCAATCAATTTTTTTTTTCGTTTAGAAAACAAAAAAAAATGGTTGCAAAACCATTCTTCCTCTTCCGTTTTTGATGCATAAGATGTTCTCAGGAAACAGCGAATTGTGAAAGAAAGATAGTGGGTTGTGTAAGCTTCCTTTTTTGCAAATTGCACTTCCTCCAATGGTCTTCACTCTGTTAAAACCTTATGAACCTTTAATGTGGTGTGTGTGAGTTTGGTAACTCAGAGTAAATTATGGGGCTAATGAAGAGGAATTTCTTTTGTCGTGTAGCATGTTAGAGGGTGTTTTGCTTTGCCAACAAGATGCGCCTGTGTAATACCACAATGCGGATAGGATAGTACGTTCAAAATATAATATGGAATACTGTAGTGCCTGATTGATTCATTATACTGAATACCTATTTATTCCACATAAATGGTAAATATTATTTATTCTCTATTCATATGATAAACTTGGTGCTTAACTGGGCAACTAAATCCTAACTTGAATGATATAGATGTAAATGTCCATTTGTTTCCCTTTTTGCAAAATCAGTCATGTACAGTAAACAGTGTAATGAGTCTATTGATGCAGCTAATGCCTAATAATTACCATGATTCCAAATACAGTGTTTTTATCAGCAAACCGAATAGTTTTCGCTTGCCCCCCTTTTTTACTTGGAGCTAAGCAGCAGTTGTTGTGAATTTTGATACATTATGGTCTGATGTTAATCCATATAACGATACATCTTTTTGTTCTGCGACAGTTCTCCATTCCCCGTTTTTATTATTCTCTTCAGCTAATGTATGCCAATTGTTTCTGGACTTTGTTTTGATTGCATCTTTGTTTCTGAAGGTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAGGTGAGTCAAAGCAAATATACTTTTTCCAGTGTGGATTGCTTTAAGAGGTTTTCACAATTGTAATCATTAATGACAAAAAAGAAAAAGTAAAGAAGTGAAAAGGAAAGTGGAGGATGAGAAATAATTTTCAGATAATTTTTCTTGCAGCCGATGAATTTGACATTGTTATTGTGTTCTCCCTCTTATAGAACTTGCATATTGTGTAATATAGACATGCCATACCAAAAGTTACTGAAGCAGCAATGTGCTTATCATGTCAGACAACAAACACAAAAAGTTCTATTGTTTGTTCTCTTTGTTGTTTTTATCTACCCTTCTATTGATACACCTAACCAACACTGGACACTTTAGTTCTTTTACGATTTAAATCATTACTAGTGGAAATAAGCTTACATAGAATGAATGATAACAGGATGACTAGATATTAGACGTTCTAATGATCATCAGCAACGACTTAAATGTATCTTGTTTGTTTCAGGTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACAATTGATAAGATCTTAACAGAAGAAAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAGAGTAGAGTGTATCCATATCGTAAAGAG</genome_strand>
        <mrna_strand>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAG...........................................................................................................................................................................................TTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTC.................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTG...................................................................................................GTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACCATTGATAAGATCTTACCAGAAG-AAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAAAGTA-AGTGTATCCATATCGTAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323428" ref_strand="+" ref_description="SGN-U323428        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr3:7157916-7160413 FORWARD | Aliases: K10D20.4(evalue: 0, score=667) genbank/nr: gi|22331208|ref|NP_188686.2| calcineurin-like phosphoesterase family [Arabidopsis thaliana] gi|11994138|dbj|BAB01159.1| purple acid phosphatase-like protein [Arabidopsis thaliana] gi|17064824|gb|AAL32566.1| purple acid phosphatase-like protein [Arabidopsis thaliana] gi|20259848|gb|AAM13271.1| purple acid phosphatase-like protein [Arabidopsis thaliana](evalue: 0, score=667)">
      <seq>caccctttatggagctcaaattgaagatactactactattattactctctttgacatccattccgttcatcagcagaacagtccgagctggagaagaagtagaatatctccgacctccgccgcgtaaggcctttcgtttgccatgggatccacaatcttcctctcaacctcaacaggttcacatctcattagctggagacaaacacataagggtatcatgggtgacaactgataaatcttctccttcaattgttgaatatggaacatccactggaaaatatagttataaagctcaaggagaaagtaccaagtacagttacctgttttatcgttctgggatgatacatcatactgtgataggaccattgcaagacagcacagtgtatttctacagatgtggtggagaagatccggagttccagttcaaaactccaccgtctaagtttcctgttacttttgcagtggcaggagatttaggccaaactggatggacgaagtcaactttagaccatatagaccaatgtaaatatgatgttcatttgctccctggtgacctttcttatgctgattatgttcaacataggtgggacacatttggtcaactggttcagccgctggctagtgcaagaccatggatggtgactcaagggaatcatgaaaaagaaaacataccattcgttgtggatgaatttatatcttacaactccaggtggaagatgccatttgaggagagtggatctacttcgaatctctactattcatttgacgttgctggggttcatacaatcatgcttggttcatatactgattacgatgactactctgatcaatatcgatggctgaaggctgatcttcataaggttgatcgcaataagactccttggttggttgtgttattccatgtgccatggtataacagtaatgaggctcatcaaggtgaagctgatgacatgatggcatctattgagcctctgttatatgcagctggtgcagatatagtatttgctgggcatgttcatgcttatgaacgcacgcaacgagtttataatggtaaacctgatccttgtggtgctgtccacataacaattggtgatggaggaaacaaagaaggtttagcgcgcaagtacaagctaccccaaccagaatggtctgtgttccgcgaagcaagctttggccatggtgaacttgcgataattaattcaactcatgcctcttggagctggcatagaaatgatgatgatgaaccagtgaggtctgatcaagtttcgattacctcgttgattgattcaggatgcagcagcgttagagtcatgaactaagagaaatccttggaagctcttagctctacttgtaacagaaaccaactacttgttcttattattaagtaaatttaggagatatattgagtaatgtctcttgttgctcaaactcaacagtcaaaaacttgaagatgagagctgtaagttgaataccatgccataaaaatgtaactaattgttctgtagaaaacatctataattcagaagctttagcatgaacgtttacatgtaactcaaaaagtagtctatcaactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="104991" stop="101379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104691" g_stop="104516" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104515" i_stop="103462" i_length="1054">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103461" g_stop="102793" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="845" r_length="669" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102701" g_stop="102513" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="1034" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102427" g_stop="102339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1035" r_stop="1123" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102131" g_stop="101679" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1124" r_stop="1576" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U323428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104691" e_stop="104516"/>
          <exon e_start="103461" e_stop="102793"/>
          <exon e_start="102701" e_stop="102513"/>
          <exon e_start="102427" e_stop="102339"/>
          <exon e_start="102131" e_stop="101679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATAATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAGGTAATGAGGATCGAGGCGGATCTAGAATTTTAAGTTTTTTCTCTGATAGCAAATCAAATTAATGTATGAACACTGGAAATATGTGTAACTTATATAGTAGTACTCAATTTTTTATTTTTATTTTGAATATTTAAGTTTTAATGTTAAAATATTGAGTTGATTAAAGTCAAATTTACTCTCGGTAAGTAAAATGTGTCGTATAGATTGAGACAGAGATGTATCGAGAGAGTAGTAGGGAGGTGAGTAAAATGTGTCATGTAAATTGAGACAGAGAGATATTGAGGGAAGAGATTTTTTGAGAATGAGTGCCAACTTACTAGAAGAGATATATTGTAATTTTGGGTCTGGATTATATCTGGATACTGTTGTTTAGCTGAGTTTAGGAGTTTTAATTACTCTTTGTTACAATATGATGTGAAACTAAGGGTGCTTAATATTCTTCTTTTTGATCTGATAAGGTTCGTATATGGGTCAATGTTTTACCATAATTTGGTTATTCCTTAATGATTGAAACTTGAATCAACCGTCTTTAACCTCCTGAAGTTACCAATTTTCATGGTATCTGTGTTTTCATTCTTCATAGGAAGTTGTAGTTTTGATTTTCTACGCATTGCTTTGCATGATATCAATGTGCAATGTAGTTTAATTAGGCGTCAATTAAGCTCAATACACTCCAAAGCTCTGTTCTTTTGTGCTTTCGTTTTCTTATTGTGTATTCAAGCTAGTGTTTGGTCCTGTTTAGGAGGATGTAGAATGTTTTCACGGTCATTATGTTAGTCAAAGGTGGAGCCAGGATTTAATGTTAGTGAAATGCTATTATAACGAAGGTGGGGGAGGGGTTGGCATGAAGGGTGGTGTAAAGAACTACTAATATTTCTTGGATTCATTTCAATTCGACTAACTTCTCTTTCCCTCTTTAGTTTCTTGATTCAGAGCACAAACCGAACTTTTGCAACCTATCAAGCATAAAAAAGGAAACATTTTATGTCATTCCAAATTGGTTTACTGTTGTGGCTTGTATAGTTGATCATGTGGATTGACATGGTCATTTCAGGTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAGGTTAATTAGCTGAGCTCTCGTTTATTACTGAAAAGCTTAGCAACTTTTCGTTCTGCTAATACAAGTGCATTTATTGGAAATTCATTTCTAGGCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACGGTATGCCTAGCTTGCTAATTTACTTGTTTACTTTTGATTATTGCATACTCGTAGATGATGCAATTCATTTCTTCTTTTACAACAGCAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAAGTAAGTATTCCTTGTATTAATTTTTCTCGCCATGCTGAGCACAAGATCCTTAAAATGGCAATGGAAACAAGAACTTGTTTGGTTCTGTTTCTGAGTTGAACAACTTTGACAACAAAAGGAAACTTCTCACAAAGTGCTTATATAAGGTTTTGTAGAGTGGAAGTTATTATGACAATGAACTTACATGTCCTGGCGAATCATTGACAGGTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</genome_strand>
        <mrna_strand>CACCCTTTATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG...........................................................................................GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACG.....................................................................................CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA...............................................................................................................................................................................................................GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313420" ref_strand="+" ref_description="SGN-U313420        Tomato 200607 #1 [91 ESTs aligned] arabidopsis/peptide: AT1G11650.2 | Symbol: None | RNA-binding protein 45 (RBP45), putative, similar to gb:U90212 DNA binding protein ACBF from Nicotiana tabacum and contains 3 PF:00076 RNA recognition motif domains. ESTs gb:T44278, gb:R65195, gb:N65904, gb:H37499, gb:R90487, gb:N95952, gb:T44278, gb:Z20166, gb:N96891, gb:W43137, gb:F15504, gb:F1 | chr1:3914774-3918163 FORWARD | Aliases: None (evalue: 8e-116, score=414) genbank/nr: gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia](evalue: 1e-152, score=543)">
      <seq>gtcaccgttccattttttttctctctctttcatacccctagggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaaaaaacagcccgggggatccaaaaaaaaaaaaaaaaaacatttggtttgcttgtgagcagcatctagtaaatgtgatgcttataattgacgaaacaaagatggtagagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109630" stop="105123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109330" g_stop="108937" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="860" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="916" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="917" r_stop="1047" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1144" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1145" r_stop="1306" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="105767" g_stop="105522" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1307" r_stop="1552" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1661" polyA_stop="1678"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U313420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1552</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109330" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTA</genome_strand>
        <mrna_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326894" ref_strand="+" ref_description="SGN-U326894        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | DEAD/DEAH box helicase, putative | chr5:22315783-22318945 REVERSE | Aliases: MBG8.18, MBG8_18(evalue: 5e-146, score=514) genbank/nr: gi|15240418|ref|NP_200302.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana] gi|9758271|dbj|BAB08770.1| RNA helicase-like protein [Arabidopsis thaliana](evalue: 4e-144, score=514)">
      <seq>tttaattctcgccggccgttcatattttgctcaccggcgggacacttccatcaataagcgattgcaaaaggtatgggaaagcatgcacctaagtcacggaaagttaaaatacagaatcggttatcagaggttcatgaaattgagcttctggaggaatggatagaatcaggtaaaccggaatccggttcaaatccgttgtcgcttgagccattaccacataaagctccggttggacgtcttccggatggttcattctctaggtatgctggttgtgataggttcagtcagttgccggtttctaagaaaactaaagatgggttaactcagtgcaaatacaaaactatgaccgatattcaaagggcttctctgccacactctctttgcggccgtgatattcttggtgcggcgaaaactggttctggaaagactttggcttttgttattccggtgctagagaaattgtataaagctcgatggggaccagaggacggtgttggatgcatcataatgtctcccacaagggagttagcaggtcaactttttgaagtacttaaatctgttgggaaacatcaaggcttcagtgctggccttctgattggtggccgcaaagatgttgatgctgaaaaagaacatgttaatggattgaacatcctggtctgtactcctggtcggcttcttcagcatatggatgagacaccaaattttgattgttcacaacttcaggttttagttcttgatgaagcagatcgtattcttgatgtggggtttaagagggatctaaatgcaatcatttcacaattgcctaagcataggcagaccttattgttttcagcaacccagaccaagtctgtccaagatctggcaaggctcagcctgaaagaccctgaatatttgggtgtacacgaggagtccgatactgcgactcccaaccgcttacaacaaacagcaatgcttgttcctcttgataagaaatttgacatgttgtggagttttataaaggcacatcttaactcaaggatattggttttcctgtcaagctgcaagcaggtaaaatttgtttttgaaactttcaaaaaactccgtcctgggattcccctcaagtgtcttcatggaaggatgaagncagatagaaggatgagaatttattcccaattttgtgaacaacgttctgttctgttctcccactgatgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-n0kDE/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="114736" stop="111746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114436" g_stop="113990" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113588" g_stop="113313" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="723" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113312" i_stop="112810" i_length="503">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112809" g_stop="112486" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="1047" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112485" i_stop="112194" i_length="292">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112193" g_stop="112046" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1048" r_stop="1195" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-U326894" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1195</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114436" e_stop="113990"/>
          <exon e_start="113588" e_stop="113313"/>
          <exon e_start="112809" e_stop="112486"/>
          <exon e_start="112193" e_stop="112046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCGGTACGTCTTGAGTTAATAATCGAAAACACAGCTAAAGTATCCATTTTTCTGAGTTTCATAGCTGAACTATCAGGTTCCCTAGCTGAATTATAAACAACTGTTTGTCAAAACACAACTCATCATCCCACCATCATTGATAGTTGATGCTTGTTATGATAAAAAGCTGGTGATATTTGTTGTGCAGTTATTCAGTTGGGTTATGGTAAGAATGTTGGCTTCACATTCTCTTATGTGTTTGCTGCTTCGATATTCAATTTGTTAATTGAAATGTTGCTTCCATAGTTCCATCGTTTTTTTTTTTTGCGCTTTGGTGCTTGAATCTCTTCGTTATTTACTAGTGTAGTTTCTTGGTTTTTTACCATTTTAATAAATTCAGTCACTTAATTAGATTTCATTTCTAGGTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAGGTCCAGTTAACAACACTTTCTCCTCTCCTTTCCTAAGGCTCTTTTACCATGTCTTGTCCTTGATAAGAGGCAGGGAGTAAATACTGCATCATCAAGAATTAGTTTCTGATTTGCTCCTACTTTATTAATGTTAGTGTAGACTACCTTCCACGAAAACAATGCTATAGTTTGCTCATCACAGCGTACTAATTATGATTGTATAGCATCTAGGGACAGATTGGCTCCCTCCTTTTTTACCTTGGTGGGGTTTGGACCTGCTTCATTTTCCTTTTCTCTGCTATGTTTAGTGGAAGCATAGCTATTGAAAGGTTGTCTGTTGATGCTACTACAGTTTTTGAAATTATTGTCTTTTATTTATTATTTATTCTATTTCAATTGTTTCTTCAAAGAGACATCCTTTCTTTTGTGAAATCACTTGTCTAACTGTCTTCATCCTCTGCTTTAGAATCATGCATGTTAATTTAGTTGTTGACTTGGGTGCATCTTTCCTGGCCAGGGAACAGGTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAGGTATCTGAACTTCTTCTTGGGGTTCGGTGAAATTGAGAATTCACACTTCATATTGAACGTCTTATTGTAAGATGACATGAATATTGCACCTAATCTTAGATTGCTGTTGATTTTAGTACCTAACATCAACAAGCACTAATGACCTTTGCTATATCACCTGTTTTCGAAAAGGAAAATTATCTATCTGCTATATTGAATCGGGTTTCAGAGTATTCAACAGCTAAAACTTTTGCTCTTAATTTTCTGGTGATTTGATTTGTTCTGTCATTTTTTACTGTTCCCAATTCAACAGGTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGCAAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCT-CCACTGATGTTGCTT</genome_strand>
        <mrna_strand>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAG....................................................................................................................................................................................................................................................................................................GTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGNCAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCTCCCACTGATG-TGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7222" PGL_stop="9390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7222" e_stop="7490"/>
            <exon e_start="8556" e_stop="8643"/>
            <exon e_start="9208" e_stop="9390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.743" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7222" e_stop="7490" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.743" acc_prob="0.718">
            <gDNA_intron_boundary i_start="7491" i_stop="8555" i_length="1065"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8556" e_stop="8643" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8644" i_stop="9207" i_length="564"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="9208" e_stop="9390" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7222" stop="7490"/>
              <exon start="8556" stop="8643"/>
              <exon start="9208" stop="9390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340349" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTG : CTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAG : TGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTATTT</gDNA_template>
            <first_frame> L  F  *  S  L  K  S  *  L  K  I  C  *  K  K  *  K  N  Q  I  L  V  K  D  A  *  F  L  L  Y  D  P  L  W  V  N  S  G  D  W  W  C  H  G  I  C  Q  *  R  K  H  S  F  T  C  W  R  C  W  Y  W  I  C  S  D  L  S  G  L  L  E  S  A  S  I  S  Q  T  Q  K  F  I  L  C  L  D  S  *  N  C :   L  C  S  H  V  N  M  G  Y  G  A  A  V  H  A  N  F  K  T  N  A  G  W  C  C  C  W  Y  Q  :  C  T  H  D  W  V  L  P  V  Q  N  C  H  K  R  K  P  F  S  T  *  N  *  V  I  P  Y  Y  L  F  W  G  S  N  F  I  L  Y  V  S  S  *  K  C  I  L  I  L  Y  S  I  L  *  N  S  M  D  Q  L  L  F </first_frame>
            <second_frame>  F  F  D  L  *  N  L  D  *  K  F  A  K  K  N  K  K  I  K  S  W  *  K  M  H  D  F  C  F  T  I  P  Y  G  L  I  L  V  T  G  G  V  M  G  Y  A  S  K  G  S  T  A  S  L  A  G  G  V  G  T  G  F  A  L  I  L  A  G  Y  L  S  L  Q  A  F  H  K  R  K  N  S  Y  F  A  L  I  L  E  T   : A  C  A  A  M  L  T  W  V  M  G  Q  R  Y  M  Q  T  S  K  L  M  P  A  G  A  V  A  G  I  S :   A  L  M  T  G  F  Y  L  Y  K  I  A  T  R  G  N  H  F  P  L  K  T  E  *  Y  H  I  I  Y  F  G  V  P  I  S  Y  C  M  Y  Q  A  K  N  V  F  L  F  Y  T  Q  F  Y  R  I  Q  W  I  N  S  Y   </second_frame>
            <third_frame>   F  L  I  S  E  I  L  T  K  N  L  L  K  K  I  K  K  S  N  L  G  K  R  C  M  I  S  A  L  R  S  L  M  G  *  F  W  *  L  V  V  S  W  D  M  P  V  K  E  A  Q  L  H  L  L  E  V  L  V  L  D  L  L  *  S  *  R  V  T  *  V  C  K  H  F  T  N  A  K  I  H  T  L  P  *  F  L  K  L  :  L  V  Q  P  C  *  H  G  L  W  G  S  G  T  C  K  L  Q  N  *  C  R  L  V  L  L  L  V  S   : V  H  S  *  L  G  F  T  C  T  K  L  P  Q  E  E  T  I  F  H  L  K  L  S  N  T  I  L  F  I  L  G  F  Q  F  H  T  V  C  I  K  L  K  M  Y  S  Y  F  I  L  N  F  I  E  F  N  G  S  T  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7289" stop="7490"/>
                    <exon start="8556" stop="8643"/>
                    <exon start="9208" stop="9280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMHDFCFTIPYGLILVTGGVMGYASKGSTASLAGGVGTGFALILAGYLSLQAFHKRKNSYFALILETACAAMLTWVMGQRYMQTSKLMPAGAVAGISALMTGFYLYKIATRGNHFPLKTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29391" PGL_stop="30418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29391" e_stop="30418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29391" e_stop="30418" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29391" stop="29923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29904" stop="30418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</gDNA_template>
            <first_frame> N  R  K  L  L  R  *  I  F  V  I  S  V  S  S  L  M  N  L  Q  I  Q  M  I  Y  S  Q  C  L  R  T  L  I  L  S  K  V  M  K  G  R  L  S  H  V  L  H  T  V  L  L  A  I  P  P  K  F  A  H  S  V  L  M  T  V  Y  T  T  K  T  T  S  S  D  I  L  L  R  I  I  R  V  I  *  R  K  K  E  V  N  G  K  Q  *  A  I  S  T  S  K  V  L  V  I  L  L  K  E  A  S  V  L  S  T  R  T  A  G  T  A  M  P  Q  W  R  *  V  K  Y  I  Q  G  K  V  D  N  L  R  R  C  H  L  Y  L  G  F  G  N  Q  T  E  T  T  T  K  R  Y  Q  L  M  E  Y  T  G  G  Y  Q  M  E  G  Y  R  M  V  P  P  F  L  Q  I  V  V  L  V  K  A  N  S  V  L  Q  G  A  H  L  T  R  A  I  H  K  *  H  E  G  *  K  G  A  L  S  G  R  V  T  L  T  S  T  V  *  K  Q  N  F  W  K  Q  E  W  R  A  R  R  S  S  Y  V  T  S  *  N  K  R  S  R  R  L  L  L  Q  V  L  I  L  P  E  S  S  V  S  L  S  *  G  I  N  K  N  S  N  S  S  S  P  H  F  M  L  T  E  T  S  L  C  I  N  Q  N  C  Y  I  V  I  S  C  N  V  I  *  K  M  H  Y  W  P  L  F  I  S  F  K  G  M  I  *  W  P  I  I  A  S  F  N  R  S  F  S  M  R  R  K  Q  L  C  I  I  E  F  L  Y  S   </first_frame>
            <second_frame>  T  G  S  C  F  G  E  Y  S  *  Y  Q  *  V  H  L  *  T  S  K  S  R  *  Y  I  L  S  V  *  G  P  *  F  C  R  K  *  *  K  G  G  *  A  M  S  C  I  Q  F  C  *  P  S  L  Q  N  L  H  I  Q  S  *  *  R  C  I  Q  Q  R  Q  L  P  Q  T  F  S  C  V  *  S  E  *  F  R  G  R  R  K  *  M  G  N  S  E  P  S  R  R  A  R  F  *  L  F  C  *  R  K  R  L  F  C  Q  Q  E  L  Q  A  Q  Q  C  L  N  G  D  K  *  S  I  F  R  A  R  S  T  T  *  E  G  V  I  Y  I  *  A  L  E  I  K  R  R  Q  L  Q  K  D  I  S  *  W  N  T  R  E  A  I  K  W  K  A  I  E  W  C  H  P  F  S  R  L  W  F  *  *  R  R  I  Q  S  F  R  E  L  T  *  L  G  Q  S  T  N  N  T  R  D  E  R  V  H  *  V  A  A  *  L  S  Q  A  Q  F  K  S  K  T  S  G  S  K  N  G  E  P  E  G  P  V  T  S  R  L  E  T  K  D  L  E  D  Y  C  Y  K  F  *  F  C  P  N  H  R  S  H  S  A  E  V  S  I  K  T  Q  T  V  V  V  H  I  L  C  L  L  K  L  L  C  V  S  I  R  T  A  I  *  *  F  H  V  M  *  F  R  R  C  I  I  G  H  Y  L  Y  L  L  K  V  *  F  S  G  Q  L  L  H  H  L  T  E  V  S  V  *  G  E  N  N  F  V  *  L  N  S  F  I  P  </second_frame>
            <third_frame>   Q  E  A  A  S  V  N  I  R  D  I  S  E  F  T  Y  E  P  P  N  P  D  D  I  F  S  V  F  E  D  L  N  F  V  E  S  N  E  R  E  V  E  P  C  P  A  Y  S  S  A  S  H  P  S  K  I  C  T  F  S  P  D  D  G  V  Y  N  K  D  N  F  L  R  H  S  L  A  Y  N  Q  S  D  L  E  E  E  G  S  E  W  E  T  V  S  H  L  D  E  Q  G  S  S  Y  S  A  E  G  S  V  C  S  V  N  K  N  C  R  H  S  N  A  S  M  E  I  S  E  V  Y  S  G  Q  G  R  Q  L  K  K  V  S  S  I  S  R  L  W  K  S  N  G  D  N  Y  K  K  I  S  A  D  G  I  H  G  R  L  S  N  G  R  L  S  N  G  A  T  L  S  P  D  C  G  S  S  K  G  E  F  S  P  S  G  S  S  L  D  S  G  N  P  Q  I  T  R  G  M  K  G  C  I  E  W  P  R  N  S  H  K  H  S  L  K  A  K  L  L  E  A  R  M  E  S  Q  K  V  Q  L  R  H  V  L  K  Q  K  I  *  K  T  T  A  T  S  F  D  F  A  R  I  I  G  L  T  Q  L  R  Y  Q  *  K  L  K  Q  *  *  S  T  F  Y  A  Y  *  N  F  F  V  Y  Q  S  E  L  L  Y  S  N  F  M  *  C  N  L  E  D  A  L  L  A  T  I  Y  I  F  *  R  Y  D  L  V  A  N  Y  C  I  I  *  Q  K  F  Q  Y  E  E  K  T  T  L  Y  N  *  I  P  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29393" stop="30127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEAASVNIRDISEFTYEPPNPDDIFSVFEDLNFVESNEREVEPCPAYSSASHPSKICTFSPDDGVYNKDNFLRHSLAYNQSDLEEEGSEWETVSHLDEQGSSYSAEGSVCSVNKNCRHSNASMEISEVYSGQGRQLKKVSSISRLWKSNGDNYKKISADGIHGRLSNGRLSNGATLSPDCGSSKGEFSPSGSSLDSGNPQITRGMKGCIEWPRNSHKHSLKAKLLEARMESQKVQLRHVLKQKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33084" PGL_stop="39920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33084" e_stop="33137"/>
            <exon e_start="33390" e_stop="33461"/>
            <exon e_start="33575" e_stop="33620"/>
            <exon e_start="35402" e_stop="35510"/>
            <exon e_start="36135" e_stop="36226"/>
            <exon e_start="36332" e_stop="36394"/>
            <exon e_start="36996" e_stop="37114"/>
            <exon e_start="37370" e_stop="37445"/>
            <exon e_start="37529" e_stop="38221"/>
            <exon e_start="38790" e_stop="38841"/>
            <exon e_start="38932" e_stop="39003"/>
            <exon e_start="39100" e_stop="39150"/>
            <exon e_start="39231" e_stop="39341"/>
            <exon e_start="39726" e_stop="39920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.981"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.745" e_score="0.961"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33084" e_stop="33137" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33138" i_stop="33389" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33390" e_stop="33461" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33575" e_stop="33620" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.945">
            <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35402" e_stop="35510" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36135" e_stop="36226" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.816">
            <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36332" e_stop="36394" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36996" e_stop="37114" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37115" i_stop="37369" i_length="255"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37370" e_stop="37445" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.965" acc_prob="0.977">
            <gDNA_intron_boundary i_start="37446" i_stop="37528" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="37529" e_stop="38221" e_length="693"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38222" i_stop="38789" i_length="568"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="38790" e_stop="38841" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38842" i_stop="38931" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38932" e_stop="39003" e_length="72"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39004" i_stop="39099" i_length="96"/>
          </intron>
          <exon e_serial="12" e_score="0.961">
            <gDNA_exon_boundary e_start="39100" e_stop="39150" e_length="51"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.745">
            <gDNA_intron_boundary i_start="39151" i_stop="39230" i_length="80"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="39231" e_stop="39341" e_length="111"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39342" i_stop="39725" i_length="384"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="39726" e_stop="39920" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33084" stop="33137"/>
              <exon start="33390" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37114"/>
              <exon start="37370" stop="37445"/>
              <exon start="37529" stop="38221"/>
              <exon start="38790" stop="38841"/>
              <exon start="38932" stop="39003"/>
              <exon start="39100" stop="39150"/>
              <exon start="39231" stop="39341"/>
              <exon start="39726" stop="39920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313029" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTG : GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG : TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG : GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG : GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG : GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT : ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAG : GAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAG : GAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTTGAGCTTTGTATTACTGTAGCTACGATCAGTAAACGTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAATTTCAATTTTTGCATTCAGAGGTAATCCTGCTGCTTGAAAAGTTGAACGTGCTGGTGCAGGATCTGGAAAAT : ATTTAGCATAAATTGCATTGACTTTCTGAAAGTCCCCTAGATCAGCCAACCT : AATTGTTGTTTTAACAGCTGCAGAATAGCTAACACCGCCAGCTTTAAGTATCTCCCCAATATTTTTCAGAGC : CTGTTCTGTTTGATCCTCCACATTGTCTGATATGAGTTCTCCAGTCTACAT : GAATAAGACCTAGAGAACCAGATACATAAATGAAATTATTAGCCTTAATTCCTTGAGAATATGGGCCCACTGCAGCTGGTGCCTTATCTGTACTAATTTCCTCCTTTTTAC : CGGTACTGGCTAAGCAAACGAAAGGAACGCGCGAATTAGCAACTGACACGCGTCCAATTCCGATGGCCATCGGAGTACGGTTGTGCCCGGCGTTTGCAGCCATGGCCGGCATACAAAAGCTTCCCGGTGCGACGGCGAACGCCATTTTAAATAATTTTAAATATACTAATAATTCACTTACTGAATAGTGTAGTA</gDNA_template>
            <first_frame> T  R  L  S  T  F  N  C  C  R  I  K  A  I  P  C  F  L  :  V  E  D  G  R  F  S  S  K  K  S  D  S  I  *  *  Q  L  S  F  *  C  C  W  :  L  C  D  G  P  *  *  K  Q  S  P  *  A  K  T   : G  Y  S  W  N  S  C  Q  *  S  R  K  I  F  *  C  L  S  W  E  V  Q  Q  G  V  L  *  L  D  S  *  P  R  E  M  G  R :   G  H  R  A  F  N  I  G  *  P  L  R  T  R  N  C  S  L  *  Y  P  N  N  A  L  *  S  V  W  T   : G  K  E  L  *  G  K  S  N  A  D  L  *  W  T  S  L  R  C  F  G   : Y  V  P  C  *  R  S  S  G  G  F  *  S  N  N  F  F  C  T  E  R  W  D  C  R  T  C  G  E  A  C  S  *  S  G  *  G  P  T  K  :  E  E  E  L  Y  *  H  S  Q  L  H  V  A  M  W  S  L  P  N  W  G  H  W  P  K   : G  S  C  R  A  C  T  S  N  W  T  C  E  L  P  G  I  Q  M  K  E  T  R  N  K  A  K  H  N  R  L  L  L  C  T  G  E  N  Q  F  H  A  T  V  K  *  I  S  F  L  I  E  R  C  V  I  S  V  N  L  L  M  H  C  C  A  I  E  I  V  S  H  F  R  Q  N  K  V  K  Q  R  Y  L  K  C  V  L  V  E  E  I  Q  L  *  H  V  F  A  F  L  V  D  V  F  E  T  S  T  I  C  Y  S  N  V  S  F  D  F  E  L  C  I  T  V  A  T  I  S  K  R  G  Y  K  L  D  E  F  L  L  W  G  L  K  E  P  F  F  N  R  I  Y  S  C  C  T  L  Q  Q  W  R  L  E  S  A  A  E  Y  Q  E  T  L  N  *  R  L  K  S  P  L  F  N  F  N  F  *  I  *  S  H  S  C  H  G  S  *  R  L  *  S  V  *  H  T  A  M  Q  S  I  S  I  F  A  F  R  G  N  P  A  A  *  K  V  E  R  A  G  A  G  S  G  K   : Y  L  A  *  I  A  L  T  F  *  K  S  P  R  S  A  N  L :   I  V  V  L  T  A  A  E  *  L  T  P  P  A  L  S  I  S  P  I  F  F  R  A :   C  S  V  *  S  S  T  L  S  D  M  S  S  P  V  Y  M :   N  K  T  *  R  T  R  Y  I  N  E  I  I  S  L  N  S  L  R  I  W  A  H  C  S  W  C  L  I  C  T  N  F  L  L  F  T :   G  T  G  *  A  N  E  R  N  A  R  I  S  N  *  H  A  S  N  S  D  G  H  R  S  T  V  V  P  G  V  C  S  H  G  R  H  T  K  A  S  R  C  D  G  E  R  H  F  K  *  F  *  I  Y  *  *  F  T  Y  *  I  V  *   </first_frame>
            <second_frame>  L  V  F  P  L  S  I  V  V  E  L  K  Q  F  P  V  F  W :   L  K  M  E  G  S  V  V  R  R  V  I  P  S  D  N  S  C  L  F  N  A  V  G :   Y  V  M  D  R  D  R  N  K  A  P  E  L  R  Q  :  V  I  A  G  T  V  A  S  D  P  E  K  Y  S  D  A  F  L  G  K  S  N  K  E  Y  C  D  W  I  L  N  P  E  K  W  G   : G  A  I  E  L  S  I  L  A  D  H  Y  G  R  E  I  A  A  Y  D  I  Q  T  T  R  C  D  L  Y  G  Q  :  G  K  N  Y  E  E  R  V  M  L  I  Y  D  G  L  H  Y  D  A  L  A  :  M  S  P  A  E  G  A  P  E  D  F  D  Q  T  I  F  S  V  Q  R  D  G  T  V  G  P  A  E  R  L  A  L  N  L  V  K  D  Q  Q  R :   K  R  S  Y  T  D  T  A  N  F  T  L  R  C  G  V  C  Q  I  G  V  I  G  Q  K  :  E  A  V  E  H  A  Q  A  T  G  H  V  N  F  Q  E  Y  K  *  K  K  Q  E  T  K  Q  N  I  I  V  Y  F  F  V  P  V  K  T  N  F  M  Q  L  S  S  R  F  H  F  *  S  K  G  V  *  F  L  L  I  C  *  C  I  V  V  L  *  K  L  C  P  I  L  D  R  T  K  *  N  R  D  T  *  S  V  Y  *  W  K  K  Y  N  F  D  M  Y  S  H  F  L  L  M  Y  L  R  Q  V  L  Y  A  I  L  M  C  H  L  T  L  S  F  V  L  L  *  L  R  S  V  N  V  V  I  N  S  M  N  S  Y  Y  G  D  *  K  S  P  F  L  T  E  F  I  H  A  A  L  C  N  N  G  D  *  N  L  Q  Q  S  I  K  R  L  *  I  K  D  L  N  L  L  Y  L  T  L  I  F  E  S  K  V  I  A  A  M  E  V  E  D  F  N  L  F  N  T  L  L  C  N  Q  F  Q  F  L  H  S  E  V  I  L  L  L  E  K  L  N  V  L  V  Q  D  L  E  N  :  I  *  H  K  L  H  *  L  S  E  S  P  L  D  Q  P  T   : *  L  L  F  *  Q  L  Q  N  S  *  H  R  Q  L  *  V  S  P  Q  Y  F  S  E   : P  V  L  F  D  P  P  H  C  L  I  *  V  L  Q  S  T   : *  I  R  P  R  E  P  D  T  *  M  K  L  L  A  L  I  P  *  E  Y  G  P  T  A  A  G  A  L  S  V  L  I  S  S  F  L   : P  V  L  A  K  Q  T  K  G  T  R  E  L  A  T  D  T  R  P  I  P  M  A  I  G  V  R  L  C  P  A  F  A  A  M  A  G  I  Q  K  L  P  G  A  T  A  N  A  I  L  N  N  F  K  Y  T  N  N  S  L  T  E  *  C  S  </second_frame>
            <third_frame>   S  S  F  H  F  Q  L  L  S  N  *  S  N  S  L  F  S   : G  *  R  W  K  V  Q  *  *  E  E  *  F  H  L  I  T  V  V  F  L  M  L  L   : V  M  *  W  T  V  I  E  T  K  P  L  S  *  D  R :   L  *  L  E  Q  L  P  V  I  Q  K  N  I  L  M  P  F  L  G  S  P  T  R  S  I  V  I  G  F  L  T  Q  R  N  G  E  :  G  P  *  S  F  Q  Y  W  L  T  T  T  D  E  K  L  Q  P  M  I  S  K  Q  R  A  V  I  C  M  D  R :   E  R  T  M  R  K  E  *  C  *  F  M  M  D  F  I  T  M  L  W  L :   C  P  L  L  K  E  L  R  R  I  L  I  K  Q  F  F  L  Y  R  E  M  G  L  *  D  L  R  R  G  L  L  L  I  W  L  R  T  N  K   : G  R  G  A  I  L  T  Q  P  T  S  R  C  D  V  E  F  A  K  L  G  S  L  A  K  R :   K  L  *  S  M  H  K  Q  L  D  M  *  T  S  R  N  T  N  E  R  N  K  K  Q  S  K  T  *  S  F  T  S  L  Y  R  *  K  P  I  S  C  N  C  Q  V  D  F  I  S  N  R  K  V  C  D  F  C  *  F  V  D  A  L  L  C  Y  R  N  C  V  P  F  *  T  E  Q  S  E  T  E  I  L  K  V  C  I  S  G  R  N  T  T  L  T  C  I  R  I  S  C  *  C  I  *  D  K  Y  Y  M  L  F  *  C  V  I  *  L  *  A  L  Y  Y  C  S  Y  D  Q  *  T  W  L  *  T  R  *  I  L  I  M  G  T  E  R  A  L  F  *  Q  N  L  F  M  L  H  S  A  T  M  E  I  R  I  C  S  R  V  S  R  D  S  E  L  K  T  *  I  S  F  I  *  L  *  F  L  N  L  K  S  *  L  P  W  K  L  K  T  L  I  C  L  T  H  C  Y  A  I  N  F  N  F  C  I  Q  R  *  S  C  C  L  K  S  *  T  C  W  C  R  I  W  K  I :   F  S  I  N  C  I  D  F  L  K  V  P  *  I  S  Q  P  :  N  C  C  F  N  S  C  R  I  A  N  T  A  S  F  K  Y  L  P  N  I  F  Q  S  :  L  F  C  L  I  L  H  I  V  *  Y  E  F  S  S  L  H  :  E  *  D  L  E  N  Q  I  H  K  *  N  Y  *  P  *  F  L  E  N  M  G  P  L  Q  L  V  P  Y  L  Y  *  F  P  P  F  Y  :  R  Y  W  L  S  K  R  K  E  R  A  N  *  Q  L  T  R  V  Q  F  R  W  P  S  E  Y  G  C  A  R  R  L  Q  P  W  P  A  Y  K  S  F  P  V  R  R  R  T  P  F  *  I  I  L  N  I  L  I  I  H  L  L  N  S  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33085" stop="33137"/>
                    <exon start="33390" stop="33461"/>
                    <exon start="33575" stop="33620"/>
                    <exon start="35402" stop="35510"/>
                    <exon start="36135" stop="36226"/>
                    <exon start="36332" stop="36394"/>
                    <exon start="36996" stop="37114"/>
                    <exon start="37370" stop="37445"/>
                    <exon start="37529" stop="37585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFPLSIVVELKQFPVFWLKMEGSVVRRVIPSDNSCLFNAVGYVMDRDRNKAPELRQVIAGTVASDPEKYSDAFLGKSNKEYCDWILNPEKWGGAIELSILADHYGREIAAYDIQTTRCDLYGQGKNYEERVMLIYDGLHYDALAMSPAEGAPEDFDQTIFSVQRDGTVGPAERLALNLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39287" stop="39341"/>
                    <exon start="39726" stop="39913"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYGPTAAGALSVLISSFLPVLAKQTKGTRELATDTRPIPMAIGVRLCPAFAAMAGIQKLPGATANAILNNFKYTNNSLTE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37810" stop="38046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVFAFLVDVFETSTICYSNVSFDFELCITVATISKRGYKLDEFLLWGLKEPFFNRIYSCCTLQQWRLESAAEYQETLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="47975" PGL_stop="44034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47975" e_stop="47936"/>
            <exon e_start="47046" e_stop="46801"/>
            <exon e_start="45912" e_stop="45820"/>
            <exon e_start="45550" e_stop="45350"/>
            <exon e_start="44452" e_stop="44034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47975" e_stop="47936" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="47935" i_stop="47047" i_length="889"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47046" e_stop="46801" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45912" e_stop="45820" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45550" e_stop="45350" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.863">
            <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="44452" e_stop="44034" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47975" stop="47936"/>
              <exon start="47046" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45350"/>
              <exon start="44452" stop="44034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAG : GGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG : GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG : AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG : ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCTAGAATGCACAAGGTTGCTGATGACTATATACATATATGTTGCTCTTATCTAATAGTTTGTACAAAGTTTGGTGTTACACATCCTGATCAATGTTGCACAGGACAGA</gDNA_template>
            <first_frame> K  T  M  G  W  R  I  W  K  *  E  *  *   : G  R  R  C  Y  C  Y  I  A  L  G  R  M  V  G  V  *  G  E  K  R  *  F  Q  S  T  Y  C  V  A  A  F  A  P  *  P  P  C  Q  V  *  *  N  C  C  L  G  I  C  K  K  H  G  R  H  A  L  W  L  P  Q  L  N  I  *  L  D  R  H  N  *  W  K  L  P  L  T  L  G  C  *  S   : G  C  F  C  H  D  C  L  E  P  P  S  A  C  I  C  C  E  H  V  E  *  S  L  E  Q  A  T  R  N  *   : E  P  *  S  S  *  Y  S  C  G  S  *  K  A  W  I  L  F  C  Q  I  V  G  Y  S  R  E  G  *  L  G  L  *  *  W  K  V  D  I  M  C  C  F  Y  S  *  D  V  Q  G  S  R  A  I  W  *  I  C  K  L  N  S  G  Y  R  I  H   : D  *  R  C  L  L  S  Q  V  F  R  E  Q  F  K  P  V  A  K  V  V  Q  C  R  *  *  C  E  P  S  F  L  S  N  S  R  R  V  P  D  G  T  T  *  I  Q  *  Y  R  S  V  P  P  Y  E  *  K  M  P  I  Y  A  S  E  I  F  Q  T  T  K  L  L  T  T  A  F  L  S  S  S  *  S  Q  R  L  E  A  Y  S  F  S  L  I  S  S  Q  V  V  Y  L  *  Y  N  I  L  E  C  T  R  L  L  M  T  I  Y  I  Y  V  A  L  I  *  *  F  V  Q  S  L  V  L  H  I  L  I  N  V  A  Q  D  R </first_frame>
            <second_frame>  K  L  W  V  G  E  S  G  N  E  N  D  K  :  G  E  D  V  I  A  I  L  P  W  E  E  W  W  E  F  E  V  K  K  D  D  S  N  P  H  I  A  L  L  P  L  H  P  D  L  R  A  K  F  N  E  T  A  A  W  E  Y  A  K  S  M  A  G  M  P  Y  G  Y  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  S  P  L  D  A  N  L  :  V  A  S  V  M  T  V  W  N  H  L  Q  P  A  Y  A  A  N  M  W  N  E  A  L  N  K  R  L  G  T  K  :  N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  F  S  F  A  K  L  L  A  I  P  E  K  D  D  W  V  Y  S  D  G  K  S  T  S  C  V  A  F  I  L  E  M  Y  K  E  A  G  L  F  G  E  F  A  S  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  S  L  K  F  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D  D  N  V  S  L  P  F  C  Q  I  R  G  E  Y  R  M  E  L  P  E  Y  N  S  I  D  P  Y  P  H  M  N  E  R  C  P  S  M  P  P  K  Y  F  R  P  Q  S  C  *  Q  R  L  S  Y  H  P  R  N  L  R  G  *  K  H  I  V  F  H  S  S  V  L  R  L  Y  T  C  S  T  I  S  *  N  A  Q  G  C  *  *  L  Y  T  Y  M  L  L  L  S  N  S  L  Y  K  V  W  C  Y  T  S  *  S  M  L  H  R  T   </second_frame>
            <third_frame>   N  Y  G  L  A  N  L  E  M  R  M  I  R :   E  K  M  L  L  L  Y  C  L  G  K  N  G  G  S  L  R  *  K  K  M  I  P  I  H  I  L  R  C  C  L  C  T  L  T  S  V  P  S  L  M  K  L  L  L  G  N  M  Q  K  A  W  Q  A  C  L  M  V  T  T  T  *  Y  L  A  G  *  T  Q  L  M  E  I  T  P  H  P  W  M  L  I  W :   L  L  L  S  *  L  F  G  T  T  F  S  L  H  M  L  R  T  C  G  M  K  P  *  T  S  D  S  E  L  R :   T  L  V  F  L  I  F  L  W  K  L  K  S  V  D  S  L  L  P  N  C  W  L  F  Q  R  R  M  I  G  F  I  V  M  E  S  R  H  H  V  L  L  L  F  L  R  C  T  R  K  Q  G  Y  L  V  N  L  Q  A  Q  F  R  L  Q  N  S  R :   L  K  M  L  T  L  S  S  F  S  R  T  I  Q  A  G  C  Q  S  G  A  M  Q  M  I  M  *  A  F  L  S  V  K  F  E  E  S  T  G  W  N  Y  L  N  T  I  V  *  I  R  T  P  I  *  M  K  D  A  H  L  C  L  R  N  I  S  D  H  K  V  V  D  N  G  F  P  I  I  L  V  I  S  E  V  R  S  I  *  F  F  T  H  Q  F  S  G  C  I  L  V  V  Q  Y  P  R  M  H  K  V  A  D  D  Y  I  H  I  C  C  S  Y  L  I  V  C  T  K  F  G  V  T  H  P  D  Q  C  C  T  G  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47974" stop="47936"/>
                    <exon start="47046" stop="46801"/>
                    <exon start="45912" stop="45820"/>
                    <exon start="45550" stop="45350"/>
                    <exon start="44452" stop="44237"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLWVGESGNENDKGEDVIAILPWEEWWEFEVKKDDSNPHIALLPLHPDLRAKFNETAAWEYAKSMAGMPYGYHNLIFSWIDTIDGNYPSPLDANLVASVMTVWNHLQPAYAANMWNEALNKRLGTKNLSLPDILVEVEKRGFSFAKLLAIPEKDDWVYSDGKSTSCVAFILEMYKEAGLFGEFASSIQVTEFTIKDAYSLKFFENNSSRLPKWCNADDNVSLPFCQIRGEYRMELPEYNSIDPYPHMNERCPSMPPKYFRPQSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58661" PGL_stop="56904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58661" e_stop="58522"/>
            <exon e_start="57681" e_stop="57589"/>
            <exon e_start="57392" e_stop="57192"/>
            <exon e_start="56977" e_stop="56904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.861" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58661" e_stop="58522" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58521" i_stop="57682" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57681" e_stop="57589" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.945">
            <gDNA_intron_boundary i_start="57588" i_stop="57393" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57392" e_stop="57192" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.872" acc_prob="0.861">
            <gDNA_intron_boundary i_start="57191" i_stop="56978" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56977" e_stop="56904" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58661" stop="58522"/>
              <exon start="57681" stop="57589"/>
              <exon start="57392" stop="57192"/>
              <exon start="56977" stop="56904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTG : GTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAG : AACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACG : ATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGA</gDNA_template>
            <first_frame> S  E  P  S  L  T  R  L  L  L  G  N  M  H  E  A  W  K  E  N  L  M  V  T  T  T  *  Y  L  A  G  *  T  Q  L  M  E  I  T  H  H  P  W  M  L  I  W :   W  L  L  S  *  L  F  G  T  K  *  R  L  N  M  V  L  T  C  G  T  K  P  *  T  N  D  L  E  L  R :   T  L  V  F  L  I  Y  L  L  K  L  K  S  V  D  P  L  S  P  N  C  W  L  F  Q  S  K  M  T  G  F  I  A  T  A  S  Q  H  H  V  L  L  L  F  L  K  C  T  R  K  E  D  Y  L  V  N  L  Q  T  R  F  R  L  Q  S  S  R :   *  K  T  L  I  L  S  T  F  S  K  T  I  Q  A  G  C  L  N  G  A  M  P  M  </first_frame>
            <second_frame>  P  S  Q  V  *  R  D  C  C  L  G  I  C  T  K  H  G  R  K  I  L  W  L  P  Q  P  N  I  *  L  D  R  H  N  *  W  K  L  P  T  T  R  G  C  S  S   : G  G  F  C  H  D  C  L  E  P  N  S  A  *  I  W  F  *  L  V  E  R  S  L  K  Q  T  T  W  N  S   : E  P  *  S  S  *  Y  T  C  *  S  *  K  A  W  I  L  F  R  Q  I  V  G  Y  S  R  A  R  *  L  G  L  *  R  R  Q  V  S  I  M  C  C  F  Y  S  *  N  V  Q  G  R  R  T  I  W  *  T  C  K  L  D  S  G  Y  R  V  H   : D  K  R  R  L  Y  S  Q  P  F  R  K  Q  F  K  P  V  A  *  M  V  Q  C  R  * </second_frame>
            <third_frame>   R  A  K  F  N  E  T  A  A  W  E  Y  A  R  S  M  E  G  K  S  Y  G  Y  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  P  P  V  D  A  H  L  :  V  A  S  V  M  T  V  W  N  Q  I  A  P  E  Y  G  S  N  L  W  N  E  A  L  N  K  R  L  G  T  Q  :  N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  S  S  F  A  K  L  L  A  I  P  E  Q  D  D  W  V  Y  S  D  G  K  S  A  S  C  V  A  F  I  L  E  M  Y  K  E  G  G  L  F  G  E  L  A  N  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  T  L  N  L  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58659" stop="58522"/>
                    <exon start="57681" stop="57589"/>
                    <exon start="57392" stop="57192"/>
                    <exon start="56977" stop="56906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKFNETAAWEYARSMEGKSYGYHNLIFSWIDTIDGNYPPPVDAHLVASVMTVWNQIAPEYGSNLWNEALNKRLGTQNLSLPDILVEVEKRGSSFAKLLAIPEQDDWVYSDGKSASCVAFILEMYKEGGLFGELANSIQVTEFTIKDAYTLNLFENNSSRLPKWCNAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63546" PGL_stop="64757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63546" e_stop="64757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63546" e_stop="64757" e_length="1212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63546" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64049" stop="64757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336433" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACACCACGAATAAGCATCCTCCACTTTCAACTATAAGAATATAAGTTCGAGTTACATAAAAAAAGGAA</gDNA_template>
            <first_frame> I  F  L  G  I  L  I  A  N  P  T  *  K  F  L  Q  Y  V  F  H  S  T  S  K  P  C  H  *  I  L  T  T  S  P  R  *  N  W  N  D  T  E  K  I  Q  Y  K  S  S  *  E  H  L  P  P  C  S  P  T  F  T  S  L  L  Y  L  F  L  H  L  L  F  L  V  Q  H  C  H  N  H  H  Q  T  T  T  R  L  R  T  T  N  L  R  P  T  H  S  H  H  K  K  Q  D  E  *  Y  E  K  C  I  K  *  P  E  F  K  I  H  L  G  S  S  S  L  D  G  K  W  V  H  H  R  A  N  S  F  S  T  V  C  S  R  G  T  R  L  T  Y  V  G  R  A  P  Y  S  K  L  H  R  L  H  R  S  G  F  S  F  R  N  L  P  L  G  N  *  Q  L  R  Q  R  *  I  P  C  F  R  S  P  N  *  C  I  S  R  S  P  *  M  A  M  D  N  H  P  T  R  I  L  *  Q  S  P  F  L  S  T  S  S  D  I  H  S  P  S  N  Q  Y  L  L  Q  R  S  N  Y  S  G  V  R  R  G  L  F  R  V  H  Y  V  Q  P  T  V  S  F  L  G  S  W  Y  E  K  *  V  T  F  N  R  V  S  I  T  R  R  R  N  T  R  I  E  G  T  T  R  *  S  S  S  R  S  V  *  Q  Q  L  L  H  C  *  W  N  L  E  L  D  F  G  R  L  E  V  F  *  A  D  G  D  D  F  L  L  *  I  R  S  S  A  K  I  M  E  *  T  K  F  R  M  D  *  R  S  *  N  T  I  N  F  C  F  T  L  N  S  I  Y  S  I  *  N  S  *  Y  T  M  L  I  G  L  S  Y  I  L  F  F  P  I  S  I  E  M  I  L  I  Y  T  T  N  K  H  P  P  L  S  T  I  R  I  *  V  R  V  T  *  K  K  E </first_frame>
            <second_frame>  F  F  L  A  F  *  L  Q  I  Q  P  K  S  S  F  N  M  S  S  I  L  P  Q  N  H  A  I  R  S  S  Q  R  A  L  D  K  I  G  T  I  Q  K  R  S  S  T  N  R  A  K  S  T  F  R  H  V  L  L  P  S  R  V  Y  C  I  S  S  S  T  S  S  S  S  S  N  I  A  T  I  T  T  K  P  P  P  V  S  E  P  L  T  Y  D  P  L  T  P  I  T  K  N  K  M  S  N  T  K  S  V  L  N  D  P  S  L  K  S  T  W  A  H  R  A  W  M  A  S  G  C  T  T  V  L  I  P  L  A  R  S  A  A  G  A  L  D  S  H  T  W  A  G  P  L  I  A  S  C  I  G  Y  I  V  A  D  L  A  S  G  I  Y  H  W  G  I  D  N  Y  G  N  A  E  S  P  V  F  G  A  Q  I  D  A  F  Q  G  H  H  K  W  P  W  T  I  T  R  R  E  F  S  N  N  L  H  S  L  A  R  A  V  T  F  T  V  L  P  I  N  I  F  C  N  D  P  T  T  L  A  F  V  G  V  C  S  G  C  I  M  F  S  Q  Q  F  H  S  W  A  H  G  T  K  S  K  L  P  S  I  V  L  A  L  Q  D  A  G  I  L  V  S  R  E  Q  H  A  D  H  H  R  V  P  Y  N  N  N  Y  C  I  V  S  G  I  W  N  S  I  L  D  D  S  K  F  F  E  L  M  E  M  I  F  F  F  K  F  G  V  R  P  R  S  W  S  E  P  N  S  E  W  I  E  E  A  E  I  Q  S  I  S  A  S  H  *  I  Q  F  I  V  Y  E  T  V  N  I  Q  C  *  L  A  *  V  I  F  Y  F  F  R  L  V  L  K  *  Y  *  Y  T  P  R  I  S  I  L  H  F  Q  L  *  E  Y  K  F  E  L  H  K  K  R   </second_frame>
            <third_frame>   F  S  W  H  F  D  C  K  S  N  L  K  V  P  S  I  C  L  P  F  Y  L  K  T  M  P  L  D  P  H  N  E  P  S  I  K  L  E  R  Y  R  K  D  P  V  Q  I  E  L  R  A  P  S  A  M  F  S  Y  L  H  E  S  I  V  S  L  P  P  P  P  L  P  R  P  T  L  P  Q  S  P  P  N  H  H  P  S  Q  N  H  *  L  T  T  H  S  L  P  S  Q  K  T  R  *  V  I  R  K  V  Y  *  M  T  R  V  *  N  P  L  G  L  I  E  P  G  W  Q  V  G  A  P  P  C  *  F  L  *  H  G  L  Q  Q  G  H  S  T  H  I  R  G  P  G  P  L  *  Q  A  A  S  A  T  S  *  R  I  *  L  P  E  S  T  I  G  E  L  T  I  T  A  T  L  N  P  L  F  S  E  P  K  L  M  H  F  K  V  T  I  N  G  H  G  Q  S  P  D  A  N  S  L  T  I  S  I  P  *  H  E  Q  *  H  S  Q  S  F  Q  S  I  S  S  A  T  I  Q  L  L  W  R  S  S  G  F  V  Q  G  A  L  C  S  A  N  S  F  I  L  G  L  M  V  R  K  V  S  Y  L  Q  S  C  *  H  Y  K  T  P  E  Y  S  Y  R  G  N  N  T  L  I  I  I  A  F  R  I  T  T  I  T  A  L  L  V  E  F  G  T  R  F  W  T  T  R  S  F  L  S  *  W  R  *  F  S  S  L  N  S  E  F  G  Q  D  H  G  V  N  Q  I  Q  N  G  L  K  K  L  K  Y  N  Q  F  L  L  H  I  E  F  N  L  *  Y  M  K  Q  L  I  Y  N  V  D  W  L  K  L  Y  F  I  F  S  D  *  Y  *  N  D  I  D  I  H  H  E  *  A  S  S  T  F  N  Y  K  N  I  S  S  S  Y  I  K  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63565" stop="64593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQIQPKSSFNMSSILPQNHAIRSSQRALDKIGTIQKRSSTNRAKSTFRHVLLPSRVYCISSSTSSSSSNIATITTKPPPVSEPLTYDPLTPITKNKMSNTKSVLNDPSLKSTWAHRAWMASGCTTVLIPLARSAAGALDSHTWAGPLIASCIGYIVADLASGIYHWGIDNYGNAESPVFGAQIDAFQGHHKWPWTITRREFSNNLHSLARAVTFTVLPINIFCNDPTTLAFVGVCSGCIMFSQQFHSWAHGTKSKLPSIVLALQDAGILVSREQHADHHRVPYNNNYCIVSGIWNSILDDSKFFELMEMIFFFKFGVRPRSWSEPNSEWIEEAEIQSISASH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="73662" PGL_stop="78332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73662" e_stop="74640"/>
            <exon e_start="75607" e_stop="75750"/>
            <exon e_start="75858" e_stop="76010"/>
            <exon e_start="76622" e_stop="76737"/>
            <exon e_start="77211" e_stop="77378"/>
            <exon e_start="77480" e_stop="77607"/>
            <exon e_start="77708" e_stop="77807"/>
            <exon e_start="77885" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73662" e_stop="74640" e_length="979"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75607" e_stop="75750" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75858" e_stop="76010" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76622" e_stop="76737" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.895">
            <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77211" e_stop="77378" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77480" e_stop="77607" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.624" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77807" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="77885" e_stop="78332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73662" stop="74640"/>
              <exon start="75607" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335451" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG : GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG : AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG : AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG : GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT : GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG : GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT : GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</gDNA_template>
            <first_frame> F  L  F  F  S  Q  F  L  C  P  I  F  H  F  *  L  *  K  W  L  V  V  D  F  F  *  *  F  F  C  F  F  F  V  S  T  P  *  Y  F  L  E  I  *  R  K  K  K  K  I  N  L  F  A  F  W  C  S  K  N  L  I  L  L  D  T  H  L  C  S  W  F  D  S  *  F  L  H  P  F  *  F  N  Q  V  *  F  K  L  Y  Q  L  Y  F  A  R  S  A  L  M  G  I  C  A  S  K  G  K  P  N  N  A  N  N  G  H  H  G  S  G  S  G  G  V  P  I  H  R  N  E  I  Q  Y  T  K  S  P  G  P  E  A  Q  L  H  V  R  P  P  P  S  P  K  P  A  V  R  Y  D  T  I  L  G  K  P  Y  E  D  V  K  L  H  Y  T  L  G  K  E  L  G  R  G  Q  F  G  V  T  Y  L  C  T  E  I  A  T  G  Q  Q  Y  A  C  K  S  I  S  K  K  K  L  V  T  K  A  D  K  D  D  M  R  R  E  I  K  I  M  Q  H  L  S  G  Q  P  N  I  V  E  F  K  G  A  Y  E  D  K  G  S  V  Y  L  V  M  E  L  C  G  G  G  E  L  F  D  R  I  I  A  K  G  H  Y  S  E  R  A  A  A  T  M  C  R  A  I  V  N  V  V  H  V  C  N  F  M  G  V  L  H  R  D  L  K  P  E  N  F  L  L  S  D  K  S  E  N  A  A  L  K  I  T  D  F  G  L  S  V  F  I  Q  E   : G  K  S  Y  K  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  R  R  C  Y  G  K  E  I  D  I  W  S  A  G  V  M  L  Y  I  L  L  S  G  V  P  P  F  W  A   : E  T  E  K  G  I  F  D  A  I  L  K  G  T  I  D  F  E  S  K  P  W  P  S  V  S  S  S  A  K  D  L  V  Q  K  M  L  T  K  D  P  K  K  R  I  T  A  A  Q  V  L   : E  H  P  W  L  K  E  G  G  V  A  S  D  K  P  L  E  G  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  K  L  A  L  K  :  V  I  A  E  N  L  S  A  E  E  I  H  G  L  K  A  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  K  S  G  L  A  K  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  T  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  T  A  F  Q  Y  F  D  K  D  S  S  G :   F  I  T  R  D  E  L  E  A  A  M  E  E  H  G  I  G  D  P  S  C  I  R  E  I  I  S  E  V  D  T  D  N  :  D  G  R  I  N  Y  E  E  F  C  T  M  M  R  S  G  A  K  Q  P  G  K  V  F  *  F  H  E  Y  P  C  G  Q  V  V  E  E  L  F  L  K  M  C  R  M  S  S  V  V  A  S  I  S  D  V  *  T  F  S  S  K  N  H  V  H  F  G  S  P  Q  F  K  T  V  F  Y  E  C  F  C  L  F  S  A  R  F  F  L  P  C  V  N  C  I  S  L  G  L  E  K  A  L  N  *  A  T  P  S  K  *  Y  I  S  I  V  E  D  F  T  T  F  D  V  *  *  V  V  S  F  I  H  *  G  S  F  *  *  R  Y  *  I  S  F  I  F  P  N  E  L  </first_frame>
            <second_frame>  F  Y  F  L  V  N  F  F  V  P  F  S  I  F  S  C  K  N  G  W  L  L  I  F  S  D  N  F  S  V  F  F  L  C  Q  L  L  S  I  F  L  K  F  E  E  K  R  K  K  S  I  F  L  H  F  G  V  V  K  I  *  S  C  W  I  P  I  Y  V  L  G  L  I  L  D  F  C  T  L  F  S  L  I  K  F  S  L  S  C  I  S  Y  I  L  L  D  L  L  *  W  V  F  V  L  V  K  V  N  L  I  M  L  I  M  G  T  M  D  Q  D  Q  E  E  F  Q  F  I  E  M  R  F  S  I  P  N  L  Q  G  L  K  L  N  Y  M  *  D  L  H  Q  A  Q  N  Q  L  *  G  M  I  L  F  L  V  S  H  M  K  M  L  S  C  T  I  L  L  V  K  N  W  V  G  V  N  L  V  L  H  I  F  V  L  K  L  Q  L  V  N  N  M  L  V  N  R  Y  R  K  R  S  L  L  L  R  L  I  R  M  I  *  G  G  R  L  R  L  C  S  I  *  V  D  N  L  I  L  L  N  L  K  V  L  M  R  I  K  V  Q  C  I  L  *  W  S  C  V  E  G  E  S  Y  S  I  G  L  *  Q  R  G  I  T  V  K  E  L  L  Q  Q  C  V  G  L  L  S  M  L  C  T  F  A  I  L  W  A  C  C  I  V  I  S  S  L  K  T  F  C  C  L  I  R  V  K  M  L  L  *  R  L  L  I  L  G  C  R  Y  S  F  K  K  :  V  S  R  T  K  I  *  L  G  V  L  T  M  L  P  L  R  F  *  G  G  V  M  A  R  K  *  T  F  G  V  Q  V  L  C  F  I  Y  Y  S  V  V  C  L  H  F  G  Q  :  K  P  R  R  V  Y  L  M  P  Y  L  K  G  P  L  T  L  K  A  S  L  G  H  L  Y  Q  V  V  P  R  T  L  Y  R  R  C  *  L  K  I  Q  R  N  G  L  Q  L  H  R  F  L  :  S  I  L  G  *  R  K  V  V  L  H  Q  T  N  H  *  R  V  L  S  Y  Q  E  *  S  N  S  E  L  *  T  N  S  R  N  S  L  *  R :   S  L  P  R  I  S  L  R  K  K  F  T  G  S  K  Q  C  S  T  I  L  T  L  I  I  V  A  L  *  L  M  K  N  *  R  V  D  W  L  N  L  G  Q  S  S  P  R  L  K  S  S  N  *  W  K  L :   L  M  *  M  E  M  A  Q  S  T  T  L  N  S  S  P  P  P  C  I  S  T  G  *  K  E  T  K  I  Y  I  L  H  F  S  I  S  I  K  I  A  V   : G  S  L  Q  E  M  N  S  R  L  L  W  K  N  M  E  *  V  I  H  P  V  L  G  K  S  Y  L  K  W  T  Q  T  M :   M  E  E  S  I  M  R  N  S  V  Q  *  *  E  V  E  P  N  N  Q  A  R  S  S  S  S  T  S  I  L  A  G  K  L  *  K  S  C  S  *  K  C  A  G  *  A  L  S  L  L  P  L  V  M  F  K  R  F  P  V  K  T  M  Y  I  S  D  L  L  S  S  K  Q  S  F  M  S  V  S  V  C  F  L  H  D  F  S  S  L  V  *  T  A  S  V  W  D  *  K  R  L  *  I  R  P  L  L  A  N  D  I  F  Q  S  S  K  I  S  P  H  L  M  F  N  E  L  C  H  S  F  I  E  V  H  F  S  E  D  I  K  S  A  S  F  F  L  M  N  * </second_frame>
            <third_frame>   F  I  F  *  S  I  S  L  S  H  F  P  F  L  A  V  K  M  V  G  C  *  F  F  L  I  I  F  L  F  F  F  C  V  N  S  L  V  F  S  *  N  L  K  K  K  E  K  N  Q  S  F  C  I  L  V  *  *  K  S  N  L  A  G  Y  P  S  M  F  L  V  *  F  L  I  F  A  P  F  L  V  *  S  S  L  V  *  V  V  S  A  I  F  C  *  I  C  F  N  G  Y  L  C  *  *  R  *  T  *  *  C  *  *  W  A  P  W  I  R  I  R  R  S  S  N  S  *  K  *  D  S  V  Y  Q  I  S  R  A  *  S  S  I  T  C  E  T  S  T  K  P  K  T  S  C  E  V  *  Y  Y  S  W  *  A  I  *  R  C  *  V  A  L  Y  S  W  *  R  I  G  *  G  S  I  W  C  Y  I  S  L  Y  *  N  C  N  W  S  T  I  C  L  *  I  D  I  E  K  E  A  C  Y  *  G  *  *  G  *  Y  E  E  G  D  *  D  Y  A  A  F  E  W  T  T  *  Y  C  *  I  *  R  C  L  *  G  *  R  F  S  V  S  C  D  G  V  V  W  R  G  R  A  I  R  *  D  Y  S  K  G  A  L  Q  *  K  S  C  C  N  N  V  *  G  Y  C  Q  C  C  A  R  L  Q  F  Y  G  R  V  A  S  *  S  Q  A  *  K  L  F  V  V  *  *  E  *  K  C  C  S  K  D  Y  *  F  W  A  V  G  I  H  S  R  R :   *  V  V  Q  R  Y  S  W  E  C  L  L  C  C  P  *  G  S  K  E  V  L  W  Q  G  N  R  H  L  E  C  R  C  Y  A  L  Y  T  T  Q  W  C  A  S  I  L  G  R :   N  R  E  G  Y  I  *  C  H  T  *  R  D  H  *  L  *  K  Q  A  L  A  I  C  I  K  *  C  Q  G  P  C  T  E  D  A  D  *  R  S  K  E  T  D  Y  S  C  T  G  S  * :   A  S  L  A  E  G  R  W  C  C  I  R  Q  T  I  R  G  C  C  P  I  K  N  E  A  I  Q  S  Y  E  Q  T  Q  E  T  R  F  E   : G  H  C  R  E  S  L  C  G  R  N  S  R  A  Q  S  N  V  P  Q  Y  *  H  *  *  *  W  H  Y  N  L  *  R  T  E  E  W  I  G  *  T  W  V  K  A  H  R  G  *  S  Q  A  I  D  G  S   : C  *  C  R  W  K  W  L  N  R  L  H  *  I  H  H  R  H  H  A  *  A  Q  A  R  K  R  R  K  S  I  Y  C  I  S  V  F  R  *  R  *  Q  W  :  V  H  Y  K  R  *  T  R  G  C  Y  G  R  T  W  N  R  *  S  I  L  Y  *  G  N  H  I  *  S  G  H  R  Q   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  E  K  W  S  Q  T  T  R  Q  G  L  L  V  P  R  V  S  L  R  A  S  C  R  R  A  V  L  E  N  V  Q  D  E  L  C  R  C  F  H  *  *  C  L  N  V  F  Q  *  K  P  C  T  F  R  I  S  S  V  Q  N  S  L  L  *  V  F  L  F  V  F  C  T  I  F  P  P  L  C  K  L  H  Q  F  G  T  R  K  G  F  E  L  G  H  S  *  Q  M  I  Y  F  N  R  R  R  F  H  H  I  *  C  L  M  S  C  V  I  H  S  L  R  F  I  L  V  K  I  L  N  Q  L  H  F  S  *  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73920" stop="74640"/>
                    <exon start="75607" stop="75750"/>
                    <exon start="75858" stop="76010"/>
                    <exon start="76622" stop="76737"/>
                    <exon start="77211" stop="77378"/>
                    <exon start="77480" stop="77607"/>
                    <exon start="77708" stop="77807"/>
                    <exon start="77885" stop="77959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLYQLYFARSALMGICASKGKPNNANNGHHGSGSGGVPIHRNEIQYTKSPGPEAQLHVRPPPSPKPAVRYDTILGKPYEDVKLHYTLGKELGRGQFGVTYLCTEIATGQQYACKSISKKKLVTKADKDDMRREIKIMQHLSGQPNIVEFKGAYEDKGSVYLVMELCGGGELFDRIIAKGHYSERAAATMCRAIVNVVHVCNFMGVLHRDLKPENFLLSDKSENAALKITDFGLSVFIQEGKSYKDIVGSAYYVAPEVLRRCYGKEIDIWSAGVMLYILLSGVPPFWAETEKGIFDAILKGTIDFESKPWPSVSSSAKDLVQKMLTKDPKKRITAAQVLEHPWLKEGGVASDKPLEGAVLSRMKQFRAMNKLKKLALKVIAENLSAEEIHGLKAMFHNIDTDNSGTITYEELKSGLAKLGSKLTEAEVKQLMEAADVDGNGSIDYTEFITATMHKHRLERDENLYTAFQYFDKDSSGFITRDELEAAMEEHGIGDPSCIREIISEVDTDNDGRINYEEFCTMMRSGAKQPGKVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76105" e_stop="76734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76105" e_stop="76734" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76105" stop="76734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</gDNA_template>
            <first_frame> N  I  *  H  L  H  T  P  S  F  L  V  V  I  S  R  K  Q  F  L  R  H  R  L  S  V  D  Q  I  I  L  L  Y  L  T  Q  G  A  Y  L  L  S  F  A  R  S  L  L  L  S  S  I  T  V  G  F  L  S  W  I  C  Y  Q  V  N  H  S  C  I  F  L  *  K  E  L  D  I  *  W  G  Q  N  Q  V  L  A  A  K  I  S  L  Y  R  D  Q  S  V  S  G  L  *  V  L  T  A  S  F  L  A  L  G  Y  A  K  *  F  *  F  C  A  V  L  Y  S  V  K  E  P  L  L  I  S  Q  M  P  L  Y  I  *  I  A  *  F  Y  V  W  T  G  D  Y  T  C  V  A  S  M  V  C  Y  I  L  F  *  P  Y  C  W  C  V  *  L  T  E  H  P  W  L  K  E  G  G  V  A  S  D  K  P  L  E  G  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  K  L  A  L </first_frame>
            <second_frame>  T  Y  S  T  C  I  L  L  H  F  *  *  L  L  V  E  N  N  F  L  G  I  V  S  Q  S  I  R  L  F  C  F  I  S  P  K  G  P  T  C  F  P  L  Q  D  L  Y  F  Y  L  Q  L  R  L  A  S  *  A  G  F  V  I  K  *  T  T  V  V  S  S  C  E  R  S  *  T  Y  D  G  A  K  T  K  S  L  P  P  K  L  A  Y  I  E  I  N  L  F  L  A  C  K  F  *  Q  R  H  F  *  L  *  D  M  P  N  N  F  S  S  A  Q  S  Y  T  L  L  K  S  L  S  *  F  H  K  C  H  Y  I  S  E  *  H  D  F  M  F  G  L  V  I  I  H  V  L  P  V  W  F  V  I  S  Y  S  N  H  T  V  G  A  C  N  *  Q  S  I  L  G  *  R  K  V  V  L  H  Q  T  N  H  *  R  V  L  S  Y  Q  E  *  S  N  S  E  L  *  T  N  S  R  N  S  L   </second_frame>
            <third_frame>   H  I  A  L  A  Y  S  F  I  S  S  S  Y  *  *  K  T  I  S  *  A  S  S  L  S  R  S  D  Y  S  A  L  S  H  P  R  G  L  P  A  F  L  C  K  I  F  T  F  I  F  N  Y  G  W  L  L  E  L  D  L  L  S  S  K  P  Q  L  Y  L  L  V  K  G  V  R  H  M  M  G  P  K  P  S  P  C  R  Q  N  *  L  I  *  R  S  I  C  F  W  P  V  S  S  N  S  V  I  S  S  F  R  I  C  Q  I  I  L  V  L  R  S  L  I  L  C  *  R  A  S  L  D  F  T  N  A  I  I  Y  L  N  S  M  I  L  C  L  D  W  *  L  Y  M  C  C  Q  Y  G  L  L  Y  L  I  L  T  I  L  L  V  R  V  I  D  R  A  S  L  A  E  G  R  W  C  C  I  R  Q  T  I  R  G  C  C  P  I  K  N  E  A  I  Q  S  Y  E  Q  T  Q  E  T  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76114" stop="76320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLHTPSFLVVISRKQFLRHRLSVDQIILLYLTQGAYLLSFARSLLLSSITVGFLSWICYQVNHSCIFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76167" stop="76373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSLSRSDYSALSHPRGLPAFLCKIFTFIFNYGWLLELDLLSSKPQLYLLVKGVRHMMGPKPSPCRQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="80361" PGL_stop="79892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80361" e_stop="79892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="80361" e_stop="79892" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80361" stop="79892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGG</gDNA_template>
            <first_frame> F  D  *  S  F  *  R  L  V  Y  S  S  I  I  F  S  F  K  *  I  L  V  F  F  V  C  V  V  Y  L  A  S  R  V  M  L  V  F  F  V  F  V  F  W  L  I  R  H  F  *  L  C  G  L  L  G  C  G  L  F  V  A  L  V  N  Q  S  L  D  F  D  T  W  I  I  Y  V  I  V  K  D  G  L  F  Q  L  K  V  S  W  F  F  F  *  L  C  *  I  W  T  L  L  V  C  A  V  L  V  N  *  S  *  D  L  W  I  L  Y  G  *  L  Q  F  Y  L  V  G  N  F  *  Y  V  *  S  *  C  V  L  I  S  D  L  V  V  V  D  I  V  I  L  Y  L  W  A  V  L   </first_frame>
            <second_frame>  L  I  S  L  S  K  G  *  F  I  P  L  L  F  S  V  L  S  K  F  W  F  F  L  C  V  *  F  I  L  L  V  E  S  C  W  C  F  L  F  L  F  F  G  *  L  D  I  F  N  F  V  G  C  W  V  V  V  C  L  W  L  *  S  I  K  V  W  I  L  I  L  G  S  S  M  L  *  L  K  M  V  F  F  S  L  K  L  V  G  F  F  F  N  F  V  K  F  G  L  C  L  Y  V  Q  F  *  S  I  K  V  R  I  F  G  F  S  M  D  D  C  N  F  I  *  L  G  T  F  D  M  F  D  L  D  V  F  S  S  L  I  *  L  W  *  T  *  L  S  C  T  C  G  R  C  W  </second_frame>
            <third_frame>   *  L  V  F  L  K  V  S  L  F  L  Y  Y  F  Q  F  *  V  N  F  G  F  F  C  V  C  S  L  S  C  *  *  S  H  V  G  V  F  C  F  C  F  L  V  D  *  T  F  L  T  L  W  V  V  G  L  W  S  V  C  G  F  S  Q  S  K  F  G  F  *  Y  L  D  H  L  C  Y  S  *  R  W  S  F  S  A  *  S  *  L  V  F  F  L  T  L  L  N  L  D  F  A  C  M  C  S  F  S  Q  L  K  L  G  S  L  D  S  L  W  M  I  A  I  L  F  S  W  E  L  L  I  C  L  I  L  M  C  S  H  L  *  S  S  C  G  R  H  S  Y  L  V  P  V  G  G  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0059P18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="87045" PGL_stop="91123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87045" e_stop="87282"/>
            <exon e_start="87958" e_stop="88088"/>
            <exon e_start="88634" e_stop="88803"/>
            <exon e_start="89295" e_stop="89372"/>
            <exon e_start="90026" e_stop="90170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.493" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87045" e_stop="87282" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.789">
            <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87958" e_stop="88088" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88634" e_stop="88803" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.493" acc_prob="0.968">
            <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89295" e_stop="89372" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90026" e_stop="90170" e_length="145"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87045" stop="87282"/>
              <exon start="87958" stop="88088"/>
              <exon start="88634" stop="88803"/>
              <exon start="89295" stop="89372"/>
              <exon start="90026" stop="90170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG : TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG : ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG : TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG : AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG</gDNA_template>
            <first_frame> L  G  R  K  L  N  P  K  K  K  K  K  R  K  Q  V  S  G  E  E  I  P  N  S  P  R  R  R  R  T  *  I  S  F  S  F  E  F  N  Q  L  M  D  K  A  K  S  L  E  F  I  A  V  V  *  N  S  L  V  K  F  D  K  N  P  N  S  E  A  K  I  Y  S  P  S  L  Q  A  S   : V  L  A  I  M  N  M  K  K  K  P  L  S  L  V  S  L  C  L  G  V  I  G  R  H  F  E  D  I  I  E  D  L  A  E  I  A  A  I  P  S  T  M  K  :  M  A  L  V  A  I  A  R  R  R  R  L  L  N  D  D  V  I  V  A  L  A  D  S  S  W  K  I  L  D  L  S  G  S  D  V  S  D  F  G  L  S  Q  V  V  K  T  C  N  H  L  Q  A  V  D  I  S :   R  C  S  N  L  T  S  A  S  V  S  E  L  L  Q  N  C  R  S  L  E  I  L  R  W  G :   G  C  P  R  S  E  N  T  A  R  R  C  L  R  F  L  K  P  I  L  E  N  V  E  G  D  S  W  E  E  L  D  T  L  E  I  A  H  G  A  T  S  L  R  W  L  L  W </first_frame>
            <second_frame>  *  V  E  N  *  T  Q  K  K  K  R  K  G  N  K  S  P  A  K  K  F  P  I  H  P  V  G  V  E  P  E  S  A  S  P  L  N  S  I  S  *  W  T  K  Q  N  P  L  N  S  S  L  S  Y  R  I  L  W  S  S  L  T  R  I  L  I  Q  K  L  K  F  T  A  L  L  Y  K  H  L  :  Y  *  L  L  *  I  *  R  K  S  L  L  A  W  L  A  C  V  L  E  L  L  V  D  I  L  R  I  S  L  K  T  S  P  R  *  L  L  F  R  P  Q  *  R :   W  H  L  W  Q  L  Q  E  G  E  G  Y  *  M  T  M  S  L  L  H  W  L  I  A  P  G  K  Y  W  T  C  L  V  Q  M  F  R  I  L  A  Y  H  K  W  L  K  H  A  T  I  C  K  Q  L  I  *   : V  A  A  A  I  S  H  Q  P  V  Y  Q  N  S  C  R  T  A  G  L  W  K  Y  *  D  G   : E  A  A  L  G  V  R  T  Q  L  V  D  A  S  V  S  *  N  Q  Y  *  R  T  W  K  E  I  L  G  R  N  L  I  P  W  K  *  L  M  V  R  H  P  C  V  G  F  Y   </second_frame>
            <third_frame>   R  S  K  I  K  P  K  K  K  K  E  K  E  T  S  L  R  R  R  N  S  Q  F  T  P  S  A  S  N  L  N  Q  L  L  L  *  I  Q  S  V  D  G  Q  S  K  I  P  *  I  H  R  C  R  I  E  F  S  G  Q  V  *  Q  E  S  *  F  R  S  *  N  L  Q  P  F  F  T  S  I  C :   I  S  Y  Y  E  Y  E  E  K  A  S  *  L  G  *  L  V  S  W  S  Y  W  *  T  F  *  G  Y  H  *  R  P  R  R  D  S  C  Y  S  V  H  N  E   : D  G  T  C  G  N  C  K  K  E  K  V  I  E  *  R  C  H  C  C  I  G  *  *  L  L  E  N  T  G  L  V  W  F  R  C  F  G  F  W  P  I  T  S  G  *  N  M  Q  P  S  A  S  S  *  Y  K  :  S  L  Q  Q  S  H  I  S  Q  C  I  R  T  L  A  E  L  P  V  S  G  N  I  E  M  G  :  R  L  P  S  E  *  E  H  S  S  *  M  P  P  F  L  E  T  N  T  R  E  R  G  R  R  F  L  G  G  T  *  Y  L  G  N  S  S  W  C  D  I  L  A  L  A  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87210" stop="87282"/>
                    <exon start="87958" stop="88088"/>
                    <exon start="88634" stop="88803"/>
                    <exon start="89295" stop="89372"/>
                    <exon start="90026" stop="90170"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLVKFDKNPNSEAKIYSPSLQASVLAIMNMKKKPLSLVSLCLGVIGRHFEDIIEDLAEIAAIPSTMKMALVAIARRRRLLNDDVIVALADSSWKILDLSGSDVSDFGLSQVVKTCNHLQAVDISRCSNLTSASVSELLQNCRSLEILRWGGCPRSENTARRCLRFLKPILENVEGDSWEELDTLEIAHGATSLRWLLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88705" e_stop="88803"/>
            <exon e_start="89202" e_stop="89372"/>
            <exon e_start="90026" e_stop="90170"/>
            <exon e_start="90606" e_stop="91123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.493" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88705" e_stop="88803" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.493" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88804" i_stop="89201" i_length="398"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89202" e_stop="89372" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90026" e_stop="90170" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="90606" e_stop="91123" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88705" stop="88803"/>
              <exon start="89202" stop="89372"/>
              <exon start="90026" stop="90170"/>
              <exon start="90606" stop="91123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG : GCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG : AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG : CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAATGCCGCCGTCAAAGAGT</gDNA_template>
            <first_frame> L  L  E  N  T  G  L  V  W  F  R  C  F  G  F  W  P  I  T  S  G  *  N  M  Q  P  S  A  S  S  *  Y  K  :  A  T  L  S  P  I  S  V  L  F  P  L  L  N  L  N  L  V  L  K  C  K  P  K  Y  E  H  P  L  S  Q  S  L  Q  Q  S  H  I  S  Q  C  I  R  T  L  A  E  L  P  V  S  G  N  I  E  M  G  :  R  L  P  S  E  *  E  H  S  S  *  M  P  P  F  L  E  T  N  T  R  E  R  G  R  R  F  L  G  G  T  *  Y  L  G  N  S  S  W  C  D  I  L  A  L  A  F  M   : A  K  S  *  K  G  P  A  G  D  S  V  *  R  M  P  T  S  H  S  K  S  K  A  I  A  T  R  L  Q  G  A  *  Y  T  *  R  S  K  T  R  C  F  I  R  *  S  H  C  *  R  Y  *  P  Q  N  L  G  S  F  *  I  C  T  *  S  I  T  I  I  S  F  K  I  R  R  F  A  H  C  G  E  V  *  T  C  I  S  *  E  R  Y  *  T  S  T  K  A  S  K  E  C  K  T  T  P  T  T  C  R  K  G  M  G  N  D  E  *  *  G  K  S  S  S  T  C  L  T  G  K  Q  I  L  E  H  P  E  L  K  I  N  V  L  L  I  R  N  P  F  L  I  S  V  S  Q  Q  Y  K  M  L  L  Y  I  L  F  Q  A  M  P  P  S  K  S </first_frame>
            <second_frame>  S  W  K  I  L  D  L  S  G  S  D  V  S  D  F  G  L  S  Q  V  V  K  T  C  N  H  L  Q  A  V  D  I  R :   P  R  F  H  L  F  Q  S  F  F  R  C  S  T  *  I  W  F  *  N  V  N  L  N  M  N  I  H  C  H  S  R  C  S  N  L  T  S  A  S  V  S  E  L  L  Q  N  C  R  S  L  E  I  L  R  W  G :   G  C  P  R  S  E  N  T  A  R  R  C  L  R  F  L  K  P  I  L  E  N  V  E  G  D  S  W  E  E  L  D  T  L  E  I  A  H  G  A  T  S  L  R  W  L  L  W  :  P  K  V  E  K  D  Q  L  E  I  L  S  E  E  C  P  R  V  I  V  N  P  K  P  S  P  L  G  Y  R  G  L  D  I  P  R  E  A  R  L  D  V  S  L  D  D  P  I  V  E  D  I  D  P  K  T  W  A  V  S  R  F  V  P  R  A  S  P  S  S  V  S  R  S  E  D  L  P  I  A  E  K  F  R  L  A  F  L  E  R  D  T  R  L  A  P  K  R  A  K  N  A  R  Q  H  Q  R  R  A  E  K  E  W  V  T  M  N  S  R  A  K  A  V  A  L  A  S  L  A  S  K  S  L  N  I  R  N  *  K  *  M  F  Y  L  Y  E  T  R  F  *  S  L  S  V  N  N  T  K  C  F  C  I  Y  S  F  R  Q  C  R  R  Q  R   </second_frame>
            <third_frame>   P  G  K  Y  W  T  C  L  V  Q  M  F  R  I  L  A  Y  H  K  W  L  K  H  A  T  I  C  K  Q  L  I  *   : G  H  A  F  T  Y  F  S  P  F  S  A  A  Q  L  K  F  G  F  E  M  *  T  *  I  *  T  S  I  V  T  V  A  A  A  I  S  H  Q  P  V  Y  Q  N  S  C  R  T  A  G  L  W  K  Y  *  D  G   : E  A  A  L  G  V  R  T  Q  L  V  D  A  S  V  S  *  N  Q  Y  *  R  T  W  K  E  I  L  G  R  N  L  I  P  W  K  *  L  M  V  R  H  P  C  V  G  F  Y  G :   Q  K  L  K  R  T  S  W  R  F  C  L  K  N  A  H  E  S  *  *  I  Q  S  H  R  H  S  V  T  G  G  L  I  Y  L  E  K  Q  D  *  M  F  H  *  M  I  P  L  L  K  I  L  T  P  K  P  G  Q  F  L  D  L  Y  L  E  H  H  H  H  Q  F  Q  D  Q  K  I  C  P  L  R  R  S  L  D  L  H  F  L  R  E  I  L  D  *  H  Q  S  E  Q  R  M  Q  D  N  T  N  D  V  Q  K  R  N  G  *  R  *  I  V  G  Q  K  Q  *  H  L  P  H  W  Q  A  N  P  *  T  S  G  T  E  N  K  C  F  T  Y  T  K  P  V  F  D  L  C  Q  S  T  I  Q  N  A  S  V  Y  T  L  S  G  N  A  A  V  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89260" stop="89372"/>
                    <exon start="90026" stop="90170"/>
                    <exon start="90606" stop="91019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVNLNMNIHCHSRCSNLTSASVSELLQNCRSLEILRWGGCPRSENTARRCLRFLKPILENVEGDSWEELDTLEIAHGATSLRWLLWPKVEKDQLEILSEECPRVIVNPKPSPLGYRGLDIPREARLDVSLDDPIVEDIDPKTWAVSRFVPRASPSSVSRSEDLPIAEKFRLAFLERDTRLAPKRAKNARQHQRRAEKEWVTMNSRAKAVALASLASKSLNIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="97337" PGL_stop="92655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97337" e_stop="97200"/>
            <exon e_start="96419" e_stop="96363"/>
            <exon e_start="96175" e_stop="96123"/>
            <exon e_start="95200" e_stop="95149"/>
            <exon e_start="94763" e_stop="94701"/>
            <exon e_start="94601" e_stop="94542"/>
            <exon e_start="93634" e_stop="93592"/>
            <exon e_start="93113" e_stop="92655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.226" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97337" e_stop="97200" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.988">
            <gDNA_intron_boundary i_start="97199" i_stop="96420" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96419" e_stop="96363" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="96362" i_stop="96176" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96175" e_stop="96123" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96122" i_stop="95201" i_length="922"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95200" e_stop="95149" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95148" i_stop="94764" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94763" e_stop="94701" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.226">
            <gDNA_intron_boundary i_start="94700" i_stop="94602" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94601" e_stop="94542" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94541" i_stop="93635" i_length="907"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93634" e_stop="93592" e_length="43"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93591" i_stop="93114" i_length="478"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="93113" e_stop="92655" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97337" stop="97200"/>
              <exon start="96419" stop="96363"/>
              <exon start="96175" stop="96123"/>
              <exon start="95200" stop="95149"/>
              <exon start="94763" stop="94701"/>
              <exon start="94601" stop="94542"/>
              <exon start="93634" stop="93592"/>
              <exon start="93113" stop="92655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344742" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCA : TGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAG : TTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAG : GAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTC : GTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTG : GTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAG : GTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAG : GTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACAATTGATAAGATCTTAACAGAAGAAAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAGAGTAGAGTGTATCCATATCGTAAAGAG</gDNA_template>
            <first_frame> E  N  T  D  *  D  F  E  E  C  R  N  C  G  R  G  F  Q  V  Y  S  A  A  R  I  L  *  G  L  I  K  *  A  I  A  I  L  K  I  L  R  S  L  M  V  S  :  *  R  K  R  D  G  *  H  L  K  E  R  K  I  Q  P  P  F  Q  :  L  N  G  Y  V  G  *  M  D  S  G  R  M  L  Q  L  Q  R :   K  W  L  S  W  R  P  E  G  N  L  L  S  L  I  L  L  :  V  S  R  R  K  R  R  K  E  W  P  K  K  A  R  G  K  P  Q  T  L  :  V  K  L  M  V  Q  I  *  K  V  S  F  N  N  F  R  M  L  Q  K  :  V  I  Q  R  Q  K  P  L  I  H  S  M  K  K   : G  R  Q  S  Q  L  V  P  V  N  P  L  D  Q  E  H  G  N  L  L  P  E  I  T  Q  T  Q  R  G  T  F  S  F  L  L  M  F  Y  F  K  D  I  R  *  L  Q  K  L  N  T  R  N  *  R  H  A  M  W  Q  S  H  S  F  S  S  R  M  F  A  P  N  Y  C  F  C  P  S  C  Y  L  F  Q  G  H  F  I  F  D  R  T  T  P  T  F  G  *  L  I  V  N  C  Q  I  C  T  M  L  L  Y  P  L  M  Y  C  K  V  L  L  Y  *  Q  L  I  R  S  *  Q  K  K  N  N  N  I  P  C  V  I  P  *  I  G  I  S  G  E  *  S  V  S  I  S  *  R  </first_frame>
            <second_frame>  K  I  L  T  E  I  L  K  N  V  E  I  V  G  E  V  F  R  F  I  Q  Q  Q  E  F  C  R  D  *  *  S  R  Q  S  L  F  *  K  Y  *  G  A  *  W  C  H :   E  G  K  E  M  G  D  I  *  R  R  G  R  S  N  L  H  S  S :   *  M  D  M  L  V  E  W  T  A  E  E  C  S  N  S  R   : G  N  G  *  V  G  G  Q  K  G  I  C  *  A  *  Y  C  S :   S  Q  E  G  R  G  G  K  N  G  Q  R  R  Q  E  E  S  H  K  H  W :   *  S  *  W  S  R  F  K  K  F  R  S  T  I  S  G  C  F  K  R :   *  Y  K  G  R  S  L  *  Y  T  A  *  K  K  :  V  V  R  A  N  W  Y  R  *  I  L  *  T  R  N  M  A  T  S  Y  L  R  S  L  R  L  N  G  E  P  L  V  F  S  *  C  S  I  S  R  T  S  D  D  C  R  S  *  I  Q  G  T  N  A  T  Q  C  G  S  L  I  L  S  P  H  G  C  L  P  R  I  I  V  S  V  L  P  V  T  C  F  R  V  I  S  F  L  I  G  L  H  Q  L  S  D  D  *  S  S  I  V  K  S  A  L  C  S  F  T  L  *  C  T  V  K  F  C  Y  I  D  N  *  *  D  L  N  R  R  K  I  T  T  Y  P  V  *  S  H  K  L  G  S  R  E  S  R  V  Y  P  Y  R  K  E </second_frame>
            <third_frame>   K  Y  *  L  R  F  *  R  M  S  K  L  W  A  R  F  S  G  L  F  S  S  K  N  F  V  G  I  D  K  V  G  N  R  Y  F  K  N  I  E  E  L  D  G  V   : M  K  E  K  R  W  V  T  F  K  G  E  E  D  P  T  S  I  P   : V  E  W  I  C  W  L  N  G  Q  R  K  N  A  P  T  P  E  :  E  M  A  E  L  E  A  R  R  E  F  V  K  L  N  I  A   : R  L  K  K  E  E  E  E  R  M  A  K  E  G  K  R  K  A  T  N  I   : G  K  A  D  G  P  D  L  K  S  F  V  Q  Q  F  P  D  A  S  K   : G  D  T  K  A  E  A  S  D  T  Q  H  E  K  R :   S  S  E  P  T  G  T  G  E  S  F  R  P  G  T  W  Q  P  P  T  *  D  H  S  D  S  T  G  N  L  *  F  S  L  D  V  L  F  Q  G  H  Q  M  T  A  E  V  E  Y  K  E  L  T  P  R  N  V  A  V  S  F  F  L  L  T  D  V  C  P  E  L  L  F  L  S  F  L  L  L  V  S  G  S  F  H  F  *  *  D  Y  T  N  F  R  M  I  N  R  Q  L  S  N  L  H  Y  A  P  L  P  F  D  V  L  *  S  S  A  I  L  T  I  D  K  I  L  T  E  E  K  *  Q  H  T  L  C  N  P  I  N  W  D  L  G  R  V  E  C  I  H  I  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97314" stop="97200"/>
                    <exon start="96419" stop="96363"/>
                    <exon start="96175" stop="96123"/>
                    <exon start="95200" stop="95149"/>
                    <exon start="94763" stop="94701"/>
                    <exon start="94601" stop="94542"/>
                    <exon start="93634" stop="93592"/>
                    <exon start="93113" stop="93050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMSKLWARFSGLFSSKNFVGIDKVGNRYFKNIEELDGVMKEKRWVTFKGEEDPTSIPVEWICWLNGQRKNAPTPEEMAELEARREFVKLNIARLKKEEEERMAKEGKRKATNIGKADGPDLKSFVQQFPDASKGDTKAEASDTQHEKRSSEPTGTGESFRPGTWQPPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="104691" PGL_stop="101679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104691" e_stop="104516"/>
            <exon e_start="103461" e_stop="102793"/>
            <exon e_start="102701" e_stop="102513"/>
            <exon e_start="102427" e_stop="102339"/>
            <exon e_start="102131" e_stop="101679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.849" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="104691" e_stop="104516" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104515" i_stop="103462" i_length="1054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103461" e_stop="102793" e_length="669"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.891">
            <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102701" e_stop="102513" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102427" e_stop="102339" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102131" e_stop="101679" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104691" stop="104516"/>
              <exon start="103461" stop="102793"/>
              <exon start="102701" stop="102513"/>
              <exon start="102427" stop="102339"/>
              <exon start="102131" stop="101679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAATAATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAG : GTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG : GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACG : CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA : GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</gDNA_template>
            <first_frame> H  Q  *  W  S  S  N  *  R  Y  Y  Y  Y  Y  Y  S  L  *  H  P  F  R  S  S  A  E  Q  S  E  L  E  K  K  *  N  I  S  D  L  R  R  V  R  P  F  V  C  H  G  I  H  N  L  P  L  N  L  N  R :   F  T  S  H  *  L  E  T  N  T  *  G  Y  H  G  *  Q  L  I  N  L  L  L  Q  L  L  N  M  E  H  P  L  E  N  I  V  I  K  L  K  E  K  V  P  S  T  V  T  C  F  I  V  L  G  *  Y  I  I  L  *  *  D  H  C  K  T  A  Q  C  I  S  T  D  V  V  E  K  I  R  S  S  S  S  K  L  H  R  L  S  F  L  L  L  L  Q  W  Q  E  I  *  A  K  L  D  G  R  S  Q  L  *  T  I  *  T  N  V  N  M  M  F  I  C  S  L  V  T  F  L  M  L  I  M  F  N  I  G  G  T  H  L  V  N  W  F  S  R  W  L  V  Q  D  H  G  W  *  L  K  G  I  M  K  K  K  T  Y  H  S  L  W  M  N  L  Y  L  T  T  P  G  G  R  C  H  L  R  R  V  D  L  L  R  I  S  T  I  H  L  T  L  L  G  F  I  Q  S  C  L  V  H  I  L  I  T  M  T  T  L  I  N  I  D  G  *  R :   L  I  F  I  R  L  I  A  I  R  L  L  G  W  L  C  Y  S  M  C  H  G  I  T  V  M  R  L  I  K  V  K  L  M  T  *  W  H  L  L  S  L  C  Y  M  Q  L  V  Q  I  *  Y  L  L  G  M  F  M  L  M  N  A  R :   N  E  F  I  M  V  N  L  I  L  V  V  L  S  T  *  Q  L  V  M  E  E  T  K  K  V  *  R  A   : S  T  S  Y  P  N  Q  N  G  L  C  S  A  K  Q  A  L  A  M  V  N  L  R  *  L  I  Q  L  M  P  L  G  A  G  I  E  M  M  M  M  N  Q  *  G  L  I  K  F  R  L  P  R  *  L  I  Q  D  A  A  A  L  E  S  *  T  K  R  N  P  W  K  L  L  A  L  L  V  T  E  T  N  Y  L  F  L  L  L  S  K  F  R  R  Y  I  E  *  C  L  L  L  L  K  L  N  S  Q  K  L  E  D  E  S  C  K  L  N  T  M  P  *  K  C  N  *  L  F  C  R  K  H  L  *  F  R  S  F  S  M  N  V  Y  M  *  L  K  K  *  S  I  N  Y  </first_frame>
            <second_frame>  T  N  N  G  A  Q  I  E  D  T  T  T  I  I  T  L  F  D  I  H  S  V  H  Q  Q  N  S  P  S  W  R  R  S  R  I  S  P  T  S  A  A  *  G  L  S  F  A  M  G  S  T  I  F  L  S  T  S  T   : G  S  H  L  I  S  W  R  Q  T  H  K  G  I  M  G  D  N  *  *  I  F  S  F  N  C  *  I  W  N  I  H  W  K  I  *  L  *  S  S  R  R  K  Y  Q  V  Q  L  P  V  L  S  F  W  D  D  T  S  Y  C  D  R  T  I  A  R  Q  H  S  V  F  L  Q  M  W  W  R  R  S  G  V  P  V  Q  N  S  T  V  *  V  S  C  Y  F  C  S  G  R  R  F  R  P  N  W  M  D  E  V  N  F  R  P  Y  R  P  M  *  I  *  C  S  F  A  P  W  *  P  F  L  C  *  L  C  S  T  *  V  G  H  I  W  S  T  G  S  A  A  G  *  C  K  T  M  D  G  D  S  R  E  S  *  K  R  K  H  T  I  R  C  G  *  I  Y  I  L  Q  L  Q  V  E  D  A  I  *  G  E  W  I  Y  F  E  S  L  L  F  I  *  R  C  W  G  S  Y  N  H  A  W  F  I  Y  *  L  R  *  L  L  *  S  I  S  M  A  E   : G  *  S  S  *  G  *  S  Q  *  D  S  L  V  G  C  V  I  P  C  A  M  V  *  Q  *  *  G  S  S  R  *  S  *  *  H  D  G  I  Y  *  A  S  V  I  C  S  W  C  R  Y  S  I  C  W  A  C  S  C  L  *  T  H   : A  T  S  L  *  W  *  T  *  S  L  W  C  C  P  H  N  N  W  *  W  R  K  Q  R  R  F  S  A  Q  :  V  Q  A  T  P  T  R  M  V  C  V  P  R  S  K  L  W  P  W  *  T  C  D  N  *  F  N  S  C  L  L  E  L  A  *  K  *  *  *  *  T  S  E  V  *  S  S  F  D  Y  L  V  D  *  F  R  M  Q  Q  R  *  S  H  E  L  R  E  I  L  G  S  S  *  L  Y  L  *  Q  K  P  T  T  C  S  Y  Y  *  V  N  L  G  D  I  L  S  N  V  S  C  C  S  N  S  T  V  K  N  L  K  M  R  A  V  S  *  I  P  C  H  K  N  V  T  N  C  S  V  E  N  I  Y  N  S  E  A  L  A  *  T  F  T  C  N  S  K  S  S  L  S  T  T </second_frame>
            <third_frame>   P  I  M  E  L  K  L  K  I  L  L  L  L  L  L  S  L  T  S  I  P  F  I  S  R  T  V  R  A  G  E  E  V  E  Y  L  R  P  P  P  R  K  A  F  R  L  P  W  D  P  Q  S  S  S  Q  P  Q  Q  :  V  H  I  S  L  A  G  D  K  H  I  R  V  S  W  V  T  T  D  K  S  S  P  S  I  V  E  Y  G  T  S  T  G  K  Y  S  Y  K  A  Q  G  E  S  T  K  Y  S  Y  L  F  Y  R  S  G  M  I  H  H  T  V  I  G  P  L  Q  D  S  T  V  Y  F  Y  R  C  G  G  E  D  P  E  F  Q  F  K  T  P  P  S  K  F  P  V  T  F  A  V  A  G  D  L  G  Q  T  G  W  T  K  S  T  L  D  H  I  D  Q  C  K  Y  D  V  H  L  L  P  G  D  L  S  Y  A  D  Y  V  Q  H  R  W  D  T  F  G  Q  L  V  Q  P  L  A  S  A  R  P  W  M  V  T  Q  G  N  H  E  K  E  N  I  P  F  V  V  D  E  F  I  S  Y  N  S  R  W  K  M  P  F  E  E  S  G  S  T  S  N  L  Y  Y  S  F  D  V  A  G  V  H  T  I  M  L  G  S  Y  T  D  Y  D  D  Y  S  D  Q  Y  R  W  L  K  :  A  D  L  H  K  V  D  R  N  K  T  P  W  L  V  V  L  F  H  V  P  W  Y  N  S  N  E  A  H  Q  G  E  A  D  D  M  M  A  S  I  E  P  L  L  Y  A  A  G  A  D  I  V  F  A  G  H  V  H  A  Y  E  R  T  :  Q  R  V  Y  N  G  K  P  D  P  C  G  A  V  H  I  T  I  G  D  G  G  N  K  E  G  L  A  R  K :   Y  K  L  P  Q  P  E  W  S  V  F  R  E  A  S  F  G  H  G  E  L  A  I  I  N  S  T  H  A  S  W  S  W  H  R  N  D  D  D  E  P  V  R  S  D  Q  V  S  I  T  S  L  I  D  S  G  C  S  S  V  R  V  M  N  *  E  K  S  L  E  A  L  S  S  T  C  N  R  N  Q  L  L  V  L  I  I  K  *  I  *  E  I  Y  *  V  M  S  L  V  A  Q  T  Q  Q  S  K  T  *  R  *  E  L  *  V  E  Y  H  A  I  K  M  *  L  I  V  L  *  K  T  S  I  I  Q  K  L  *  H  E  R  L  H  V  T  Q  K  V  V  Y  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104689" stop="104516"/>
                    <exon start="103461" stop="102793"/>
                    <exon start="102701" stop="102513"/>
                    <exon start="102427" stop="102339"/>
                    <exon start="102131" stop="101936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIMELKLKILLLLLLSLTSIPFISRTVRAGEEVEYLRPPPRKAFRLPWDPQSSSQPQQVHISLAGDKHIRVSWVTTDKSSPSIVEYGTSTGKYSYKAQGESTKYSYLFYRSGMIHHTVIGPLQDSTVYFYRCGGEDPEFQFKTPPSKFPVTFAVAGDLGQTGWTKSTLDHIDQCKYDVHLLPGDLSYADYVQHRWDTFGQLVQPLASARPWMVTQGNHEKENIPFVVDEFISYNSRWKMPFEESGSTSNLYYSFDVAGVHTIMLGSYTDYDDYSDQYRWLKADLHKVDRNKTPWLVVLFHVPWYNSNEAHQGEADDMMASIEPLLYAAGADIVFAGHVHAYERTQRVYNGKPDPCGAVHITIGDGGNKEGLARKYKLPQPEWSVFREASFGHGELAIINSTHASWSWHRNDDDEPVRSDQVSITSLIDSGCSSVRVMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="109330" PGL_stop="105522"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109330" e_stop="108937"/>
            <exon e_start="108408" e_stop="107943"/>
            <exon e_start="106556" e_stop="106501"/>
            <exon e_start="106425" e_stop="106295"/>
            <exon e_start="106209" e_stop="106113"/>
            <exon e_start="106040" e_stop="105879"/>
            <exon e_start="105767" e_stop="105522"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.054" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109330" e_stop="108937" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108408" e_stop="107943" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.949">
            <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106556" e_stop="106501" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106425" e_stop="106295" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.931">
            <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106209" e_stop="106113" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106040" e_stop="105879" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.054" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105522" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109330" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG : CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG : CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT : ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG : AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG : TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTA</gDNA_template>
            <first_frame> V  T  V  P  F  F  F  S  L  F  H  T  P  R  V  S  S  *  L  V  R  F  R  L  K  N  D  A  T  K  W  S  C  S  A  S  N  G  T  Y  V  N  G  S  V  S  A  A  S  S  A  D  A  A  A  T  T  M  D  D  A  T  S  A  S  S  T  T  S  I  S  T  F  L  G  S  A  A  T  T  A  I  A  N  Y  V  S  T  V  C  C  D  *  F  *  P  *  L  E  C  *  S  K  *  G  *  V  S  L  D  W  G  L  A  V  L  D  G  *  E  L  S  L  H  L  F  L  S  H  R  R   : A  C  F  C  *  G  H  Q  E  Q  A  K  W  P  V  *  R  L  W  I  P  R  I  Q  E  S  C  G  C  R  N  C  F  T  N  I  *  W  R  L  D  A  K  C  G  T  E  F  P  Y  E  L  G  I  S  W  C  R  *  E  A  R  *  F  T  R  V  H  N  I  C  W  *  F  G  C  *  C  D  G  L  C  A  T  R  D  I  Q  T  R  V  F  I  S  K  R  C  K  S  C  N  R  *  N  Y  W  T  Y  Q  G  I  W  I  C  Q  V  L  *  *  E  *  T  I  A  C  Y  D  *  N  E  W  C  T  L  F  I  *  A  H  E  D  W  P  G  C  K  Q  E  T  N  G  Y  P  P  E  S :   Y  L  P  K  S  S  S  Y  S  R  R  K  *  P  Q  *  Y  N   : Y  I  C  W  W  F  G  S  Q  C  C  R  R  A  F  A  T  S  F  L  P  I  W  *  I  G  S  R  E  D  S  G  W  K  A  L  W  L  C  S  V  W  *  *  :  S  F  C  *  A  G  F  V  K  L  E  W  H  T  I  G  R  T  K  H  S  A  F  L  G  A  *  P  L  *  Q  T   : V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  </first_frame>
            <second_frame>  S  P  F  H  F  F  S  L  S  F  I  P  L  G  F  H  L  S  S  F  D  F  A  *  K  M  M  P  Q  S  G  V  A  Q  P  A  M  A  P  M  S  M  D  Q  Y  Q  Q  Q  A  P  P  T  Q  Q  Q  Q  Q  W  M  M  Q  P  P  Q  A  Q  Q  P  Q  F  Q  P  S  W  G  Q  Q  Q  Q  Q  P  S  Q  T  M  S  Q  Q  Y  V  A  T  N  S  S  P  S  S  N  V  N  P  N  E  V  R  S  L  W  I  G  D  L  Q  Y  W  M  D  E  S  Y  L  S  T  C  F  Y  H  T  G  E  :  L  V  S  A  K  V  I  R  N  K  Q  S  G  Q  S  E  G  Y  G  F  L  E  F  R  S  H  A  A  A  E  T  V  L  Q  T  Y  N  G  A  L  M  P  N  V  E  Q  N  F  R  M  N  W  A  S  L  G  A  G  E  R  R  D  D  S  P  E  Y  T  I  F  V  G  D  L  A  A  D  V  T  D  Y  V  L  Q  E  T  F  K  P  V  Y  S  S  V  K  G  A  K  V  V  T  D  R  I  T  G  R  T  K  G  Y  G  F  V  K  F  S  D  E  S  E  Q  L  R  A  M  T  E  M  N  G  V  L  C  S  S  R  P  M  R  I  G  P  A  A  N  K  K  P  M  G  T  P  Q  K   : A  T  Y  Q  N  P  Q  A  T  Q  G  E  S  D  P  N  N  T  T  :  I  F  V  G  G  L  D  P  S  V  A  E  E  H  L  R  Q  V  F  S  P  Y  G  E  L  V  H  V  K  I  V  A  G  K  R  C  G  F  V  Q  F  G  S  R :   A  S  A  E  Q  A  L  S  S  L  N  G  T  Q  L  G  G  Q  S  I  R  L  S  W  G  R  S  P  S  N  K  Q  :  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L </second_frame>
            <third_frame>   H  R  S  I  F  F  L  S  L  S  Y  P  *  G  F  I  L  A  R  S  I  S  P  E  K  *  C  H  K  V  E  L  L  S  Q  Q  W  H  L  C  Q  W  I  S  I  S  S  K  L  R  R  R  S  S  N  N  N  G  *  C  N  L  R  K  L  N  N  L  N  F  N  L  L  G  V  S  S  N  N  S  H  R  K  L  C  L  N  S  M  L  R  L  I  L  A  L  A  R  M  L  I  Q  M  R  L  G  L  F  G  L  G  T  C  S  I  G  W  M  R  V  I  S  P  L  V  S  I  T  P  A  S :   L  F  L  L  R  S  S  G  T  S  K  V  A  S  L  K  V  M  D  S  S  N  S  G  V  M  R  L  Q  K  L  F  Y  K  H  I  M  A  P  *  C  Q  M  W  N  R  I  S  V  *  T  G  H  L  L  V  P  V  R  G  E  M  I  H  P  S  T  Q  Y  L  L  V  I  W  L  L  M  *  R  I  M  C  Y  K  R  H  S  N  P  C  I  H  Q  *  K  V  Q  K  L  *  Q  I  E  L  L  D  V  P  R  D  M  D  L  S  S  S  L  M  R  V  N  N  C  V  L  *  L  K  *  M  V  Y  F  V  H  L  G  P  *  G  L  A  R  L  Q  T  R  N  Q  W  V  P  P  R  K  :  L  P  T  K  I  L  K  L  L  K  A  K  V  T  P  I  I  Q  L :   Y  L  L  V  V  W  I  P  V  L  Q  K  S  I  C  D  K  F  S  P  H  M  V  N  W  F  T  *  R  *  W  L  E  S  A  V  A  L  F  S  L  V  V   : E  L  L  L  S  R  L  C  Q  A  *  M  A  H  N  W  E  D  K  A  F  G  F  L  G  G  V  A  P  L  T  N  S :   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109257" stop="108937"/>
                    <exon start="108408" stop="107943"/>
                    <exon start="106556" stop="106501"/>
                    <exon start="106425" stop="106295"/>
                    <exon start="106209" stop="106113"/>
                    <exon start="106040" stop="105879"/>
                    <exon start="105767" stop="105765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMPQSGVAQPAMAPMSMDQYQQQAPPTQQQQQWMMQPPQAQQPQFQPSWGQQQQQPSQTMSQQYVATNSSPSSNVNPNEVRSLWIGDLQYWMDESYLSTCFYHTGELVSAKVIRNKQSGQSEGYGFLEFRSHAAAETVLQTYNGALMPNVEQNFRMNWASLGAGERRDDSPEYTIFVGDLAADVTDYVLQETFKPVYSSVKGAKVVTDRITGRTKGYGFVKFSDESEQLRAMTEMNGVLCSSRPMRIGPAANKKPMGTPQKATYQNPQATQGESDPNNTTIFVGGLDPSVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGSRASAEQALSSLNGTQLGGQSIRLSWGRSPSNKQSDQAQWGGSAGAGAGAYYGYAQGYEAYGYAPPAQDPNMYYGNYPGYGNYQQPQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="114436" PGL_stop="112046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114436" e_stop="113990"/>
            <exon e_start="113588" e_stop="113313"/>
            <exon e_start="112809" e_stop="112486"/>
            <exon e_start="112193" e_stop="112046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.537" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114436" e_stop="113990" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.537" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113588" e_stop="113313" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113312" i_stop="112810" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112809" e_stop="112486" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="112485" i_stop="112194" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="112193" e_stop="112046" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114436" stop="113990"/>
              <exon start="113588" stop="113313"/>
              <exon start="112809" stop="112486"/>
              <exon start="112193" stop="112046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG : GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAG : GTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAG : GTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGCAAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCTCCACTGATGTTGCTT</gDNA_template>
            <first_frame> F  N  S  R  R  P  F  I  F  C  S  P  A  G  H  F  H  Q  *  A  I  A  K  G  M  G  K  H  A  P  K  S  R  K  V  K  I  Q  N  R  L  S  E  V  H  E  I  E  L  L  E  E  W  I  E  S  G  K  P  E  S  G  S  N  P  L  S  L  E  P  L  P  H  K  A  P  V  G  R  L  P  D  G  S  F  S  R  Y  A  G  C  D  R  F  S  Q  L  P  V  S  K  K  T  K  D  G  L  T  Q  C  K  Y  K  T  M  T  D  I  Q  R  A  S  L  P  H  S  L  C  G  R  D  I  L  G  A  A  K  T  G  S  G  K  T  L  A  F  V  I  P  :  V  L  E  K  L  Y  K  A  R  W  G  P  E  D  G  V  G  C  I  I  M  S  P  T  R  E  L  A  G  Q  L  F  E  V  L  K  S  V  G  K  H  Q  G  F  S  A  G  L  L  I  G  G  R  K  D  V  D  A  E  K  E  H  V  N  G  L  N  I  L  V  C  T  P  G  R  L  L  Q  H  M  D  E  T  P  N  F  D  C  S  Q  L  Q  :  V  L  V  L  D  E  A  D  R  I  L  D  V  G  F  K  R  D  L  N  A  I  I  S  Q  L  P  K  H  R  Q  T  L  L  F  S  A  T  Q  T  K  S  V  Q  D  L  A  R  L  S  L  K  D  P  E  Y  L  G  V  H  E  E  S  D  T  A  T  P  N  R  L  Q  Q  T  A  M  L  V  P  L  D  K  K  F  D  M  L  W  S  F  I  K  A  H  L  N  S  R  I  L  V  F  L  S  S  C  K  Q  :  V  K  F  V  F  E  T  F  K  K  L  R  P  G  I  P  L  K  C  L  H  G  R  M  K  Q  D  R  R  M  R  I  Y  S  Q  F  C  E  Q  R  S  V  L  F  S  T  D  V  A  </first_frame>
            <second_frame>  L  I  L  A  G  R  S  Y  F  A  H  R  R  D  T  S  I  N  K  R  L  Q  K  V  W  E  S  M  H  L  S  H  G  K  L  K  Y  R  I  G  Y  Q  R  F  M  K  L  S  F  W  R  N  G  *  N  Q  V  N  R  N  P  V  Q  I  R  C  R  L  S  H  Y  H  I  K  L  R  L  D  V  F  R  M  V  H  S  L  G  M  L  V  V  I  G  S  V  S  C  R  F  L  R  K  L  K  M  G  *  L  S  A  N  T  K  L  *  P  I  F  K  G  L  L  C  H  T  L  F  A  A  V  I  F  L  V  R  R  K  L  V  L  E  R  L  W  L  L  L  F  R :   C  *  R  N  C  I  K  L  D  G  D  Q  R  T  V  L  D  A  S  *  C  L  P  Q  G  S  *  Q  V  N  F  L  K  Y  L  N  L  L  G  N  I  K  A  S  V  L  A  F  *  L  V  A  A  K  M  L  M  L  K  K  N  M  L  M  D  *  T  S  W  S  V  L  L  V  G  F  F  S  I  W  M  R  H  Q  I  L  I  V  H  N  F  R :   F  *  F  L  M  K  Q  I  V  F  L  M  W  G  L  R  G  I  *  M  Q  S  F  H  N  C  L  S  I  G  R  P  Y  C  F  Q  Q  P  R  P  S  L  S  K  I  W  Q  G  S  A  *  K  T  L  N  I  W  V  Y  T  R  S  P  I  L  R  L  P  T  A  Y  N  K  Q  Q  C  L  F  L  L  I  R  N  L  T  C  C  G  V  L  *  R  H  I  L  T  Q  G  Y  W  F  S  C  Q  A  A  S  R :   *  N  L  F  L  K  L  S  K  N  S  V  L  G  F  P  S  S  V  F  M  E  G  *  S  K  I  E  G  *  E  F  I  P  N  F  V  N  N  V  L  F  C  S  P  L  M  L  L </second_frame>
            <third_frame>   *  F  S  P  A  V  H  I  L  L  T  G  G  T  L  P  S  I  S  D  C  K  R  Y  G  K  A  C  T  *  V  T  E  S  *  N  T  E  S  V  I  R  G  S  *  N  *  A  S  G  G  M  D  R  I  R  *  T  G  I  R  F  K  S  V  V  A  *  A  I  T  T  *  S  S  G  W  T  S  S  G  W  F  I  L  *  V  C  W  L  *  *  V  Q  S  V  A  G  F  *  E  N  *  R  W  V  N  S  V  Q  I  Q  N  Y  D  R  Y  S  K  G  F  S  A  T  L  S  L  R  P  *  Y  S  W  C  G  E  N  W  F  W  K  D  F  G  F  C  Y  S   : G  A  R  E  I  V  *  S  S  M  G  T  R  G  R  C  W  M  H  H  N  V  S  H  K  G  V  S  R  S  T  F  *  S  T  *  I  C  W  E  T  S  R  L  Q  C  W  P  S  D  W  W  P  Q  R  C  *  C  *  K  R  T  C  *  W  I  E  H  P  G  L  Y  S  W  S  A  S  S  A  Y  G  *  D  T  K  F  *  L  F  T  T  S   : G  F  S  S  *  *  S  R  S  Y  S  *  C  G  V  *  E  G  S  K  C  N  H  F  T  I  A  *  A  *  A  D  L  I  V  F  S  N  P  D  Q  V  C  P  R  S  G  K  A  Q  P  E  R  P  *  I  F  G  C  T  R  G  V  R  Y  C  D  S  Q  P  L  T  T  N  S  N  A  C  S  S  *  *  E  I  *  H  V  V  E  F  Y  K  G  T  S  *  L  K  D  I  G  F  P  V  K  L  Q  A   : G  K  I  C  F  *  N  F  Q  K  T  P  S  W  D  S  P  Q  V  S  S  W  K  D  E  A  R  *  K  D  E  N  L  F  P  I  L  *  T  T  F  C  S  V  L  H  *  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114379" stop="113990"/>
                    <exon start="113588" stop="113313"/>
                    <exon start="112809" stop="112486"/>
                    <exon start="112193" stop="112047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIAKGMGKHAPKSRKVKIQNRLSEVHEIELLEEWIESGKPESGSNPLSLEPLPHKAPVGRLPDGSFSRYAGCDRFSQLPVSKKTKDGLTQCKYKTMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKARWGPEDGVGCIIMSPTRELAGQLFEVLKSVGKHQGFSAGLLIGGRKDVDAEKEHVNGLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKRDLNAIISQLPKHRQTLLFSATQTKSVQDLARLSLKDPEYLGVHEESDTATPNRLQQTAMLVPLDKKFDMLWSFIKAHLNSRILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDRRMRIYSQFCEQRSVLFSTDVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 28 chains have been computed
$ 
$ memory statistics:
$ 37424 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2079 bytes was the average size of a spliced alignment
$ 21608 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1662 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 20:42:23
-->
