<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-07 02:27:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E733308" ref_strand="-" ref_description="SGN-E733308 [LB04CB04]">
      <seq>cttttttgatctctgaaatcttgactaaaaatttgctaaaaaaaataaaaaaatcaaatcttggtaaaagatgcatgatttctgctttacgatcccttatgggttaattctggtgactggtggtgtcatgggatatgccagtaaaggaagcacagcttcacttgctggaggtgttggtactggatttgctctgatcttagcgggttacttgagtctgcaagcatttcacaaacgcaaaaattcatactttgccttgattcttgaaactgcttgtgcagccatgttaacatgggttatggggcagcggtacatgcaaacttcaaaactaatgccggctggtgctgttgctggtatcagtgcactcatgactgggttttacctgtacaaaattgccacaagaggaaaccattttccacttaaaactgagtaataccatattatttattttggggttccaatttcatactgtatgtatcaagctaaaaatgtattcttattttatactcaattttatagaattcaatggatcaactcttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="6922" stop="9687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7222" g_stop="7490" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7491" i_stop="8555" i_length="1065">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8556" g_stop="8643" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="357" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8644" i_stop="9207" i_length="564">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9208" g_stop="9390" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="540" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E733308" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733308" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7222" e_stop="7490"/>
          <exon e_start="8556" e_stop="8643"/>
          <exon e_start="9208" e_stop="9390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTGGTATTACCCTTTTCATTTCATTAGAAAAAAACTGCATCTCATATTGGCCAAGCTTGGATCTTTTCTGTTTTATTGTGCTGAAATAGTATTGAATCACAGTTCTTGATTGTGTTATAGCCTCTCATTTATGCTTGTTGTTCTTGAAACTAGGTAGGAATAAAGCATGTGTACACTCTAGCCTCCCCAGACCTTCACTAGATCCGAAGACTAGTTCTAGTTTAGTATTTCTCCTCTTAAAGAATGAAATCTTCTTTGATTTTTGTCCTTCTAAGAAATCGACTGTCTCTCCTGAGCAAAAATGAGATGCAACCCTGGTGTCTTTGTTCTTGTGTGTTTGTTTCTTGTTTGGACCTAAAACTTGATGTGAGCTGTTTGTTCTTATGTGGATACTATCATTGGAAGGTACAGTACTTTAGCATCTAATTGCTATTAGGTTTCCTTTAGGGTTCATTTACCTTTCGAGTATCTGCTTGTGTGTTTCACAGATGTTAAGTTGGAGGTTGGAGCAGATCATTAATATTGGTTGAAGTTTGGAGCAACTATTAACAAAAGAGAACTTCAAAAATATCATGTTATATGATGAACTAAACAAGGTCAAAAGATATATGATTATGCATGTTTCCTCTCAGCATCTCCTTTAACAATGATCAGAAGTATTGTGCAAACCACCATCCTTTGAATGAATTCTGTGATAATCGTGGACTCTCTACCAGTTAGTTGTGTCAACTGCAATCTTAATGTTCAAAAATACAACTTTCCAAGTGAACATTTAACTCAAAAATAACAGTCGATTCATCAAGTTTGAAGCTTTCCAGGGAGTACATGTAATACTATAATAAGCTGTTTTGACCTTGATCAGAACTCTGTAGTTTTCCTACTTGGTGTGTTGCTTAGACGAAATAGAAATGCTAACGCGGAGAGAATATGTTTTTGTTTGTCTGATGGTAGGTTTGATGTCCTTCTGATTCAGATAAGAAAAATCAAAATCTCATCTTTTTTGCTTCTGTTAATGAAATTGCTTTGTTTATTATAGTCGCGCCACTCACTTTACTCGATTCCAAACAGCTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAGGTAACTGCAAATGAAAGCATACCATACTCAACTTGCTCCTTGGTTGCTGTATTTTGTCTATCTTTTTTAAGTACACTAGGTTTGTGAGGTATGACAAATTTTATCATGGCATATCACAACCACATACCCAGTGTAATTCCATAAGTGAGGTTCAAGAGGTTAGAGGTTGTGTGGAATCAAGGCATCACACAGGATGATAATAAATGGAGATTATCGGTAGCAAAGTGTCGGATCCTTGGAAAATGCACTACTTTTTGAGGATCCGACTCAGACTAGACGATATTTTTAAAGAGTCCAAGCAACATAAGGTAACATTGCACAAGGCCTGCAGTTGCAATGTGTCTCTTTCTATTACTCGAGCCAAGCTTGCACACATCGACTATCGAAAAGTTATAATCATAATATCAGGACTAGCTTGCGAGCACCTCGACTAAAATAGTCTTTGTAATTGATTTTCTTATATCTGTGGTGTCTGGACCAGTTTGCGCAGCTCGATCAAAGTGTTTTTGTATCTTTTATATGAGGTTGATGTTATATTTATTTTGTTTTCTCACTTTTCTGCAGTGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTATTT</genome_strand>
        <mrna_strand>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E211156" ref_strand="+" ref_description="SGN-E211156 [cLEC-70-E8]">
      <seq>aacaggaagctgcttcggtgaatattcgtgatatcagtgagttcacttatgaacctccaaatccagatgatatattctcagtgtttgaggaccttaattttgtcgaaagtaatgaaagggaggttgagccatgtcctgcatacagttctgctagccatccctccaaaatttgcacattcagtcctgatgacggtgtatacaacaaagacaacttcctcagacattctcttgcgtataatcagagtgatttagaggaagaaggaagtgaatgggaaacagtgagccatctcgacgagcaaggttctagttattctgctgaaggaagcgtctgttctgtcaacaagaactgcaggcacagcaatgcctcaatggagataagtgaagtatattcagggcaaggtcgacaacttaagaaggtgtcatctatatctaggctttggaaatcaaacggagacaactacaaaaagatatcagctgatggaatacacgggaggctatcaaatggaaggctatcgaatggtgccaccctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29091" stop="30223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29391" g_stop="29923" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E211156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29391" e_stop="29923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCT</genome_strand>
        <mrna_strand>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E548536" ref_strand="+" ref_description="SGN-E548536 [TUS-62-B17]">
      <seq>cgaatggtgccaccctttctccagattgtggttctagtaaaggcgaattcagtccttcagggagctcacttgactcgggcaatccacaaataacacgagggatgaaagggtgcattgagtggccgcgtaactctcacaagcacagtttaaaagcaaaacttctggaagcaagaatggagagccagaaggtccagttacgtcacgtcttgaaacaaaagatctagaagactactgctacaagttttgattttgcccgaatcatcggtctcactcagctgaggtatcaataaaaactcaaacagtagtagtccacattttatgcttactgaaacttctttgtgtatcaatcagaactgctatatagtaatttcatgtaatgtaatttagaagatgcattattggccactatttatatcttttaaaggtatgatttagtggccaattattgcatcatttaacagaagtttcagtatgaggagaaaacaactttgtataattgaattcctttattccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29604" stop="30719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29904" g_stop="30418" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="525"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E548536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29904" e_stop="30418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</genome_strand>
        <mrna_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E541354" ref_strand="-" ref_description="SGN-E541354 [TUS-62-B17]">
      <seq>cgaatggtgccaccctttctccagattgtggttctagtaaaggcgaattcagtccttcagggagctcacttgactcgggcaatccacaaataacacgagggatgaaagggtgcattgagtggccgcgtaactctcacaagcacagtttaaaagcaaaacttctggaagcaagaatggagagccagaaggtccagttacgtcacgtcttgaaacaaaagatctagaagactactgctacaagttttgattttgcccgaatcatcggtctcactcagctgaggtatcaataaaaactcaaacagtagtagtccacattttatgcttactgaaacttctttgtgtatcaatcagaactgctatatagtaatttcatgtaatgtaatttagaagatgcattattggccactatttatatcttttaaaggtatgatttagtggccaattattgcatcatttaacagaagtttcagtatgaggagaaaacaactttgtataattgaattcctttatcctaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29604" stop="30719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29904" g_stop="30411" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="532"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E541354" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29904" e_stop="30411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTT</genome_strand>
        <mrna_strand>CGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E295875" ref_strand="+" ref_description="SGN-E295875 [cLET-27-I21]">
      <seq>gaatggtgccaccctttctccagattgtggttctagtaaaggcgaattcagtccttcagggagctcacttgactcgggcaatccacaaataacacgagggatgaaagggtgcattgagtggccgcgtaactctcacaagcacagtttaaaagcaaaacttctggaagcaagaatggagagccagaaggtccagttacgtcacgtcttgaaacaaaagatctagaagactactgctacaagttttgattttgcccgaatcatcggtctcactcagctgaggtatcaataaaaactcaaacagtagtagtccacattttatgcttactgaaacttctttgtgtatcaatcagaactgctatatagtaatttcatgtaatgtaatttagaagatgcattattggccactatttatatcttttaaaggtatgatttagtggccaattattgcatcatttaacagaagtttcagtatgaggagaaaacaactttgtataattgaattcctttattccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="29605" stop="30719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29905" g_stop="30418" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E295875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29905" e_stop="30418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</genome_strand>
        <mrna_strand>GAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E235862" ref_strand="+" ref_description="SGN-E235862 [cLED-15-L16]">
      <seq>actcgtctttccactttcaattgttgtcgaattaaagcaattccctgttttctggttgaagatggaaggttcagtagtaagaagagtgattccatctgataacagttgtctttttaatgctgttggttatgtgatggaccgtgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttcttgggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaattttttctgtacagagagatgggactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32784" stop="37366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33084" g_stop="33137" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33138" i_stop="33389" i_length="252">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33390" g_stop="33461" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="172" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="281" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="373" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="436" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36996" g_stop="37066" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="507" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E235862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33084" e_stop="33137"/>
          <exon e_start="33390" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTGGTAAGTGCATATACAGATCTTGCAACTATTTTTGAATTTTTTCTGATTTGTTGTCTGAAAGATATCTCGTGTAATCTAGCTGGGGTTTTTTTTTGCGATTTTTTTGGGGTTCAATTTCTTGTAGCAACTGTTCATCCAGATAAAGGTTTAGTTTTTATGATTAATTTGACATTTTTGCTTATCTGGGTGTTCATGGAATTGGTGCTGTTGTAAAGAAAAAAACTGGAAATTTGAGTTCTTTACATTTTGTAGGTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGT</genome_strand>
        <mrna_strand>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTG............................................................................................................................................................................................................................................................GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E303957" ref_strand="+" ref_description="SGN-E303957 [cLEX-4-D22]">
      <seq>gtctttccactttcaattgttgacgaattaaagcaattccctgttttctggttgaagatggaaggttcagtagtaagaagagtgattccatctgataacagttggccttttaatgctgttggttatgtgatggaccgcgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttcttgggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="32788" stop="36698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33088" g_stop="33137" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33138" i_stop="33389" i_length="252">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33390" g_stop="33461" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="122" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="168" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="277" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="369" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36332" g_stop="36391" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="429" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E303957" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33088" e_stop="33137"/>
          <exon e_start="33390" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTGGTAAGTGCATATACAGATCTTGCAACTATTTTTGAATTTTTTCTGATTTGTTGTCTGAAAGATATCTCGTGTAATCTAGCTGGGGTTTTTTTTTGCGATTTTTTTGGGGTTCAATTTCTTGTAGCAACTGTTCATCCAGATAAAGGTTTAGTTTTTATGATTAATTTGACATTTTTGCTTATCTGGGTGTTCATGGAATTGGTGCTGTTGTAAAGAAAAAAACTGGAAATTTGAGTTCTTTACATTTTGTAGGTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTG</genome_strand>
        <mrna_strand>GTCTTTCCACTTTCAATTGTTGACGAATTAAAGCAATTCCCTGTTTTCTG............................................................................................................................................................................................................................................................GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGGCCTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGCGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E548905" ref_strand="+" ref_description="SGN-E548905 [TUS-65-I2]">
      <seq>gttgaagatggaaggttcagtagtaagaagagtgattccatctgataacagttgtctttttaatgctgttggttatgtgatggaccgtgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttcttgggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaatttttctgtacagagagatgggactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33090" stop="37367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33390" g_stop="33461" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="118" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="227" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="319" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="382" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36996" g_stop="37067" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="453" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E548905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33390" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTA</genome_strand>
        <mrna_strand>GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAA-TTTTTCTGTACAGAGAGATGGGACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E304706" ref_strand="+" ref_description="SGN-E304706 [cLEX-11-F19]">
      <seq>ttgaagatggaaggttcagtagtaagaagagtgattccatctgataacagttgtctttttaatgctgttggttatgtgatggaccgtgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttcttgggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaattttttctgtacagagagatgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33091" stop="37363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33391" g_stop="33461" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="117" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="226" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="318" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="381" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36996" g_stop="37063" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="449" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E304706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33391" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGAC</genome_strand>
        <mrna_strand>TTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E347232" ref_strand="+" ref_description="SGN-E347232 [cTOF-25-J1]">
      <seq>taagaagagtgattccatctgataacagttgtctttttaatgctgttggttatgtgatggaccgtgatagaaacaaagcccctgagctaagacaggttatagctggaacagttgccagtgatccagaaaaatattctgatgcctttctggggaagtccaacaaggagtattgtgattggattcttaacccagagaaatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaattttttctgtacagagagatgggactgtaggacctgcggagaggcttgctcttaatctggttaaggaccaacaaaggaagaggagctatactgacacagccaacttcacgttgcgatgtggagtttgccaaattggggtcattggccaaaaggaagctgtagagcatgcacaagcaactggacatgtgaacttccaggaatacaaatgaaagaaacaagaaacanagcaaaacttaatcgtttacttctttgtaccggtgaaaaccaaattcatgcaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="33113" stop="37958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33413" g_stop="33461" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33575" g_stop="33620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="95" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35402" g_stop="35510" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="204" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="296" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="359" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36996" g_stop="37114" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="478" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37115" i_stop="37369" i_length="255">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37370" g_stop="37445" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="554" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37446" i_stop="37528" i_length="83">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37529" g_stop="37658" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="684" r_length="130" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E347232" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33413" e_stop="33461"/>
          <exon e_start="33575" e_stop="33620"/>
          <exon e_start="35402" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37114"/>
          <exon e_start="37370" e_stop="37445"/>
          <exon e_start="37529" e_stop="37658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGGGTAAATTCTATTCCCATTTTACTTTGTTCTTGTTCTTTAATTTGCAGTTGGAATTGGATATGGTGTGGTTCGAAATTTTGAATAAATATATTGTTGTTTCTTGTTTTATGTAGTTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAGGTTCTAGTTTTGCCTTTGAAATTACTCTGTTAAAACGTTTATTCGTGTTATGCTAGTCAAGAATGTTATATATGGATAGAATAGCTCTCTTGTTGTTATATCTTATTGATTTAACAAGTGCAGAGTAGTCTCGTAGTTGTAGTCTTTTAGCTAGTGATGGAAGGAATCCTCTTTTTATTTATTTATTAGATATTTTAGAGACTTTTCTTGAGAGGAACTGCTAGAGGTGTAGTCGAGAAATGGAAAATGTGTGCGTGTGTGAGCTTCTTGATGAAGAAGATTGTATAAAAATTAATTAGAAGATTGTATAAAAATTAATTATGCAGGTGGATTGTATTGTGAGTGTAGATGTGTTTTTTTGATTTTGCGAGAAAAAATGGGAAAAAACCAGGGTGCAAGTGAGTGGAGTGAATTTTATGTGTAGTGTTTGTGGATGAGTTAGATTAAGTAAAAGCTTGTTATGATATGTGCTGGTTCAGAACATTGAGGAATGAAGCCAGTGTGTTTTTCATTGCCTTGAGGAAATATGTTCTCTTTCATGTGGTTATAGGATAGTATGATAGTTTGTTCAGTTTAAAGGAGTAAGCTTTAGTGGATAGGACTTTCAAGGAAATGAGATGAGGTGAAGGCCAACTTCTGTGCTTAGACATCAATACGCAAAACTATTTTGTGTCTATTGAACATTTATGAATAGTCTATGCATCCCCAGGTTGGTGCATTTCTTTGAGCTTGGGCCGTGGAGAAGCATTGGTAACCACCGCTCTATCACCAGGCACTTCTGGAAGGCAGGGAGTGTGACAACGTACATGCTTCCCTTTACCCCTTCCCCCAGGATGTCTAAAGCAGCTTATCTTAAAAAGCAGAAATTGAAGGGAATAAAGACTATTTACAGTCAAGATTTAGGAATTAAAGAAAGATTATTGATCAATGATTGCTGCCCCATAACCTTATTTCTAGTTGTGGGACTTACGTAGTACATGGAACGCTTTCTATTGACCTTTTGCAAAGCCTCTATGACATGGTTTATTAAGGAGTTCTGTACTCTTCATTCAATCATCTATGCCTCAATCTGAGACTAGTAAGGTCAGCTATATAATACTCATCAACTATGAGCTAGTTAAGCCCATTTAATTCTATTAGTCAATTATATATCTTTTAAGCCAAATTAAGGGATCTCTAGAATTTGAAGTTTCTTGTATTCACATTTATCCGCAATAGTTTAGAACAACTTCCCATTAAAGACTAACATGAGTTCGATGCATTGATGTATCAAAAAAAGTATGTGTAATGCGTTCAGTACACTTTAGGATTGAAGAAGTAGTTGCTGGTGATCTCACCCATCCCTGAGATGGTTTCTCTTTTAGTTGATAAGGAAAAGTGATTTTTTTTCTGATGGATTTTGTCACTTATCAATCTCTAGAGGTGGCGAAACTCATCAAGCGTCTGACCCAGAGATAATTTTAACTTCAACCTCATGCCCAAGGGACCAAATTGCACAAGGAAAAAGGTTTCATTTAGTGAAAAGACACTGGATACTTTCTCAGACATCAATGATTGGATACGGAATCTAGGCTTATAACAATTTTGTAACAACTTATTTGCCATAGGAGAAATTAAATTCAGGAAGCTACTTTATAGAAAAGCCAACAGTTTCTTGTTATTTAGTTATAATATGTGAAATATGACTCAAGTTGATAGTTTGATATGGTTTAGTGCTTGGAATATTGCATAAAGCTCACTACTCCTCATCCATGACACTTTATACATTTCAAAATTTGAAGGTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAGGTAAGCGTTGCCCTTTTAAGCAGAAAATGACCAAGTTTGGTGTTGGGGGAGAATTTTGTAACGGCCAGGTGAACAAGTATCACGTCCTTGTTCTTATGCTGCTTCGGATTTATGGTTGGGTCAAAACATTATGTGTTCTAACTCAGAGTTGCCTTACATTTTTATAATAAAACGTATTTTGCTGTGAGGAAATGAATAGGAACTACTTACATCTACTTATCACTTTGCTGTTTATCTATTATTGCTTCATTGCAGGAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAGGTTCATATCTTGCTTCTTGTAATCATTCAGCCTACTTTCTTAAGCTTGCAACTTCGTTTGCTAAAAGTTGCATTCCTATGCAGGAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGT</genome_strand>
        <mrna_strand>TAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG.................................................................................................................TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTGGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAG...............................................................................................................................................................................................................................................................GAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAG...................................................................................GAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACANAGCAAAACTTAATCGTTTACTTCTTTGTACCGGTGAAAACCAAATTCATGCAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E543602" ref_strand="-" ref_description="SGN-E543602 [TUS-65-I2]">
      <seq>aagtccaacaaggagtattgtgattggattcttaacccagagatatggggaggggccatagagctttcaatattggctgaccactacggacgagaaattgcagcctatgatatccaaacaacgcgctgtgatctgtatggacagggaaagaactatgaggaaagagtaatgctgatttatgatggacttcattacgatgctttggctatgtcccctgctgaaggagctccggaggattttgatcaaacaattttttctgtacagagagatgggactgtaggacctgcggagaggcttgctcttaatctggttaaggaccaacaaaggaagaggagctatactgacacagccaacttcacgttgcgatgtggagtttgccaaattggggtcattggccaaaaggaagctgtagagcatgcacaagcaactggacatgtgaacttccaggaatacaaatgaaagaaacaagaaacaaagcaaaacataatcgtttacttctttgtaccggtgaaaaccaatttcatgcaactgtcaagtagatttcatttctaatcgaaaggtgtgtgatttctgttaatttgttgatgcattgttgtgctatagaaattgtgtcccattttagacagaacaaagtgaaacagagatacttaaagtgtgtattagtggaagaaatacaactttgacatgtattcgcatttcttgttgatgtatttgagacaagtactatatgctattctaatgtgtcatttgacttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="35159" stop="38183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35459" g_stop="35510" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36135" g_stop="36226" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="144" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36332" g_stop="36394" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="207" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36996" g_stop="37114" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="326" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37115" i_stop="37369" i_length="255">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37370" g_stop="37445" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="402" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37446" i_stop="37528" i_length="83">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37529" g_stop="37894" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="768" r_length="366" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E543602" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543602" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35459" e_stop="35510"/>
          <exon e_start="36135" e_stop="36226"/>
          <exon e_start="36332" e_stop="36394"/>
          <exon e_start="36996" e_stop="37114"/>
          <exon e_start="37370" e_stop="37445"/>
          <exon e_start="37529" e_stop="37894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAGGTATGTCTTATGTCGTGTTTTAAAGTTATCTTATTCTGGGATGATTTTAACTACTCGGAAACAACCTCTCTATCACTATGAGGTAGGGGTATGCTCTGGTATTACACTGGGTATGCTATTGTTGTTGCATGATTTCAACTACTGGAGTCCTGTTAGGATAAGGATAAGTGGATAACAGTCACTTCACTTGTGTCATGCTGTTGGTGTATCTCACAGATAGTTTGGCTGTATAACTTGGGGGTCAAAGATTGCAATTACTTCCATGACTTTTTTGTTAAGCCATCGGTAATAGTTAAAACTCGAGAATTACTGCTTATAATTGCTTAAAAGGAACTAACGAGTGAGACTGATATGACATTCAAGTAGCTTGGGATTGAGGTGTAATTGTTGTCGTTTGTTTTATCAGAAAAAGAAAAAGGTGCATAATCGATAAATGTTTTGTGCTGTATGCTGCTTTTATAATTTACTTTTTCCTTTTGTAAGCCAAGTCTATTTCACAGCATTATGATTAAGCTGGAAGAACTCAAGCTTCTGTTGCTTAGGAACATCCCTTTCTTATCTATTTATTGCAGTTCTTGTTATTTGTTTTGTGTTTCTTACCTTTGAAATGCTTACTCTCTTAAGGGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAGGTTAGCATTTAGCTAGTAGGATGTGTAATTAGCTATTTCTACACGTGTCATTTGACAATTCCTGATTCTTCTCAACCACCTTTATATGGCTTAACGTTAAAACAGGGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCTGTATGGTCTCTCTCTCTCTCTCTCTCTCTGCACATGCACCTTCTTGATCATTCTGTTTACATTCAGGAGGAACAAGAAGGAGGGAGATATTCAATTTTGTGAAGATTTTTAGATCTTGCGAATATTTGGACTGTAGGCACAGTTAAGGACCTAGACTTTTTCTGAAATCTTGTCAAATCAATTAATGACTTTAGAATATGATATAGGATTAGTGATCTATATCTGATACCAATGATCGTTAAAAAGGGACAGATGACTGCTTCAGTTAGCTAATCTGTTGGATCATTTTTTTAAGCCTATCTTTGTTTTGATTTTTGTCGGGTTATTTGCAAAATAAGAAGTGTATGTAATGGGTAGGTTCTCTTTATATCATCGATCTTGGGGGTTTGTGCCCTTCTCTGGTGCTATTCATAACGAATATTTGCATTTACGCATCATCTGAGATATGAAATTATTAGGTGCTGCATTGCTGGTTAGTAGTGTGAAATCATTTCGCTAATATTTTAATGAAGAATTTCCCATCTTTTGACAAAGCTTGAAGTTAGATTTCCTTTTTTAAGTCTGTACCTACTTACACCTAGTTTCATGTGACAATCAACAGATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAGGTAAGCGTTGCCCTTTTAAGCAGAAAATGACCAAGTTTGGTGTTGGGGGAGAATTTTGTAACGGCCAGGTGAACAAGTATCACGTCCTTGTTCTTATGCTGCTTCGGATTTATGGTTGGGTCAAAACATTATGTGTTCTAACTCAGAGTTGCCTTACATTTTTATAATAAAACGTATTTTGCTGTGAGGAAATGAATAGGAACTACTTACATCTACTTATCACTTTGCTGTTTATCTATTATTGCTTCATTGCAGGAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAGGTTCATATCTTGCTTCTTGTAATCATTCAGCCTACTTTCTTAAGCTTGCAACTTCGTTTGCTAAAAGTTGCATTCCTATGCAGGAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTTGAGCTTTGTATTA</genome_strand>
        <mrna_strand>AAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGATATGGGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG.........................................................................................................GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAG...............................................................................................................................................................................................................................................................GAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAG...................................................................................GAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E226725" ref_strand="-" ref_description="SGN-E226725 [cLEL-26-J14]">
      <seq>taaaacaacaaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39141" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38944" g_stop="38930" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="66" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37924" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="364" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37923" i_stop="37724" i_length="200">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37723" g_stop="37705" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="383" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E226725" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38944" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37924"/>
          <exon e_start="37723" e_stop="37705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAAC-AATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAATGCATCAACAA</genome_strand>
        <mrna_strand>TAAAACAACAAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTT........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E226842" ref_strand="-" ref_description="SGN-E226842 [cLEL-26-J14]">
      <seq>aattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39141" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38935" g_stop="38930" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="56" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37924" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="354" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37923" i_stop="37724" i_length="200">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37723" g_stop="37705" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="373" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E226842" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226842" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38935" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37924"/>
          <exon e_start="37723" e_stop="37705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAATGCATCAACAA</genome_strand>
        <mrna_strand>AATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTT........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E234983" ref_strand="-" ref_description="SGN-E234983 [cLEL-6-C10]">
      <seq>agaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39439" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39139" g_stop="39100" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="114" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="164" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38221" g_stop="37961" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="425" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37960" i_stop="37724" i_length="237">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37723" g_stop="37715" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="434" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E234983" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234983" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39139" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37961"/>
          <exon e_start="37723" e_stop="37715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAAT</genome_strand>
        <mrna_strand>AGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAAA.............................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E234695" ref_strand="-" ref_description="SGN-E234695 [cLEL-6-C10]">
      <seq>ctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39302" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39002" g_stop="38930" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="123" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37961" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="384" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37960" i_stop="37724" i_length="237">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37723" g_stop="37715" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="393" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E234695" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234695" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39002" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37961"/>
          <exon e_start="37723" e_stop="37715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAAT</genome_strand>
        <mrna_strand>CTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAAA.............................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E229704" ref_strand="-" ref_description="SGN-E229704 [cLEL-4-D9]">
      <seq>gtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39266" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38966" g_stop="38930" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="87" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37961" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="348" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37960" i_stop="37724" i_length="237">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37723" g_stop="37715" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="357" r_length="9" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E229704" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229704" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38966" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37961"/>
          <exon e_start="37723" e_stop="37715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAAT</genome_strand>
        <mrna_strand>GTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAAA.............................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327918" ref_strand="+" ref_description="SGN-E327918 [cTOC-22-O10]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="20950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37961" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="738" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37960" i_stop="37724" i_length="237">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37723" g_stop="37716" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="746" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37961"/>
          <exon e_start="37723" e_stop="37716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAA</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAAA.............................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327678" ref_strand="+" ref_description="SGN-E327678 [cTOC-20-P24]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcaaattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="20952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37963" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="736" r_length="259" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37962" i_stop="37724" i_length="239">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37723" g_stop="37716" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="744" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327678" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37963"/>
          <exon e_start="37723" e_stop="37716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGTAATACAAAGCTCAAAGTCAAATGACACATTAGAATAGCATATAGTACTTGTCTCAAATACATCAACAAGAAATGCGAATACATGTCAAAGTTGTATTTCTTCCACTAATACACACTTTAAGTATCTCTGTTTCACTTTGTTCTGTCTAAAATGGGACACAATTTCTATAGCACAACAA</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAAATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAA...............................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E236840" ref_strand="-" ref_description="SGN-E236840 [cLEL-7-M19]">
      <seq>ctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccacgtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39545" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39245" g_stop="39226" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="65" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="139" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="189" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38221" g_stop="37894" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="517" r_length="328" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E236840" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236840" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39245" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGT</genome_strand>
        <mrna_strand>CTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E221517" ref_strand="-" ref_description="SGN-E221517 [cLEL-10-E8]">
      <seq>agctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccacgtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39261" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38961" g_stop="38930" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="82" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37894" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="410" r_length="328" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E221517" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221517" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38961" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGT</genome_strand>
        <mrna_strand>AGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E221920" ref_strand="-" ref_description="SGN-E221920 [cLEL-10-E8]">
      <seq>atctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccacgtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39131" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38831" g_stop="38790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37894" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="370" r_length="328" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E221920" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221920" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38831" e_stop="38790"/>
          <exon e_start="38221" e_stop="37894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGT</genome_strand>
        <mrna_strand>ATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E237012" ref_strand="+" ref_description="SGN-E237012 [cLEL-7-M19]">
      <seq>ttttttttttttttttttaaacgtggttataaactcgatgaattcttattatggggactgaaagagcccttttttaacagaatttattcatgctgcactctgcaacaatggagattagaatctgcagcagagtatcaagagactctgaattaaagacttaaatctcctttatttaactttaatttttgaatctaaagtcatagctgccatggaagttgaagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="20949" stop="38419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37894" g_stop="38119" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E237012" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37894" e_stop="38119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAGCTACGATCAGTAAACGTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTAAACGTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E290804" ref_strand="+" ref_description="SGN-E290804 [cLET-10-O15]">
      <seq>tcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40157" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39857" g_stop="39726" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="248" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="367" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="417" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37910" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="729" r_length="312" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E290804" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39857" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTAC</genome_strand>
        <mrna_strand>TCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326862" ref_strand="+" ref_description="SGN-E326862 [cTOC-25-E10]">
      <seq>tatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaagggctctttcagtccccataataagattcatcgagtttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40190" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39890" g_stop="39726" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="281" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="326" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="400" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="450" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37911" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="759" r_length="309" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326862" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39890" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTA</genome_strand>
        <mrna_strand>TATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTT-AAAAAGGGCTCTTTCAGTCCCCATAATAAG-ATTCATCGAGTTTATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327109" ref_strand="+" ref_description="SGN-E327109 [cTOC-18-N20]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaaatctcattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagattcatcgagtttataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37914" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="784" r_length="307" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327109" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCT-AATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGT</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAAATCT-CATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAG-ATTCATCGAGTTTATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E378039" ref_strand="-" ref_description="SGN-E378039 [TUS-21-H4]">
      <seq>tattagtatatttaaaaattattaaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40196" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39896" g_stop="39726" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="288" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="333" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="407" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="457" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="763" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E378039" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378039" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39896" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGTATATTT-AAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>TATTAGTATATTTAAAAATTATTAAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E222121" ref_strand="-" ref_description="SGN-E222121 [cLEL-36-G22]">
      <seq>ggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatccatgcaccagcccgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39267" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38967" g_stop="38930" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="88" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="395" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="410"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E222121" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222121" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38967" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCC-TGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>GGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCATGCACCAGCCCGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E282345" ref_strand="+" ref_description="SGN-E282345 [cLER-18-O1]">
      <seq>taaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattggtgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39141" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38944" g_stop="38930" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="65" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="371" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E282345" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38944" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>TAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGGTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E224052" ref_strand="-" ref_description="SGN-E224052 [cLEL-19-E4]">
      <seq>gttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39139" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="356" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="371"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E224052" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224052" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E296136" ref_strand="+" ref_description="SGN-E296136 [cLET-24-N3]">
      <seq>gctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39135" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38835" g_stop="38790" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="352" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="362"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E296136" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38835" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>GCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E228733" ref_strand="-" ref_description="SGN-E228733 [cLEL-29-A20]">
      <seq>atctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagnacgttnaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctcccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39131" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38831" g_stop="38790" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="349" r_length="307" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="365"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E228733" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228733" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38831" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCT-CCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>ATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGNACGTTNAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E227278" ref_strand="-" ref_description="SGN-E227278 [cLEL-30-L9]">
      <seq>aagtcaatgcaatttatggtaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtcttttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39113" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38813" g_stop="38790" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="330" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="345"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E227278" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227278" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38813" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>AAGTCAATGCAATTTATGGTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTTTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E234958" ref_strand="-" ref_description="SGN-E234958 [cLEL-6-O15]">
      <seq>gtcaatgcaatttatgctaaatattttccagatccctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39111" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38811" g_stop="38790" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="329" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="345"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E234958" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234958" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38811" e_stop="38790"/>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGAT-CCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>GTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E216671" ref_strand="-" ref_description="SGN-E216671 [cLEL-1-B2]">
      <seq>ttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccatgataagaattcaaaaagtttacaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38530" stop="37632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38221" g_stop="37916" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="317" r_length="306" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="331"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E216671" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216671" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38221" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATGATAAGAATTCAAAAAGTTTACAACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E234862" ref_strand="-" ref_description="SGN-E234862 [cLEL-6-O15]">
      <seq>ttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaacagaattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttatacccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="38490" stop="37617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38190" g_stop="37916" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="276" polyA_stop="291"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E234862" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234862" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38190" e_stop="37916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCAC</genome_strand>
        <mrna_strand>TTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAACAGAATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATACCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E229021" ref_strand="-" ref_description="SGN-E229021 [cLEL-29-A20]">
      <seq>gctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttcccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataacccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39135" stop="37618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38835" g_stop="38790" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37918" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="351" r_length="305" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="369"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E229021" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229021" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38835" e_stop="38790"/>
          <exon e_start="38221" e_stop="37918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTT-CCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACC</genome_strand>
        <mrna_strand>GCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E552116" ref_strand="+" ref_description="SGN-E552116 [cTSB-2-O12]">
      <seq>gtggatcccccgggctgcagcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40134" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39841" g_stop="39726" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="232" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="277" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="351" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="401" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37920" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="703" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="716"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E552116" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39841" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAA</genome_strand>
        <mrna_strand>GTGGATCCCCCGGGCTGCAGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E221340" ref_strand="-" ref_description="SGN-E221340 [cLEL-22-B15]">
      <seq>ggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39267" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38967" g_stop="38930" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="88" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37920" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="390" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="406"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E221340" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38967" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAA</genome_strand>
        <mrna_strand>GGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E222150" ref_strand="-" ref_description="SGN-E222150 [cLEL-36-O24]">
      <seq>ttatgttggctgatctaggggacttccaaaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcgcgttcagcttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttccccttccatgacagctatgtctttagattcaaaaattaaagttaaataaaggacatttaagtctttaattcagagtctcttgacactctgctgcagattctaatctcccttgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcttcgagtttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39141" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38933" g_stop="38930" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="54" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="37920" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="356" r_length="302" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="371"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E222150" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222150" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38933" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAA</genome_strand>
        <mrna_strand>TTAT..........................................................................................GTTGGCTGATCTAGGGGACTTCCAAAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCGCGTTCAGCTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCCCCTTCCATGACAGCTATGTCTTTAGATTCAAAAATTAAAGTTAAATAAAGGACATTTAAGTCTTTAATTCAGAGTCTCTTGACACTCTGCTGCAGATTCTAATCTCCCTTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCTTCGAGTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328574" ref_strand="+" ref_description="SGN-E328574 [cTOC-23-D21]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttcaatagggctctttcagtccccataataagattcatcgagtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37921" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="769" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328574" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATA</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTT-CAATAGGGCTCTTTCAGTCCCCATAATAAG-ATTCATCGAGTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E228497" ref_strand="+" ref_description="SGN-E228497 [cLED-3-N3]">
      <seq>tggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40094" stop="37623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39794" g_stop="39726" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="185" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="230" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="304" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="354" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37923" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="653" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E228497" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39794" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTA</genome_strand>
        <mrna_strand>TGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E296792" ref_strand="+" ref_description="SGN-E296792 [cLET-26-G4]">
      <seq>aaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtccccataataagaattcatcgagtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39114" stop="37620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38814" g_stop="38790" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37924" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="323" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="337"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E296792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38814" e_stop="38790"/>
          <exon e_start="38221" e_stop="37924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTT</genome_strand>
        <mrna_strand>AAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241264" ref_strand="+" ref_description="SGN-E241264 [cLED-26-B19]">
      <seq>gaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctctttcagtcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39417" stop="37645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39117" g_stop="39100" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="92" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="142" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38221" g_stop="37945" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="419" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E241264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39117" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCA</genome_strand>
        <mrna_strand>GAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E229113" ref_strand="+" ref_description="SGN-E229113 [cLEL-29-A8]">
      <seq>tggggactgaaagagcccttttttaacagaatttattcatgctgcactctgcaacaatggagatttagaatctgcagcagagtatcaagagactctgaattaaagacttaaatctcctttatttaactttaatttttgaatctaaagtcatagctgcctgggaagttgaagactttaatctgtttaacacactgctatgcaatcaattttcaatttttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="37645" stop="38464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37945" g_stop="38164" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E229113" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37945" e_stop="38164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGA-TTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAA-TTTCAATTTTTGCAT</genome_strand>
        <mrna_strand>TGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCTGGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAATTTTCAATTTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326182" ref_strand="+" ref_description="SGN-E326182 [cTOC-16-M21]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaaatctcattngtgcagagtgcagcatgaaataatttctgttaaaaagggctctttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37951" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="730" r_length="271" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326182" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATG-AATAAATTCTGTTAAAAAAGGGCTCTTTCAG</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAAATCTCATTNGTGCAGAGTGCAGCATGAAATAATTTCTGTT-AAAAAGGGCTCTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328713" ref_strand="+" ref_description="SGN-E328713 [cTOC-23-K10]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaaagggctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37954" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="727" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTT</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328771" ref_strand="+" ref_description="SGN-E328771 [cTOC-23-D20]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtggtagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgttaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37962" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="730" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAG</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGGTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E229330" ref_strand="-" ref_description="SGN-E229330 [cLEL-4-D9]">
      <seq>gggaacttacagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaattctgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39126" stop="37663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38826" g_stop="38790" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38221" g_stop="37963" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="296" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="297" polyA_stop="307"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E229330" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229330" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38826" e_stop="38790"/>
          <exon e_start="38221" e_stop="37963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAA</genome_strand>
        <mrna_strand>GGGAACTTACAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E325699" ref_strand="+" ref_description="SGN-E325699 [cTOC-15-M24]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctcattgttgcagagtgcagcatgaataaattctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37968" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="723" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E325699" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTA</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCT-CATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327657" ref_strand="+" ref_description="SGN-E327657 [cTOC-20-J6]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaaatctcattngntgcagagtgcagcatgaataaattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37971" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="722" r_length="252" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327657" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCT-AATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTG</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAAATCTCATTNGNTGCAGAGTGCAGCATGAATAAATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327878" ref_strand="+" ref_description="SGN-E327878 [cTOC-22-K23]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagttatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccattgttgcagagtgcagcatgaataaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="37674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="37974" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="722" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327878" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="37974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATT</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGTTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328053" ref_strand="+" ref_description="SGN-E328053 [cTOC-22-K20]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagttatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="37700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38000" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="696" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328053" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATT</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGTTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326765" ref_strand="+" ref_description="SGN-E326765 [cTOC-25-C2]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaataaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38000" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="691" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATT</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAA-TAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327447" ref_strand="+" ref_description="SGN-E327447 [cTOC-19-H3]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38002" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="697" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCA</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232090" ref_strand="+" ref_description="SGN-E232090 [cLED-7-N23]">
      <seq>cgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacatcatttatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgctgcagattctaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40097" stop="37705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39797" g_stop="39726" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="188" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="233" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="307" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="357" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38005" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="574" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232090" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39797" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCT</genome_strand>
        <mrna_strand>CGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACATCATTTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E231687" ref_strand="+" ref_description="SGN-E231687 [cLED-4-M16]">
      <seq>cgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcacccanacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactntagattcaaaaattaaagttaaataaaggagaattaagtctttaattcagagtctcttgatactctgctgcagattctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40097" stop="37706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39797" g_stop="39726" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="188" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="233" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="307" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="357" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38006" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="573" r_length="216" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E231687" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39797" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATC</genome_strand>
        <mrna_strand>CGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCCANACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTNTAGATTCAAAAATTAAAGTTAAATAAAGGAGAATTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E321556" ref_strand="+" ref_description="SGN-E321556 [cTOB-25-G7]">
      <seq>gagtactacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaataaagttaaataaaggagatttnnagtctttattcagagtctcttgatactctgctgcagattctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40223" stop="37707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39923" g_stop="39726" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="314" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="359" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="433" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="483" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38007" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="697" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E321556" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39923" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTT-AAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAAT</genome_strand>
        <mrna_strand>GAGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAA-TAAAGTTAAATAAAGGAGATTTNNAGTCTTT-ATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E322805" ref_strand="+" ref_description="SGN-E322805 [cTOB-30-E12]">
      <seq>tttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatctgctaccagcacgttcaactttttcagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40176" stop="37719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39876" g_stop="39726" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="267" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="312" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="386" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="436" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38019" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="639" r_length="203" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E322805" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39876" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGC-ACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCT</genome_strand>
        <mrna_strand>TTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGAT-CTGCTACCAGCACGTTCAACTTTTTCAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242898" ref_strand="+" ref_description="SGN-E242898 [cLED-31-E12]">
      <seq>cgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtgcagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctacgggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcgccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagactcttgatactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40114" stop="37721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39814" g_stop="39726" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="205" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="250" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="324" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="374" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38021" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="575" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242898" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39814" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTG</genome_strand>
        <mrna_strand>CGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTGCAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTACGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCGCCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGACTCTTGATACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E320900" ref_strand="+" ref_description="SGN-E320900 [cTOB-13-C15]">
      <seq>attatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40180" stop="37722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39880" g_stop="39726" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="271" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="316" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="390" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="440" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38022" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="640" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E320900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39880" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCT</genome_strand>
        <mrna_strand>ATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E291557" ref_strand="+" ref_description="SGN-E291557 [cLET-6-G22]">
      <seq>ggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40126" stop="37724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39826" g_stop="39726" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="217" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="262" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="336" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="386" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38024" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="584" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E291557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39826" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACT</genome_strand>
        <mrna_strand>GGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E378040" ref_strand="+" ref_description="SGN-E378040 [TUS-21-H4]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="37725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="310" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="479" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38025" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="676" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E378040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATAC</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E238450" ref_strand="+" ref_description="SGN-E238450 [cLED-17-N14]">
      <seq>aaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaattcagagtctcttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39639" stop="37725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39339" g_stop="39226" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="159" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="233" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="283" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38221" g_stop="38025" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="480" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E238450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39339" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATAC</genome_strand>
        <mrna_strand>AAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E325862" ref_strand="+" ref_description="SGN-E325862 [cTOC-12-J14]">
      <seq>tcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcactgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttgaataaaggagatttaagtctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40071" stop="37742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39771" g_stop="39726" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="207" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="281" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="331" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38042" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="511" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E325862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39771" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAAT</genome_strand>
        <mrna_strand>TCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCACTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTGAATAAAGGAGATTTAAGTCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E291309" ref_strand="+" ref_description="SGN-E291309 [cLET-2-O3]">
      <seq>tcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggcgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40059" stop="37743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39759" g_stop="39726" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="150" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="195" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="269" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="319" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="497" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="509"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E291309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39759" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</genome_strand>
        <mrna_strand>TCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGCGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E294376" ref_strand="+" ref_description="SGN-E294376 [cLET-14-E13]">
      <seq>tgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaaaaaaaaaaaaaatcatccaaaaaaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39604" stop="37743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39304" g_stop="39226" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="124" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="198" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="248" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38221" g_stop="38044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="426" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="427" polyA_stop="440"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E294376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39304" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</genome_strand>
        <mrna_strand>TGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E228838" ref_strand="-" ref_description="SGN-E228838 [cLEL-29-C12]">
      <seq>cccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39595" stop="37743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39295" g_stop="39226" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="115" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="189" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="239" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38221" g_stop="38044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="417" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="434"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E228838" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228838" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39295" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</genome_strand>
        <mrna_strand>CCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E292831" ref_strand="+" ref_description="SGN-E292831 [cLET-11-A14]">
      <seq>aaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacaaattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtctttaaagnaaaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39297" stop="37743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38997" g_stop="38930" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="118" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38221" g_stop="38044" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="296" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="312"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E292831" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38997" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</genome_strand>
        <mrna_strand>AAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAAATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E228934" ref_strand="-" ref_description="SGN-E228934 [cLEL-29-C12]">
      <seq>attagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcagcttccatggcagctatgactttagattcaaaaattaaagttaaataaaggagatttaagtcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="39627" stop="37743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39327" g_stop="39226" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="147" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="221" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="271" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38221" g_stop="38046" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="447" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="467"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E228934" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228934" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39327" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTT</genome_strand>
        <mrna_strand>ATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAGCTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326781" ref_strand="+" ref_description="SGN-E326781 [cTOC-25-G22]">
      <seq>aattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagagtgttaaacagattaaagtcttcaacttccatggcagctatgactgtagattcaaaaattanagttaaatagaggagatttaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40181" stop="37747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39881" g_stop="39726" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="272" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="317" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="391" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="441" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38047" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="616" r_length="175" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326781" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39881" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCT</genome_strand>
        <mrna_strand>AATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGAGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTGTAGATTCAAAAATTANAGTTAAATAGAGGAGATTTAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E325825" ref_strand="+" ref_description="SGN-E325825 [cTOC-12-D7]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactntagattcaaaaattaaagttaaataaaggagatttaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="37748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38048" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="648" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E325825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTC</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTNTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326757" ref_strand="+" ref_description="SGN-E326757 [cTOC-25-O15]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaattaaagttaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38062" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="619" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAA</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E327075" ref_strand="+" ref_description="SGN-E327075 [cTOC-18-D6]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaaatgcaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaactttcatggcagctatgactttagaatcaaaaaattaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="419" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="469" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38067" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="624" r_length="155" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E327075" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTG-AATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTA</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTT-AAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAAATGC-AAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTTCATGGCAGCTATGACTTTAGAATCAAAAAATTAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E236570" ref_strand="+" ref_description="SGN-E236570 [cLED-13-K12]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="37776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="310" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="479" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38076" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="625" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E236570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAA</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328025" ref_strand="+" ref_description="SGN-E328025 [cTOC-22-O17]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcacaaagtcaatgcaatttatgctagatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaagaattgagattgattgcatagcagtgcgttagacagattacagtcttcaacttccatggcagctatgactttagattcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38076" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="623" r_length="146" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328025" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAA</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCACAAAGTCAATGCAATTTATGCTAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAGAATTGAGATTGATTGCATAGCAGTGCGTTAGACAGATTACAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240138" ref_strand="+" ref_description="SGN-E240138 [cLED-32-H14]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttagattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38078" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="603" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAA</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E290006" ref_strand="+" ref_description="SGN-E290006 [cLET-5-C9]">
      <seq>ggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatgactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40086" stop="37785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39786" g_stop="39726" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="177" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="222" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="296" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="346" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38085" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="483" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E290006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39786" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAG</genome_strand>
        <mrna_strand>GGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E328678" ref_strand="+" ref_description="SGN-E328678 [cTOC-23-K23]">
      <seq>ttattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttcaatggcagctatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40197" stop="37789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39897" g_stop="39726" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="288" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="333" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="407" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="457" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38089" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="590" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E328678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39897" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACT</genome_strand>
        <mrna_strand>TTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCAATGGCAGCTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E235751" ref_strand="+" ref_description="SGN-E235751 [cLED-15-C13]">
      <seq>cttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccaagccgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaacttccatggcagctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40144" stop="37791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39844" g_stop="39726" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="235" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="280" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="354" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="404" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38091" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="535" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E235751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39844" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGA</genome_strand>
        <mrna_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAAGCCGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E236593" ref_strand="+" ref_description="SGN-E236593 [cLED-13-F15]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtcttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="37808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="310" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="479" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38108" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="593" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E236593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAAC</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241531" ref_strand="+" ref_description="SGN-E241531 [cLED-28-F20]">
      <seq>ttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaacagattaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40143" stop="37813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39843" g_stop="39726" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="234" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="279" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="353" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="403" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38113" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="512" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E241531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39843" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCT</genome_strand>
        <mrna_strand>TTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240432" ref_strand="+" ref_description="SGN-E240432 [cLED-25-L10]">
      <seq>cttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcanccacacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcatagcagtgtgttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40144" stop="37825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39844" g_stop="39726" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="235" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="280" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="354" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="404" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38125" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="501" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240432" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39844" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAAC</genome_strand>
        <mrna_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCANCCACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E236332" ref_strand="+" ref_description="SGN-E236332 [cLED-13-A17]">
      <seq>cgatggccattggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattttgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgtcatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctttgaatgcaaaaattgaaattgattgcttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40097" stop="37838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39797" g_stop="39726" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="188" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="233" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="307" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="357" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38138" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E236332" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39797" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAG</genome_strand>
        <mrna_strand>CGATGGCCATTGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTTTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGTCATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTTTGAATGCAAAAATTGAAATTGATTGCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326305" ref_strand="+" ref_description="SGN-E326305 [cTOC-14-G8]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccaagccgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="37840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38140" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="556" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326305" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCAT</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAAGCCGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E323469" ref_strand="+" ref_description="SGN-E323469 [cTOC-7-E5]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccaacacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="37844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="420" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="470" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38144" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="548" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E323469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATT</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E293233" ref_strand="+" ref_description="SGN-E293233 [cLET-12-N19]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctgggtctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38144" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="537" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E293233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATT</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGGTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E231639" ref_strand="+" ref_description="SGN-E231639 [cLED-4-K21]">
      <seq>cactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcacccacacgttcaacttttcaagcagcaggattacctctgaatgcaaaaattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40215" stop="37849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39915" g_stop="39726" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="306" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="351" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="425" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="475" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38149" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="548" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E231639" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39915" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAAT</genome_strand>
        <mrna_strand>CACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCCACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E233355" ref_strand="+" ref_description="SGN-E233355 [cLED-9-O23]">
      <seq>cttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccaacacgttcaacttttcaagcagcaggattacctctgaatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40144" stop="37856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39844" g_stop="39726" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="235" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="280" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="354" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="404" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38156" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="470" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E233355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39844" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAA</genome_strand>
        <mrna_strand>CTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241554" ref_strand="+" ref_description="SGN-E241554 [cLED-28-L24]">
      <seq>aattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgttcaacttttcaagcagcaagattacctctgaatgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40199" stop="37857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39899" g_stop="39726" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="290" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="335" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="409" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="459" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38157" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="524" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E241554" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39899" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAA</genome_strand>
        <mrna_strand>AATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAAGATTACCTCTGAATGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E233765" ref_strand="+" ref_description="SGN-E233765 [cLED-14-E16]">
      <seq>tcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcaccaacacgttcaacttttcaagcagcaggattacctctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40209" stop="37861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="39726" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="300" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="345" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="419" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="469" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38161" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="530" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E233765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGC</genome_strand>
        <mrna_strand>TCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232804" ref_strand="+" ref_description="SGN-E232804 [cLED-8-N14]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcatccacacgttcaacttttcaagcagcaggattacctctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38162" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="537" r_length="60" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232804" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATG</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCATCCACACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E325390" ref_strand="+" ref_description="SGN-E325390 [cTOC-1-M9]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttncagatcctgcaccagcacgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38194" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="505" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E325390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTTC</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTNCAGATCCTGCACCAGCACGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241530" ref_strand="+" ref_description="SGN-E241530 [cLED-28-F8]">
      <seq>ttttgtatgccggacatggcttcaaacgccgggcacaaccatactgcgatgggcatcggaattggacgcgtgtcaattgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacatataaagcaccacctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctgggtctgtaggtcttattcctgagactggagaacttatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattcttgagctggtaaaacaacaattatgttggctgatctaggggactttcacaaagtcaatgcaatttatgctaaatattttccagatcctgcaccagcacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40143" stop="37895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39843" g_stop="39726" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="234" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="279" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="353" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="403" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38195" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="430" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E241530" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39843" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCACCAGCACGTT</genome_strand>
        <mrna_strand>TTTTGTATGCCGGACATGGCTTCAAACGCCGGGCACAACCATACTGCGATGGGCATCGGAATTGGACGCGTGTCAATTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACATATAAAGCACCACCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGGTCTGTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTTATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTTGAGCTGGTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCACAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCACCAGCACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326478" ref_strand="+" ref_description="SGN-E326478 [cTOC-14-P20]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="37904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="477" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38204" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="495" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCAC</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242722" ref_strand="+" ref_description="SGN-E242722 [cLED-31-I15]">
      <seq>tcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattttccagatcctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40157" stop="37905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39857" g_stop="39726" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="248" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="367" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="417" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38221" g_stop="38205" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="434" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242722" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39857" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
          <exon e_start="38221" e_stop="38205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAATGTGAGTACAACTACCTTTCATAATATTATTAGTACTGATAATTAAGTGTGATTAGGTCAAATTCGAAATTATGAAAAATTAACCTAAAACATAGGTTACCATTTCATACCAAAGTCAAGATCTGAATATGGGTATCGAAAATTGAATGATTATTTGTATTAAGTCTTCAATTATAACTTAAAAGAAAAAAGAGTCATAATATTATGATCGCAATTATCAGTGCCTTATTTAGTTTAGGAATTTAGGGACTTGTCTTTCAAGGAATTGAGATGATTGATCTTCGTTTTAAAAAAAAAAAAACATATCCAATGTAATTCCACGAATAGGATATGGAGTGGGTTGAACGTACGCAGACCTTACCTCTATCTCGTCTGTTTTCAAAGGATTTTCGACAAATTCACTATCGTAAACAACAACATACTCTGATAAGTATGGTCTAAAAAATATAGTGTATGCAAATCTACCTTTACCTACCGAAGGTTGAGAGATTATCTTCGAAAGACCCTCGATTCAAATAAAGCATATTACTATTATTATGTACTAACATGGATATGTATCAATGTTGCAGATTTTCCAGATCCTGCA</genome_strand>
        <mrna_strand>TCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCAGATCCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232821" ref_strand="+" ref_description="SGN-E232821 [cLED-8-C9]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatntatgctaaatattttccagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="310" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="479" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATNTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E326304" ref_strand="+" ref_description="SGN-E326304 [cTOC-14-G6]">
      <seq>actattcagtaagtgaatcattcgtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtgaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggacgatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatggtggctgatctaggggactttcataaagtcaatgcaatttatgctaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E326304" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATCATTCGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGACGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GGTGGCTGATCTAGGGGACTTTCATAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240368" ref_strand="+" ref_description="SGN-E240368 [cLED-25-M6]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggttaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggatctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgtcggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="474" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGATCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTCGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232816" ref_strand="+" ref_description="SGN-E232816 [cLED-8-A21]">
      <seq>tattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40212" stop="38487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39912" g_stop="39726" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="303" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="348" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="472" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39912" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>TATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242789" ref_strand="+" ref_description="SGN-E242789 [cLED-31-F3]">
      <seq>gtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40206" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39906" g_stop="39726" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="297" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="342" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="416" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="466" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39906" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>GTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240611" ref_strand="+" ref_description="SGN-E240611 [cLED-21-N3]">
      <seq>ccggccatggttgcaaacgccgggcacaaccgtactccgatggccannnaaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaaagctggcggggttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40134" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39834" g_stop="39726" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="225" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="270" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="345" r_length="75" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="395" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240611" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39834" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTT-AAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>CCGGCCATGGTTGCAAACGCCGGGCACAACCGTACTCCGATGGCCANNNAAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAAGCTGGCGGGGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E244777" ref_strand="+" ref_description="SGN-E244777 [cLED-38-F12]">
      <seq>aaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtgaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctgggtctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgctaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40120" stop="38487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39820" g_stop="39726" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="211" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="256" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="330" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E244777" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39820" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>AAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGGTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240407" ref_strand="+" ref_description="SGN-E240407 [cLED-25-N1]">
      <seq>attggacgcgtgtcaggtgctaattcgcgcgttcctttcgtttgcttagccaggaccggttaaaaggaggaaattagtacagataaggcaccagctgcagcgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggctctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaataatgttggctgatctaggggactttgagaaagtcaatgcaatttatgctaaatattttgcagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40083" stop="38488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39783" g_stop="39726" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="174" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="219" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="293" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38790" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="343" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240407" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39783" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT</genome_strand>
        <mrna_strand>ATTGGACGCGTGTCAGGTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGGACCG................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGCGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGCTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATAAT..........................................................................................GTTGGCTGATCTAGGGGACTTTGAGAAAGTCAATGCAATTTATGCTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240788" ref_strand="+" ref_description="SGN-E240788 [cLED-24-M20]">
      <seq>cactattcagtaagggaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtcaatgcaatttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40215" stop="38495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39915" g_stop="39726" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="306" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="351" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="425" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38795" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="470" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240788" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39915" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGC</genome_strand>
        <mrna_strand>CACTATTCAGTAAGGGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E294768" ref_strand="+" ref_description="SGN-E294768 [cLET-17-B23]">
      <seq>taagtgaattattagtatatgggaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactttcagaaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40205" stop="38508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39905" g_stop="39726" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="296" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="341" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="415" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38808" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="447" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E294768" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39905" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTTTCAGAAAGTCA</genome_strand>
        <mrna_strand>TAAGTGAATTATTAGTATATGGGAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTTTCAGAAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E243507" ref_strand="+" ref_description="SGN-E243507 [cLED-34-F4]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="38519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="310" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="355" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="429" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38819" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="450" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E243507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGACTT</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E294386" ref_strand="+" ref_description="SGN-E294386 [cLET-14-K13]">
      <seq>tcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatctaggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40209" stop="38521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39909" g_stop="39726" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="300" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="345" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="419" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38821" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="438" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E294386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39909" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCTAGGGGAC</genome_strand>
        <mrna_strand>TCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCTAGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E237719" ref_strand="+" ref_description="SGN-E237719 [cLED-19-B6]">
      <seq>cactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatgttggctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40215" stop="38625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39915" g_stop="39726" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="306" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="351" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="425" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38828" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="437" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E237719" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39915" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATCT</genome_strand>
        <mrna_strand>CACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT..........................................................................................GTTGGCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E314877" ref_strand="+" ref_description="SGN-E314877 [cTOA-31-G7]">
      <seq>tatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaacaacaattatgttggctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40190" stop="38625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39890" g_stop="39726" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="281" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="326" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="399" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38839" g_stop="38829" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="410" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E314877" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39890" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
          <exon e_start="38839" e_stop="38829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTATGATACATAATTAATTTTATTTGTGTTTCCTTATAATATAGTTAATTTTGATTATTGATGTTGAATAATAATATTATTAACTTACAGGTTGGCTGATC</genome_strand>
        <mrna_strand>TATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTT-AAACAACAATTAT..........................................................................................GTTGGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E324660" ref_strand="+" ref_description="SGN-E324660 [cTOC-9-H19]">
      <seq>tacactattcagtaagtgaattattagtatagttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaagctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatacttaaagctggcggtgttagctattctgcagctgttaaaacaacaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="38629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="353" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38930" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="427" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E324660" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATAGTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAAGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232870" ref_strand="+" ref_description="SGN-E232870 [cLED-8-G10]">
      <seq>ttcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattggggagatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40210" stop="38677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39910" g_stop="39726" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="346" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38977" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="373" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39910" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGGGGAGATACTT</genome_strand>
        <mrna_strand>TTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGGGGAGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E325239" ref_strand="+" ref_description="SGN-E325239 [cTOC-1-C22]">
      <seq>actattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccagctgcagtgggcccatattctcaaggaattaaggctaataatttcatttatgtatctggttctctaggtcttattcctgagactggagaactcatatcagacaatgtggaggatcaaacagaacaggctctgaaaaatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40214" stop="38687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39914" g_stop="39726" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39226" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="305" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39144" g_stop="39100" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39003" g_stop="38987" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="367" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E325239" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39914" e_stop="39726"/>
          <exon e_start="39341" e_stop="39226"/>
          <exon e_start="39144" e_stop="39100"/>
          <exon e_start="39003" e_stop="38987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAGGTTAGTGATAATTAATCATTTTTAAATCCTTAATTAGATTGGTTAATATTTTTATAATTATTTTTTTGTGATTGAATGTAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGTTTTTGAATAATCAATCTTACGATTTTTGTTTTAATTTATATGATACTGTTCGACGGAACACAAAATATCTTGTGTTTAATAATGATTTTTTCAGGCTCTGAAAAATATTGG</genome_strand>
        <mrna_strand>ACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG.................................................................................ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG................................................................................................GCTCTGAAAAATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240685" ref_strand="+" ref_description="SGN-E240685 [cLED-21-H15]">
      <seq>gtaagtgaattattagtatatttaaaattnnaaaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgaactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggttaaaaggaggaaattagtacagattaggcaccagctgcagtgggcccatattcttaaggaattaaggctaataatttcaatttatgtatctggttctctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40206" stop="38940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39906" g_stop="39726" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39240" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="284" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240685" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39906" e_stop="39726"/>
          <exon e_start="39341" e_stop="39240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTC-ATTTATGTATCTGGTTCTCTAG</genome_strand>
        <mrna_strand>GTAAGTGAATTATTAGTATATTTAAAATTNNAAAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGAACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGAGGAAATTAGTACAGATTAGGCACCAGCTGCAGTGGGCCCATATTCTTAAGGAATTAAGGCTAATAATTTCAATTTATGTATCTGGTTCTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E232854" ref_strand="+" ref_description="SGN-E232854 [cLED-8-O7]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccggcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcatttgcttattcgcgcgttcctttcgtttgcttagccagtaccggtgaaaaggaggaaatttgtgcagataaggcaccaactacaatgggcccatattctcaaggaattaatgctaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="38967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39267" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="267" r_length="75" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E232854" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATA</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGGCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCATTTGCTTATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAAGGAGGAAATTTGTGCAGATAAGGCACCAACTACAATGGGCCCATATTCTCAAGGAATTAATGCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E240010" ref_strand="+" ref_description="SGN-E240010 [cLED-29-J18]">
      <seq>actacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccagtaccggtaaaaaggaggaaattagtacagataaggcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40219" stop="39006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39919" g_stop="39726" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39306" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="230" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E240010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39919" e_stop="39726"/>
          <exon e_start="39341" e_stop="39306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAG</genome_strand>
        <mrna_strand>ACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E243615" ref_strand="+" ref_description="SGN-E243615 [cLED-34-O22]">
      <seq>tacactattcagtaagtgaattattagtatatttaaaattatttaaaatggcgttcgccgtcgcaccgggaagcttttgtatgccggccatggctgcaaacgccgggcacaaccgtactccgatggccatcggaattggacgcgtgtcagttgctaattcgcgcgttcctttcgtttgcttagccaggaccaggaaaaaggaggaaattagtacagataaggcaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="40217" stop="39006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39917" g_stop="39726" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39341" g_stop="39306" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="228" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E243615" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39917" e_stop="39726"/>
          <exon e_start="39341" e_stop="39306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCGGTTGACATCTCATTCCTTTGTTTTATTATTTATTACTCGTTTCGTTCACTTTTACATGTTATATAATACATTCTCGATATGAAATATGACATAGCAACTGACCTCAAACTCTAGTACGAACATCAATTTCTCAATAAAAATCGAGAGAAACGTTCAAAACACCACTAAACTTTTCGAGAATTTAAGAGTATATTTCAGTGATATTGCTAAATCAGGAGTGTATTTAGCTTTAATTAGTCAAATAAAGCAATATTTTTAAAACCGTTAATTATTCAAAAATGAAATTAATAGTGTCAAATTTAATGGTGTTTTTGATTATTCTCACCTAACAAAAATAAAATATCATTTACTTTGTCTAAAGTTTTTGTTATGATATTTTTATAGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAG</genome_strand>
        <mrna_strand>TACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGGACCA................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAAGGAGGAAATTAGTACAGATAAGGCACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E705832" ref_strand="+" ref_description="SGN-E705832 [FA28BA11]">
      <seq>gaagaatggtgggagtttgaggtgaaaaaagatgattccaatccacatattgcgttgctgcctttgcaccctgacctccgtgccaagtttaatgaaactgctgcttgggaatatgcaaaaagcatggcaggcatgccttatggttaccacaacttaatatttagctggatagacacaattgatggaaattacccctcacccttggatgctaatctggttgcttctgtcatgactgtttggaaccaccttcagcctgcatatgctgcgaacatgtggaatgaagccttgaacaagcgactcggaactaagaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattcttgagatgtacaaggaagcagggctatttggtgaatttgcaagctcaattcaggttacagaattcacgattaaagatgcttactctctcaagtttttcgagaacaattcaagccggttgccaaagtggtgcaatgcagatgataatgtgagccttcctttctgtcaaattcgaggagagtaccggatggaactacctgaatacaatagtatagatccgtacccccatatgaatgaaagatgcccatctatgcctccgaaatatttcagaccacaaagttgttgacaacggctttcctatcatcctcgtaatctcagaggttagaagcatatagtttttcactcatcagttctcaggttgtatacttgtaatacaatatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="47316" stop="43840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47016" g_stop="46801" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45912" g_stop="45820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="309" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45550" g_stop="45350" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="510" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44452" g_stop="44140" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="823" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E705832" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47016" e_stop="46801"/>
          <exon e_start="45912" e_stop="45820"/>
          <exon e_start="45550" e_stop="45350"/>
          <exon e_start="44452" e_stop="44140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTGGTAATGCATATTATTTTACGGTACAGTCTTGCCAATTTTGTGCTTACAGCATTATATGAAGCTGCTTGCTTTCATACGGTCCTCTACTTCCTGATTCCTCTGGTTTGTGACTATACTCAGCTGTTCTTTGCTGGATTATGTCCTCACAAATAAACAAAATAATTACTAATAGAGGGTAACATAGACCTCAGCATATTTAGTTGCTCTGCTAGTGAAATAATATTGTTGGACATGAAGTAAAATTGGGTAAACGCATGCATTTCACACACTGGTTTCATGTATCAAACAGTATCAAAATTTCCATAAGGGTAATATCCATTTGAATTTTGACTTGATTTTATCATCAGTTTCTTCTCACAGAGCTTCATTTCACTGCTATTAACTATCTATAATGAGTCTAGTGTTGCATAGAACTCCACAAAGTATGCATGTGAAACTTAAGCAGTAAATAGATGATCGGTTAATATTTCGTGTCTCGTGAGAGCTAAAATAGTATTTTGGTGTAAGAAACTTGAAGCACCATAGAGTCGTGAATGAGCTTGAAATTACTCTTTGTGATATGAGATAGGCAGTTTGAATCAGAAATTAGGAGGATGAAGGGTGAGGAGTGGGAAGAGACGATAACGACATTAAGCAAGTAGAAATGCCAGGCGTTATAGATAAAGTGGACCATGTGGCACTTGGTTTTTGTATGTTCAATAATTGCTACTGTATTCCTGCAAATTGGAAGTGGCAGAGTGGCCTTGGTACCACGCTGCACTGAGATTCAGCCATTAGTCGCTCTCCTATTCATATTTTTTTTAAAAAAATAAAAAGATTCCTGCCAATTAAAAATTAACGTGTTACTTTATAAAATTGTTGCTGATGTTTAAGTGATGTGTGGTGCAGGTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAGGTTATGTTTTTGTATAATCACATTCATGAGATGCTTCTGTTTTTTGAGATAAAAACGGTGGATAATACACTATTTAAGCAGCTGATTGAGTAACTAATTTAAATATCAGAATACTGTATTTACAGAGATTGATGGCATAAAGCCATTGTTATACTGAAAATATACTGTGCTTTGTGAACTCTCATATATCTCAAGCGAAACTAAGTTAGTGTAGACCTCTATGACTGACTTGACATATACTACATGCTGATCTATATTGTTCCATGCAGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACGGTGAGTTGGTTTCCAGGACATTTGCATGATCTGTACTTAGATGAATCTAAAACTGCTTTTCCTTTTCTCTTGGTTGCCTTTTTGTGGATGGCGGGTGTTCTTTTTGTTGGGGGTGGGGAGTTTCAAATGTTTGTATATGTAGTGAGGTATCTTGCACTCGTTCTTCCTATTATTCTTCACATTCCTACTAAATACTCCCGTTGTCCCAATTTATGTGACACTTTCCTATATAGTCAATCCCAAGATGAATGACATATTTCCTTATGTGGCAAATGTTTATTGATACTATTTTACTCATGTTGGGTCCCACTTATTTGGGAAAATGTCGACAGAAGTGTATTCGTCTATTTAAAAATTCATTTATTTTAGGGGTATTTTGAACATTGCAAAGTCTTTCCAGTATTTCTTAAACTCTGTATCCATTCAAACTACATCACGTAAATTGGGATGGAGGGAGTACATGTTTTCAGCAATCCTTGCTACAATTCTGTATTAGTTCCAAATAAGCTGGTGTACGCATTGTTTGGGTTGTCTAAAGTTCAAACATTGTGTCCATTGTCCACTTCCCTAAAATAGGAAGTTTTTTACTGTACTCTTGCATACGTTTCAGTATCTTAGTGCCAAAAAATGTGGAAGTTAGGAACCAAATTTTAAACCAGAAGTATTACAATTCTTGGAAAGTTATCCAATCCTCTATCTTAATATTGCTCATGTTTGTGAAACTATTGCATCATTCTTTTATCATTCAGAAAAAAGAAAATTACAATTCTTGCACTACTTGTTTGCTGCTGACCCTGAGGTCTAATGGGTCATCTAATTGAAAAGCACATGGAAGTATCATGTTGGATTCAACTTTCTGGAGTTCGAAAAGTGACATATTTATTGCTGGGATTGCAGATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCT</genome_strand>
        <mrna_strand>GAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG.............................................................................................................................................................................................................................................................................AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAATACAATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E337659" ref_strand="+" ref_description="SGN-E337659 [cTOE-17-B17]">
      <seq>agaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattcttgagatgtacaaggaagcagggctatttggtgaatttgcaagctcaattcaggttacagaattcacgattaaagatgcttactctctcaagtttttcgagaacaattcaagccggttgccaaagtggtgcaatgcagatgataatgtgagccttcctttctgtcaaattcgaggagagtaccggatggaactacctgaatacaatagtatagatccgtacccccatatgaatgaaagatgcccatctatgcctccgaaatatttcagaccacaaagttgttgacaaccgctttcctatcatcctcgtaatctcagaggttagaagcatataggttttcactcatcagttctcagggtgtatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="45852" stop="43857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45552" g_stop="45350" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44452" g_stop="44157" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="499" r_length="296" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E337659" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45552" e_stop="45350"/>
          <exon e_start="44452" e_stop="44157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACGGTGAGTTGGTTTCCAGGACATTTGCATGATCTGTACTTAGATGAATCTAAAACTGCTTTTCCTTTTCTCTTGGTTGCCTTTTTGTGGATGGCGGGTGTTCTTTTTGTTGGGGGTGGGGAGTTTCAAATGTTTGTATATGTAGTGAGGTATCTTGCACTCGTTCTTCCTATTATTCTTCACATTCCTACTAAATACTCCCGTTGTCCCAATTTATGTGACACTTTCCTATATAGTCAATCCCAAGATGAATGACATATTTCCTTATGTGGCAAATGTTTATTGATACTATTTTACTCATGTTGGGTCCCACTTATTTGGGAAAATGTCGACAGAAGTGTATTCGTCTATTTAAAAATTCATTTATTTTAGGGGTATTTTGAACATTGCAAAGTCTTTCCAGTATTTCTTAAACTCTGTATCCATTCAAACTACATCACGTAAATTGGGATGGAGGGAGTACATGTTTTCAGCAATCCTTGCTACAATTCTGTATTAGTTCCAAATAAGCTGGTGTACGCATTGTTTGGGTTGTCTAAAGTTCAAACATTGTGTCCATTGTCCACTTCCCTAAAATAGGAAGTTTTTTACTGTACTCTTGCATACGTTTCAGTATCTTAGTGCCAAAAAATGTGGAAGTTAGGAACCAAATTTTAAACCAGAAGTATTACAATTCTTGGAAAGTTATCCAATCCTCTATCTTAATATTGCTCATGTTTGTGAAACTATTGCATCATTCTTTTATCATTCAGAAAAAAGAAAATTACAATTCTTGCACTACTTGTTTGCTGCTGACCCTGAGGTCTAATGGGTCATCTAATTGAAAAGCACATGGAAGTATCATGTTGGATTCAACTTTCTGGAGTTCGAAAAGTGACATATTTATTGCTGGGATTGCAGATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATAC</genome_strand>
        <mrna_strand>AGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACCGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGGTTTTCACTCATCAGTTCTCAGGGTGTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E697962" ref_strand="+" ref_description="SGN-E697962 [FA04DD01]">
      <seq>cggggagaagatgttattgctatattgccttgggaagaatggtgggagtttgaggtgaaaaaagatgattccaatccacatattgcgttgctgcctttgcaccctgacctccgtgccaagtttaatgaaactgctgcttgggaatatgcaaaaagcatggcaggcatgccttatggttaccacaacttaatatttagctggatagacacaattgatggaaattacccctcacccttggatgctaatctggttgcttctgtcatgactgtttggaaccaccttcagcctgcatatgctgcgaacatgtggaatgaagccttgaacaagcgactcggaactaagaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattcttgagatgtacaaggaagcagggctatttggtgaatttgcaagctcaattcaggttacagaattcacgattaaagatgcttactctctcaagtttttcgagaacaattcaagccggttgccaaagtggtgcaatgcagatgataatgtgagccttcctttctgtcaaattcgaggagagtaccggatggaactacctgaatacaatagtatagatccgtacccccatatgaatgaaagatgcccatctatgcctcccaaatatttcaaaccacaaagttgttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="47349" stop="43935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47049" g_stop="46801" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45912" g_stop="45820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45550" g_stop="45350" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="543" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44452" g_stop="44235" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="761" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E697962" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47049" e_stop="46801"/>
          <exon e_start="45912" e_stop="45820"/>
          <exon e_start="45550" e_stop="45350"/>
          <exon e_start="44452" e_stop="44235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTGGTAATGCATATTATTTTACGGTACAGTCTTGCCAATTTTGTGCTTACAGCATTATATGAAGCTGCTTGCTTTCATACGGTCCTCTACTTCCTGATTCCTCTGGTTTGTGACTATACTCAGCTGTTCTTTGCTGGATTATGTCCTCACAAATAAACAAAATAATTACTAATAGAGGGTAACATAGACCTCAGCATATTTAGTTGCTCTGCTAGTGAAATAATATTGTTGGACATGAAGTAAAATTGGGTAAACGCATGCATTTCACACACTGGTTTCATGTATCAAACAGTATCAAAATTTCCATAAGGGTAATATCCATTTGAATTTTGACTTGATTTTATCATCAGTTTCTTCTCACAGAGCTTCATTTCACTGCTATTAACTATCTATAATGAGTCTAGTGTTGCATAGAACTCCACAAAGTATGCATGTGAAACTTAAGCAGTAAATAGATGATCGGTTAATATTTCGTGTCTCGTGAGAGCTAAAATAGTATTTTGGTGTAAGAAACTTGAAGCACCATAGAGTCGTGAATGAGCTTGAAATTACTCTTTGTGATATGAGATAGGCAGTTTGAATCAGAAATTAGGAGGATGAAGGGTGAGGAGTGGGAAGAGACGATAACGACATTAAGCAAGTAGAAATGCCAGGCGTTATAGATAAAGTGGACCATGTGGCACTTGGTTTTTGTATGTTCAATAATTGCTACTGTATTCCTGCAAATTGGAAGTGGCAGAGTGGCCTTGGTACCACGCTGCACTGAGATTCAGCCATTAGTCGCTCTCCTATTCATATTTTTTTTAAAAAAATAAAAAGATTCCTGCCAATTAAAAATTAACGTGTTACTTTATAAAATTGTTGCTGATGTTTAAGTGATGTGTGGTGCAGGTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAGGTTATGTTTTTGTATAATCACATTCATGAGATGCTTCTGTTTTTTGAGATAAAAACGGTGGATAATACACTATTTAAGCAGCTGATTGAGTAACTAATTTAAATATCAGAATACTGTATTTACAGAGATTGATGGCATAAAGCCATTGTTATACTGAAAATATACTGTGCTTTGTGAACTCTCATATATCTCAAGCGAAACTAAGTTAGTGTAGACCTCTATGACTGACTTGACATATACTACATGCTGATCTATATTGTTCCATGCAGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACGGTGAGTTGGTTTCCAGGACATTTGCATGATCTGTACTTAGATGAATCTAAAACTGCTTTTCCTTTTCTCTTGGTTGCCTTTTTGTGGATGGCGGGTGTTCTTTTTGTTGGGGGTGGGGAGTTTCAAATGTTTGTATATGTAGTGAGGTATCTTGCACTCGTTCTTCCTATTATTCTTCACATTCCTACTAAATACTCCCGTTGTCCCAATTTATGTGACACTTTCCTATATAGTCAATCCCAAGATGAATGACATATTTCCTTATGTGGCAAATGTTTATTGATACTATTTTACTCATGTTGGGTCCCACTTATTTGGGAAAATGTCGACAGAAGTGTATTCGTCTATTTAAAAATTCATTTATTTTAGGGGTATTTTGAACATTGCAAAGTCTTTCCAGTATTTCTTAAACTCTGTATCCATTCAAACTACATCACGTAAATTGGGATGGAGGGAGTACATGTTTTCAGCAATCCTTGCTACAATTCTGTATTAGTTCCAAATAAGCTGGTGTACGCATTGTTTGGGTTGTCTAAAGTTCAAACATTGTGTCCATTGTCCACTTCCCTAAAATAGGAAGTTTTTTACTGTACTCTTGCATACGTTTCAGTATCTTAGTGCCAAAAAATGTGGAAGTTAGGAACCAAATTTTAAACCAGAAGTATTACAATTCTTGGAAAGTTATCCAATCCTCTATCTTAATATTGCTCATGTTTGTGAAACTATTGCATCATTCTTTTATCATTCAGAAAAAAGAAAATTACAATTCTTGCACTACTTGTTTGCTGCTGACCCTGAGGTCTAATGGGTCATCTAATTGAAAAGCACATGGAAGTATCATGTTGGATTCAACTTTCTGGAGTTCGAAAAGTGACATATTTATTGCTGGGATTGCAGATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACA</genome_strand>
        <mrna_strand>CGGGGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG.............................................................................................................................................................................................................................................................................AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCCAAATATTTCAAACCACAAAGTTGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E212423" ref_strand="+" ref_description="SGN-E212423 [cLEC-74-N21]">
      <seq>aaaactatgggttggcgaatctggaaatgagaatgataagggagaagatgttattgctatattgccttgggaagaatggtgggagtttgaggtgaaaaaagatgattccaatccacatattgcgttgctgcctttgcaccctgacctccgtgccaagtttaatgaaactgctgcttgggaatatgcaaaaagcatggcaggcatgccttatggttaccacaacttaatatttagctggatagacacaattgatggaaattacccctcacccttggatgctaatctggttgcttctgtcatgactgtttggaaccaccttcagcctgcatatgctgcgaacatgtggaatgaagccttgaacaagcgactcggaactaagaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattcttgagatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="48275" stop="45108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47975" g_stop="47936" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47935" i_stop="47047" i_length="889">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47046" g_stop="46801" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="286" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45912" g_stop="45820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="379" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45550" g_stop="45408" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="522" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E212423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47975" e_stop="47936"/>
          <exon e_start="47046" e_stop="46801"/>
          <exon e_start="45912" e_stop="45820"/>
          <exon e_start="45550" e_stop="45408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAGGTAGAGTCCTAAACTATTATGTTTTCACATTATGTTATTATTTGGTGTTTACTCTTTCTTATATTGGGGAGCAAGGGCAATATCTGCTACACAATAAAGAAATTGAAGATTAGAAGGAGAATTGTGATAGAGAGAATATTATCTCATCTCTTTTCATACGAACGGCAATGTCTGCTACGGAATAGAGAAATTGAAGATTAGAAAGAGAATTGTGATAGAGAATATTATCTCATCTCTTTTCGTACTTTCTTGTTCATGTTCCTTAAAAACTTCAAGATTTATGTTTAGGGAATTCTGGATTTTTGACAAAGTAATAAGGAGCATTGATAGCGAATCAAACTTTTAGGGAATAAAGGGCTCTATCTCAAATGAATAAAAAAGAAAGAGATAAAAGTGATACACGTTGGAACAATTAATTTAAGGGATTAAAGTGACATTCAAATCAGCAAACTTTAGGAAAAAAATATCTCAAGTTTGTGATTGTGGTCTCGCAAGCCTTAAGCGACACTTTTTGTGGCGTATACAGCTATAGATATCAGTATGATTATTACAAATTTTTTGATAAGGCTATGAATATTACAACGTTGACTTCAAATATCACGTTGTATGAGTATCATATTAAAAGGTATGATCCTCATTCAACAGTTGCATAAACTTAAAGCGCAACTAACTAGATTGCAACTTGTGGACATGCAATAGACACATATCCAACGCATTAACAAATAGAAAGGGAGGTCTGTTTGCTGTGGTTCTGGGTATTTGACTCGGCCCAGGCACCTTGGGGGAGGTTGAAGATTAAGAAAATTTCTATGCATGAATGACCATATATTTGATAACGAAATCTCTATATCATATTTGCACCAATTTTATTCTTCACATTTCCTTTCAGGGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTGGTAATGCATATTATTTTACGGTACAGTCTTGCCAATTTTGTGCTTACAGCATTATATGAAGCTGCTTGCTTTCATACGGTCCTCTACTTCCTGATTCCTCTGGTTTGTGACTATACTCAGCTGTTCTTTGCTGGATTATGTCCTCACAAATAAACAAAATAATTACTAATAGAGGGTAACATAGACCTCAGCATATTTAGTTGCTCTGCTAGTGAAATAATATTGTTGGACATGAAGTAAAATTGGGTAAACGCATGCATTTCACACACTGGTTTCATGTATCAAACAGTATCAAAATTTCCATAAGGGTAATATCCATTTGAATTTTGACTTGATTTTATCATCAGTTTCTTCTCACAGAGCTTCATTTCACTGCTATTAACTATCTATAATGAGTCTAGTGTTGCATAGAACTCCACAAAGTATGCATGTGAAACTTAAGCAGTAAATAGATGATCGGTTAATATTTCGTGTCTCGTGAGAGCTAAAATAGTATTTTGGTGTAAGAAACTTGAAGCACCATAGAGTCGTGAATGAGCTTGAAATTACTCTTTGTGATATGAGATAGGCAGTTTGAATCAGAAATTAGGAGGATGAAGGGTGAGGAGTGGGAAGAGACGATAACGACATTAAGCAAGTAGAAATGCCAGGCGTTATAGATAAAGTGGACCATGTGGCACTTGGTTTTTGTATGTTCAATAATTGCTACTGTATTCCTGCAAATTGGAAGTGGCAGAGTGGCCTTGGTACCACGCTGCACTGAGATTCAGCCATTAGTCGCTCTCCTATTCATATTTTTTTTAAAAAAATAAAAAGATTCCTGCCAATTAAAAATTAACGTGTTACTTTATAAAATTGTTGCTGATGTTTAAGTGATGTGTGGTGCAGGTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAGGTTATGTTTTTGTATAATCACATTCATGAGATGCTTCTGTTTTTTGAGATAAAAACGGTGGATAATACACTATTTAAGCAGCTGATTGAGTAACTAATTTAAATATCAGAATACTGTATTTACAGAGATTGATGGCATAAAGCCATTGTTATACTGAAAATATACTGTGCTTTGTGAACTCTCATATATCTCAAGCGAAACTAAGTTAGTGTAGACCTCTATGACTGACTTGACATATACTACATGCTGATCTATATTGTTCCATGCAGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTA</genome_strand>
        <mrna_strand>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG.............................................................................................................................................................................................................................................................................AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E276076" ref_strand="+" ref_description="SGN-E276076 [cLEN-12-B1]">
      <seq>gcttgggaatatgcaaaaagcatggcaggcatgccttatggttaccacaacttaatatttagctggatagacacaattgatggaaattacccctcacccttggatgctaatctggttgcttctgtcatgactgtttggaaccaccttcagcctgcatatgctgcgaacatgtggaatgaagccttgaacaagcgactcggaactaagaaccttagtcttcctgatattcttgtggaagttgaaaagcgtggattctcttttgccaaattgttggctattccagagaaggatgattgggtttatagtgatggaaagtcgacatcatgtgttgcttttattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="47214" stop="45116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46914" g_stop="46801" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45912" g_stop="45820" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="207" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45550" g_stop="45416" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="342" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E276076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46914" e_stop="46801"/>
          <exon e_start="45912" e_stop="45820"/>
          <exon e_start="45550" e_stop="45416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTGGTAATGCATATTATTTTACGGTACAGTCTTGCCAATTTTGTGCTTACAGCATTATATGAAGCTGCTTGCTTTCATACGGTCCTCTACTTCCTGATTCCTCTGGTTTGTGACTATACTCAGCTGTTCTTTGCTGGATTATGTCCTCACAAATAAACAAAATAATTACTAATAGAGGGTAACATAGACCTCAGCATATTTAGTTGCTCTGCTAGTGAAATAATATTGTTGGACATGAAGTAAAATTGGGTAAACGCATGCATTTCACACACTGGTTTCATGTATCAAACAGTATCAAAATTTCCATAAGGGTAATATCCATTTGAATTTTGACTTGATTTTATCATCAGTTTCTTCTCACAGAGCTTCATTTCACTGCTATTAACTATCTATAATGAGTCTAGTGTTGCATAGAACTCCACAAAGTATGCATGTGAAACTTAAGCAGTAAATAGATGATCGGTTAATATTTCGTGTCTCGTGAGAGCTAAAATAGTATTTTGGTGTAAGAAACTTGAAGCACCATAGAGTCGTGAATGAGCTTGAAATTACTCTTTGTGATATGAGATAGGCAGTTTGAATCAGAAATTAGGAGGATGAAGGGTGAGGAGTGGGAAGAGACGATAACGACATTAAGCAAGTAGAAATGCCAGGCGTTATAGATAAAGTGGACCATGTGGCACTTGGTTTTTGTATGTTCAATAATTGCTACTGTATTCCTGCAAATTGGAAGTGGCAGAGTGGCCTTGGTACCACGCTGCACTGAGATTCAGCCATTAGTCGCTCTCCTATTCATATTTTTTTTAAAAAAATAAAAAGATTCCTGCCAATTAAAAATTAACGTGTTACTTTATAAAATTGTTGCTGATGTTTAAGTGATGTGTGGTGCAGGTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAGGTTATGTTTTTGTATAATCACATTCATGAGATGCTTCTGTTTTTTGAGATAAAAACGGTGGATAATACACTATTTAAGCAGCTGATTGAGTAACTAATTTAAATATCAGAATACTGTATTTACAGAGATTGATGGCATAAAGCCATTGTTATACTGAAAATATACTGTGCTTTGTGAACTCTCATATATCTCAAGCGAAACTAAGTTAGTGTAGACCTCTATGACTGACTTGACATATACTACATGCTGATCTATATTGTTCCATGCAGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTT</genome_strand>
        <mrna_strand>GCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG.............................................................................................................................................................................................................................................................................AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242151" ref_strand="+" ref_description="SGN-E242151 [cLED-37-H10]">
      <seq>tccgagccaagtttaacgagactgctgcttgggaatatgcacgaagcatggaaggaaaatcttatggttaccacaacctaatatttagctggatagacacaattgatggaaattacccaccacccgtggatgctcatctggtggcttctgtcatgactgtttggaaccaaatagcgcctgaatatggttctaacttgtggaacgaagccttaaacaaacgacttggaactcagaaccttagtcttcctgatatacttgttgaagttgaaaagcgtggatcctatgtgaccaaattgttggctattccagagcaagatgactgggtttatagcgacggcaagtcagcatcatgtgttgcttttattcttgaaatgtacaaggaaggaggactatttggtgaacttgcaaactcgattcaggttacagagttcacgataaaagacgcttatactctcaaccttttcgaaaacaattcaagccggttgcctaaatggtgcaatgccgatgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="58961" stop="56599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58661" g_stop="58522" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58521" i_stop="57682" i_length="840">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57681" g_stop="57589" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="233" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57588" i_stop="57393" i_length="196">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57392" g_stop="57192" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="434" r_length="201" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57191" i_stop="56978" i_length="214">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56977" g_stop="56899" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="513" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242151" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58661" e_stop="58522"/>
          <exon e_start="57681" e_stop="57589"/>
          <exon e_start="57392" e_stop="57192"/>
          <exon e_start="56977" e_stop="56899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTGGTAGTGCATGCTATTTTTTCTCTTACCATTTTTTTGTTTGCCCTATTATCTTGAAGGTGTTCCACATATACCCTTACTTTCTAAACCCTCTGGTTTGCGAGTATAGTCATCTCGGCTTAGGCTAAACTATGTCCTATGAAAATAAATAGAAAAATCACAACAAACAGCTAACTTAAATCTGAATTTCGGTTGATCAGCTAATGCGGTATCGCTGGGCACATGAAGTGAAATTTGATGAAGCCTTGATTTCATACACAGACTATTTAGCAATCTTTGTGAGTTGCTAATTGAAATAATAGAGGCCTCAAACTATTTTAGGTCTCATAGCTGCAGGTTTCATGTACTGGACACTATATAGATATTCATACAGGGGTGTTTTGAATCTTAGTGTGATGTTGTCAGTGAATCCATGGAGATTCATTTGACTGGTAGAAATATGCTACTATGATTCACGTGTTCCATATAATTACGTAATTATGCATGTGTGCTGAAGCAGTAAGTATTTGATTGGATTAGTATCTCTTGACAGCTGAATATAAACTTTATTTTAATGTAAAAAACTTAAGTACTGTATGATCATTTGTGAGATTGAAGTTAAGCTACGAAATATCACGTGAGACAATTGATATTAGAAAGTTGTTGATGATGAAGGGTGAGGGATAATAATAGGAACTATGGCACTAACAATTTACAAGAAGCAGAAATGACAGGCATTTTGTAGATAAACATGGTAGTTGTGGTACTTGGTTTTTGTGTTATCGATTGTATGCTTTTGTGTTATGAAATTACATGTTACTACTTTCTGTTATCGTTGTTTACAAACATGGCTGGGTGGTGCAGGTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAGGTTATATATAAATTTTGATCACTTCCATGAAATGCCTCTTTTCATTGAGACAATTAGTAGACTAAATATTATTGAAGCAGGTGCTAGGTATAATATGTTTCTCGTTTAATAGCTATTTAAAGTGGATCAAATTCCGTAATTACAAAGATTGACATAAAATTCAATATTGAATGCTGTTCCATTTTGTTCCACGCAGAACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACGGTGAGTTTGTCAGATAGATTTTGAAGTATTCTCAGTTTTCCTGATTTGGTTGGTTGCTTCGGCATTTGCCTTGGCCATGTACTTGATGAATCTTAAACTACCTTTTCGCCTTTTCTGTTTAGCATGCATGTCTCTTCTAACAAAGTTATCTTTCTATGTCGGACTCCAGTTCTAGAGTTTCAGGAATTGATGTCGTTTATTGTTGGAACTGCAGATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGACACTA</genome_strand>
        <mrna_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAG....................................................................................................................................................................................................AACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTATGTGACCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACG......................................................................................................................................................................................................................ATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E244708" ref_strand="+" ref_description="SGN-E244708 [cLED-38-K24]">
      <seq>tccgagccaagtttaacgagactgctgcttgggaatatgcacgaagcatggaaggaaaatcttatggttaccacaacctaatatttagctggatagacacaattgatggaaattacccaccacccgtggatgctcatctggtggcttctgtcatgactgtttggaaccaaatagcgcctgaatatggttctaacttgtggaacgaagccttaaacaaacgacttggaactcagaaccttagtcttcctgatatacttgttgaagttgaaaagcgtggatcctctttcgccaaattgttggctattccagagcaagatgactgggtttatagcgacggcaagtcagcatcatgtgttgcttttattcttgaaatgtacaaggaaggaggactatttggtgaacttgcaaactcgattcangttacagagttcacgataaaagacgcttatactctcaaccttttcgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="58961" stop="56642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58661" g_stop="58522" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58521" i_stop="57682" i_length="840">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57681" g_stop="57589" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="233" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57588" i_stop="57393" i_length="196">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57392" g_stop="57192" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="434" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57191" i_stop="56978" i_length="214">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.861" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56977" g_stop="56942" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="470" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E244708" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58661" e_stop="58522"/>
          <exon e_start="57681" e_stop="57589"/>
          <exon e_start="57392" e_stop="57192"/>
          <exon e_start="56977" e_stop="56942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTGGTAGTGCATGCTATTTTTTCTCTTACCATTTTTTTGTTTGCCCTATTATCTTGAAGGTGTTCCACATATACCCTTACTTTCTAAACCCTCTGGTTTGCGAGTATAGTCATCTCGGCTTAGGCTAAACTATGTCCTATGAAAATAAATAGAAAAATCACAACAAACAGCTAACTTAAATCTGAATTTCGGTTGATCAGCTAATGCGGTATCGCTGGGCACATGAAGTGAAATTTGATGAAGCCTTGATTTCATACACAGACTATTTAGCAATCTTTGTGAGTTGCTAATTGAAATAATAGAGGCCTCAAACTATTTTAGGTCTCATAGCTGCAGGTTTCATGTACTGGACACTATATAGATATTCATACAGGGGTGTTTTGAATCTTAGTGTGATGTTGTCAGTGAATCCATGGAGATTCATTTGACTGGTAGAAATATGCTACTATGATTCACGTGTTCCATATAATTACGTAATTATGCATGTGTGCTGAAGCAGTAAGTATTTGATTGGATTAGTATCTCTTGACAGCTGAATATAAACTTTATTTTAATGTAAAAAACTTAAGTACTGTATGATCATTTGTGAGATTGAAGTTAAGCTACGAAATATCACGTGAGACAATTGATATTAGAAAGTTGTTGATGATGAAGGGTGAGGGATAATAATAGGAACTATGGCACTAACAATTTACAAGAAGCAGAAATGACAGGCATTTTGTAGATAAACATGGTAGTTGTGGTACTTGGTTTTTGTGTTATCGATTGTATGCTTTTGTGTTATGAAATTACATGTTACTACTTTCTGTTATCGTTGTTTACAAACATGGCTGGGTGGTGCAGGTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAGGTTATATATAAATTTTGATCACTTCCATGAAATGCCTCTTTTCATTGAGACAATTAGTAGACTAAATATTATTGAAGCAGGTGCTAGGTATAATATGTTTCTCGTTTAATAGCTATTTAAAGTGGATCAAATTCCGTAATTACAAAGATTGACATAAAATTCAATATTGAATGCTGTTCCATTTTGTTCCACGCAGAACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACGGTGAGTTTGTCAGATAGATTTTGAAGTATTCTCAGTTTTCCTGATTTGGTTGGTTGCTTCGGCATTTGCCTTGGCCATGTACTTGATGAATCTTAAACTACCTTTTCGCCTTTTCTGTTTAGCATGCATGTCTCTTCTAACAAAGTTATCTTTCTATGTCGGACTCCAGTTCTAGAGTTTCAGGAATTGATGTCGTTTATTGTTGGAACTGCAGATAAAAGACGCTTATACTCTCAACCTTTTCGAAAAC</genome_strand>
        <mrna_strand>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAG....................................................................................................................................................................................................AACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCANGTTACAGAGTTCACG......................................................................................................................................................................................................................ATAAAAGACGCTTATACTCTCAACCTTTTCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E213749" ref_strand="+" ref_description="SGN-E213749 [cLEC-76-A21]">
      <seq>tgaatcactgtttcatccaaaagatattctgccgctgttaccaagacaggtatcttggcctattatcaattctcttcacagtgccgtggacctattgcctgcttttatgggtgctgcttcagttgaagggaataatacattggagtggaaaggtgcttgcttttacaagaatattgcttggttacagcttcacaacaaatctaaaagtcaatttggtggtggtacccttcatatcaaggtgagcaatgcacacagttggacatgtttggacctttacatctttgcaaccccatatcgtgtaacgtgggattactactttttttctcgtgaacatacccttgaaatcaaagagtggaagtctcaagctgagttagaatatgtaaaaaatagaggggtgtccattttcctattgcaagcaggaacgttaggaaccctttcagcaatatggaatgctttccccttgttcgtcaataatggatggggcgagaagtcaaatattgattttctagagaaacatatgggtgcttcatttgaagaacgtccacagccgtgggtcacaaaccttactactgatgacattcattctggagattttcttgctatttcaaaaattagaggtacctgnggcgcttttgagactttagagaaatgggcaacgggctcttatgctggccatactgctgtttgcttgagagatgctgaangaaaactatgggttggcgaatctggaaatgataaatgacagggagaagatgtgattgctatattaccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="61448" stop="58437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61148" g_stop="60911" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60910" i_stop="59628" i_length="1283">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59627" g_stop="59487" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="379" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59486" i_stop="59395" i_length="92">
            <donor d_prob="0.352" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59394" g_stop="59029" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="745" r_length="366" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59028" i_stop="58768" i_length="261">
            <donor d_prob="0.963" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58767" g_stop="58737" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="776" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E213749" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61148" e_stop="60911"/>
          <exon e_start="59627" e_stop="59487"/>
          <exon e_start="59394" e_stop="59029"/>
          <exon e_start="58767" e_stop="58737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCACTGTTTCATCCAAAAGATATTCTGCCGCTGTTACCAAGACAGGTATCTTGGCCTATTATCAATTCTCTTCACAGTGCCGTGGACCTATTGCCTGCTTTTATGGGTGCTGCTTCAGTTGAAGGGAATAATACATTGGAGTGGAAAGGTGCTTGCTTTTACAAGAATATTGCTTGGTTACAGCTTCACAACAAATCTAAAAGTCAATTTGGTGGTGGTACCCTTCATATCAAGGTTTTCCCCCAAATCTAATTTTTTTCTATTTTGTTTTCATTTGGGTGTTGGTGTTCAATAAAGTGATTAGACGTAGAGTCGTGATTTGAAGTTTATGGGTTCTGAAATGCTATTTTTTAACACATGGCTCCTATTAGTTATTGATTGGGTTCGCAATTAAATATATAGACATACTATCCACTCGTCAACATAAATTTTGGAGGTGTTTAGATGATTAATTTGTAAGTTAGAGTTGGAGACGAGTTGAGGCGTGTAGATGTGCATAATTAAAATTAGAGTGCTTACATTGTCAGTTGAGGTCAAATTTGAGTGTTTGTTTATGGATTATGCCAAATATTATGCTACTTACTTCACCTCTGTCCATGTAACAAACCAGTTGCAATAGCTATTTTTCAAATTTCATTATTGTTTTCCTGTATCTTTAGTTGTTTTTCTTATATAGAAGTTCTTGTCCATGTGCATATTGTAGAGTTTGGGATGATGTTGTGCCAATTTTTTTTAAAAATCATTGGGAACTGGGACTTGGATTACGAAAATGTTTTCCTCTCGTTTAGTATTTTTTTTTGAGTTGATCTTTGGGGAGCCTTGACGCAATGGTGGAAGTTGTCATGGGATTAGGAGGTCATGCATTTAAGCGATGGAGATAGACTCTTGCAGTGATGCAAGGTAAGGCTATGTATAGTAGACCCAATGCGATCCTGGATCCTGTAGATAGCGGGAGCTTAGAGGTTCGGGCTGCCCTTAATCGTAACATGATTCCTGGAATTAGTTTGCTTAACGAGTCCTTGAAGCTTCTTTGAAAGTTCCTTATGTTGTTAGATATCTGTTTGATTTGGTTGCCAGATTAATGGAAAAATAGTGGAAGTTAATTAATCTTGATTCTTTGCTCAACTCTTCACGGGAAGCTACAAAAGTTGACTTTTATCTCACTAATATAATTCAGTACTTACTGAATGCTTGTGGGAAAGAGGTATCTTTTTGAAAAAACCCATCCTTTGGACGCCTTTCCGTTGATTATATGTTGCCTGTATTTAGTTGCAACAATCTCATGCTTGGAGAAATTGCAAATGCAGATGTTACTGGACCGTATGTAATGTATAATTTTTCTTCTACATTTGGAATGAAAATGTTTTGGAATGTGAAATCTGTATACATGTTAGTATGACATGTTTCTTTTTAATGCTTGGATGCAAAGAGTTCCGATTTTAGTGACAACGCTTGATCACACTGGGGTTTTGTACTTCTTATTTTTATATTTGTATTTCTGTTACAATATTATGTAGGTGAGCAATGCACACAGTTGGACATGTTTGGACCTTTACATCTTTGCAACCCCATATCGTGTAACGTGGGATTACTACTTTTTTTCTCGTGAACATACCCTTGAAATCAAAGAGTGGAAGTCTCAAGCTGAGTTAGAATATGTGAGTCACCAGCCTTTCATGAATGATTTTCATTGGTCATTGATCTAAGCGTACTTCTGTTATAGTTTAATGGATCAACTTAATTGAAACAGGTAAAAAATAGAGGGGTGTCCATTTTCCTATTGCAAGCAGGAACGTTAGGAACCCTTTCAGCAATATGGAATGCTTTCCCCTTGTTCGTCAATAATGGATGGGGCGAGAAGTCAAATATTGATTTTCTAGAGAAACATATGGGTGCTTCATTTGAAGAACGTCCACAGCCGTGGGTCACAAACCTTACTACTGATGACATTCATTCTGGAGATTTTCTTGCTATTTCAAAAATTAGAGGTACCTGGGGCGCTTTTGAGACTTTAGAGAAATGGGCAACGGGCTCTTATGCTGGCCATACTGCTGTTTGCTTGAGAGATGCTGAAGGAAAACTATGGGTTGGCGAATCTGGAAATGAT-AATGACAAGGTGGTGGAATTTTTAAAATATATTTTTCTGATGATGTTTAACTCGCTGTTCCCAAATTCTTGTGTTCCTCTATAGTCTTTAAAAATGTTATTGATTAACATCACATTTGCTTCTCTTCCCGTAGTTTAGCACGTTATCTAACAAAATTAACAATCATCCAGACAGGAATTTACACATTGAGAATTCATTCATAATTCATAGTAAATTTCATTGTTAATGACTCATTTTTGCACCAATTTTGTTGTTTGTGCTTCCTTTCAGGGAGAAGATGTGATTGCTATATTACCATGGG</genome_strand>
        <mrna_strand>TGAATCACTGTTTCATCCAAAAGATATTCTGCCGCTGTTACCAAGACAGGTATCTTGGCCTATTATCAATTCTCTTCACAGTGCCGTGGACCTATTGCCTGCTTTTATGGGTGCTGCTTCAGTTGAAGGGAATAATACATTGGAGTGGAAAGGTGCTTGCTTTTACAAGAATATTGCTTGGTTACAGCTTCACAACAAATCTAAAAGTCAATTTGGTGGTGGTACCCTTCATATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAATGCACACAGTTGGACATGTTTGGACCTTTACATCTTTGCAACCCCATATCGTGTAACGTGGGATTACTACTTTTTTTCTCGTGAACATACCCTTGAAATCAAAGAGTGGAAGTCTCAAGCTGAGTTAGAATAT............................................................................................GTAAAAAATAGAGGGGTGTCCATTTTCCTATTGCAAGCAGGAACGTTAGGAACCCTTTCAGCAATATGGAATGCTTTCCCCTTGTTCGTCAATAATGGATGGGGCGAGAAGTCAAATATTGATTTTCTAGAGAAACATATGGGTGCTTCATTTGAAGAACGTCCACAGCCGTGGGTCACAAACCTTACTACTGATGACATTCATTCTGGAGATTTTCTTGCTATTTCAAAAATTAGAGGTACCTGNGGCGCTTTTGAGACTTTAGAGAAATGGGCAACGGGCTCTTATGCTGGCCATACTGCTGTTTGCTTGAGAGATGCTGAANGAAAACTATGGGTTGGCGAATCTGGAAATGATAAATGAC-AG.....................................................................................................................................................................................................................................................................GGAGAAGATGTGATTGCTATATTACCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E730933" ref_strand="+" ref_description="SGN-E730933 [LA25CF05]">
      <seq>cgcattatggttggcattttgattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtccgcaccaggggcactcgactcacatacgtgggccgggccccttatagcacgctgcatcggctaccccgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaaaatcttctgcaacgatccaactactctggcgttcgtcggggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63244" stop="64568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63543" g_stop="64268" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E730933" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63543" e_stop="64268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTG</genome_strand>
        <mrna_strand>CGCATTATGGTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCCGCACCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCACGCTGCATCGGCTACCCCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAAAATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E731114" ref_strand="+" ref_description="SGN-E731114 [LA26AG05]">
      <seq>atttttcttggcattttgattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacngatccactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacggcgggaatactcgtatcgaggggaacacacgctgatcatcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63246" stop="64704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63546" g_stop="64404" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E731114" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63546" e_stop="64404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAAC-GATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGAC-GCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGC</genome_strand>
        <mrna_strand>ATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACNGATCC-ACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGGCGGGAATACTCGTATCGAGGGGAACACACGCTGATCATCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E738144" ref_strand="+" ref_description="SGN-E738144 [LC12CC01]">
      <seq>tttttcttggcattctgattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattngtagtggaatttgggactcgattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63247" stop="64759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63547" g_stop="64459" g_length="913"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="913" r_length="913" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E738144" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63547" e_stop="64459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGG</genome_strand>
        <mrna_strand>TTTTTCTTGGCATTCTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTNGTAGTGGAATTTGGGACTCGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E539804" ref_strand="+" ref_description="SGN-E539804 [TUS-59-M1]">
      <seq>tgattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63262" stop="64632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63562" g_stop="64332" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E539804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63562" e_stop="64332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTA</genome_strand>
        <mrna_strand>TGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E284777" ref_strand="+" ref_description="SGN-E284777 [cLES-3-L17]">
      <seq>gattgcaaatccaacctaaaagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63263" stop="64374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63563" g_stop="64074" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E284777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63563" e_stop="64074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAAT</genome_strand>
        <mrna_strand>GATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E727580" ref_strand="+" ref_description="SGN-E727580 [LA15AE04]">
      <seq>cgataagttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaancacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaaattggaactcgattttggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63278" stop="64762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63578" g_stop="64462" g_length="885"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="885" r_length="885" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E727580" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63578" e_stop="64462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACG</genome_strand>
        <mrna_strand>CGATAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAANCACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAAATTGGAACTCGATTTTGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E704207" ref_strand="+" ref_description="SGN-E704207 [FA23CF01]">
      <seq>gttccttcaatatgtcttccattctacctcaaaaccatgccattagatcctcacaacgagccctcgataaaattggaacgatacagaaaagatccagtacaaatcgagctaagagcaccttccgccatgttctcctaccttcacgagtctattgtatctcttcctccacctcctcttcctcgtccaacattgccacaatcaccaccaaaccaccacccgtctcagaaccactaacttacgacccactcactcccatcacaaaaaacaagatgagtaatacgaaaagtgtattaaatgacccgagtttaaaatccacttgggctcatcgagcctggatggcaagtgggtgcaccaccgtgctaattcctttagcacggtctgcagcaggggcactcgactcacatacgtgggccgggccccttatagcaagctgcatcggctacatcgtagcggatttagcttccggaatctaccattggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgntagtggaatttggaactcgattttggacgactcgaagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63284" stop="64775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63584" g_stop="64475" g_length="892"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="892" r_length="892" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E704207" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63584" e_stop="64475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTT</genome_strand>
        <mrna_strand>GTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGNTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E539801" ref_strand="-" ref_description="SGN-E539801 [TUS-59-M1]">
      <seq>gaatctcccattggggaattgacaattagggcaacgctgaatcccctgtttttggagcccaaattgatgcatttcaaggtccccataaatggccatggacaatcacccgacgggaattttttaacaatttccattccttagcaggggcagggacattcacagtccttccaatcaatattttttgcaaggatccaaatattttggggtttgtgggggtttgttcagggtgcattatgttcagccaacagtttcatttttgggctcatggtacgaaaagtaagttaccttcaatggggttagcattacaagacgccggaatatttgtattgggggaaaaacacggtgatcatcatcgggttccgtaaaacaacaattactgcattgttaggggaatttggaactcgattttgggggactcgaagttttttgagctgagggggaggatttttttttttaaattgggagtttggccaagatcatggggtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttttgtttcccattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttatattttattttttccgattagtattgaaatgatattgatataccccccgaataagcatcctcccctttcaactataagaaaaaaagttcgggttccctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63749" stop="65068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64049" g_stop="64757" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="754"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E539801" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539801" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64049" e_stop="64757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACACCACGAATAAGCATCCTCCACTTTCAACTATAAGAATATAAGTTCGAGTTACATAAAAAAAGGAA</genome_strand>
        <mrna_strand>GAATCTCCCATTGGGGAATTGACAATTAGGGCAACGCTGAATCCCCTGTTTTTGGAGCCCAAATTGATGCATTTCAAGGTCCCCATAAATGGCCATGGACAATCACCCGACGGGAATTTTTTAACAATTTCCATTCCTTAGCAGGGGCAGGGACATTCACAGTCCTTCCAATCAATATTTTTTGCAAGGATCCAAATATTTTGGGGTTTGTGGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTTTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATGGGGTTAGCATTACAAGACGCCGGAATATTTGTATTGGGGGAAAAACACGGTGATCATCATCGGGTTCCGTAAAACAACAATTACTGCATTGTTAGGGGAATTTGGAACTCGATTTTGGGGGACTCGAAGTTTTTTGAGCTGAGGGGGAGGATTTTTTTTTTTAAATTGGGAGTTTGGCCAAGATCATGGGGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTTTGTTTCCCATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACCCCCCGAATAAGCATCCTCCCCTTTCAACTATAAGAAAAAAAGTTCGGGTTCCCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E739173" ref_strand="+" ref_description="SGN-E739173 [LC16BF05]">
      <seq>ggggtaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63761" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64060" g_stop="64652" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E739173" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64060" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GGGGTAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E738797" ref_strand="+" ref_description="SGN-E738797 [LC15AA05]">
      <seq>gcggtattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63763" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E738797" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GCGGTATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E739323" ref_strand="+" ref_description="SGN-E739323 [LC17AA01]">
      <seq>gcggtattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63763" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E739323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GCGGTATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E739746" ref_strand="+" ref_description="SGN-E739746 [LC18CG08]">
      <seq>gcggtattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63763" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E739746" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GCGGTATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E738391" ref_strand="+" ref_description="SGN-E738391 [LC13BH05]">
      <seq>gcggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63763" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E738391" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GCGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E736383" ref_strand="+" ref_description="SGN-E736383 [LC05CD04]">
      <seq>ggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63761" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E736383" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E737163" ref_strand="+" ref_description="SGN-E737163 [LC08CH05]">
      <seq>ggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63761" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E737163" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E737612" ref_strand="+" ref_description="SGN-E737612 [LC10CC04]">
      <seq>ggggaattgacaattacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatatacaatgttgattggcttaagttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63761" stop="64950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64061" g_stop="64652" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E737612" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64061" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATT</genome_strand>
        <mrna_strand>GGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E733325" ref_strand="+" ref_description="SGN-E733325 [LB04CC09]">
      <seq>catttacggcaacgctgaatcccctgttttcggagcccaaattgatgcatttcaaggtcaccataaatggccatggacaatcacccgacgcgaattctctaacaatctccattccttagcacgagcagtgacattcacagtccttccaatcaatatcttctgcaacgatccaactactctggcgttcgtcggggtttgttcagggtgcattatgttcagccaacagtttcattcttgggctcatggtacgaaaagtaagttaccttcaatcgtgttagcattacaagacgccggaatactcgtatcgagggaacaacacgctgatcatcatcgcgttccgtataacaacaattactgcattgttagtggaatttggaactcgattttggacgactcgaagttttttgagctgatggagatgattttcttctttaaattcggagttcggccaagatcatggagtgaaccaaattcagaatggattgaagaagctgaaatacaatcaatttctgcttcacattgaattcaatttatagtatatgaaacagttaatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="63771" stop="64929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64071" g_stop="64635" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E733325" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64071" e_stop="64635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGA</genome_strand>
        <mrna_strand>CATTTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E746305" ref_strand="+" ref_description="SGN-E746305 [GI|47104749]">
      <seq>gtttttattttttagtcaatttctttgtcccattttccatttttagctgtaaaaatggttggttgttgattttttctgataatttttctgttttttttttgtgtcaactccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattttggtgtagtaaaaatctaatcttgctggatacccatctatgttcttggtttgattcttgatttttgcaccctttttagtttaatcaagtttagtttaagttgtatcagctatattttgctagatctgctttaatgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgcttgtaaatcgatatcgaaaaagaagcttgttactaaggctgataaggatgatatgaggagggagattaagattatgcagcatttgagtggacaacctaatattgttgaatttaaaggtgcttatgaggataaaggttcagtgtatcttgtgatggagttgtgtggagggggagagctattcgataggattatagcaaaggggcattacagtgaaagagctgctgcaacaatgtgtagggctattgtcaatgttgtgcacgtttgcaattttatgggcgtgttgcatcgtgatctcaagcctgaaaactttttgttgtctgataagagtgaaaatgctgctctaaagattactgattttgggctgtcggtattcattcaagaaggtaagtcgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73361" stop="78544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73661" g_stop="74640" g_length="980"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="980" r_length="980" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75607" g_stop="75750" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1124" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1277" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1278" r_stop="1393" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1394" r_stop="1561" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1562" r_stop="1689" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1690" r_stop="1789" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77885" g_stop="78243" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1790" r_stop="2148" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2149" polyA_stop="2161"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E746305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2148</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73661" e_stop="74640"/>
          <exon e_start="75607" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAGGTATATTTGGCTTTACATTGTCATTTTATGTTATGTACGTACTTTTGGACAGAGTTCTTTAATTGTTAATTCTATTGCATTGAAACACAATTATCAGTCAAATCACTAACATTTCCGTGTTTTACAGATTCGTGTCTTCTGGATCTTAGTGAACATGTCAAGGCTAAAATTTTGATCTTTAAGTTCAGGGTTAGGATTAAGTATTTAGCTAAAACGTTATCTTTAGAAGTAATCACAGTCACATGTGGATTTCTATTTACACCTATGTTAGTCTTGTATATCTTATGTCCTCCATTCAAGTGTCATATTTGACATCCACGGGGAACATTTAAAGGGAACTTCTTAGTTGGATATAAATAATCGACAAGCATATATGAGTACTCAGCTTATCATCAGATAGTAAGCAGGTTGCTGATTATTGTGCTTTTCTTTTTAATTTACGAAATCGTTGCACTGCAAGATCGGATGAGAATATGCAGAGAAAACATTAGTTTTACTAGATTGAATTTGCAGCCGAATTTAATTCTATCCCATTCAGTTTGTAGAATGAAACTAGTAGTTTTTAGCCCGATAAGTTGATTGTTCACCTTTTTAAATCAGCATGTAGGTGTATTCTATTTGTGACACTAGGTCCGCGTCAGAATTTTATAGCCTGACGTAATCGGCATGCTATATTGTATGTACATTTATGAAACAGTAGTTGCATTTTGCACACTCACTGCATACAGATTTTGTGTATTAGTAAGCCAATTATTGACTACTTCAGTTGTGATGAATGCCTTCCCTTTTTACAAATATGTTGAAGTACCATGCCTTGGCAGTTCCTTTGTGATTTTCTTATATCTCTTTACTATTACTAACCTTGCCGAATTTCTTGATCTTCTTCTTATCCTGACTACTACTAACATAGCTTGTATCTGCTAATTTTTTTTCTGCTTTTATATATGGATATGAAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCAC</genome_strand>
        <mrna_strand>GTTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E303881" ref_strand="+" ref_description="SGN-E303881 [cLEX-4-K21]">
      <seq>tttttattttttagtcaatttctttgtcccattttccatttttagctgtaaaaatggttggttgttgattttttctgataatttttctgttttttttttgtgtcaactccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattttggtgtagtaaaaatctaatcttgctggatacccatctatgttcttggtttgattcttgatttttgcaccctttttagtttaatcaagtttagtttaagttgtatcagctatattttgctagatctgctttaatgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaaaatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73362" stop="74509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73662" g_stop="74209" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E303881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73662" e_stop="74209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATT</genome_strand>
        <mrna_strand>TTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAAATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E334327" ref_strand="+" ref_description="SGN-E334327 [cTOD-21-M24]">
      <seq>ttattttttagtcaatttctttgtcccattttccatttttagctgtaaaaatggttggttgttgattttttctgataatttttctgttttttttttgtgtcaactccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattttggtgtagtaaaaatctaatcttgctggatacccatctatgttcttggtttgattcttgatttttgcaccctttttagtttaatcaagtttagtttaagttgtatcagctatattttgctagatctgctttaatgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgcttgtaaatcgatatcgaaaaagaagcttgttactaaggctgataaggatgatatgangagggagattaagatatgcagcatttgagtggacaacctaatatttgtgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73365" stop="74669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73665" g_stop="74369" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E334327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73665" e_stop="74369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTT</genome_strand>
        <mrna_strand>TTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGANGAGGGAGATTAAGA-TATGCAGCATTTGAGTGGACAACCTAATATTTGTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E737518" ref_strand="+" ref_description="SGN-E737518 [LC10AG04]">
      <seq>ccattttccatttttagctgtaaaaatggttggttgttgatttttttctgataatttttctgttttttttttgtgtcaactccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattttggtgtagtaaaaatctaatcttgctggatacccatctatgttcttggtttgattcttgatttttgcaccctttttagtttaatcaagtttagtttaagttgtatcagctatattttgctagatctgctttaatgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgcttgtaaatcgatatcaaaaaagaagcttgttactaaggctgataaggatgatatgaggagggagattaaaattatgcagcatttgagtggacaacctaatattgttgaatttaaaggtgcttatgaggaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73390" stop="74694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73690" g_stop="74394" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E737518" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73690" e_stop="74394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGA-TTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTT</genome_strand>
        <mrna_strand>CCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCAAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAAATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGAAAAAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E304455" ref_strand="+" ref_description="SGN-E304455 [cLEX-12-N7]">
      <seq>tccttagtattttcttgaaatttgaagaaaaaagaaaaaaatcaatctttttgcattgttggtgtagtaaaaatctaatcnttgctggatacccatctantgttcttggtttgacttcttgatttgttgcacccttctttagtttaatcaagtttagtcttaagttgtatcgagctatatctttgctagaatctgctttaatagggtattttgtgctagtaaaaggtaaacgctaatacatgctaataagtgggcaccactggatctaggatcanggaggatgttccaattcatacgaaatgagattcagtataccaaactctccaggggcctgaagctcaattacatcgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73469" stop="74557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73769" g_stop="74257" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E304455" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73769" e_stop="74257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATT-TTGGTGTAGTAAAAATCTAATC-TTGCTGGATACCCATCTA-TGTTCTTGGTTTGA-TTCTTGATTT-TTGCACCCTT-TTTAGTTTAATCAAGTTTAGT-TTAAGTTGTATC-AGCTATAT-TTTGCTAG-ATCTGCTTTAAT-GGGTA-TTTGTGCTAGT-AAAGGTAAAC-CTAATA-ATGCTAATAA-TGGGCACCA-TGGATC-AGGATCA-GGAGGA-GTTCCAATTCATA-GAAATGAGATTCAGTATACCAAA-TCTCCA-GGGCCTGAAGCTCAATTACAT-GTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGC</genome_strand>
        <mrna_strand>TCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTGTTGGTGTAGTAAAAATCTAATCNTTGCTGGATACCCATCTANTGTTCTTGGTTTGACTTCTTGATTTGTTGCACCCTTCTTTAGTTTAATCAAGTTTAGTCTTAAGTTGTATCGAGCTATATCTTTGCTAGAATCTGCTTTAATAGGGTATTTTGTGCTAGTAAAAGGTAAACGCTAATACATGCTAATAAGTGGGCACCACTGGATCTAGGATCANGGAGGATGTTCCAATTCATACGAAATGAGATTCAGTATACCAAACTCTCCAGGGGCCTGAAGCTCAATTACATCGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E747131" ref_strand="+" ref_description="SGN-E747131 [GI|14029711]">
      <seq>atgggtatttgtgctagtaaaggtaaacctaataatgctaataatgggcaccatggatcaggatcaggaggagttccaattcatagaaatgagattcagtataccaaatctccagggcctgaagctcaattacatgtgagacctccaccaagcccaaaaccagctgtgaggtatgatactattcttggtaagccatatgaagatgttaagttgcactatactcttggtaaagaattgggtaggggtcaatttggtgttacatatctttgtactgaaattgcaactggtcaacaatatgcttgtaaatcgatatcgaaaaagaagcttgttactaaggctgataaggatgatatgaggagggagattaagattatgcagcatttgagtggacaacctaatattgttgaatttaaaggtgcttatgaggataaaggttcagtgtatcttgtgatggagttgtgtggagggggagagctattcgataggattatagcaaaggggcattacagtgaaagagctgctgcaacaatgtgtagggctattgtcaatgttgtgcacgtttgccattttatgggcgtgttgcatcgtgatctcaagcctgaaaactttttgttgtctgataagagtgaaaatgctgctctaaagattactgattttgggctgtcggtattcattcaagaaggtaagtcgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagatggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73659" stop="78259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73959" g_stop="74640" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75607" g_stop="75750" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="826" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="979" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1095" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1096" r_stop="1263" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1264" r_stop="1391" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1392" r_stop="1491" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77885" g_stop="77959" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1492" r_stop="1566" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E747131" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73959" e_stop="74640"/>
          <exon e_start="75607" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="77959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAGGTATATTTGGCTTTACATTGTCATTTTATGTTATGTACGTACTTTTGGACAGAGTTCTTTAATTGTTAATTCTATTGCATTGAAACACAATTATCAGTCAAATCACTAACATTTCCGTGTTTTACAGATTCGTGTCTTCTGGATCTTAGTGAACATGTCAAGGCTAAAATTTTGATCTTTAAGTTCAGGGTTAGGATTAAGTATTTAGCTAAAACGTTATCTTTAGAAGTAATCACAGTCACATGTGGATTTCTATTTACACCTATGTTAGTCTTGTATATCTTATGTCCTCCATTCAAGTGTCATATTTGACATCCACGGGGAACATTTAAAGGGAACTTCTTAGTTGGATATAAATAATCGACAAGCATATATGAGTACTCAGCTTATCATCAGATAGTAAGCAGGTTGCTGATTATTGTGCTTTTCTTTTTAATTTACGAAATCGTTGCACTGCAAGATCGGATGAGAATATGCAGAGAAAACATTAGTTTTACTAGATTGAATTTGCAGCCGAATTTAATTCTATCCCATTCAGTTTGTAGAATGAAACTAGTAGTTTTTAGCCCGATAAGTTGATTGTTCACCTTTTTAAATCAGCATGTAGGTGTATTCTATTTGTGACACTAGGTCCGCGTCAGAATTTTATAGCCTGACGTAATCGGCATGCTATATTGTATGTACATTTATGAAACAGTAGTTGCATTTTGCACACTCACTGCATACAGATTTTGTGTATTAGTAAGCCAATTATTGACTACTTCAGTTGTGATGAATGCCTTCCCTTTTTACAAATATGTTGAAGTACCATGCCTTGGCAGTTCCTTTGTGATTTTCTTATATCTCTTTACTATTACTAACCTTGCCGAATTTCTTGATCTTCTTCTTATCCTGACTACTACTAACATAGCTTGTATCTGCTAATTTTTTTTCTGCTTTTATATATGGATATGAAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAG</genome_strand>
        <mrna_strand>ATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCCATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGATGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E271206" ref_strand="+" ref_description="SGN-E271206 [cLEM-5-A6]">
      <seq>agagaagcttgttactaaggctgataaggatgatatgaggagggagattaagattatgcagcatttgagtggacaacctaatattgttgaatttaaaggtgcttatgaggataaaggttcagtgtatcttgtgatggagttgtgtggagggggagagctattcgataggattatagcaaaggggcattacagtgaaagagctgctgcaacaatgtgtagggctattgtcaatgttgtgcacgtttgcaattttatgggcgtgttgcatcgtgatctcaagcctgaaaactttttgttgtctgataagagtgaaaatgctgctctaaagattactgattttgggctgtcggtattcattcaagaaggtaagtcgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="73978" stop="76036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74276" g_stop="74640" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75607" g_stop="75736" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="495" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E271206" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74276" e_stop="74640"/>
          <exon e_start="75607" e_stop="75736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAGGTATATTTGGCTTTACATTGTCATTTTATGTTATGTACGTACTTTTGGACAGAGTTCTTTAATTGTTAATTCTATTGCATTGAAACACAATTATCAGTCAAATCACTAACATTTCCGTGTTTTACAGATTCGTGTCTTCTGGATCTTAGTGAACATGTCAAGGCTAAAATTTTGATCTTTAAGTTCAGGGTTAGGATTAAGTATTTAGCTAAAACGTTATCTTTAGAAGTAATCACAGTCACATGTGGATTTCTATTTACACCTATGTTAGTCTTGTATATCTTATGTCCTCCATTCAAGTGTCATATTTGACATCCACGGGGAACATTTAAAGGGAACTTCTTAGTTGGATATAAATAATCGACAAGCATATATGAGTACTCAGCTTATCATCAGATAGTAAGCAGGTTGCTGATTATTGTGCTTTTCTTTTTAATTTACGAAATCGTTGCACTGCAAGATCGGATGAGAATATGCAGAGAAAACATTAGTTTTACTAGATTGAATTTGCAGCCGAATTTAATTCTATCCCATTCAGTTTGTAGAATGAAACTAGTAGTTTTTAGCCCGATAAGTTGATTGTTCACCTTTTTAAATCAGCATGTAGGTGTATTCTATTTGTGACACTAGGTCCGCGTCAGAATTTTATAGCCTGACGTAATCGGCATGCTATATTGTATGTACATTTATGAAACAGTAGTTGCATTTTGCACACTCACTGCATACAGATTTTGTGTATTAGTAAGCCAATTATTGACTACTTCAGTTGTGATGAATGCCTTCCCTTTTTACAAATATGTTGAAGTACCATGCCTTGGCAGTTCCTTTGTGATTTTCTTATATCTCTTTACTATTACTAACCTTGCCGAATTTCTTGATCTTCTTCTTATCCTGACTACTACTAACATAGCTTGTATCTGCTAATTTTTTTTCTGCTTTTATATATGGATATGAAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCC</genome_strand>
        <mrna_strand>AGAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E307397" ref_strand="+" ref_description="SGN-E307397 [cLEY-12-O3]">
      <seq>aaatccaatgcaggtaagtcgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75294" stop="77034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75594" g_stop="75750" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="310" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76734" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="423" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E307397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75594" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</genome_strand>
        <mrna_strand>AAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E698486" ref_strand="+" ref_description="SGN-E698486 [FA06CA10]">
      <seq>cgtacaaagatatagttgggagtgcttactatgttgcccctgaggttctaaggaggtgttatggcaaggaaatagacatttggagtgcaggtgttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaaataggtgatccctccctgtattacggaaatcatatctgaagtgggacacagacaatgatggaagaatccattatgaggaattctgtacaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75313" stop="78222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75613" g_stop="75750" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="291" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="407" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="575" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="703" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="806" r_length="103" r_score="0.920"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="0.88"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77885" g_stop="77922" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="844" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E698486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75613" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="77922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGG-AATAGGTGATCCATC-CTGTATTAGGGAAATCATATCTGAAGT-GGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGAT</genome_strand>
        <mrna_strand>CGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAAATAGGTGATCCCTCCCTGTATTACGGAAATCATATCTGAAGTGGGACACAGACAAT.............................................................................GATGGAAGAATCCATTATGAGGAATTCTGTACAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E309598" ref_strand="+" ref_description="SGN-E309598 [cLEY-26-I14]">
      <seq>agggacatttggagtgcaggtgttatgcctttatatacctacctcagtggtgtgccctccattttgggcagaaacccgagaagggtatatttgatgcccataccttaaagggacccattgacctttgaaagccagcccttggccatctgtatcaagtagtgccaaggacccttgtaccagaagatgcctgacctaaagatccaaagaaacggattaccagctgcaccaggttcttgagcctcccttggctgaaggaaggtggtgttgcatcagaccaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaaccaacctcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggcctcaaagcaatgttccacaatattgacccctgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75387" stop="77644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75684" g_stop="75750" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="236" r_length="165" r_score="0.837"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="0.83"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="354" r_length="118" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.895" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77211" g_stop="77344" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="490" r_length="136" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E309598" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75684" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGACATTTGGAGTGCAGGTGTTATG-CTTTATATA-CTA-CTCAGTGGTGTG-CCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAA-CCGAGAAGGGTATATTTGATG-CCATA-CTTAAAGGGA-CCATTGA-CTTTGAAAGCAAG-CCTTGGCCATCTGTATCAAGTAGTGCCAAGGA-CCTTGTA-CAGAAGATG-CTGA-CTAAAGATCCAAAGAAACGGATTA-CAGCTGCA-CAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCAT-CCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAA-CAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGG-CTCAAAGCAATGTTCCACAATATTGA-CACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCT</genome_strand>
        <mrna_strand>AGGGACATTTGGAGTGCAGGTGTTATGCCTTTATATACCTACCTCAGTGGTGTGCCCTCCATTTTGGGCAG...........................................................................................................AAACCCGAGAAGGGTATATTTGATGCCCATACCTTAAAGGGACCCATTGACCTTTGAAAGCCAGCCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCCTTGTACCAGAAGATGCCTGACCTAAAGATCCAAAGAAACGGATTACCAGCTGCACCAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTCCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACCAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACCAACCTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCCTCAAAGCAATGTTCCACAATATTGACCCCTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E346163" ref_strand="+" ref_description="SGN-E346163 [cTOF-34-K11]">
      <seq>ttatgctttatatactactcagtggtgtgcctccattttgggcagaaaccgagaagggtatatttgatgccatacttaaagggaccattgactttgaaagcaagccttggccatctgtatcaagtagtgccaaggaccttgtacagaagatgctgactaaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75406" stop="77895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75706" g_stop="75750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75858" g_stop="76010" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="198" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="314" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="482" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77480" g_stop="77595" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="598" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E346163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75706" e_stop="75750"/>
          <exon e_start="75858" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAGGTAAAGTATCTACTTTGCTTCTCATTATCTGAGATAATACACAGATGACAATTGTTGTCAATATCTAGGAATCAAGGACTTACGATATCTACTTGGTTGATGTACAGAAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAA</genome_strand>
        <mrna_strand>TTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG...........................................................................................................AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E377591" ref_strand="+" ref_description="SGN-E377591 [TUS-20-P1]">
      <seq>aaagatccaaagaaacggattacagctgcacaggttcttgagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacattttcgatctcctcagttcaaacagtctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75671" stop="78411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75971" g_stop="76010" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76737" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="156" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="324" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="452" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="552" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77885" g_stop="78111" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="778" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E377591" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75971" e_stop="76010"/>
          <exon e_start="76622" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTGGTATGTGGCCTGAAAAGTATTGATTATTAATTTTACGAATATCTGTTCCGTTTAAGAAATGTTTCATCATACTAAGAGAAAGTATAAGTCCAACAACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTA</genome_strand>
        <mrna_strand>AAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTTCGATCTCCTCAGTTC-AAACAGTCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E374824" ref_strand="+" ref_description="SGN-E374824 [TUS-15-A3]">
      <seq>aacatatagcacttgcatactccttcatttctagtagttattagtagaaaacaatttcttaggcatcgtctctcagtcgatcagattattctgctttatctcacccaaggggcctacctgctttcctttgcaagatctttacttttatcttcaattacggttggcttcttgagctggatttgttatcaagtaaaccacagttgtatcttcttgtgaaaggagttagacatatgatggggccaaaaccaagtccttgccgccaaaattagcttatatagagatcaatctgtttctggcctgtaagttctaacagcgtcatttctagctttaggatatgccaaataattttagttctgcgcagtcttatactctgttaaagagcctctcttgatttcacaaatgccattatatatctgaatagcatgattttatgtttggactggtgattatacatgtgttgccagtatggtttgttatatcttattctaaccatactgttggtgcgtgtaattgacagagcatccttggctgaaggaaggtggtgttgcatcagacaaaccattagagggtgctgtcctatcaagaatgaagcaattcagagctatgaacaaactcaagaaactcgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75805" stop="77034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76105" g_stop="76734" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E374824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76105" e_stop="76734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</genome_strand>
        <mrna_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E201604" ref_strand="+" ref_description="SGN-E201604 [cLEC-11-A18]">
      <seq>aacatatagcacttgcatactccttcatttctagtaggtattagtagaaaacaatttcttaggcatcgtctctcagtcgatcagattattctgctttatctcacccaaggggcctacctgctttcctttgcaagatctttacttttatcttcaattacggttggcttcttgagctggatttgttatcaagtaaaccacagttgtatcttcttgtgaaaggagttagacatatgatggggccaaaaccaagtccttgccgccaaaattagcttatatagagatcaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="75805" stop="76692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76105" g_stop="76392" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E201604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76105" e_stop="76392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCT</genome_strand>
        <mrna_strand>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGGTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E349570" ref_strand="+" ref_description="SGN-E349570 [cTOS-1-H15]">
      <seq>gagctatgaacaaactcaagaaactcgctttgaaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagnntcaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaagctttgaattaagccactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76403" stop="78505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76703" g_stop="76737" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473">
            <donor d_prob="0.941" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77211" g_stop="77378" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="203" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="331" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="431" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77885" g_stop="78205" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="752" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E349570" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76703" e_stop="76737"/>
          <exon e_start="77211" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTATGAACAAACTCAAGAAACTCGCTTTGAAGGTAATCTTAGAGTTTATGAACTCTTCTGCAACTAAATCTAGGTGAAGGGAGGGGGGGGGGGGTAAAAGGGTAGTTCAAATTTCTTATATTGGCTTTGTTTGTCGAAAGAAGACGAAAGGACTGTTTTTTTGCATGTATGGCATTACTCGTATGATAGTCATGTTACTTTACATGCAAGAAAATTACCTTTTTCACTTTGTCTGCTTTAATCACTTCCTTCCGTTCCTTTCAAGCCAACAATATGTGAAGAACATGATTAGATTTAGCATGAGCTTTAGTCGGCTTTCTTACTTACTTACTCATAGTTGTATGATAAAAACATAGTACACCTTTTTAATTGTCTTTTGACATTTTACCTTATTCTGGGGGTCCATGTAACTTCCTTATTCGGGATCCTGTGCTGGCATGCTAGCTGTCTTGTTCTTCCTTCTGCGAGTAATAACACATTGCGCATTGTCTGTTGCTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCT</genome_strand>
        <mrna_strand>GAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGNNTCAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAAGCTTTGAATTAAGCCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E324966" ref_strand="+" ref_description="SGN-E324966 [cTOC-11-J23]">
      <seq>ctggaatcaggtcattgccgagaatctctctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76901" stop="78333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77201" g_stop="77378" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="306" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="406" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78033" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="555" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E324966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77201" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGC</genome_strand>
        <mrna_strand>CTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E292767" ref_strand="+" ref_description="SGN-E292767 [cLET-11-J14]">
      <seq>tctgcggaagaaattcacgggctcaaagcaatgttccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaagatgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76929" stop="78324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77229" g_stop="77378" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="278" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="378" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78024" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="518" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E292767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77229" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTC</genome_strand>
        <mrna_strand>TCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAAGATGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E377592" ref_strand="-" ref_description="SGN-E377592 [TUS-20-P1]">
      <seq>aattcacgggctcaaagcaatgtcccacaatattgacactgataatagtggcactataacttatgaagaactgaagagtggattggctaaacttgggtcaaagctcaccgaggctgaagtcaagcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="76940" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77240" g_stop="77378" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="267" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="367" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="730" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E377592" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377592" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77240" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>AATTCACGGGCTCAAAGCAATGTCCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E374897" ref_strand="-" ref_description="SGN-E374897 [TUS-15-A3]">
      <seq>agcaattgatggaagctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacatttgatgtttaatgagttgtgtcattcattcattgaggttcattttagtgaagatattaaatcagcttcatttttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77062" stop="78628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77362" g_stop="77378" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="145" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="245" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78332" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="693" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E374897" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374897" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77362" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTGATGGAAGCTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</genome_strand>
        <mrna_strand>AGCAATTGATGGAAGCT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E231896" ref_strand="-" ref_description="SGN-E231896 [cLED-7-J19]">
      <seq>ctgctgatgtagatggaaatggctcaatcgactacactgaattcatcaccgccaccatgcataagcacaggctagaaagagacganaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77180" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77377" g_stop="77378" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77480" g_stop="77607" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="130" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="230" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="593" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E231896" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231896" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77377" e_stop="77378"/>
          <exon e_start="77480" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAGTCAGAACTACTAAAAGTTATTAACCATTTCTTTCGACTTCATAAAATTAATAAATTGATGTGCCCCAAATAATATCTCGTGCCTTGTATACTTCAGGCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>CT.....................................................................................................GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGANAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241603" ref_strand="-" ref_description="SGN-E241603 [cLED-36-K9]">
      <seq>atgcataagcacaggctagaaagagacgaaaatctatatactgcatttcagtatttcgataaagatagcagtgggttcattacaagagatgaactcgaggctgctatggaagaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77234" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77534" g_stop="77607" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77708" g_stop="77807" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="174" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="537" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E241603" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77534" e_stop="77607"/>
          <exon e_start="77708" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGGGTACGTCCTATGTGCACCTCTAGTGTAAAAACATGACCAAACCAACAAAATCATGAGATAGTTGGCTCAAAATTTACCTTTTTTGATGTTATAATGGTAGGTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>ATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG....................................................................................................GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E244713" ref_strand="-" ref_description="SGN-E244713 [cLED-38-O4]">
      <seq>gaacatggaataggtgatccatcctgtattagggaaatcatatctgaagtggacccagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77445" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77745" g_stop="77807" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="426" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E244713" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244713" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77745" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>GAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACCCAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E239543" ref_strand="-" ref_description="SGN-E239543 [cLED-23-G13]">
      <seq>atggaataggtgatccatcctgtattagggaaatcatatctgaagtggacacagacaatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77449" stop="78547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77749" g_stop="77807" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77885" g_stop="78247" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="422" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E239543" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77749" e_stop="77807"/>
          <exon e_start="77885" e_stop="78247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</genome_strand>
        <mrna_strand>ATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E215539" ref_strand="-" ref_description="SGN-E215539 [cLEL-20-O11]">
      <seq>aatgatggaagaatcaattatgaggaattctgtacaatgatgagaagtggagccaaacaaccaggcaaggtcttctagttccacgagtatccttgcgggcaagttgtagaagagctgttcttgaaaatgtgcaggatgagctctgtcgttgcttccattagtgatgtttaaacgttttccagtaaaaaccatgtacatttcggatctcctcagttcaaaacagtcttttatgagtgtttctgtttgttttctgcacgatttttcctcccttgtgtaaactgcatcagtttgggactagaaaaggctttgaattaggccactcctagcaaatgatatatttcaatcgtcgaagatttcaccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="77583" stop="78544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77805" g_stop="77807" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77">
            <donor d_prob="0.828" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77885" g_stop="78243" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="362" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="378"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E215539" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215539" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77805" e_stop="77807"/>
          <exon e_start="77885" e_stop="78243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGAGTTTTCACTGCTTTCCGGTAAATAGTTGAACTGTATCCCCTCGCTACAAATGCTAATTCTGTCGAATTTTCAGGATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCAC</genome_strand>
        <mrna_strand>AAT.............................................................................GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E252737" ref_strand="-" ref_description="SGN-E252737 [cLEG-16-D23]">
      <seq>ttttttccctctttttcgactgttcaaggactgaggaaagaattcagttcgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttttaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcccagtatatttgttgtaaaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttttgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttcacaaaaaaaaaaaaaaaaaaaatataaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79463" stop="20935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79158" g_stop="78772" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="396" r_length="379" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78771" i_stop="78160" i_length="612">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.206" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78159" g_stop="78106" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="449" r_length="53" r_score="0.537"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E252737" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79158" e_stop="78772"/>
          <exon e_start="78159" e_stop="78106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAGTGTCTGTGTTTATCCTGACCTTGCAATCCATTTACAGAGTCTGCATAGTACTTTATTACCAGTTGATAGTTTGTGTATCTAAAACCTGCCAGTTTTTCACCTTGAATAGTCTGTCAGGTGCCAGCAACAGGGCCACATGATAACTTTGTGAAGCTTATAAGTGTATTAAAAGAGAGATTACCAAACATATACAACAGATAAGAGAAATGAACAGGCTAACAGCTAAGTTACTGGTTTTATCCTCTTCTTTTTTTTTGTTTCTCACTCGTGTCTAGTATCTATATTGGAGTCCGACTATATTCAAGCTGTGGGAGGAACATTCTCATCTACTGTTCCACGTTCTTCGGTGGTTGTTCTATCTTGGTTGGTCAAGCACAAAAGAGCACATAAACAGATATGTTGCAGATAGCTTATCCTGAATTTGCTAGTTCATTAGGAAAAATGAAGCTGATTTAATATCTTCACTAAAATGAACCTCAATGAATGAATGACACAACTCATTAAACATCAAATGTGGTGAAATCTTCGACGATTGAAATATATCATTTGCTAGGAGTGGCCTAATTCAAAGCCTTTTCTAGTCCCAAACTGATGCAGTTTACACAAGGGAGGAAAAATCGTGCAGAAAACAAACAGAAACACTCATAAAAG</genome_strand>
        <mrna_strand>GACTGTTCAAGGACTGAGGAAAGAATTCAGTT-CGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTTTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCCCA---GTAT--ATTTGTTG-TAA-AAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTTTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAATATAAAAAAAAAAAAAAAAAACTC-GAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E725151" ref_strand="+" ref_description="SGN-E725151 [FC26AH11]">
      <seq>aatcggccgaattgaagaacatcatcacctattgattgattagtctttctaaagctctcttgttatcaacttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79691" stop="20935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78772" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="638" r_length="584" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78771" i_stop="78146" i_length="626">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78145" g_stop="78108" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="676" r_length="38" r_score="0.579"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E725151" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78772"/>
          <exon e_start="78145" e_stop="78108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAGTGTCTGTGTTTATCCTGACCTTGCAATCCATTTACAGAGTCTGCATAGTACTTTATTACCAGTTGATAGTTTGTGTATCTAAAACCTGCCAGTTTTTCACCTTGAATAGTCTGTCAGGTGCCAGCAACAGGGCCACATGATAACTTTGTGAAGCTTATAAGTGTATTAAAAGAGAGATTACCAAACATATACAACAGATAAGAGAAATGAACAGGCTAACAGCTAAGTTACTGGTTTTATCCTCTTCTTTTTTTTTGTTTCTCACTCGTGTCTAGTATCTATATTGGAGTCCGACTATATTCAAGCTGTGGGAGGAACATTCTCATCTACTGTTCCACGTTCTTCGGTGGTTGTTCTATCTTGGTTGGTCAAGCACAAAAGAGCACATAAACAGATATGTTGCAGATAGCTTATCCTGAATTTGCTAGTTCATTAGGAAAAATGAAGCTGATTTAATATCTTCACTAAAATGAACCTCAATGAATGAATGACACAACTCATTAAACATCAAATGTGGTGAAATCTTCGACGATTGAAATATATCATTTGCTAGGAGTGGCCTAATTCAAAGCCTTTTCTAGTCCCAAACTGATGCAGTTTACACAAGGGAGGAAAAATCGTGCAGAAAACAAACAGAAACACTCATAAA</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAACTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E718474" ref_strand="+" ref_description="SGN-E718474 [FC04DB04]">
      <seq>aatcggccgaattggaagaacatcatcatctagtgtttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="80684" stop="20935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80397" g_stop="80342" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79355" g_stop="78772" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="639" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78771" i_stop="78575" i_length="197">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78574" g_stop="78543" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="671" r_length="32" r_score="0.594"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78542" i_stop="78160" i_length="383">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.206" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78159" g_stop="78113" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="718" r_length="47" r_score="0.532"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E718474" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80397" e_stop="80342"/>
          <exon e_start="79355" e_stop="78772"/>
          <exon e_start="78574" e_stop="78543"/>
          <exon e_start="78159" e_stop="78113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTCTTCTCTTGAAGAACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGGAGGTGGTAGGTGTTACGTGGAATTAGTTGAGGTGCGAGAAAGATTTTCTAGATATCATGGTTATCGAAATATGTATAATTTGTTGATCTTGATCATCATTTCATATTGCTTTAATGGTTAGGTAGTTGGACTCTTATATGTTGATCATCTCATGTTTGCTTAGAAGTTATGTAGTTGGACTAGTTGGATTTCCTGATATTGTTGATCATCTTATTGTGTAGTTGGATTTCTCATGTGTTGATCATCTCATATTTGCTTAATATGTGTGTGGGGTTGCATATTTGATATGTTAATGATCTAGTTTTTTGCTAAATATGGATTTTTGCTTTGTTGATCATCTCATTGTGTATAGATGGGTTGTTCATATTGAAGAGGTGTTCTTTTCCTGCATCTTTGTGTGATCAATTTACTAATTTTGATTTCGTTCTTCGATGTAGTTGTATTTTTGATATTTTGATCATCTCATATTGTTGTTTAATACTTGTGTTGTTAGTATCTTGATCATTTCCATATTAAAAGAAGTGTTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAGTGTCTGTGTTTATCCTGACCTTGCAATCCATTTACAGAGTCTGCATAGTACTTTATTACCAGTTGATAGTTTGTGTATCTAAAACCTGCCAGTTTTTCACCTTGAATAGTCTGTCAGGTGCCAGCAACAGGGCCACATGATAACTTTGTGAAGCTTATAAGTGTATTAAAAGAGAGATTACCAAACATATACAACAGATAAGAGAAATGAACAGGCTAACAGCTAAGTTACTGGTTTTATCCTCTTCTTTTTTTTTGTTTCTCACTCGTGTCTAGTATCTATATTGGAGTCCGACTATATTCAAGCTGTGGGAGGAACATTCTCATCTACTGTTCCACGTTCTTCGGTGGTTGTTCTATCTTGGTTGGTCAAGCACAAAAGAGCACATAAACAGATATGTTGCAGATAGCTTATCCTGAATTTGCTAGTTCATTAGGAAAAATGAAGCTGATTTAATATCTTCACTAAAATGAACCTCAATGAATGAATGACACAACTCATTAAACATCAAATGTGGTGAAATCTTCGACGATTGAAATATATCATTTGCTAGGAGTGGCCTAATTCAAAGCCTTTTCTAGTCCCAAACTGATGCAGTTTACACAAGGGAGGAAAAATCGTGCAGAAAACAAACAGAAACACTC</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGGAAGAACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA.....................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E712939" ref_strand="+" ref_description="SGN-E712939 [FB06BA05]">
      <seq>ctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79665" stop="20949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79365" g_stop="78754" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E712939" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79365" e_stop="78754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAGTGT</genome_strand>
        <mrna_strand>CTTTCTAAAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E341361" ref_strand="+" ref_description="SGN-E341361 [cTOE-23-I15]">
      <seq>ttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggcgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagctgtttgaatttgttgttaagaagtgttggttcttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatgtggttttcttaagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78757" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="618" r_length="599" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E341361" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAG</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGCGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGCTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTCTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATGTGGTTTTCTTAAGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E351102" ref_strand="+" ref_description="SGN-E351102 [cTOS-6-P19]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaaagctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78760" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="617" r_length="597" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E351102" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTT-AAGCTAATTGATGT</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAAGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E351157" ref_strand="+" ref_description="SGN-E351157 [cTOS-6-C17]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78761" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="615" r_length="595" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E351157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATG</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E352034" ref_strand="+" ref_description="SGN-E352034 [cTOS-13-O16]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78761" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="615" r_length="595" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E352034" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATG</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E715341" ref_strand="+" ref_description="SGN-E715341 [FB14AA08]">
      <seq>gtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79666" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79367" g_stop="78768" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="613"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E715341" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79367" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>GTCTTTCTAAAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373374" ref_strand="-" ref_description="SGN-E373374 [TUS-31-N11]">
      <seq>ttttaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggttaaggactccggtgcacctggagccaaggagtatgttcatatttgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatttgaaaaaggaattttgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttttcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttttaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaaaaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttttgaattgtgctggttgtactttgtttacagataataataataaatttggtttttttaagctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79663" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79363" g_stop="78768" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="621"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373374" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79363" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>TTTTAAAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGTTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTTGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATTTGAAAAAGGAATTTTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTTTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTTTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAAAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTTTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTTTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373462" ref_strand="-" ref_description="SGN-E373462 [TUS-31-N12]">
      <seq>ttttaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatttgaaaaaggaattttgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttttcatttccttgtgactgctggtgttgtcaaaaaggatcagatcaagattcatggtttttaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaaaaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttttgaattgtgctggttgtactttgtttacagataataataataaatttggtttttttaagctaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79663" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79363" g_stop="78768" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="621"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373462" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373462" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79363" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>TTTTAAAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATTTGAAAAAGGAATTTTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTTTCATTTCCTTGTGACTGCTGGTGTTGTCAAAAAGGATCAGATCAAGATTCATGGTTTTTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAAAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTTTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTTTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E354079" ref_strand="+" ref_description="SGN-E354079 [cTOS-16-O24]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78768" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="608" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="609" polyA_stop="625"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E354079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373375" ref_strand="+" ref_description="SGN-E373375 [TUS-31-N11]">
      <seq>tctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79662" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78768" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="595" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="621"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373463" ref_strand="+" ref_description="SGN-E373463 [TUS-31-N12]">
      <seq>tctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79662" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78768" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="595" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="621"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E712333" ref_strand="+" ref_description="SGN-E712333 [FB04CC04]">
      <seq>gtttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaanaaaaaaaaaaaaaaaaaaaaacccccggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78768" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="609" r_length="588" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="633"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E712333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E357896" ref_strand="+" ref_description="SGN-E357896 [cTOS-24-J23]">
      <seq>agttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttangctanaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79430" stop="78468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79130" g_stop="78768" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="383"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E357896" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79130" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>AGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTANGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E349418" ref_strand="+" ref_description="SGN-E349418 [cTOS-1-N1]">
      <seq>agttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79430" stop="78467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79130" g_stop="78768" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="383"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E349418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79130" e_stop="78768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</genome_strand>
        <mrna_strand>AGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E352157" ref_strand="+" ref_description="SGN-E352157 [cTOS-13-A8]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78769" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="607" r_length="587" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E352157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCT</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E357294" ref_strand="+" ref_description="SGN-E357294 [cTOS-23-M17]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78770" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="606" r_length="586" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E357294" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E292393" ref_strand="+" ref_description="SGN-E292393 [cLET-1-H7]">
      <seq>tctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79662" stop="78470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78770" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="593" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E292393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E350173" ref_strand="+" ref_description="SGN-E350173 [cTOS-4-A8]">
      <seq>gagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79508" stop="78470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79208" g_stop="78770" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E350173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79208" e_stop="78770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</genome_strand>
        <mrna_strand>GAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E351540" ref_strand="+" ref_description="SGN-E351540 [cTOS-12-G16]">
      <seq>gagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79508" stop="78470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79208" g_stop="78770" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E351540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79208" e_stop="78770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</genome_strand>
        <mrna_strand>GAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E351031" ref_strand="+" ref_description="SGN-E351031 [cTOS-6-A18]">
      <seq>tctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaagctaaagactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaacgaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggagttgtcaagaaggatcagatcaagattcatggtttctaagtcgctggctatttcgagttgctgaagcatatatagtaatataatcacaggtggttgaatttgttgataagaagagttggcttttgttaatgcccatgatatcttgccatgcgtttctttcagaattgtgctggttgtactttgtttacagatataataataaatttgggtttcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79662" stop="78471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78771" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="591" r_length="584" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E351031" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAG</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAAGCTAAAGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAACGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGAGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGCTGGCTATTTCGAGTTGCTGAAGCATATATAGTAATATAATCACAGGTGGTTGAATTTGTTGATAAGAAGAGTTGGCTTTTGTTAATGCCCATGATATCTTGCCATGCGTTTCTTTCAGAATTGTGCTGGTTGTACTTTGTTTACAGAT-ATAATAATAAATTTGGGTTTCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E724332" ref_strand="+" ref_description="SGN-E724332 [FC23DB08]">
      <seq>tgatcatcatctagtgtttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaaaaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="80675" stop="78473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80377" g_stop="80342" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79355" g_stop="78772" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="620" r_length="584" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="652"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E724332" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80377" e_stop="80342"/>
          <exon e_start="79355" e_stop="78772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGGAGGTGGTAGGTGTTACGTGGAATTAGTTGAGGTGCGAGAAAGATTTTCTAGATATCATGGTTATCGAAATATGTATAATTTGTTGATCTTGATCATCATTTCATATTGCTTTAATGGTTAGGTAGTTGGACTCTTATATGTTGATCATCTCATGTTTGCTTAGAAGTTATGTAGTTGGACTAGTTGGATTTCCTGATATTGTTGATCATCTTATTGTGTAGTTGGATTTCTCATGTGTTGATCATCTCATATTTGCTTAATATGTGTGTGGGGTTGCATATTTGATATGTTAATGATCTAGTTTTTTGCTAAATATGGATTTTTGCTTTGTTGATCATCTCATTGTGTATAGATGGGTTGTTCATATTGAAGAGGTGTTCTTTTCCTGCATCTTTGTGTGATCAATTTACTAATTTTGATTTCGTTCTTCGATGTAGTTGTATTTTTGATATTTTGATCATCTCATATTGTTGTTTAATACTTGTGTTGTTAGTATCTTGATCATTTCCATATTAAAAGAAGTGTTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA</genome_strand>
        <mrna_strand>TGATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAAAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E724922" ref_strand="+" ref_description="SGN-E724922 [FC25CB10]">
      <seq>gatcatcatctagtgtttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttgttaatgcccatgatatcttgccatgggtttctttctgaattgtgctggttgtactttgtttacagataataataataaatttggttttcttannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="80675" stop="78473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80376" g_stop="80342" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79355" g_stop="78772" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="619" r_length="584" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="637" polyA_stop="687"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E724922" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80376" e_stop="80342"/>
          <exon e_start="79355" e_stop="78772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATCATCTAGTGTTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGGAGGTGGTAGGTGTTACGTGGAATTAGTTGAGGTGCGAGAAAGATTTTCTAGATATCATGGTTATCGAAATATGTATAATTTGTTGATCTTGATCATCATTTCATATTGCTTTAATGGTTAGGTAGTTGGACTCTTATATGTTGATCATCTCATGTTTGCTTAGAAGTTATGTAGTTGGACTAGTTGGATTTCCTGATATTGTTGATCATCTTATTGTGTAGTTGGATTTCTCATGTGTTGATCATCTCATATTTGCTTAATATGTGTGTGGGGTTGCATATTTGATATGTTAATGATCTAGTTTTTTGCTAAATATGGATTTTTGCTTTGTTGATCATCTCATTGTGTATAGATGGGTTGTTCATATTGAAGAGGTGTTCTTTTCCTGCATCTTTGTGTGATCAATTTACTAATTTTGATTTCGTTCTTCGATGTAGTTGTATTTTTGATATTTTGATCATCTCATATTGTTGTTTAATACTTGTGTTGTTAGTATCTTGATCATTTCCATATTAAAAGAAGTGTTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA</genome_strand>
        <mrna_strand>GATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E352892" ref_strand="+" ref_description="SGN-E352892 [cTOS-11-J9]">
      <seq>tctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacagttgtttgaatttgttgttaagaagtgttggtttttggtaatgcccatgatatcttgccatgggtttctttctgaattgtgctggntggactttggttacagataataataataaatttgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79662" stop="78479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78778" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="585" r_length="578" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E352892" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTT</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGGTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGNTGGACTTTGGTTACAGATAATAATAATAAATTTGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E287570" ref_strand="+" ref_description="SGN-E287570 [cLES-9-D10]">
      <seq>ttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacaaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78901" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="474" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E287570" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAG</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACAAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E295605" ref_strand="+" ref_description="SGN-E295605 [cLET-23-P16]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcacgataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggtgttgtcaagaaggatcagatcaagattcatggtttctaagtcgttggctatttcgagttgttgaagcatatatagtaatataatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="78903" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="473" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E295605" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="78903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCAC</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCACGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E288499" ref_strand="+" ref_description="SGN-E288499 [cLES-8-D11]">
      <seq>aaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatatgctgaggctaaggactccggagcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgactgctggagttgtcaagaaggatcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79657" stop="78671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79522" g_stop="79518" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79517" i_stop="79356" i_length="162">
            <donor d_prob="0.680" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79355" g_stop="78971" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="390" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E288499" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79522" e_stop="79518"/>
          <exon e_start="79355" e_stop="78971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGTGTTCTTTTCCTGCATCTTTGTGTGATCAATTTACTAATTTTGATTTCGTTCTTCGATGTAGTTGTATTTTTGATATTTTGATCATCTCATATTGTTGTTTAATACTTGTGTTGTTAGTATCTTGATCATTTCCATATTAAAAGAAGTGTTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGA</genome_strand>
        <mrna_strand>AAAAG..................................................................................................................................................................CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATATGCTGAGGCTAAGGACTCCGGAGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGAGTTGTCAAGAAGGATCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E307964" ref_strand="+" ref_description="SGN-E307964 [cLEZ-7-H12]">
      <seq>gagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaagactccggtgcacctggagccaaagagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaagactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaagataaagaacttggcaaagtgatacaacttcaaggtgatcaaaggaagaatgtttctcatttccttgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79620" stop="78697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79320" g_stop="78997" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E307964" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79320" e_stop="78997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGAC</genome_strand>
        <mrna_strand>GAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAAGACTCCGGTGCACCTGGAGCCAAAGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAAGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAAGATAAAGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E354067" ref_strand="+" ref_description="SGN-E354067 [cTOS-16-M4]">
      <seq>tttgattagtctttctaaagctctcttgttatcaatttacctagcttcagtttcggagcgtgagaagttctcttcaagctatttacatggttgatatcgacatccagatcccatctgctttcgatccatttgctgaggctaaggactccggtgcacctggagccaaggagtatgttcatattcgtatacaacaaaggaatggaaagaaaagcttgacgactgttcaaggactgaggaaagaattcagttacgaaaaaatcctcaaagatctgaaaaaggaattctgttgcaacgggaacgttgtgcaggataaggaacttggcaaagtgatacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="79671" stop="78740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79355" g_stop="79040" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="336" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E354067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79355" e_stop="79040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAAC</genome_strand>
        <mrna_strand>CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E317865" ref_strand="+" ref_description="SGN-E317865 [cTOA-30-D16]">
      <seq>tttgattagtctttctaaaggttagtttattcctctattattttcagttttaagtaaattttggttttttttgtgtgtgtagtttatcttgctagtagagtcatgttggtgttttttgtttttgttttttggttgattagacatttttaactttgtgggttgttgggttgtggtctgtttgtggctttagtcaatcaaagtttggattttgatacttggatcatctatgttatagttaaagatggtctttttcagcttaaagttagttggttttttttttaactttgttaaatttggactttgcttgtatgtgcagttttagtcaattaaagttaggatctttggattctctatggatgattgcaattttatttagttgggaacttttgatatgtttgatcttgatgtgttctcatctctgatctagttgtggtagacatggttatcttgtacctgtgggcggtgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="80661" stop="79592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80361" g_stop="79892" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E317865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80361" e_stop="79892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGG</genome_strand>
        <mrna_strand>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATGGTTATCTTGTACCTGTGGGCGGTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E379726" ref_strand="+" ref_description="SGN-E379726 [TUS-3-M11]">
      <seq>ttaggtcgaaaattaaacccaaaaaaaaaaaagaaaaggaaacaagtctccggcgaagaaattcccaattcaccccgtcggcgtcgaacctgaatcagcttctcctttgaattcaatcagttgatggacaaagcaaaatcccttgaattcatcgctgtcgtatagaattctctggtcaagtttgacaagaatcctaattcagaagctaaaatttacagcccttctttacaagcatctgtattagctattatgaatatgaagaaaaagcctcttagcttggttagcttgtgtcttggagttattggtagacattttgaggatatcattgaagacctcgccgagatagctgctattccgtccacaatgaagatggcacttgtggcaattgcaagaaggagaaggttattgaatgacgatgtcattgttgcattggctgatagctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcggagtgagacacagctcgtagatgcctccgtttcttgaaacaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="86745" stop="90385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87045" g_stop="87282" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87958" g_stop="88088" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="369" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88634" g_stop="88803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="539" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89295" g_stop="89372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90026" g_stop="90085" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="675" r_length="58" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E379726" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87045" e_stop="87282"/>
          <exon e_start="87958" e_stop="88088"/>
          <exon e_start="88634" e_stop="88803"/>
          <exon e_start="89295" e_stop="89372"/>
          <exon e_start="90026" e_stop="90085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTGGTATGTTTCTCCGGTGAAACTATTTCCGGTAGACCTTTTATATGCATAATTTTCTGCGAAAGGTATCTATCTACAGAAAGAATAGTGGGTTCGGAGTATTAATTGATTACATCTATTATTCTGTGTGATTTGGAATATGATTTTGTTAATTTTTGGGAAATATTGTTTGGTGTCGTCACTAGTAGTAGAAAACAAGACTTGAATCAATTCAGTGCAATTGTGAAACAAATTCGATTCCAACACAACCACTTATATATATTATTTACTGAATACTAGTTACAATGTAGAATACGTACAACAAAATAATAATAAACTAACTAGGGAGAGATTAACGGAGAAAGAAGTAACCAGAAAGGGATGAGATACAAGACCATAAAAAGGAGATGAGAGGATCTGAAAGTGAAAGCTTCGACATAATAGTTGTCATAACCGTTCTTCTAACTCCTAGTCCTTTTTAACAAAGTATAAAATGGGCCTGGATCGCGATTAAAAATCTCTAATTTCCCGTATGTCCTTACAGGTTCAGTTTCGTTCACAAGAAATTGTTTTGATTTTGTTGTGAGCAGAACTCCAGATGTTTGTTCATTTGTTCTGTTTTGTGGATCACATGAAGTTCTTGTAGTTGTGGGGCTTTTAATTGTGATGAGTTAATGGAGTTTGATGGTTTTGTTACAGTATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAGGTAAAAGTTTGTATGCCTGGTTTTATACATATTATTGGTTGTAGTTATTCTGAAAATGTACCCTTTGATTGATGCAAATACTGCTAGATTTAGTTGGCAATCGTGTACCCGAGAACTTTTGCTTCTTAACTTTTGGAGGCTTTTGTGCTTCCATTAAATGTATATTCTTCTTCAATTCCCTTAAGATAATAAGGGTTTCGATCCATAAAATGGCATACTATTGATGTCCTATTCCTAGTCACGCAAGTTTAGTTTGTTGCAATTTTATTACACCACTATATTAAGGGTGAACTTAATAGTGAAGGAATGTTTTCTTGAAATCTTTCATCAAACTTTTGACTAAAGACTTGCTTCTTGGCTATCAAAGAATACATTATTTTTTTCTTCGGTGGTGGCAGTGAAGGTTAAATAAAAAGTAAAACAAAGCTGTCAATCCATGCTATCTTGCAAAACTATTTAATGAATGGAAAATGTGGATTACATCCTAGCTTGTCCTTTTGACTCTGATTTTTCTGGTAACTGAAACAATCTGTTTTAATTGTTAGATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGGGTAGGTTTTCTTTCTTAAATCAAGTCACTTTTTTCAGTCATGAAGCATAATACATCGTGTGTAACAATGAAAAAATCTGGTCCATTGGACTTCGCCTAAGCTAATATTTCGTAAATGACTGTCTGGTTAACCTCGAGTCCACTGATGCAACCATTTGGGTTTCTTATAACTTGCTTAGATTCTGTGAACCTTTCCACGTTAAATAATGTTTTTTTTCTAATGAGTACATTCAGTATTAAGATTCTTCTCAAATATGTGCGTAGTGTTAGCATTCATTGGATATTTTTTAGATATTTGAACTTGCCTTACTTAAGGATACTCAAATTTGATGCATTTGTTTTTTCTGTGTGCATATAGTGTAAGCATTCGTTTACTATTTTTTAAGATTCCTGTGGATAAAGTAAAATAGTATATGCTGTTATTGGGGATAGAACACACAACCTCAAGCTATATTTAGGAAAGAACCTTGCATCTTTCAACTATTTACACAAATGTCATTTGAAGTTTTTTCTATGGAAGAGATCTTTTGTAAAAATCTAGGTTCATCATATATTTGCTGGGTAAAATATATTTCAAAGATATACACTCTCAACAAATAAGGAAAACGTAGAAATTAACCACATAACAAAAATGAATCAAATTTAATGTTGCAGAGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACT</genome_strand>
        <mrna_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCCCTCGGAGTGAG-ACACAGCTCGTAGATGCCTCCGTTTCTTGAAA-CAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E379269" ref_strand="+" ref_description="SGN-E379269 [TUS-3-L12]">
      <seq>ttaggtcgaaaattaaacccaaaaaaaaaaaagaaaaggaaacaagtctccggcgaaaaaattcccaattcaccccgtcggcgtcgaacctgaatcagcttctcctttgaattcaatcagttgatggacaaagcaaaatcccttgaattcatcgctgtcgtataaaattctctggtcaagtttgacaagaatcctaattcagaagctaaaatttacagcccttctttacaagcatctgtattagctattatgaatatgaagaaaaagcctcttagcttggttagcttgtgtcttggagttattggtaaacattttgaggatatcattgaagacctcgccgagatagctgctattccgtccacaatgaagatggcacttgtggcaattgcaagaaggagaaggttattgaatgacgatgtcattgttgcattggctgatagctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="86745" stop="89672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87045" g_stop="87282" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87958" g_stop="88088" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="369" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88634" g_stop="88803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="539" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89295" g_stop="89372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E379269" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87045" e_stop="87282"/>
          <exon e_start="87958" e_stop="88088"/>
          <exon e_start="88634" e_stop="88803"/>
          <exon e_start="89295" e_stop="89372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTGGTATGTTTCTCCGGTGAAACTATTTCCGGTAGACCTTTTATATGCATAATTTTCTGCGAAAGGTATCTATCTACAGAAAGAATAGTGGGTTCGGAGTATTAATTGATTACATCTATTATTCTGTGTGATTTGGAATATGATTTTGTTAATTTTTGGGAAATATTGTTTGGTGTCGTCACTAGTAGTAGAAAACAAGACTTGAATCAATTCAGTGCAATTGTGAAACAAATTCGATTCCAACACAACCACTTATATATATTATTTACTGAATACTAGTTACAATGTAGAATACGTACAACAAAATAATAATAAACTAACTAGGGAGAGATTAACGGAGAAAGAAGTAACCAGAAAGGGATGAGATACAAGACCATAAAAAGGAGATGAGAGGATCTGAAAGTGAAAGCTTCGACATAATAGTTGTCATAACCGTTCTTCTAACTCCTAGTCCTTTTTAACAAAGTATAAAATGGGCCTGGATCGCGATTAAAAATCTCTAATTTCCCGTATGTCCTTACAGGTTCAGTTTCGTTCACAAGAAATTGTTTTGATTTTGTTGTGAGCAGAACTCCAGATGTTTGTTCATTTGTTCTGTTTTGTGGATCACATGAAGTTCTTGTAGTTGTGGGGCTTTTAATTGTGATGAGTTAATGGAGTTTGATGGTTTTGTTACAGTATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAGGTAAAAGTTTGTATGCCTGGTTTTATACATATTATTGGTTGTAGTTATTCTGAAAATGTACCCTTTGATTGATGCAAATACTGCTAGATTTAGTTGGCAATCGTGTACCCGAGAACTTTTGCTTCTTAACTTTTGGAGGCTTTTGTGCTTCCATTAAATGTATATTCTTCTTCAATTCCCTTAAGATAATAAGGGTTTCGATCCATAAAATGGCATACTATTGATGTCCTATTCCTAGTCACGCAAGTTTAGTTTGTTGCAATTTTATTACACCACTATATTAAGGGTGAACTTAATAGTGAAGGAATGTTTTCTTGAAATCTTTCATCAAACTTTTGACTAAAGACTTGCTTCTTGGCTATCAAAGAATACATTATTTTTTTCTTCGGTGGTGGCAGTGAAGGTTAAATAAAAAGTAAAACAAAGCTGTCAATCCATGCTATCTTGCAAAACTATTTAATGAATGGAAAATGTGGATTACATCCTAGCTTGTCCTTTTGACTCTGATTTTTCTGGTAACTGAAACAATCTGTTTTAATTGTTAGATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG</genome_strand>
        <mrna_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAAAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAAAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAAACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E207897" ref_strand="+" ref_description="SGN-E207897 [cLEC-34-I6]">
      <seq>ttaggtcgaaaattaaacccaaaaaaaaaaaagaaaaggaaacaagtctccggcgaagaaattcccaattcaccccgtcggcgtcgaacctgaatcagcttctcctttgaattcaatcagttgatggacaaagcaaaatcccttgaattcatcgctgtcgtatagaattctctggtcaagtttgacaagaatcctaattcagaagctaaaatttacagcccttctttacaagcatctgtattagctattatgaatatgaagaaaaagcctcttagcttggttagcttgtgtcttggagttattggtagacattttgaggatatcattgaagacctcgccgagatagctgctattccgtccacaatgaagatggcacttgtggcaattgcaagaaggagaaggttattgaatgacgatgtcattgttgcattggctgatagctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="86745" stop="89672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87045" g_stop="87282" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87958" g_stop="88088" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="369" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88634" g_stop="88803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="539" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89295" g_stop="89372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="617" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E207897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87045" e_stop="87282"/>
          <exon e_start="87958" e_stop="88088"/>
          <exon e_start="88634" e_stop="88803"/>
          <exon e_start="89295" e_stop="89372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTGGTATGTTTCTCCGGTGAAACTATTTCCGGTAGACCTTTTATATGCATAATTTTCTGCGAAAGGTATCTATCTACAGAAAGAATAGTGGGTTCGGAGTATTAATTGATTACATCTATTATTCTGTGTGATTTGGAATATGATTTTGTTAATTTTTGGGAAATATTGTTTGGTGTCGTCACTAGTAGTAGAAAACAAGACTTGAATCAATTCAGTGCAATTGTGAAACAAATTCGATTCCAACACAACCACTTATATATATTATTTACTGAATACTAGTTACAATGTAGAATACGTACAACAAAATAATAATAAACTAACTAGGGAGAGATTAACGGAGAAAGAAGTAACCAGAAAGGGATGAGATACAAGACCATAAAAAGGAGATGAGAGGATCTGAAAGTGAAAGCTTCGACATAATAGTTGTCATAACCGTTCTTCTAACTCCTAGTCCTTTTTAACAAAGTATAAAATGGGCCTGGATCGCGATTAAAAATCTCTAATTTCCCGTATGTCCTTACAGGTTCAGTTTCGTTCACAAGAAATTGTTTTGATTTTGTTGTGAGCAGAACTCCAGATGTTTGTTCATTTGTTCTGTTTTGTGGATCACATGAAGTTCTTGTAGTTGTGGGGCTTTTAATTGTGATGAGTTAATGGAGTTTGATGGTTTTGTTACAGTATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAGGTAAAAGTTTGTATGCCTGGTTTTATACATATTATTGGTTGTAGTTATTCTGAAAATGTACCCTTTGATTGATGCAAATACTGCTAGATTTAGTTGGCAATCGTGTACCCGAGAACTTTTGCTTCTTAACTTTTGGAGGCTTTTGTGCTTCCATTAAATGTATATTCTTCTTCAATTCCCTTAAGATAATAAGGGTTTCGATCCATAAAATGGCATACTATTGATGTCCTATTCCTAGTCACGCAAGTTTAGTTTGTTGCAATTTTATTACACCACTATATTAAGGGTGAACTTAATAGTGAAGGAATGTTTTCTTGAAATCTTTCATCAAACTTTTGACTAAAGACTTGCTTCTTGGCTATCAAAGAATACATTATTTTTTTCTTCGGTGGTGGCAGTGAAGGTTAAATAAAAAGTAAAACAAAGCTGTCAATCCATGCTATCTTGCAAAACTATTTAATGAATGGAAAATGTGGATTACATCCTAGCTTGTCCTTTTGACTCTGATTTTTCTGGTAACTGAAACAATCTGTTTTAATTGTTAGATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG</genome_strand>
        <mrna_strand>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E709149" ref_strand="+" ref_description="SGN-E709149 [FA42DD01]">
      <seq>ccgtaaacaagtctccggcgaagaaattcccaattcaccccgtcggcgtcgaacctgaatcagcttctcctttgaattcaatcagttgatggacaaagcaaaatcccttgaattcatcgctgtcgtatagaattctctggtcaagtttgacaagaatcctaattcagaagctaaaatttacagcccttctttacaagcatctgtattagctattatgaatatgaagaaaaagcctcttagcttggttagcttgtgtcttggagttattggtagacattttgaggatatcattgaagacctcgccgagatagctgctattccgtccacaatgaagatggcacttgtggcaattgcaagaaggagaaggttattgaatgacgatgtcattgttgcattggctgatagctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcggagtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="86782" stop="90479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87080" g_stop="87282" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87958" g_stop="88088" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="334" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88634" g_stop="88803" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="504" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89295" g_stop="89372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="582" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90026" g_stop="90170" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="727" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E709149" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87080" e_stop="87282"/>
          <exon e_start="87958" e_stop="88088"/>
          <exon e_start="88634" e_stop="88803"/>
          <exon e_start="89295" e_stop="89372"/>
          <exon e_start="90026" e_stop="90170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTGGTATGTTTCTCCGGTGAAACTATTTCCGGTAGACCTTTTATATGCATAATTTTCTGCGAAAGGTATCTATCTACAGAAAGAATAGTGGGTTCGGAGTATTAATTGATTACATCTATTATTCTGTGTGATTTGGAATATGATTTTGTTAATTTTTGGGAAATATTGTTTGGTGTCGTCACTAGTAGTAGAAAACAAGACTTGAATCAATTCAGTGCAATTGTGAAACAAATTCGATTCCAACACAACCACTTATATATATTATTTACTGAATACTAGTTACAATGTAGAATACGTACAACAAAATAATAATAAACTAACTAGGGAGAGATTAACGGAGAAAGAAGTAACCAGAAAGGGATGAGATACAAGACCATAAAAAGGAGATGAGAGGATCTGAAAGTGAAAGCTTCGACATAATAGTTGTCATAACCGTTCTTCTAACTCCTAGTCCTTTTTAACAAAGTATAAAATGGGCCTGGATCGCGATTAAAAATCTCTAATTTCCCGTATGTCCTTACAGGTTCAGTTTCGTTCACAAGAAATTGTTTTGATTTTGTTGTGAGCAGAACTCCAGATGTTTGTTCATTTGTTCTGTTTTGTGGATCACATGAAGTTCTTGTAGTTGTGGGGCTTTTAATTGTGATGAGTTAATGGAGTTTGATGGTTTTGTTACAGTATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAGGTAAAAGTTTGTATGCCTGGTTTTATACATATTATTGGTTGTAGTTATTCTGAAAATGTACCCTTTGATTGATGCAAATACTGCTAGATTTAGTTGGCAATCGTGTACCCGAGAACTTTTGCTTCTTAACTTTTGGAGGCTTTTGTGCTTCCATTAAATGTATATTCTTCTTCAATTCCCTTAAGATAATAAGGGTTTCGATCCATAAAATGGCATACTATTGATGTCCTATTCCTAGTCACGCAAGTTTAGTTTGTTGCAATTTTATTACACCACTATATTAAGGGTGAACTTAATAGTGAAGGAATGTTTTCTTGAAATCTTTCATCAAACTTTTGACTAAAGACTTGCTTCTTGGCTATCAAAGAATACATTATTTTTTTCTTCGGTGGTGGCAGTGAAGGTTAAATAAAAAGTAAAACAAAGCTGTCAATCCATGCTATCTTGCAAAACTATTTAATGAATGGAAAATGTGGATTACATCCTAGCTTGTCCTTTTGACTCTGATTTTTCTGGTAACTGAAACAATCTGTTTTAATTGTTAGATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGGGTAGGTTTTCTTTCTTAAATCAAGTCACTTTTTTCAGTCATGAAGCATAATACATCGTGTGTAACAATGAAAAAATCTGGTCCATTGGACTTCGCCTAAGCTAATATTTCGTAAATGACTGTCTGGTTAACCTCGAGTCCACTGATGCAACCATTTGGGTTTCTTATAACTTGCTTAGATTCTGTGAACCTTTCCACGTTAAATAATGTTTTTTTTCTAATGAGTACATTCAGTATTAAGATTCTTCTCAAATATGTGCGTAGTGTTAGCATTCATTGGATATTTTTTAGATATTTGAACTTGCCTTACTTAAGGATACTCAAATTTGATGCATTTGTTTTTTCTGTGTGCATATAGTGTAAGCATTCGTTTACTATTTTTTAAGATTCCTGTGGATAAAGTAAAATAGTATATGCTGTTATTGGGGATAGAACACACAACCTCAAGCTATATTTAGGAAAGAACCTTGCATCTTTCAACTATTTACACAAATGTCATTTGAAGTTTTTTCTATGGAAGAGATCTTTTGTAAAAATCTAGGTTCATCATATATTTGCTGGGTAAAATATATTTCAAAGATATACACTCTCAACAAATAAGGAAAACGTAGAAATTAACCACATAACAAAAATGAATCAAATTTAATGTTGCAGAGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG</genome_strand>
        <mrna_strand>CCGTAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E702827" ref_strand="+" ref_description="SGN-E702827 [FA19DC03]">
      <seq>ctcctggaaaatactggacttgtctggttcagatgtttcggattttggcctatcacaagtggttaaaacatgcaaccatctgcaagcagttgatataaggccacgctttcacctatttcagtcctttttccgctgctcaacttaaatttggttttgaaatgtaaacctaaatatgaacatccattgtcacagtcgctgcagcaatctcacatcagccagtgtatcagaactcttgcagaactgccggtctctggaaatattgagatggggaggctgccctcggagtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaaggaccagctggagattctgtctgaagaatgcccacgagtcatagtaaatccaaagccatcgccactcggttacagggggcttgatatacctagagaagcaagactagatgtttcattagatgatcccattgttgaagatattgaccccaaaacctgggcagtttctagatttgtacctagagcatcaccatcatcagtttcaagatcagaagatttgcccattgcggagaagtttagacttgcatttcttgagagagatactagactagcaccaaagcgagcaaagaatgcaagacaacaccaacgacgtgcagaaaaggaatgggtaacgatgaatagtagggcaaaagcagtagcacttgcctcactggcaagcaaatccttgaacatccggaactgaaaataaatgttttacttatacgaaaccccgttttgatctctgtcaatcaacaatacnaaatgcttctgtatataactctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="88405" stop="91400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88705" g_stop="88803" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88804" i_stop="89201" i_length="398">
            <donor d_prob="0.493" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89202" g_stop="89372" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="270" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90026" g_stop="90170" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="415" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90606" g_stop="91100" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="911" r_length="496" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E702827" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88705" e_stop="88803"/>
          <exon e_start="89202" e_stop="89372"/>
          <exon e_start="90026" e_stop="90170"/>
          <exon e_start="90606" e_stop="91100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAGGTGTTGCATATTAATCATTTCCTATGTCGAGGGTTTCTTTCTTTTTAGAAACAACATGCATGTCAGACAAGATTTTCTGGTTTAACTTCCGTATTGGATATGCATGGTGCACCTACTATATCTTGCTACATGACACCTCTCATTTGCACTGAAGGCATACTAAATTTTTTGTCCTGTGTCAAAATTCTGCAAATAGTAAGCAGTCGTCACTACTAGTAAATTAAATCAAGTAGTGCGTGGCTTAAAAATTATGTTATGAGGCGTTAACTCCCATTTTCTACTCTTCTTGCTTTCTCTAGCTGGTTCTTGATCTCGTACTAGTGTAAAAAAAAAAAGATTATACCAAGTGCTTTTCTGGGTTCACTTTTCTTTAAAGTTGCATTACACACTTTGTGCAGGCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGGGTAGGTTTTCTTTCTTAAATCAAGTCACTTTTTTCAGTCATGAAGCATAATACATCGTGTGTAACAATGAAAAAATCTGGTCCATTGGACTTCGCCTAAGCTAATATTTCGTAAATGACTGTCTGGTTAACCTCGAGTCCACTGATGCAACCATTTGGGTTTCTTATAACTTGCTTAGATTCTGTGAACCTTTCCACGTTAAATAATGTTTTTTTTCTAATGAGTACATTCAGTATTAAGATTCTTCTCAAATATGTGCGTAGTGTTAGCATTCATTGGATATTTTTTAGATATTTGAACTTGCCTTACTTAAGGATACTCAAATTTGATGCATTTGTTTTTTCTGTGTGCATATAGTGTAAGCATTCGTTTACTATTTTTTAAGATTCCTGTGGATAAAGTAAAATAGTATATGCTGTTATTGGGGATAGAACACACAACCTCAAGCTATATTTAGGAAAGAACCTTGCATCTTTCAACTATTTACACAAATGTCATTTGAAGTTTTTTCTATGGAAGAGATCTTTTGTAAAAATCTAGGTTCATCATATATTTGCTGGGTAAAATATATTTCAAAGATATACACTCTCAACAAATAAGGAAAACGTAGAAATTAACCACATAACAAAAATGAATCAAATTTAATGTTGCAGAGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGGGTATGAGTTCTATTTCCTGTTCAAGCTTGCAAAACTTCATCTTTGTTATTAAGAGTTATGCATGTGACTTATGAACTGGAAGTCTGGAATAACAAATAGATTGTTTTTCTTGTAAATTCCTAAAACACATTAAATGTTTAACTTCACATAATAACATTTCTATTTATAAATGTAAGTATTAGTTTCAGTGTCAGACATTTATTTGCAATACATCAAGTTGGATGCTGATGGAAAAACTTTATTTATCAATATGAAGATTTGAGCTGTTTAACTCAAAGTTCTAAAGTATACCAATGCAGTTTTCACTTTTTAACCATGTATTTGATGATTTGGGGCAAACCCTGTCCAAGTCAACCTGCAATTTTCTTGTTGCAACTTTGGCTAAGAGTAAGGAGTAGTCTCATGAATTCAGACTAATATCTAATCCTTTTGCAGCCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATAT-ACTCTTTC</genome_strand>
        <mrna_strand>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................GCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCCGTTTTGATCTCTGTCAATCAACAATACNAAATGCTTCTGTATATAACTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E379147" ref_strand="-" ref_description="SGN-E379147 [TUS-3-L12]">
      <seq>gaaatattgagatggggaggctgccctcggagtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaaggaccagctggagattctgtctgaagaatgcccacgagtcatattaaatccaaagccatcgccactcggttacagggggcttgatatacctagagaagcaagactagatgtttcattagatgatcccattgttgaagatattgaccccaaaacctgggcagtttctagatttgtacctagagcatcaccatcatcagtttcaagatcagaagatttgcccattgcggagaagtttagactgcatttcttgagagagatactagactagcaccaaagcgagcaaagaatgcaagacaacaccaacgacgtgcagaaaaggaatgggtaacgatgaatagtagggcaaaagcagtagcacttgcctcactggcaagcaaatccttgaacatccggaactgaaaataaatgttttacttatacgaaacccgtttttgatctctgtcagtcaacaatacaaaatgcttctgtatatactctttcaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="89710" stop="91405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90026" g_stop="90170" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="162" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90606" g_stop="91105" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="661" r_length="499" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E379147" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379147" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90026" e_stop="90170"/>
          <exon e_start="90606" e_stop="91105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGGGTATGAGTTCTATTTCCTGTTCAAGCTTGCAAAACTTCATCTTTGTTATTAAGAGTTATGCATGTGACTTATGAACTGGAAGTCTGGAATAACAAATAGATTGTTTTTCTTGTAAATTCCTAAAACACATTAAATGTTTAACTTCACATAATAACATTTCTATTTATAAATGTAAGTATTAGTTTCAGTGTCAGACATTTATTTGCAATACATCAAGTTGGATGCTGATGGAAAAACTTTATTTATCAATATGAAGATTTGAGCTGTTTAACTCAAAGTTCTAAAGTATACCAATGCAGTTTTCACTTTTTAACCATGTATTTGATGATTTGGGGCAAACCCTGTCCAAGTCAACCTGCAATTTTCTTGTTGCAACTTTGGCTAAGAGTAAGGAGTAGTCTCATGAATTCAGACTAATATCTAATCCTTTTGCAGCCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCA</genome_strand>
        <mrna_strand>AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATATTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGAC-TGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E379587" ref_strand="-" ref_description="SGN-E379587 [TUS-3-M11]">
      <seq>agtgagaacacagctcgtagatgcctccgtttcttgaaaccaatactagagaacgtggaaggagattcttgggaggaacttgataccttggaaatagctcatggtgcgacatccttgcgttggcttttatggccaaaagttgaaaaggaccagctggagattctgtctgaagaatgcccacgagtcatattaaatccaaagccatcgccactcggttacagggggcttgatatacctagagaagcaagactagatgtttcattagatgatcccattgttgaagatattgaccccaaaacctgggcagtttctagatttgtacctagagcatcaccatcatcagtttcaagatcagaagatttgcccattgcggagaagtttagactgcatttcttgagagagatactagactagcaccaaagcgagcaaagaatgcaagacaacaccaacgacgtgcagaaaaggaatgggtaacgatgaatagtagggcaaaagcagtagcacttgcctcactggcaagcaaatccttgaacatccggaactgaaaataaatgttttacttatacgaaacccgtttttgatctctgtcagtcaacaatacaaaatgcttctgtatatactctttcaggcaaggacgccgtcaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="+" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="89739" stop="91423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90039" g_stop="90170" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90606" g_stop="91123" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="649" r_length="517" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="+" ref_id="SGN-E379587" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379587" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90039" e_stop="90170"/>
          <exon e_start="90606" e_stop="91123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGGGTATGAGTTCTATTTCCTGTTCAAGCTTGCAAAACTTCATCTTTGTTATTAAGAGTTATGCATGTGACTTATGAACTGGAAGTCTGGAATAACAAATAGATTGTTTTTCTTGTAAATTCCTAAAACACATTAAATGTTTAACTTCACATAATAACATTTCTATTTATAAATGTAAGTATTAGTTTCAGTGTCAGACATTTATTTGCAATACATCAAGTTGGATGCTGATGGAAAAACTTTATTTATCAATATGAAGATTTGAGCTGTTTAACTCAAAGTTCTAAAGTATACCAATGCAGTTTTCACTTTTTAACCATGTATTTGATGATTTGGGGCAAACCCTGTCCAAGTCAACCTGCAATTTTCTTGTTGCAACTTTGGCTAAGAGTAAGGAGTAGTCTCATGAATTCAGACTAATATCTAATCCTTTTGCAGCCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAATGCCGCCGTCAAAGAGT</genome_strand>
        <mrna_strand>AGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATATTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGAC-TGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAAGGACGCCGTCAAAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E706720" ref_strand="+" ref_description="SGN-E706720 [FA30DA02]">
      <seq>gaaaatactgactgagattttgaagaatgtcgaaattgtgggcgaggttttcaggtttattcagcagcaagaattttgtagggattgataaagtaggcaatcgctattttaaaaatattgaggagcttgatggtgtcatgaaggaaaagagatgggtgacatttaaaggagaggaagatccaacctccattccagttgaatggatatgttggttgaatggacagcggaagaatgctccaactccagaggaaatggctgagttggaggccagaagggaatttgttaagcttaatattgctcgtctcaagaaggaagaggaggaaagaatggccaaagaaggcaagaggaaagccacaaacattggtaaagctgatggtccagatttaaaaagtttcgttcaacaatttccggatgcttcaaaaggtgatacaaaggcagaagcctctgatacacagcatgaaaaaaggtcgtcagagccaactggtaccggtgaatcctttagaccaggaacatggcaacctcctacctgagatcactcagactcaacggggaacctttagttttctcttgatgttctatttcaaggacatcagatgactgcagaagttgaatacaaggaactaacgccacgcaatgtggcagtctcattctttctcctcacggatgtttgccccgaattattgtttctgtccttcctgttacttgtttcagggtcatttcatttttgataggactacaccaactttcggatgattaatcgtcaattgtcaaatctgcactatgctcctttaccctttgatgtactgtaaagttctgctatattgaccattgataagatcttaccagaagaaaataacaacataccctgtgtaatcccataaattgggatctcgggaaagtaagtgtatccatatcgtaaagaggttggtttccataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="97637" stop="92336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97337" g_stop="97200" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97199" i_stop="96420" i_length="780">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96419" g_stop="96363" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="195" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96362" i_stop="96176" i_length="187">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96175" g_stop="96123" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="248" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96122" i_stop="95201" i_length="922">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95200" g_stop="95149" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="300" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95148" i_stop="94764" i_length="385">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94763" g_stop="94701" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="363" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94700" i_stop="94602" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94601" g_stop="94542" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="423" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94541" i_stop="93635" i_length="907">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93634" g_stop="93592" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="466" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93591" i_stop="93114" i_length="478">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93113" g_stop="92655" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="923" r_length="457" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="934" polyA_stop="955"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E706720" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97337" e_stop="97200"/>
          <exon e_start="96419" e_stop="96363"/>
          <exon e_start="96175" e_stop="96123"/>
          <exon e_start="95200" e_stop="95149"/>
          <exon e_start="94763" e_stop="94701"/>
          <exon e_start="94601" e_stop="94542"/>
          <exon e_start="93634" e_stop="93592"/>
          <exon e_start="93113" e_stop="92655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCAGTAAGTGGGTTTTCGTTTCTTTACTTTCAATTAATACTAATTTGATTTTTGTAGTTTAATTTATTGTTTGATCGAACAATGGTGATGATTTTAGTGCATTTTGTTTTATAGCTTTTGTTTTGGCTAATATTGGTAGTTAATTGTTATGATCATTTGGATTTTTGTAACTTGAGAACTTGAAGTGAAAGAAATGAGGTGATTTTGCCAAAAAAAAAGAAAAAAAAACGGACAGTTTGATGCACAAATCATTACAATCAGCAGTGGGCGGTCGTTGAAAATTGGGACTTTGGATGGTGGGGTGCATATTGAATGCCTAGGAGTGTTAAGCTTAACTTTTTGCATGTTGTTTAGGTTATTCAGAATTTATATAGGTATATAAACACAGAAAATCTATCCTATATGTACAATGTAAGTTTTTGCCGAGGGGGTTTGGCTGAATACCCTCGTGTCCCCCTAGATTTGCTCGCTTCAGGCTAGTGGTTCGTATAGGTCACACAAAGATAACTTAACAAAATGAGGTGATCAGGAACATTTGGAAATTGGACAAAAGAATTACTTACCTAGGACTGGTATAACTCTTCCCAGATATTCAGGCGTTCAAGAAGTTCATTTTTATTTGGGGTAGGGGAAGTGAAAATGAGAGAGGGTGAAAGTTCAGGTAGGTCGCCAACCAACTGACCTACTAAGATTTCTCCGTTCAAGAGTTGTATGTAGGACAGCCTTGTTTTTTATTATGTTATCTACTAAAGAACTTTATGTGATAGTTCTATATTTTATTAGTGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAGGTATGTCTTATTAGGAGAAATACTATCCAGCTCTATATCTTGTTTCAAGTCTAAGTAGCATCCCCTTCTCTATCATGTTAATATGTCATGAAGAAAAACAATCGGCTGCTATTATTAACTTTTCAAGTTACACTATTACGTCTTTTATTGCCATTAAGTAGTTACTACTTACAATTGATTGACGTAGTTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAGGTAAAATTTGACCTTTCATGTTACAATTCTATGCTCATAATTCATTGACCATCCTTAACCAGCACTGTCTTTTCTTTGTATGAACTGTTCTTATTCAAGAATAGCACTGTTATCCCTTTATCAGCATGGTTAAAATTATAGAATACGTTTTAATAAACCGAATAGTTTAGCTCTTCTTTTCATATATGGAATGAAAACATGAAAATCATGTTGTTGTATAAATGATATGCAACATCAATGTGATGCTCTGATATTTGAGTATAGGAAAATTAATTGCTTTTGCTGCAATCCATATCTCTTGCACTGTCTGCTACTACAATGAATTCTTAGATATTTAATCACTTGATATTCTCTTTTTATTTTGATTTTGATAGGCAAATAATTCATTAAAAATTGGAGGGGTATGTACCGATATGCATTTAACTAGAGTCTGGTTTTAAAAATAAGCCAGCAAAAGTCCCATAAACCCCTGTTGCTTCTTTTGTCATTAATTTCAGCTCTAGGCTTTCAATTTTCATTGTGGTTGTGTTTTTATTTTAACATCTTATGGTACTTGAAACACTAAGCGGGTTTTCCTTCTCGTCGTTCTTGTTTGTTGTGCCATTCCATTTATGCCTTTTTGGCCATGACCAATTAATTGAACATAGGTCCTCATGTATAAGGTGCAATCTAGTTGAGGTGCTTCTACCATTACATCCGCTGTAAAAAAAAGAGAAGATAATGATTGCAAAGCTTGTCAAATTATTTGCTTTCAACCAAGTGCTGGAACTTATGTGATTAAATTAGGTCACAAATTGTCACTTTTAGCTTATGTTTTTCAGATATGCATCCTTTCAAATGTAAGTATGTACTGAACTGTATTTAATTTAGCTCAAGTTACTTCCCGAACTGTATTTTGATGGTTGTCTATTTTCTCTACCAGGAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTCGTAAGTTTTCCAATTTCATGTCTCTCTTTTGGTCATGGATTTATTATAACCACTCTTGAAAAAACTGCTCTAATGTCTTACTCCTAACATCGAGGATATTTAAGTTTATAATAGATGATAGAAAGAAGCTCATCATTCAACTTTTAGATGGTTGTACTTTCAAAGTAAGTTTAGGTACTTAAACTACAGGATGACCTAGATTTATTTTTCTTTCCTACTTCATAATTTTAGTTGCTTATGATTTATGAGTTTACTTTTGCTGTTAGTCTGGTTTGAGATTTTCCTAACTTACATGCTTACTTGAGACACACTTCGGTGGTCATTTGATTGGCTGTCAGTAGGAAAATAACCTTTCTGAGAATGTATTATCTTTTTGTTGCTTTAGGTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTGGTAAGTTGCTTACTTAAGTTCTACAGACTCTGAAAGGGGAAGCAAATTGCTACTTGAACTGCATGACATTCATTCCTCTTCACCTTGTCCGATCCCCAGGTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAGGTATCACCCTATCCTACAAAAGTACCCATGTCCAAATGTCCATTCTTTAAGGTAGGGCCTGCTTGGTTTTGCAATCAATTTTTTTTTTCGTTTAGAAAACAAAAAAAAATGGTTGCAAAACCATTCTTCCTCTTCCGTTTTTGATGCATAAGATGTTCTCAGGAAACAGCGAATTGTGAAAGAAAGATAGTGGGTTGTGTAAGCTTCCTTTTTTGCAAATTGCACTTCCTCCAATGGTCTTCACTCTGTTAAAACCTTATGAACCTTTAATGTGGTGTGTGTGAGTTTGGTAACTCAGAGTAAATTATGGGGCTAATGAAGAGGAATTTCTTTTGTCGTGTAGCATGTTAGAGGGTGTTTTGCTTTGCCAACAAGATGCGCCTGTGTAATACCACAATGCGGATAGGATAGTACGTTCAAAATATAATATGGAATACTGTAGTGCCTGATTGATTCATTATACTGAATACCTATTTATTCCACATAAATGGTAAATATTATTTATTCTCTATTCATATGATAAACTTGGTGCTTAACTGGGCAACTAAATCCTAACTTGAATGATATAGATGTAAATGTCCATTTGTTTCCCTTTTTGCAAAATCAGTCATGTACAGTAAACAGTGTAATGAGTCTATTGATGCAGCTAATGCCTAATAATTACCATGATTCCAAATACAGTGTTTTTATCAGCAAACCGAATAGTTTTCGCTTGCCCCCCTTTTTTACTTGGAGCTAAGCAGCAGTTGTTGTGAATTTTGATACATTATGGTCTGATGTTAATCCATATAACGATACATCTTTTTGTTCTGCGACAGTTCTCCATTCCCCGTTTTTATTATTCTCTTCAGCTAATGTATGCCAATTGTTTCTGGACTTTGTTTTGATTGCATCTTTGTTTCTGAAGGTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAGGTGAGTCAAAGCAAATATACTTTTTCCAGTGTGGATTGCTTTAAGAGGTTTTCACAATTGTAATCATTAATGACAAAAAAGAAAAAGTAAAGAAGTGAAAAGGAAAGTGGAGGATGAGAAATAATTTTCAGATAATTTTTCTTGCAGCCGATGAATTTGACATTGTTATTGTGTTCTCCCTCTTATAGAACTTGCATATTGTGTAATATAGACATGCCATACCAAAAGTTACTGAAGCAGCAATGTGCTTATCATGTCAGACAACAAACACAAAAAGTTCTATTGTTTGTTCTCTTTGTTGTTTTTATCTACCCTTCTATTGATACACCTAACCAACACTGGACACTTTAGTTCTTTTACGATTTAAATCATTACTAGTGGAAATAAGCTTACATAGAATGAATGATAACAGGATGACTAGATATTAGACGTTCTAATGATCATCAGCAACGACTTAAATGTATCTTGTTTGTTTCAGGTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACAATTGATAAGATCTTAACAGAAGAAAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAGAGTAGAGTGTATCCATATCGTAAAGAG</genome_strand>
        <mrna_strand>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAG...........................................................................................................................................................................................TTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTC.................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTG...................................................................................................GTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACCATTGATAAGATCTTACCAGAAG-AAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAAAGTA-AGTGTATCCATATCGTAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E718918" ref_strand="+" ref_description="SGN-E718918 [FC06AH03]">
      <seq>tggatgaatttatatctcccatttccaggtggaagatgccatttgaggagagtggatctacttcgaatctctactattcatttgacgttgctggggttcatacaatcatgcttggttcatatactgattacgatgactactctgatcaatatcgatggctgaaggctgatcttcataaggttgatcgcaataagactccttggttggttgtgttattccatgtgccatggtataacagtaatgaggctcatcaaggtgaagcttatgacatgatggcatctattgagcctctgttatatgcagctggtgcagatatagtatttgctgggcatgttcatgcttatgaacgcacgcaacgagtttataatggtaaacctgatccttgtggtgctgtccacataacaattggtgatggaggaaacaaagaaggtttagcgcgcaagtacaagctaccccaaccagaatggtctgtgttccgcgaagcaagctttggccatggtgaacttgcgataattaattcaactcatgcctcttggagctggcatagaaatgatgatgatgaaccagtgaggtctgatcaagtttcgattacctcgttgattgattcaggatgcagcagcgttagagtcatgaactaagagaaatccttggaagctcttagctctacttgtaacagaaaccaactacttgttcttattattaagtaaatttaggagatatattgagtaatgtctcttgttgctcaaactcaacagtcaaaaacttgaagatgagagctgtaagttgaataccatgccataaaaatgtaactaattgttctgtagaaaacatctataattcagaagctttagcatgaacgtttacatgtaactcaaaaagtagtctatcaactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103256" stop="101379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102956" g_stop="102793" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102701" g_stop="102513" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="353" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102427" g_stop="102339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="442" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102131" g_stop="101679" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="895" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E718918" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102956" e_stop="102793"/>
          <exon e_start="102701" e_stop="102513"/>
          <exon e_start="102427" e_stop="102339"/>
          <exon e_start="102131" e_stop="101679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAGGTTAATTAGCTGAGCTCTCGTTTATTACTGAAAAGCTTAGCAACTTTTCGTTCTGCTAATACAAGTGCATTTATTGGAAATTCATTTCTAGGCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACGGTATGCCTAGCTTGCTAATTTACTTGTTTACTTTTGATTATTGCATACTCGTAGATGATGCAATTCATTTCTTCTTTTACAACAGCAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAAGTAAGTATTCCTTGTATTAATTTTTCTCGCCATGCTGAGCACAAGATCCTTAAAATGGCAATGGAAACAAGAACTTGTTTGGTTCTGTTTCTGAGTTGAACAACTTTGACAACAAAAGGAAACTTCTCACAAAGTGCTTATATAAGGTTTTGTAGAGTGGAAGTTATTATGACAATGAACTTACATGTCCTGGCGAATCATTGACAGGTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</genome_strand>
        <mrna_strand>TGGATGAATTTATATCTCCCATTTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG...........................................................................................GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTTATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACG.....................................................................................CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA...............................................................................................................................................................................................................GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E295999" ref_strand="+" ref_description="SGN-E295999 [cLET-27-I24]">
      <seq>gcttatgaacgcacgcaacgagtttataatggtaaacctgatccttgtggtgctgtccacataacaattggtgatggaggaaacaaagaaggtttagcgcgcaagtacaagctaccccaaccagaatggtctgtgttccgcgaagcaagctttggccatggtgaacttgcgataattaattcaactcatgcctcttggagctggcatagaaatgatgatgatgaaccaatgaggtctgaataaggttcgaataactcggtggttggtttacggaggcaccagcggttggagtcatgaactaagagaaatccttggaagctctttactctacttgtaacagaaaccaactacttgttcttattattaagtaaatttaggagatatattgagtaatgtctcttgttgctcaaactcaacagtcaaaaacttgaagatgagagctgtaagttgaataccatgccataaaaatgtaactaattgttctgtagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="102730" stop="101444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102527" g_stop="102513" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102427" g_stop="102339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="104" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102131" g_stop="101744" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="494" r_length="390" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E295999" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102527" e_stop="102513"/>
          <exon e_start="102427" e_stop="102339"/>
          <exon e_start="102131" e_stop="101744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGAACGCACGGTATGCCTAGCTTGCTAATTTACTTGTTTACTTTTGATTATTGCATACTCGTAGATGATGCAATTCATTTCTTCTTTTACAACAGCAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAAGTAAGTATTCCTTGTATTAATTTTTCTCGCCATGCTGAGCACAAGATCCTTAAAATGGCAATGGAAACAAGAACTTGTTTGGTTCTGTTTCTGAGTTGAACAACTTTGACAACAAAAGGAAACTTCTCACAAAGTGCTTATATAAGGTTTTGTAGAGTGGAAGTTATTATGACAATGAACTTACATGTCCTGGCGAATCATTGACAGGTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCA-GGATGCAGCAGC-GTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACA</genome_strand>
        <mrna_strand>GCTTATGAACGCACG.....................................................................................CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA...............................................................................................................................................................................................................GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAATGAGGTCTGAATAAGGTTCGAATAACTCGGTGGTTGGTTTACGGAGGCACCAGCGGTTGGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTTACTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E703747" ref_strand="+" ref_description="SGN-E703747 [FA22BD11]">
      <seq>cacatttggtcaactggttcagccgctggctagtgcaagaccatggatggtgactcaagggaatcatgaaaaagaaaacataccattcgttgtggatgaatttatatcttacaactccaggtggaagatgccatttgaggagagtggatctacttcgaatctctactattcatttgacgttgctggggttcatacaatcatgcttggttcatatactgattacgatgactactctgatcaatatcgatggctgaaggctgatcttcataaggttgatcgcaataagactccttggttggttgtgttattccatgtgccatggtataacagtaatgaggctcatcaaggtgaagctgatgacatgatggcatctattgagcctctgttatatgcagctggtgcagatatagtatttgctgggcatgttcatgcttatgaacgcacgcaacgagtttataatggtaaacctgatccttgtggtgctgtccacataacaattggtgatggaggaaacaaagaaggtttagcgcgcaagtacaagctaccccaaccagaatggtctgtgttccgcgaagcaagctttggccatggtgaacttgcgataattaattcaactcatgcctcttggagctggcatagaaatgatgatgatgaaccagtgaggtctgatcaagtttcgattacctcgttgattgattcaggatgcagcagcgttagagtcatgaactaagagaaatccttggaagctcttagctctacttgtaacagaaaccaactacttgttcttattattaagtaaatttacgagatatattgagtaatgtctcttgttgctcaaactcaacagtcaaaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103348" stop="101508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103048" g_stop="102793" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102701" g_stop="102513" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="445" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102427" g_stop="102339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="534" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102131" g_stop="101808" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="858" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E703747" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103048" e_stop="102793"/>
          <exon e_start="102701" e_stop="102513"/>
          <exon e_start="102427" e_stop="102339"/>
          <exon e_start="102131" e_stop="101808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAGGTTAATTAGCTGAGCTCTCGTTTATTACTGAAAAGCTTAGCAACTTTTCGTTCTGCTAATACAAGTGCATTTATTGGAAATTCATTTCTAGGCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACGGTATGCCTAGCTTGCTAATTTACTTGTTTACTTTTGATTATTGCATACTCGTAGATGATGCAATTCATTTCTTCTTTTACAACAGCAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAAGTAAGTATTCCTTGTATTAATTTTTCTCGCCATGCTGAGCACAAGATCCTTAAAATGGCAATGGAAACAAGAACTTGTTTGGTTCTGTTTCTGAGTTGAACAACTTTGACAACAAAAGGAAACTTCTCACAAAGTGCTTATATAAGGTTTTGTAGAGTGGAAGTTATTATGACAATGAACTTACATGTCCTGGCGAATCATTGACAGGTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTG</genome_strand>
        <mrna_strand>CACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG...........................................................................................GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACG.....................................................................................CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA...............................................................................................................................................................................................................GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTACGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E698959" ref_strand="+" ref_description="SGN-E698959 [FA08AE08]">
      <seq>ggaacatccactggaaaatatagttataaagctcaaggagaaagtaccaagtacagttacctgttttatcgttctgggatgatacatcatactgtgataggaccattgcaagacagcacagtgtatttctacagatgtggtggagaagatccggagttccagttcaaaactccaccgtctaagtttcctgttacttttgcagtggcaggagatttaggccaaactggatggacgaagtcaactttagaccatatagaccaatgtaaatatgatgttcatttgctccctggtgacctttcttatgctgattatgttcaacataggtgggacacatttggtcaactggttcagccgctggctagtgcaagaccatggatggtgactcaagggaatcatgaaaaagaaaacataccattcgttgtggatgaatttatatcttacaactccaggtggaagatgccatttgaggagagtggatctacttcgaatctctactattcatttgacgttgctggggttcatacaatcatgcttggttcatatactgattacgatgactactctgatcaatatcgatggctgaaggctgatcttcataaggttgatcgcaataagactccttggttggttgtgttattccatgtgccatggtataaccagtaatgaggctcatcaaggtgaagctgatgacatgatggcatctattgaccctcctgttatatgcagctggtgcagatatagtatttgctgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="103677" stop="102235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103377" g_stop="102793" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102701" g_stop="102535" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="754" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E698959" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103377" e_stop="102793"/>
          <exon e_start="102701" e_stop="102535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAGGTTAATTAGCTGAGCTCTCGTTTATTACTGAAAAGCTTAGCAACTTTTCGTTCTGCTAATACAAGTGCATTTATTGGAAATTCATTTCTAGGCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAA-CAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCT-CTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCA</genome_strand>
        <mrna_strand>GGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG...........................................................................................GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACCAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGACCCTCCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E727906" ref_strand="+" ref_description="SGN-E727906 [LA16AD11]">
      <seq>caccctttatggagctcaaattgaagatactactactattattactctctttgacatccattccgttcatcagcagaacagtccgagctggagaagaagtagaatatctccgacctccgccgcgtaaggcctttcgtttgccatgggatccacaatcttcctctcaacctcaacaggttcacatctcattagctggagacaaacacataagggtatcatgggtgacaactgataaatcttctccttcaattgttgaatatggaacatccactggaaaatatagttataaagctcaaggagaaagtaccaagtacagttacctgttttatcgttctgggatgatacatcatactgtgataggaccattgcaagacagcacagtgtatttctacagatgtggtggagaagatccggagttccagttcaaaactccaccgtctaagtttcctgttacttttgcagtggcaggagatttaggccaaactggatggacgaagtcaactttagaccatatagaccaatgtaaatatgatgttcatttgctccctggtgacctttcttatgctgattatgttcaacataggtgggacacatttggtcaactggttcagccgctggctagtgcaagaccatggatggtgactcaagggaatcatgaaaaagaaaacataccattcgttgtggatgaatttatatcttacaactccaggtggaagatgccatttgaggagagtggatctacttcgaatctctactattcatttgacgttgctggggttcatacaatcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="104991" stop="102546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104691" g_stop="104516" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104515" i_stop="103462" i_length="1054">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103461" g_stop="102846" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="792" r_length="616" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E727906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104691" e_stop="104516"/>
          <exon e_start="103461" e_stop="102846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAATAATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAGGTAATGAGGATCGAGGCGGATCTAGAATTTTAAGTTTTTTCTCTGATAGCAAATCAAATTAATGTATGAACACTGGAAATATGTGTAACTTATATAGTAGTACTCAATTTTTTATTTTTATTTTGAATATTTAAGTTTTAATGTTAAAATATTGAGTTGATTAAAGTCAAATTTACTCTCGGTAAGTAAAATGTGTCGTATAGATTGAGACAGAGATGTATCGAGAGAGTAGTAGGGAGGTGAGTAAAATGTGTCATGTAAATTGAGACAGAGAGATATTGAGGGAAGAGATTTTTTGAGAATGAGTGCCAACTTACTAGAAGAGATATATTGTAATTTTGGGTCTGGATTATATCTGGATACTGTTGTTTAGCTGAGTTTAGGAGTTTTAATTACTCTTTGTTACAATATGATGTGAAACTAAGGGTGCTTAATATTCTTCTTTTTGATCTGATAAGGTTCGTATATGGGTCAATGTTTTACCATAATTTGGTTATTCCTTAATGATTGAAACTTGAATCAACCGTCTTTAACCTCCTGAAGTTACCAATTTTCATGGTATCTGTGTTTTCATTCTTCATAGGAAGTTGTAGTTTTGATTTTCTACGCATTGCTTTGCATGATATCAATGTGCAATGTAGTTTAATTAGGCGTCAATTAAGCTCAATACACTCCAAAGCTCTGTTCTTTTGTGCTTTCGTTTTCTTATTGTGTATTCAAGCTAGTGTTTGGTCCTGTTTAGGAGGATGTAGAATGTTTTCACGGTCATTATGTTAGTCAAAGGTGGAGCCAGGATTTAATGTTAGTGAAATGCTATTATAACGAAGGTGGGGGAGGGGTTGGCATGAAGGGTGGTGTAAAGAACTACTAATATTTCTTGGATTCATTTCAATTCGACTAACTTCTCTTTCCCTCTTTAGTTTCTTGATTCAGAGCACAAACCGAACTTTTGCAACCTATCAAGCATAAAAAAGGAAACATTTTATGTCATTCCAAATTGGTTTACTGTTGTGGCTTGTATAGTTGATCATGTGGATTGACATGGTCATTTCAGGTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGC</genome_strand>
        <mrna_strand>CACCCTTTATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E714230" ref_strand="+" ref_description="SGN-E714230 [FB10DE04]">
      <seq>atggagctcaaattgaagatactactactattattactctctttgacatccattccgttcatcagcagaacagtccgagctggagaagaagtagaatatctccgacctccgccgcgtaaggcctttcgtttgccatgggatccacaatcttcctctcaacctcaacaggttcacatctcattagctggagacaaacacataagggtatcatgggtgacaactgataaatcttctccttcaattgttgaatatggaacatccactggaaaatatagttataaagctcaaggagaaagtaccaagtacagttacctgttttatcgttctgggatgatacatcatactgtgataggaccattgcaagacagcacagtgtatttctacagatgtggtggagaagatccggagttccagttcaaaactccaccgtctaagtttcctgttacttttgcagtggcaggagatttaggccaaactggatggacgaagtcaactttagaccatatagaccaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="104983" stop="102809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104683" g_stop="104516" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104515" i_stop="103462" i_length="1054">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103461" g_stop="103116" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="514" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="559"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E714230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104683" e_stop="104516"/>
          <exon e_start="103461" e_stop="103116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAGGTAATGAGGATCGAGGCGGATCTAGAATTTTAAGTTTTTTCTCTGATAGCAAATCAAATTAATGTATGAACACTGGAAATATGTGTAACTTATATAGTAGTACTCAATTTTTTATTTTTATTTTGAATATTTAAGTTTTAATGTTAAAATATTGAGTTGATTAAAGTCAAATTTACTCTCGGTAAGTAAAATGTGTCGTATAGATTGAGACAGAGATGTATCGAGAGAGTAGTAGGGAGGTGAGTAAAATGTGTCATGTAAATTGAGACAGAGAGATATTGAGGGAAGAGATTTTTTGAGAATGAGTGCCAACTTACTAGAAGAGATATATTGTAATTTTGGGTCTGGATTATATCTGGATACTGTTGTTTAGCTGAGTTTAGGAGTTTTAATTACTCTTTGTTACAATATGATGTGAAACTAAGGGTGCTTAATATTCTTCTTTTTGATCTGATAAGGTTCGTATATGGGTCAATGTTTTACCATAATTTGGTTATTCCTTAATGATTGAAACTTGAATCAACCGTCTTTAACCTCCTGAAGTTACCAATTTTCATGGTATCTGTGTTTTCATTCTTCATAGGAAGTTGTAGTTTTGATTTTCTACGCATTGCTTTGCATGATATCAATGTGCAATGTAGTTTAATTAGGCGTCAATTAAGCTCAATACACTCCAAAGCTCTGTTCTTTTGTGCTTTCGTTTTCTTATTGTGTATTCAAGCTAGTGTTTGGTCCTGTTTAGGAGGATGTAGAATGTTTTCACGGTCATTATGTTAGTCAAAGGTGGAGCCAGGATTTAATGTTAGTGAAATGCTATTATAACGAAGGTGGGGGAGGGGTTGGCATGAAGGGTGGTGTAAAGAACTACTAATATTTCTTGGATTCATTTCAATTCGACTAACTTCTCTTTCCCTCTTTAGTTTCTTGATTCAGAGCACAAACCGAACTTTTGCAACCTATCAAGCATAAAAAAGGAAACATTTTATGTCATTCCAAATTGGTTTACTGTTGTGGCTTGTATAGTTGATCATGTGGATTGACATGGTCATTTCAGGTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAAT</genome_strand>
        <mrna_strand>ATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E234330" ref_strand="-" ref_description="SGN-E234330 [cLEL-8-B2]">
      <seq>agtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccatttctgatttgcagtattcgattgcatttggtttgcttgtgagcagcatctagtaaatgtgatgcttataattgacgaaacaaagatggtagagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106036" stop="105123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105736" g_stop="105431" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="313" polyA_stop="330"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E234330" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234330" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105736" e_stop="105431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</genome_strand>
        <mrna_strand>AGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E230878" ref_strand="-" ref_description="SGN-E230878 [cLEL-35-C6]">
      <seq>agtttaattattttcaagaaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccatttctgatttgcagtacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106064" stop="105203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105764" g_stop="105504" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="262" polyA_stop="280"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E230878" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105764" e_stop="105504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGT</genome_strand>
        <mrna_strand>AGTTTAATTATTTTCAAGAAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E287077" ref_strand="-" ref_description="SGN-E287077 [cLES-6-N20]">
      <seq>gcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106687" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106387" g_stop="106295" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="190" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="352" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105767" g_stop="105512" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="608" r_length="256" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E287077" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106387" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGA</genome_strand>
        <mrna_strand>GCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E371461" ref_strand="-" ref_description="SGN-E371461 [TUS-29-N12]">
      <seq>gattggcccggctgcaaccagaaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108289" stop="105222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107989" g_stop="107943" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="103" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="234" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="331" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105514" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="747" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E371461" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107989" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCT</genome_strand>
        <mrna_strand>GATTGGCCCGGCTGCAACCAGAAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373560" ref_strand="-" ref_description="SGN-E373560 [TUS-31-P12]">
      <seq>tgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcaggtatgacaaatatggccttgaagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108260" stop="105222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107960" g_stop="107943" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="74" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="205" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="302" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105856" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="487" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105855" i_stop="105768" i_length="88">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105514" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="741" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373560" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373560" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107960" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105856"/>
          <exon e_start="105767" e_stop="105514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCT</genome_strand>
        <mrna_strand>TGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAG........................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E292116" ref_strand="-" ref_description="SGN-E292116 [cLET-1-K3]">
      <seq>tggtgcatattatgggtatgcccaagaatataaggcttatgtatatgctcctcccgctcaggaccttaatatgtattatggcaatcacccaggatatgggaattatcagcagccacagcaggtatgacaaatatggccttgaagtaaagtttaataatttacaaggaggatgagaagtacacgacgttcaaatttccagtgcttagcctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtggaacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106299" stop="105222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105999" g_stop="105856" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105855" i_stop="105768" i_length="88">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105767" g_stop="105514" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="398" r_length="254" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E292116" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292116" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105999" e_stop="105856"/>
          <exon e_start="105767" e_stop="105514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCT</genome_strand>
        <mrna_strand>TGGTGCATATTATGGGTATGCCCAAGAATATAAGGCTTATGTATATGCTCCTCCCGCTCAGGACCTTAATATGTATTATGGCAATCACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAG........................................................................................TAAAGTTTAATAATTTACAAGGAGGATGAGAAGTACACGACGTTCAAATTTCCAGTGCTTAGCCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGAACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E712763" ref_strand="+" ref_description="SGN-E712763 [FB05DA08]">
      <seq>gtagatggtgcaaaagttgtaacaaatagaattactggacgtaccaagggatatggatttgtcaggttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaaaaaaccaatgggtaccccccaaaaagctacctaccaaaatcctcgagctactcaaggcaaaagtgaccccaataatacaactatatttgttggtggtttggatcccactgttgcagaacagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcactttggtaggagagcttctgctgagcaggctttgtcaagcttgaatggcacacggttgggaggactaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagtttttcttaccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108429" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108129" g_stop="107943" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="243" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="374" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="471" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="633" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="880" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="881" polyA_stop="894"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E712763" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108129" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>GTAGATGGTGCAAAAGTTGTAACAAATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAGGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAAAAACCAATGGGTACCCCCCAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCGAGCTACTCAAGGCAAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCACTGTTGCAGAACAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCACTTTGGTAGGAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACGGTTGGGAGGACTAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAG-TTTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E714816" ref_strand="+" ref_description="SGN-E714816 [FB12CA12]">
      <seq>atcccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106858" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="69" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="200" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="297" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="459" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="707" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="725"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E714816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E202893" ref_strand="+" ref_description="SGN-E202893 [cLEB-1-L5]">
      <seq>gcacgaggcttcgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106624" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106324" g_stop="106295" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="126" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="288" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="536" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="554"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E202893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106324" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>GCAC-GAGGCTTCGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E229266" ref_strand="-" ref_description="SGN-E229266 [cLEL-29-J19]">
      <seq>gtccgatcaggctcaatggggtgaaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttctttcccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106341" stop="105220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106041" g_stop="105879" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="411" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="429"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E229266" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229266" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106041" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>GTCCGATCAGGCTCAATGGGGTGAAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E230656" ref_strand="-" ref_description="SGN-E230656 [cLEL-35-C4]">
      <seq>tccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttaccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106340" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="410" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="429"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E230656" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230656" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E230588" ref_strand="-" ref_description="SGN-E230588 [cLEL-35-C4]">
      <seq>caatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttacccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106328" stop="105220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106028" g_stop="105879" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105767" g_stop="105520" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="398" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="417"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E230588" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230588" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106028" e_stop="105879"/>
          <exon e_start="105767" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>CAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E222227" ref_strand="-" ref_description="SGN-E222227 [cLEL-16-M18]">
      <seq>ttattttcaaggaggctaagaagtaaacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttcttgccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106057" stop="105219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105757" g_stop="105520" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="239" polyA_stop="257"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E222227" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222227" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105757" e_stop="105520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACC</genome_strand>
        <mrna_strand>TTATTTTCAAGGAGGCTAAGAAGTAAACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E250524" ref_strand="+" ref_description="SGN-E250524 [cLEG-18-G16]">
      <seq>gcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttaagttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106695" stop="105225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106395" g_stop="106295" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="198" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="360" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105767" g_stop="105525" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="603" r_length="243" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E250524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106395" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTC</genome_strand>
        <mrna_strand>GCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555726" ref_strand="-" ref_description="SGN-E555726 [cTSD-1-D20]">
      <seq>tcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttacctgcagcccgggggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108432" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108132" g_stop="107943" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="246" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="377" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="474" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="636" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="871" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555726" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555726" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108132" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>TCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555667" ref_strand="-" ref_description="SGN-E555667 [cTSD-1-A18]">
      <seq>acagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttactgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108408" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108108" g_stop="107943" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="222" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="353" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="450" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="612" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="847" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555667" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555667" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108108" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>ACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555759" ref_strand="-" ref_description="SGN-E555759 [cTSD-1-F12]">
      <seq>cagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttactgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108407" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108107" g_stop="107943" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="221" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="352" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="449" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="611" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="846" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555759" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555759" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108107" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>CAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E557028" ref_strand="-" ref_description="SGN-E557028 [cTSD-2-N1]">
      <seq>tcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatttaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaaatgtaccttgacctgtgcgtagactctgttactgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108368" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108068" g_stop="107943" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="182" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="313" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="410" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="572" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="807" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E557028" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108068" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>TCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATTTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAAATGTACCTTGACCTGTGCGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E556960" ref_strand="-" ref_description="SGN-E556960 [cTSD-1-L24]">
      <seq>gatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttacctgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108357" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108057" g_stop="107943" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="171" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="302" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="399" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="561" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="796" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E556960" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556960" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108057" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>GATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E556712" ref_strand="-" ref_description="SGN-E556712 [cTSD-4-F5]">
      <seq>cccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgttactgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108297" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107997" g_stop="107943" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="111" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="242" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="339" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="501" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105533" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="736" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E556712" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556712" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107997" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAA</genome_strand>
        <mrna_strand>CCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555915" ref_strand="-" ref_description="SGN-E555915 [cTSD-1-M9]">
      <seq>tcatcagtaaaaggtgcaaaagtgttaacagatagaattactggacgtaccaagggatatggatttgtcaagtttttttgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaacatcctcaagctactcaaggcgaaagtgaccccaataatacatctatattttttggtggttaggatcccagtgtcgcagaagagcatctgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagtatatgctgagcaggcttagtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgttggtgcatattatgggtatgtccaaggatatgaggcttatggatatgctcctcccgctcaggaccataatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggttaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaagtgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttggtattacactaacgtgtaccgaaacattccacaactgtaccttgacctgtgtgtagactctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108435" stop="105234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108135" g_stop="107943" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="250" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="381" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="478" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="640" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105534" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="875" r_length="235" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555915" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555915" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108135" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTT-CTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCA-AACTGTACCTTGACCTGTGTGTAGACTCTGTTA</genome_strand>
        <mrna_strand>TCATCAGTAAAAGGTGCAAAAGTGTTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTTTTTTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAACATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACATCT...........................................................................ATATTTTTTGGTGGTTAGGATCCCAGTGTCGCAGAAGAGCATCTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGTATATGCTGAGCAGGCTTAGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGTTGGTGCATATTATGGGTATGTCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCATAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGTTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAAGTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGGTATTACACTAACGTGTACCGAAACATTCCACAACTGTACCTTGACCTGTGTGTAGACTCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555923" ref_strand="-" ref_description="SGN-E555923 [cTSD-1-N17]">
      <seq>tcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgtactgcagcccgggggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108432" stop="105236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108132" g_stop="107943" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="246" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="377" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="474" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="636" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105538" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="866" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555923" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555923" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108132" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</genome_strand>
        <mrna_strand>TCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E555682" ref_strand="-" ref_description="SGN-E555682 [cTSD-1-B14]">
      <seq>atagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgtactgcagcccgggggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108404" stop="105236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108104" g_stop="107943" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="218" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="349" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="446" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="608" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105538" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="838" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E555682" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108104" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</genome_strand>
        <mrna_strand>ATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E554752" ref_strand="-" ref_description="SGN-E554752 [cTSC-5-E8]">
      <seq>aaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaacattccaaactgtaccttgacctgtgtgtagactctgtactgcagcccgggggatccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108274" stop="105236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107974" g_stop="107943" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="88" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="219" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="316" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="478" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105538" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="708" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E554752" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554752" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107974" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</genome_strand>
        <mrna_strand>AAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E241376" ref_strand="+" ref_description="SGN-E241376 [cLED-28-H9]">
      <seq>taccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctattacactaacgtgtaccgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106851" stop="105272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106551" g_stop="106501" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="182" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="279" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="441" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105767" g_stop="105572" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="637" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E241376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106551" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACA</genome_strand>
        <mrna_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E727696" ref_strand="+" ref_description="SGN-E727696 [LA15BH09]">
      <seq>cgggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttttctcctgtctgtaacttgagtttgctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108487" stop="105292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108189" g_stop="107943" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="303" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="434" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="531" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="693" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105592" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="869" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E727696" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108189" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTA</genome_strand>
        <mrna_strand>CGGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242913" ref_strand="+" ref_description="SGN-E242913 [cLED-31-K16]">
      <seq>taccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggacattttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106851" stop="105322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106551" g_stop="106501" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="182" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="279" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="441" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105767" g_stop="105622" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="587" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106551" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTT</genome_strand>
        <mrna_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E554833" ref_strand="-" ref_description="SGN-E554833 [cTSC-5-I9]">
      <seq>accctaatatgtattatgggaattacccaggatatgggaattatcagcagccactgcagtgaagtttaattattttcaaggaggctaagaagtagatgacgttcaaatttccagtgtttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgattgtgagtttttgtgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106237" stop="105331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105937" g_stop="105879" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105767" g_stop="105631" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="196" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E554833" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554833" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105937" e_stop="105879"/>
          <exon e_start="105767" e_stop="105631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGAC</genome_strand>
        <mrna_strand>ACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACTGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGATGACGTTCAAATTTCCAGTGTTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E708345" ref_strand="+" ref_description="SGN-E708345 [FA35CA09]">
      <seq>catttcccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacatgaatttgataaactgagtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108516" stop="105347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108222" g_stop="107943" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="335" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="466" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="563" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="725" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105647" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="845" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E708345" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108222" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTG</genome_strand>
        <mrna_strand>CATT-TCCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTAC-ATGAATTTGATAAACTGAGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E243488" ref_strand="+" ref_description="SGN-E243488 [cLED-34-L17]">
      <seq>tttagtgcgtggcctcattttagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttcccgtcggtgtgactggttgtacaatgaatttgataaactgagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="107887" stop="105349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107587" g_stop="107565" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107564" i_stop="106557" i_length="1008">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="79" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="210" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="307" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="469" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105649" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="588" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E243488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107587" e_stop="107565"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGAT</genome_strand>
        <mrna_strand>TTTAGTGCGTGGCCTCATTTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E554694" ref_strand="-" ref_description="SGN-E554694 [cTSC-5-C10]">
      <seq>gtcaagttctctgaggagagtgaacaattgcgtggtatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccataatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatctttccagtcggcgggcctggttgtacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108369" stop="105370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108069" g_stop="107943" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="183" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="314" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="411" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="573" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105670" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="671" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E554694" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554694" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108069" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAAT</genome_strand>
        <mrna_strand>GTCAAGTTCTCTGAGGAGAGTGAACAATTGCGTGGTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCATAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCAGTCGGCGGGCCTGGTTGTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E228018" ref_strand="+" ref_description="SGN-E228018 [cLED-2-C23]">
      <seq>taccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaatttccagtgcttaggctgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106851" stop="105396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106551" g_stop="106501" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="182" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="279" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="441" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105767" g_stop="105696" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="513" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E228018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106551" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTT</genome_strand>
        <mrna_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E235762" ref_strand="+" ref_description="SGN-E235762 [cLED-15-G15]">
      <seq>tttagtgcgtggcctcattttagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaggctaagaagtagacgacgttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="107887" stop="105419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107587" g_stop="107565" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107564" i_stop="106557" i_length="1008">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="79" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="210" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="307" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="469" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105767" g_stop="105719" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="518" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E235762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107587" e_stop="107565"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAAT</genome_strand>
        <mrna_strand>TTTAGTGCGTGGCCTCATTTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E281272" ref_strand="+" ref_description="SGN-E281272 [cLEL-1-C16]">
      <seq>gcacgaggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggcacgacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacccaggatatgggaattatcagcagccacagcagtgaagtttaattattttcaaggaagctaagaagtagacgacgttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106624" stop="105419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106324" g_stop="106295" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="127" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106040" g_stop="105879" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="289" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111">
            <donor d_prob="0.054" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105767" g_stop="105719" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="338" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E281272" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106324" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105879"/>
          <exon e_start="105767" e_stop="105719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGG-AGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAGGTCTGGCTTGCGCCTTTTCACTTTCTGGATAGCCATATTGCATCTTCTTCAACAGTATTTCCTCATCCGTTGTTCACTTCATTTGCAGTGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAAT</genome_strand>
        <mrna_strand>GCAC-GAGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGCACGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG...............................................................................................................TGAAGTTTAATTATTTTCAAGGAAGCTAAGAAGTAGACGACGTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E728011" ref_strand="+" ref_description="SGN-E728011 [LA16BF12]">
      <seq>ggcgatatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggattacccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108530" stop="105607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108230" g_stop="107943" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="344" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="475" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="572" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105907" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="705" r_length="133" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E728011" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108230" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGG</genome_strand>
        <mrna_strand>GGCGATATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGG-ATTACCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E250808" ref_strand="+" ref_description="SGN-E250808 [cLEG-13-I3]">
      <seq>acattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatggggtggaagtgccggtgctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggatatgctcctcccgctcaggaccctaatatgtattatgggaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108453" stop="105611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108153" g_stop="107943" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="267" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="398" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="495" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105911" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="625" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E250808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108153" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACC</genome_strand>
        <mrna_strand>ACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E242103" ref_strand="+" ref_description="SGN-E242103 [cLED-37-A20]">
      <seq>taccaaaatcctcaagctactcaaggggaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcatgctttgtcaagcttgaatggcacacaattgggaggacaaagcattcagctttcttgggggcgtagcccctctaacaaacagtgcgatcatgctcaatggggtggaagtgccggagctggtgctggtgcatattatgggtatgcccaaggatatgaggcttatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="106851" stop="105656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106551" g_stop="106501" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="182" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="279" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106040" g_stop="105956" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="364" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E242103" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106551" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGAT</genome_strand>
        <mrna_strand>TACCAAAATCCTCAAGCTACTCAAGGGGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCATGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCAGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TGCGATCATGCTCAATGGGGTGGAAGTGCCGGAGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E209110" ref_strand="+" ref_description="SGN-E209110 [cLEC-38-K7]">
      <seq>ctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagtccgatcaggctcaatgggggtgaagtgccggtgctggtgctggtgcatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108485" stop="105687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108185" g_stop="107943" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="299" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="430" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="527" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106040" g_stop="105987" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="581" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E209110" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108185" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
          <exon e_start="106040" e_stop="105987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAGGTTTTTGGCCTATCTTTGCTGTATTAAACTTGATAAATCCGCTATTGTGCTGACTGTGATTATTCTATGTAGTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTAT</genome_strand>
        <mrna_strand>CTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG........................................................................TCCGATCAGGCTCAATGGGGGTGAAGTGCCGGTGCTGGTGCTGGTGCATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E728840" ref_strand="+" ref_description="SGN-E728840 [LA19AE07]">
      <seq>ggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtaaggtagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108487" stop="105813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108187" g_stop="107943" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="301" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="432" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106113" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="529" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E728840" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108187" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG</genome_strand>
        <mrna_strand>GGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTAAGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E238179" ref_strand="+" ref_description="SGN-E238179 [cLED-22-G9]">
      <seq>aattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttgggagtagagcttctgctgagcaggctttgtcaagcttgaatggcacacaattgggaggacaaagcattcggctttcttgggggcgtagcccctctaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108400" stop="105815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108100" g_stop="107943" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="214" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="345" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106115" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="440" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E238179" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108100" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAAC</genome_strand>
        <mrna_strand>AATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGGAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E231775" ref_strand="+" ref_description="SGN-E231775 [cLED-4-N22]">
      <seq>tttagtgcgtggcctcattttagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaattatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttcttcccatttggcgaattggttcacgtgaagatagtggctgcaaagctctgtggcttcgttcagttggttagtatagcttctgctgagcacgctttgtcaagcttgaatggcacacaattggaaggacaaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="107887" stop="105848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107587" g_stop="107565" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107564" i_stop="106557" i_length="1008">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="79" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="210" r_length="131" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="0.88"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106148" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="272" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E231775" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107587" e_stop="107565"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTC</genome_strand>
        <mrna_strand>TTTAGTGCGTGGCCTCATTTTAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATTATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTTCCCATTTGGCGAATTGGTTCACGTGAAGATAGTGGCTGCAAAGCTCTGTGGCTTCGTTCAGTTGGTTAGTAT.....................................................................................AGCTTCTGCTGAGCACGCTTTGTCAAGCTTGAATGGCACACAATTGGAAGGACAAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E727676" ref_strand="+" ref_description="SGN-E727676 [LA15BF05]">
      <seq>gccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcangctttgtcaagcttgaatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109390" stop="105872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109090" g_stop="108937" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="620" r_length="466" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="676" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="807" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106209" g_stop="106172" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="845" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E727676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109090" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCA</genome_strand>
        <mrna_strand>GCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCANGCTTTGTCAAGCTTGAATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E262696" ref_strand="+" ref_description="SGN-E262696 [cLEG-63-M23]">
      <seq>tctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttnggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgagcaggctttgtncagcttgaatggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109265" stop="105872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108965" g_stop="108937" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="496" r_length="467" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="552" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="684" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106209" g_stop="106172" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="722" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E262696" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108965" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTG-AACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTT-GGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCA</genome_strand>
        <mrna_strand>TCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTNGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAGCAGGCTTTGTNCAGCTTGAATGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E259174" ref_strand="+" ref_description="SGN-E259174 [cLEG-43-E13]">
      <seq>caaatgtggaacagaatttccgtatgaactgggccatctcttggtgcccggtgagaggcgagatgattcaccccgagtaccaccaatatttgttggtgatttggctgctgatgtgaccggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattacctggaccgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaaccaagaaaccaatgggtcccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctgtggctttgttcagtttggtagtagagcttctgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108584" stop="105988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108284" g_stop="107943" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="407" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106295" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="538" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106209" g_stop="106197" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="551" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E259174" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108284" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106295"/>
          <exon e_start="106209" e_stop="106197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTGGAACAGAATTTCCGTATGAACTGGGC-ATCTCTTGGTG-CCGGTGAGAGGCGAGATGATTCA-CCCGAGTA-CA-CAATATTTGTTGGTGATTTGGCTGCTGATGTGA-CGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTA-CTGGA-CGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAA-CAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAGGTAATGCCAGATGCAATTAATAATGTCTATTGCTAGATTTCTTGTCCATGTTCTTTTCTTATGTACTATCACTCGGCATTTCCAGAGCTTCTGCTGAG</genome_strand>
        <mrna_strand>CAAATGTGGAACAGAATTTCCGTATGAACTGGGCCATCTCTTGGTGCCCGGTGAGAGGCGAGATGATTCACCCCGAGTACCACCAATATTTGTTGGTGATTTGGCTGCTGATGTGACCGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACCTGGACCGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACCAAGAAACCAATGGGTCCCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG.....................................................................................AGCTTCTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E262327" ref_strand="+" ref_description="SGN-E262327 [cLEG-56-B18]">
      <seq>ctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaagagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaatagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaaaatagtggctggaaaacgctgtggctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109264" stop="106009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108964" g_stop="108937" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="494" r_length="466" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="550" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106425" g_stop="106309" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="667" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E262327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108964" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTT</genome_strand>
        <mrna_strand>CTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAAGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAATAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAAATAGTGGCTGGAAAACGCTGTGGCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E306844" ref_strand="+" ref_description="SGN-E306844 [cLEY-11-L19]">
      <seq>gaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccatatggtgaattggttcacgtgaagatagtggctggaaagcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108571" stop="106019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108271" g_stop="107943" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="385" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106319" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="492" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E306844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108271" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTG</genome_strand>
        <mrna_strand>GAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E253329" ref_strand="+" ref_description="SGN-E253329 [cLEG-26-N7]">
      <seq>gcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgttggtggtttggatcccagtgttgcagaagagcatttgcgacaagttttctccccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108712" stop="106061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108412" g_stop="107943" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="527" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106361" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="592" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E253329" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108412" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GC-AGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATA</genome_strand>
        <mrna_strand>GCGAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E281849" ref_strand="+" ref_description="SGN-E281849 [cLES-2-C14]">
      <seq>ttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccggctgcaaacaagaaaccaatgggtaccccccagaaagctacctaccaaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactatatttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108614" stop="106199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108314" g_stop="107943" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="428" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106425" g_stop="106417" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="437" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E281849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108314" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
          <exon e_start="106425" e_stop="106417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACTGTGGGTAGCTTGTTTCGATGTTAAGTTTGTTTTTCTAGTATATGCACTTCTAACCTTTCATATTCAAATGAACAGATATTTGTT</genome_strand>
        <mrna_strand>TTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT...........................................................................ATATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E706043" ref_strand="+" ref_description="SGN-E706043 [FA28DD06]">
      <seq>gtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctangcccatgaggattggcccggctgcaaacaaaaaccaatgggtaccccccagaaagctacctacccaaatcctcaagctactcaaggcgaaagtgaccccaataatacaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109588" stop="106198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109288" g_stop="108937" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="817" r_length="465" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106501" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="873" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E706043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109288" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT</genome_strand>
        <mrna_strand>GTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTANGCCCATGAGGATTGGCCCGGCTGCAAACAA-AAACCAATGGGTACCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCCAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E704426" ref_strand="+" ref_description="SGN-E704426 [FA24BA10]">
      <seq>gtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaagattggcccggctgcaaacaagaaaccaatgggtacccccccagaaagctacctaccaaaatcctcaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109588" stop="106233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109288" g_stop="108937" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107943" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="819" r_length="467" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386">
            <donor d_prob="0.936" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106556" g_stop="106533" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="843" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E704426" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109288" e_stop="108937"/>
          <exon e_start="108408" e_stop="107943"/>
          <exon e_start="106556" e_stop="106533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTA-CCCCCCAGAAAGGTATGGCCGTGTCACCCTTTCATCTGCTATGCTGAAGGTGGACCTTTTTGTTCTCTTTTTGTTTGCAGTTTGAACTGTACTGTTTGTTGTCTGCATTTGTGATATGGGGTACACAATGATGCCATAAATCTCTTGATGTGTTCAGAGTCTATAATTTGATTGTTCTTTAAGCTTTGCGCTTGAAGTAGTGGAATCATTAAAATCCTTTTCTTCCAGTACTTAACTTTCTACGCTTGGGGGCATTTAATTGTTTCAAAATGTGCACAAACTTATAAAACTCGTGTTGTCTCAAAGCAGGAAACAGAGAGGCTCTCATATGGGGGCCTGGAACTGATTTCAGCTGAAATGATTCCACTTTAGTGCGTGGCCTCATTTTAGGTCAGTGTATTTGTTTATGTCACGCTTCCTTACTTCGTATTCTTGTGGCATCTTATGCTACATTCAGTTAATTTCCAGTTCCTGAATTACTATTACGAACCTTCGTAAATTATTTTCATTTCTATCAAAATTTAAATTTCCTTTCTTCATTTTACCAGTTTATTTAATTCCTCAGCTGGCCTTGTGTTATTTCAGTTAGGATCTATCTTGTACACCTTTAAATAATGCTGCGGCAAGTTGTTTCAGTTCATTTCCTTTCAGTTCTTTTCCTTCCTTTGTGTGTCACGTTCACAGCTGTCTGTGTTAAGGTGTTTGCTACCAAGTCTAGGGACTCAACTTGACCTATCAACACCTTTTCAGCTCATCTCCCTTTGAACTGCCTTAACAGTTTTTCAAGGCATACATAATTATGACCCTTGACTTGACTTCAACGAACAACTATGCCCTCCAACTTTGATTGTGCACAACTAAGCACTTAAACTTGTATAAAATTAAACAGACACACGCTATACAAGTTTAAGTGCTTACTTGTGTACACCAAAAGTTAAAGGTCATTGTTGTTTGACGCCAAGTTAAGGGTCATGTTTATGTATTATGTCTTTTTTAACAAGGGTCTATGCCACAAAACATTGGACTTTGAAAATTCATGTCTTTCAAAGGGCGTGCATTCACGTGTAGGCTGTAAAGTAATGCTTATGGATACTTATTTGTTTTAATTTTGTGTTTTTTATGTGTTTGAATGCATTCATCTATTTCCCCTGCTCATGGATTTTCAGAACATGTGTGGAAATGTAAAATGATTGTCATAATGAATTAAAAGGACCTCACACTCTACTATCTTCATTTATAAAGCTTAGGCTAATTGATGTGTAGCCTTGTCTTGGTTTCTTCTTTTATGCTTTTGTGTTACTGTCCAATTCTCTCTACCTGCCGGACAGTCAAATTGACCATAGATGCCGTAGCACTTTTTGATGATTACATTTCTACTCACATCTTTTACCATTGCAGCTACCTACCAAAATCCTCAAGCTA</genome_strand>
        <mrna_strand>GTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAAGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCCAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTACCAAAATCCTCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E263261" ref_strand="+" ref_description="SGN-E263261 [cLEG-62-N24]">
      <seq>ctccacttgtatctatcacaccggcgagcttgtttctgctaaggtcatcatgttcaagcaaagtggccagtctgaatgttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgatggagatatggctgctgatgtgacggattatgtgctaccagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatataattactggacgtaccaagggatatggatctgtcaagctctctgatcagagtgaacaattgcgggctatgactgaaatgaatggtgtactttgttcatctatgcccctgaggattggcccggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109264" stop="107676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108964" g_stop="108937" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107976" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="461" r_length="433" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E263261" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108964" e_stop="108937"/>
          <exon e_start="108408" e_stop="107976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTG</genome_strand>
        <mrna_strand>CTCCACTTGTATCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCATGTTCAAGCAAAGTGGCCAGTCTGAATGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGATGGAGATATGGCTGCTGATGTGACGGATTATGTGCTACCAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATATAATTACTGGACGTACCAAGGGATATGGATCTGTCAAGCTCTCTGATCAGAGTGAACAATTGCGGGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTATGCCCCTGAGGATTGGCCCGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E257992" ref_strand="+" ref_description="SGN-E257992 [cLEG-48-N11]">
      <seq>caaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggcccatgaggattggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108584" stop="107680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108284" g_stop="107980" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E257992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108284" e_stop="107980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCG</genome_strand>
        <mrna_strand>CAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E305097" ref_strand="+" ref_description="SGN-E305097 [cLEY-18-J7]">
      <seq>aatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaagttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaggccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109424" stop="107694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109124" g_stop="108937" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107994" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="603" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E305097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109124" e_stop="108937"/>
          <exon e_start="108408" e_stop="107994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCA</genome_strand>
        <mrna_strand>AATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAAGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E730862" ref_strand="+" ref_description="SGN-E730862 [LA25BG03]">
      <seq>cgccctatagtgactcttatgaagccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaccagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgtactttgttcatctaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109554" stop="107695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109254" g_stop="108937" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="336" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="107995" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="750" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E730862" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109254" e_stop="108937"/>
          <exon e_start="108408" e_stop="107995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCC</genome_strand>
        <mrna_strand>ATGAAGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTACCAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E704523" ref_strand="+" ref_description="SGN-E704523 [FA24CB05]">
      <seq>gtcaccgttccattttttttctctctctttcatacccctagggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggggtactttgttcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109630" stop="107700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109330" g_stop="108937" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108000" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="803" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E704523" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109330" e_stop="108937"/>
          <exon e_start="108408" e_stop="108000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTA</genome_strand>
        <mrna_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGGGTACTTTGTTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E319550" ref_strand="+" ref_description="SGN-E319550 [cTOB-15-B11]">
      <seq>ttatctctccacttgtttctatcacaccggcgagcttgtttctgctaacgtcatcatgaacaagcaaagtggccagtctgaaggttatggattcctctaattcaggactcatgcggctgcacaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacaaaatttccgtatgaactgggcatctcttggtgccggtgataggctacatgattcacccggattcacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattgaaacccacgtattcatcagtgaaaggggcctaagttgtgacagatataattacgggacgtaccaagggatatggatttgtcaagatctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109270" stop="107712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108970" g_stop="108937" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108012" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="431" r_length="397" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E319550" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108970" e_stop="108937"/>
          <exon e_start="108408" e_stop="108012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTAC</genome_strand>
        <mrna_strand>TTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAACGTCATCATGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCTAATTCAGGACTCATGCGGCTGCACAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAAAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGATAGGCTACATGATTCACCCGGATTCACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTGAAACCCACGTATTCATCAGTGAAAGGGGCCTAAGTTGTGACAGATATAATTACGGGACGTACCAAGGGATATGGATTTGTCAAGATCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E252203" ref_strand="+" ref_description="SGN-E252203 [cLEG-8-H18]">
      <seq>tctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaagttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109265" stop="107714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108965" g_stop="108937" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108014" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="424" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E252203" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108965" e_stop="108937"/>
          <exon e_start="108408" e_stop="108014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGT</genome_strand>
        <mrna_strand>TCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAAGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E330583" ref_strand="+" ref_description="SGN-E330583 [cTOD-8-M20]">
      <seq>ggattggggactcgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109304" stop="107718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109004" g_stop="108937" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108018" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="459" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E330583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109004" e_stop="108937"/>
          <exon e_start="108408" e_stop="108018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATG</genome_strand>
        <mrna_strand>GGATTGGGGACTCGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E273158" ref_strand="+" ref_description="SGN-E273158 [cLEM-24-B24]">
      <seq>tcgaattcaggagtcatgcggctgcagaagctgttttacaaacgtataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgtcaagttctctgatgagagtgaacaattgcgtgctatgactgaaatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="108647" stop="107718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108347" g_stop="108018" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E273158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108347" e_stop="108018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATG</genome_strand>
        <mrna_strand>TCGAATTCAGGAGTCATGCGGCTGCAGAAGCTGTTTTACAAACGTATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E275418" ref_strand="+" ref_description="SGN-E275418 [cLEN-10-L17]">
      <seq>agtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttatgtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaagggtatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacagattatgtgctacaagagacattcaaacccgtgtattcatcactaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttgccaagttctctgatgagagtgaacaattgcgtgctatgactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109367" stop="107724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109067" g_stop="108937" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108024" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="516" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E275418" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109067" e_stop="108937"/>
          <exon e_start="108408" e_stop="108024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAA</genome_strand>
        <mrna_strand>AGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTATGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGGTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACAGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCACTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGCCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E343575" ref_strand="+" ref_description="SGN-E343575 [cTOF-20-C4]">
      <seq>atcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109583" stop="107769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109283" g_stop="108937" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108069" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="687" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E343575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109283" e_stop="108937"/>
          <exon e_start="108408" e_stop="108069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTG</genome_strand>
        <mrna_strand>ATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E373561" ref_strand="+" ref_description="SGN-E373561 [TUS-31-P12]">
      <seq>tcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgtaacagatagaattactggacgtaccaagggatatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109582" stop="107772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109282" g_stop="108937" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108072" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="683" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E373561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109282" e_stop="108937"/>
          <exon e_start="108408" e_stop="108072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGAT</genome_strand>
        <mrna_strand>TCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E731533" ref_strand="+" ref_description="SGN-E731533 [LA27BG03]">
      <seq>gccctatagtgagtcttatgaagccgcaaatgtggagttgctaaggcagcaagggcacctatgtctatggatctctatcagcagcaagctccgccgacgcagaaacaacgacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttctaggggacagcagcaacaacagccatcgcaaactatggctcaacagtatgtggcgactaattctagccctagctcgaatgatagtccagatgaggttaagtctctttggattggggacttgcagtattggatggatgagagttatctctccagtagttgctatcacaccggtgagcttgattctgctaaggacatcatgaacaagcaaagtggccagtctgaaggttatggattcctctaatgctggagtcatgcggctgcagaaactgttttacaagcatataatggcgccttgatgctgaatgtggaatagaatttccgtatgaactgggcatctcttggtgccggtgacaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcaaaaaaaggtgcaaaagttgtaacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109554" stop="107803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109240" g_stop="108937" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="336" r_length="304" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108103" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="642" r_length="306" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E731533" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109240" e_stop="108937"/>
          <exon e_start="108408" e_stop="108103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGAT</genome_strand>
        <mrna_strand>TGGAGTTGCTAAGGCAGCAAGGGCACCTATGTCTATGGATCTCTATCAGCAGCAAGCTCCGCCGACGCAGAAACAACGACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTAGGGGACAGCAGCAACAACAGCCATCGCAAACTATGGCTCAACAGTATGTGGCGACTAATTCTAGCCCTAGCTCGAATGATAGTCCAGATGAGGTTAAGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCAGTAGTTGCTATCACACCGGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATTCTGCTAAGGACATCATGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCTAATGCTGGAGTCATGCGGCTGCAGAAACTGTTTTACAAGCATATAATGGCGCCTTGATGCTGAATGTGGAATAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGACAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAAAAAAAGGTGCAAAAGTTGTAACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E330233" ref_strand="+" ref_description="SGN-E330233 [cTOD-4-G4]">
      <seq>tcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaagtgcaaaagttgtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109571" stop="107806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109271" g_stop="108937" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108106" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="638" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E330233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109271" e_stop="108937"/>
          <exon e_start="108408" e_stop="108106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACA</genome_strand>
        <mrna_strand>TCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAAGTGCAAAAGTTGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E248428" ref_strand="+" ref_description="SGN-E248428 [cLEG-1-P6]">
      <seq>agcaacaacagccatcgcaaactatgtcttaacagtatgttgcgactaattctagccctggctcgtatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattcatcagtaaaaggtgcaaaagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109400" stop="107810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109100" g_stop="108937" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108110" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="463" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E248428" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109100" e_stop="108937"/>
          <exon e_start="108408" e_stop="108110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGT</genome_strand>
        <mrna_strand>AGCAACAACAGCCATCGCAAACTATGTCTTAACAGTATGTTGCGACTAATTCTAGCCCTGGCTCGTATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E343713" ref_strand="+" ref_description="SGN-E343713 [cTOF-20-L13]">
      <seq>ttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcnaacccgtgtattcatcagtaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109572" stop="107822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109272" g_stop="108937" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108122" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="623" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E343713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109272" e_stop="108937"/>
          <exon e_start="108408" e_stop="108122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGG</genome_strand>
        <mrna_strand>TTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCNAACCCGTGTATTCATCAGTAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E307048" ref_strand="+" ref_description="SGN-E307048 [cLEY-15-M7]">
      <seq>ctcgtgccggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaagagacattcaaacccgtgtattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109589" stop="107833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109296" g_stop="108937" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108133" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="637" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E307048" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109296" e_stop="108937"/>
          <exon e_start="108408" e_stop="108133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCT-AGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCA</genome_strand>
        <mrna_strand>CTCGTGCCGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E270968" ref_strand="+" ref_description="SGN-E270968 [cLEM-22-E21]">
      <seq>tttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgctacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109587" stop="107856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109287" g_stop="108937" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108156" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="604" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E270968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109287" e_stop="108937"/>
          <exon e_start="108408" e_stop="108156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAG</genome_strand>
        <mrna_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E340417" ref_strand="+" ref_description="SGN-E340417 [cTOF-1-E11]">
      <seq>tttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109587" stop="107860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109287" g_stop="108937" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108160" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="600" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E340417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109287" e_stop="108937"/>
          <exon e_start="108408" e_stop="108160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTA</genome_strand>
        <mrna_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E329344" ref_strand="+" ref_description="SGN-E329344 [cTOD-2-L14]">
      <seq>gtcaccgttccattttttttctctctctttcatacccctagggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaagagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtgacggattatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109630" stop="107863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109330" g_stop="108937" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108163" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="640" r_length="246" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E329344" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109330" e_stop="108937"/>
          <exon e_start="108408" e_stop="108163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTG</genome_strand>
        <mrna_strand>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAAGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E270976" ref_strand="+" ref_description="SGN-E270976 [cLEM-22-G23]">
      <seq>gcattttttttttctctctttcatacccctagggtttcatcttggctggttctatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcatcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaagtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaagagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacccgagtacacaatatttgttggtgatttggctgctgatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109620" stop="107874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109321" g_stop="108937" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108174" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="620" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E270976" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109321" e_stop="108937"/>
          <exon e_start="108408" e_stop="108174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGA</genome_strand>
        <mrna_strand>GCATTTTTTTTTTCTCTCTTTCATACCCCTAGGGTTTCATCTTGGCTGGTTCTATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCATCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAAGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAAGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E300160" ref_strand="+" ref_description="SGN-E300160 [cLEW-11-N12]">
      <seq>tcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgccggtgagaggcgagatgattcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109571" stop="107915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109271" g_stop="108937" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108215" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="529" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E300160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109271" e_stop="108937"/>
          <exon e_start="108408" e_stop="108215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACC</genome_strand>
        <mrna_strand>TCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E697433" ref_strand="+" ref_description="SGN-E697433 [FA02DG03]">
      <seq>gcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaaccatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109524" stop="107939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109224" g_stop="108937" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108239" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="458" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E697433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109224" e_stop="108937"/>
          <exon e_start="108408" e_stop="108239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGC</genome_strand>
        <mrna_strand>GCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACCATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E257744" ref_strand="+" ref_description="SGN-E257744 [cLEG-39-B24]">
      <seq>ttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109580" stop="107943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109280" g_stop="108937" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108243" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="510" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E257744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109280" e_stop="108937"/>
          <exon e_start="108408" e_stop="108243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTG</genome_strand>
        <mrna_strand>TTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E306827" ref_strand="+" ref_description="SGN-E306827 [cLEY-11-B19]">
      <seq>tttcatcttagctcgttcgatttcgcctgagaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109587" stop="107948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109287" g_stop="108937" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108248" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="512" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E306827" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109287" e_stop="108937"/>
          <exon e_start="108408" e_stop="108248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATC</genome_strand>
        <mrna_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAGAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E310299" ref_strand="+" ref_description="SGN-E310299 [cTOA-1-O6]">
      <seq>ttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaagaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaactgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109580" stop="107950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109280" g_stop="108937" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108250" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="503" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E310299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109280" e_stop="108937"/>
          <exon e_start="108408" e_stop="108250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCA</genome_strand>
        <mrna_strand>TTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAAGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E697974" ref_strand="+" ref_description="SGN-E697974 [FA04DE04]">
      <seq>cgattttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcacaaactgttttacaaacatataatggcgccttgatgccaaatgtggaacagaatttccgtatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109583" stop="107955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109285" g_stop="108937" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108255" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="503" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E697974" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109285" e_stop="108937"/>
          <exon e_start="108408" e_stop="108255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACT</genome_strand>
        <mrna_strand>CGATTTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCACAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E247314" ref_strand="+" ref_description="SGN-E247314 [cLEF-46-H5]">
      <seq>gctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaagaacaagcaaagtggccagtctgaaagttatggattcctcgaattcaagagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgccaaatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109577" stop="107975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109277" g_stop="108937" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108275" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="475" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E247314" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109277" e_stop="108937"/>
          <exon e_start="108408" e_stop="108275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGA</genome_strand>
        <mrna_strand>GCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAAGAACAAGCAAAGTGGCCAGTCTGAAAGTTATGGATTCCTCGAATTCAAGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E292115" ref_strand="+" ref_description="SGN-E292115 [cLET-1-K3]">
      <seq>tcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109582" stop="107984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109282" g_stop="108937" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108284" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="471" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E292115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109282" e_stop="108937"/>
          <exon e_start="108408" e_stop="108284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCC</genome_strand>
        <mrna_strand>TCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E283609" ref_strand="+" ref_description="SGN-E283609 [cLES-1-I13]">
      <seq>tcgttcgatttttcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcagaaactgttttacaaacatataatggcgccttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109575" stop="107986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109275" g_stop="108937" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108286" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E283609" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109275" e_stop="108937"/>
          <exon e_start="108408" e_stop="108286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATG</genome_strand>
        <mrna_strand>TCGTTCGATTTTTCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E294925" ref_strand="+" ref_description="SGN-E294925 [cLET-17-O1]">
      <seq>gatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcggaaactgttttacaaacatataatggcgccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109569" stop="107987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109269" g_stop="108937" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108287" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="455" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E294925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109269" e_stop="108937"/>
          <exon e_start="108408" e_stop="108287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGAT</genome_strand>
        <mrna_strand>GATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCGGAAACTGTTTTACAAACATATAATGGCGCCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E294926" ref_strand="+" ref_description="SGN-E294926 [cLET-17-O1]">
      <seq>gatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctgaaggttatggattcctcgaattcaggagtcatgcggctgcggaaactgttttacaaacatataatggcgccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109569" stop="107987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109269" g_stop="108937" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108287" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="455" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E294926" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109269" e_stop="108937"/>
          <exon e_start="108408" e_stop="108287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGAT</genome_strand>
        <mrna_strand>GATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCGGAAACTGTTTTACAAACATATAATGGCGCCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E269729" ref_strand="+" ref_description="SGN-E269729 [cLEM-17-H17]">
      <seq>tttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcaggaacaagcaaagtggccagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109587" stop="108063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109287" g_stop="108937" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108363" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="397" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E269729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109287" e_stop="108937"/>
          <exon e_start="108408" e_stop="108363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTG</genome_strand>
        <mrna_strand>TTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E335663" ref_strand="+" ref_description="SGN-E335663 [cTOE-8-P17]">
      <seq>agggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgctaaggtcatcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109591" stop="108085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109291" g_stop="108937" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108408" g_stop="108385" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="379" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E335663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109291" e_stop="108937"/>
          <exon e_start="108408" e_stop="108385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAGGTAATTTACTATTCGTTTTTTCTGCAATTTTTAGAGGACGATGGTTCAATTAATTGAGAAATTAATATTAGGAAGTTCTGATTTCATAGGTGGTTATAGAGCTTGGTGATGTTGTTTATGCTACGAAAATGATATCTTATTTGTGATACAGTATATGATGTTTTTTGGGAGATGATAGTTTAAAGTTCTTTCATTTTCATGTCAAGCCTGCCGATTGCATTTGTACGTGGAGTCGATTGGATTTGGAAAGATTGCCTCGTCTTTTAAATTACCCTTCTGCCTTTGGTTGCAATTTTTTTATGTGGCTTAGGTGATTGGTGGAAGAGGATAGGGTTGGAAACTAATGTCAAAGATTTGGAAAAAAATTGAAAACTTGGTGGTGAATTTAGAATATGTGTTGAGGGGTTTGAAAGTTTCCTTAAAGGAAAGGGTGGAAACCAATGGGAAAGATCAATATTTGCCTTAATTATATTGGCTTATATTTTTTTAATTTGCACTATGATGATGGCTTTATTGTTTTTTCTGCAGCTTGTTTCTGCTAAGGTCATCAGG</genome_strand>
        <mrna_strand>AGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTTCTGCTAAGGTCATCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E272381" ref_strand="+" ref_description="SGN-E272381 [cLEM-19-A24]">
      <seq>ttttttttctctctctttcatacccctggggtttcatcttagctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttgtttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109618" stop="108627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109318" g_stop="108937" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E272381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109318" e_stop="108937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG</genome_strand>
        <mrna_strand>TTTTTTTTCTCTCTCTTTCATACCCCTGGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E245905" ref_strand="+" ref_description="SGN-E245905 [cLEF-51-O2]">
      <seq>tcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctccacttgtttctatcacaccggcgagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109575" stop="108635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109275" g_stop="108937" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E245905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109275" e_stop="108937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG</genome_strand>
        <mrna_strand>TCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E270332" ref_strand="+" ref_description="SGN-E270332 [cLEM-1-C17]">
      <seq>gctcgttcgatttcgcctgaaaaatgatgccacaaagtggagttgctcagccagcaatggcacctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatgagagttatctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109577" stop="108662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109277" g_stop="108962" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E270332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109277" e_stop="108962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTC</genome_strand>
        <mrna_strand>GCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E206620" ref_strand="+" ref_description="SGN-E206620 [cLEC-31-D9]">
      <seq>cctatgtcaatggatcagtatcagcagcaagctccgccgacgcagcagcaacaacaatggatgatgcaacctccgcaagctcaacaacctcaatttcaaccttcttggggtcagcagcaacaacagccatcgcaaactatgtctcaacagtatgttgcgactaattctagccctagctcgaatgttaatccaaatgaggttaggtctctttggattggggacttgcagtattggatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="109515" stop="108675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109215" g_stop="108975" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E206620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109215" e_stop="108975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATG</genome_strand>
        <mrna_strand>CCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E703969" ref_strand="+" ref_description="SGN-E703969 [FA23AA01]">
      <seq>gttggatgcatcataatgtctcccacaagggagttagcaggtcaactttttgaagtacttaaatctgttgggaaacatcaaggcttcagtgctggccttctgattggtggccgcaaagatgttgatgctgaaaaagaacatgttaatggattgaacatcctggtctgtactcctggtcggcttcttcagcatatggatgagacaccaaattttgattgttcacaacttcaggttttagttcttgatgaagcagatcgtattcttgatgtggggtttaagagggatctaaatgcaatcatttcacaattgcctaagcataggcagaccttattgttttcagcaacccagaccaagtctgtccaagatctggcaaggctcagcctgaaagaccctgaatatttgggtgtacacgaggagtccgatactgcgactcccaaccgcttacaacaaacagcaatgcttgttcctcttgataagaaatttgacatgttgtggagttttataaaggcacatcttaactcaaggatattggttttcctgtcaagctgcaagcaggtaaaatttgtttttgaaactttcaaaaaactccgtcctgggattcccctcaagtgtcttcatggaaggatgaagncagatagaaggatgagaatttattcccaattttgtgaacaacgttctgttctgttctcccactgatgtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="113843" stop="111746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113543" g_stop="113313" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113312" i_stop="112810" i_length="503">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112809" g_stop="112486" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="555" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112485" i_stop="112194" i_length="292">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112193" g_stop="112046" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="703" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E703969" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113543" e_stop="113313"/>
          <exon e_start="112809" e_stop="112486"/>
          <exon e_start="112193" e_stop="112046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAGGTCCAGTTAACAACACTTTCTCCTCTCCTTTCCTAAGGCTCTTTTACCATGTCTTGTCCTTGATAAGAGGCAGGGAGTAAATACTGCATCATCAAGAATTAGTTTCTGATTTGCTCCTACTTTATTAATGTTAGTGTAGACTACCTTCCACGAAAACAATGCTATAGTTTGCTCATCACAGCGTACTAATTATGATTGTATAGCATCTAGGGACAGATTGGCTCCCTCCTTTTTTACCTTGGTGGGGTTTGGACCTGCTTCATTTTCCTTTTCTCTGCTATGTTTAGTGGAAGCATAGCTATTGAAAGGTTGTCTGTTGATGCTACTACAGTTTTTGAAATTATTGTCTTTTATTTATTATTTATTCTATTTCAATTGTTTCTTCAAAGAGACATCCTTTCTTTTGTGAAATCACTTGTCTAACTGTCTTCATCCTCTGCTTTAGAATCATGCATGTTAATTTAGTTGTTGACTTGGGTGCATCTTTCCTGGCCAGGGAACAGGTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAGGTATCTGAACTTCTTCTTGGGGTTCGGTGAAATTGAGAATTCACACTTCATATTGAACGTCTTATTGTAAGATGACATGAATATTGCACCTAATCTTAGATTGCTGTTGATTTTAGTACCTAACATCAACAAGCACTAATGACCTTTGCTATATCACCTGTTTTCGAAAAGGAAAATTATCTATCTGCTATATTGAATCGGGTTTCAGAGTATTCAACAGCTAAAACTTTTGCTCTTAATTTTCTGGTGATTTGATTTGTTCTGTCATTTTTTACTGTTCCCAATTCAACAGGTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGCAAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCT-CCACTGATGTTGCTT</genome_strand>
        <mrna_strand>GTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAG....................................................................................................................................................................................................................................................................................................GTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGNCAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCTCCCACTGATG-TGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E248542" ref_strand="+" ref_description="SGN-E248542 [cLEF-59-F20]">
      <seq>gtcgcttgagccattaccacataaagctccggttggacgtcttccggatggttcattctctaggtatgctggttgtgataggttcagtcagttgccggtttctaagaaaactaaagatgggttaactcagtgcaaatacaaaactatgaccgatattcaaagggcttctctgccacactctctttgcggccgtgatattcttggtgcggcgaaaactggttctggaaagactttggcttttgttattccggtgctagagaaattgtataaagctcgatggggaccagaggacggtgttggatgcatcataatgtctcccacaagggagttagcaggtcaactttttgaagtacttaaatctgttgggaaacatcaaggcttcagtgctggccttctgattggtggccgcaaagatgttgatgctgaaaaagaacatgttaatggattgaacatcctggtctgtactcctggtcggcttcttcagcatatggatgagacaccaaattttgattgttcacaacttcaggttttagttcttgatgaagcagatcgtattcttgatgtggggtttaagaaggatctaaatgcaatcatttcacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="114539" stop="112432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114239" g_stop="113990" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113588" g_stop="113313" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="526" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113312" i_stop="112810" i_length="503">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112809" g_stop="112732" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="604" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E248542" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114239" e_stop="113990"/>
          <exon e_start="113588" e_stop="113313"/>
          <exon e_start="112809" e_stop="112732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCGGTACGTCTTGAGTTAATAATCGAAAACACAGCTAAAGTATCCATTTTTCTGAGTTTCATAGCTGAACTATCAGGTTCCCTAGCTGAATTATAAACAACTGTTTGTCAAAACACAACTCATCATCCCACCATCATTGATAGTTGATGCTTGTTATGATAAAAAGCTGGTGATATTTGTTGTGCAGTTATTCAGTTGGGTTATGGTAAGAATGTTGGCTTCACATTCTCTTATGTGTTTGCTGCTTCGATATTCAATTTGTTAATTGAAATGTTGCTTCCATAGTTCCATCGTTTTTTTTTTTTGCGCTTTGGTGCTTGAATCTCTTCGTTATTTACTAGTGTAGTTTCTTGGTTTTTTACCATTTTAATAAATTCAGTCACTTAATTAGATTTCATTTCTAGGTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAGGTCCAGTTAACAACACTTTCTCCTCTCCTTTCCTAAGGCTCTTTTACCATGTCTTGTCCTTGATAAGAGGCAGGGAGTAAATACTGCATCATCAAGAATTAGTTTCTGATTTGCTCCTACTTTATTAATGTTAGTGTAGACTACCTTCCACGAAAACAATGCTATAGTTTGCTCATCACAGCGTACTAATTATGATTGTATAGCATCTAGGGACAGATTGGCTCCCTCCTTTTTTACCTTGGTGGGGTTTGGACCTGCTTCATTTTCCTTTTCTCTGCTATGTTTAGTGGAAGCATAGCTATTGAAAGGTTGTCTGTTGATGCTACTACAGTTTTTGAAATTATTGTCTTTTATTTATTATTTATTCTATTTCAATTGTTTCTTCAAAGAGACATCCTTTCTTTTGTGAAATCACTTGTCTAACTGTCTTCATCCTCTGCTTTAGAATCATGCATGTTAATTTAGTTGTTGACTTGGGTGCATCTTTCCTGGCCAGGGAACAGGTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTG</genome_strand>
        <mrna_strand>GTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAAGGATCTAAATGCAATCATTTCACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E333983" ref_strand="+" ref_description="SGN-E333983 [cTOD-24-E3]">
      <seq>tttaattctcgccggccgttcatattttgctcaccggcgggacacttccatcaataagcgattgcaaaaggtatgggaaagcatgcacctaagtcacggaaagttaaaatacagaatcggttatcagaggttcatgaaattgagcttctggaggaatggatagaatcaggtaaaccggaatccggttcaaatccgttgtcgcttgagccattaccacataaagctccggttggacgtcttccggatggttcattctctaggtatgctggttgtgataggttcagtcagttgccggtttctaagaaaactaaagatgggttaactcagtgcaaatacaaaactatgaccgatattcaaagggcttctctgccacactctctttgcggccgtgatattcttggtgcggcgaaaaactggttctggaaagactttggcttttgttattccggtgctagagaaattgtataaagctcgatggggaccagaggacggtgttggatgcatcataatgtctcccacaagggagttagcaggtcaactttttgaagtacttnaatctgttnggaaacatcaaggcttcagtgctggccttctgattggtggccgcaaagatgttgatgctgaaaaagacatgntaatggatgaaacatctggtctgtactcctggtcggcttnctcagcatatggatgagacaccaaattttgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="114736" stop="113025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114436" g_stop="113990" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401">
            <donor d_prob="0.537" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113588" g_stop="113325" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="710" r_length="262" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E333983" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114436" e_stop="113990"/>
          <exon e_start="113588" e_stop="113325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCG-AAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCGGTACGTCTTGAGTTAATAATCGAAAACACAGCTAAAGTATCCATTTTTCTGAGTTTCATAGCTGAACTATCAGGTTCCCTAGCTGAATTATAAACAACTGTTTGTCAAAACACAACTCATCATCCCACCATCATTGATAGTTGATGCTTGTTATGATAAAAAGCTGGTGATATTTGTTGTGCAGTTATTCAGTTGGGTTATGGTAAGAATGTTGGCTTCACATTCTCTTATGTGTTTGCTGCTTCGATATTCAATTTGTTAATTGAAATGTTGCTTCCATAGTTCCATCGTTTTTTTTTTTTGCGCTTTGGTGCTTGAATCTCTTCGTTATTTACTAGTGTAGTTTCTTGGTTTTTTACCATTTTAATAAATTCAGTCACTTAATTAGATTTCATTTCTAGGTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGT</genome_strand>
        <mrna_strand>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTNAATCTGTTNGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAG-ACATGNTAATGGATGAAACAT-CTGGTCTGTACTCCTGGTCGGCTTNCTCAGCATATGGATGAGACACCAAATTTTGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E249269" ref_strand="+" ref_description="SGN-E249269 [cLEF-50-H4]">
      <seq>aggtatgggaaagcatgcacctaagtcacggaaagttaaaatacagaatcggttatcagaggttcatgaaattgagcttctggaggaatggatagaatcaggtaaaccggaatccggttcaaatccgttgtcgcttgagccattaccacataaagctccggttggacgtcttccggatggttcattctctaagtatgctggttgtgataggttcagtcagttgccggtttctaagaaaactaaagatgggttaactcagtgcaaatacaaaactatgaccgatattcaaagggcttctctgccacactctctttgcggccgtgatattcttggtgcggcgaaaactggttctggaaagactttggcttttgttattccggtgctagagaaattgtataaagctcgatggggaccagaggacggtgttggatgcatcataatgtctcccacaagggagttagcaggtcaactttttgaagtacttaaatctgttgggaaacatcaaggcttcagtgctggccttctgattggtggccgcaaagatgttgatgctgaaaaagaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="114668" stop="113102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114368" g_stop="113990" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401">
            <donor d_prob="0.537" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113588" g_stop="113402" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="566" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E249269" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114368" e_stop="113990"/>
          <exon e_start="113588" e_stop="113402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCGGTACGTCTTGAGTTAATAATCGAAAACACAGCTAAAGTATCCATTTTTCTGAGTTTCATAGCTGAACTATCAGGTTCCCTAGCTGAATTATAAACAACTGTTTGTCAAAACACAACTCATCATCCCACCATCATTGATAGTTGATGCTTGTTATGATAAAAAGCTGGTGATATTTGTTGTGCAGTTATTCAGTTGGGTTATGGTAAGAATGTTGGCTTCACATTCTCTTATGTGTTTGCTGCTTCGATATTCAATTTGTTAATTGAAATGTTGCTTCCATAGTTCCATCGTTTTTTTTTTTTGCGCTTTGGTGCTTGAATCTCTTCGTTATTTACTAGTGTAGTTTCTTGGTTTTTTACCATTTTAATAAATTCAGTCACTTAATTAGATTTCATTTCTAGGTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATG</genome_strand>
        <mrna_strand>AGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAAGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E552780" ref_strand="+" ref_description="SGN-E552780 [cTSB-5-A13]">
      <seq>gtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgtaaacgtttatggaaactgtttataacggtggattatactttccgttcttatatctgctttgcaatcgtattgctcatgtctgctatgcagtcgtattgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnaaaaaatgggggggggggggccccccccccccccccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131313" stop="20935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131013" g_stop="130780" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130298" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="625" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130297" i_stop="128653" i_length="1645">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.595" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128652" g_stop="128636" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="642" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128635" i_stop="128496" i_length="140">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128495" g_stop="128422" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="716" r_length="74" r_score="0.473"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128421" i_stop="128246" i_length="176">
            <donor d_prob="0.969" d_score="0.42"/>
            <acceptor a_prob="0.425" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128245" g_stop="128211" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="751" r_length="35" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E552780" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131013" e_stop="130780"/>
          <exon e_start="130688" e_stop="130298"/>
          <exon e_start="128652" e_stop="128636"/>
          <exon e_start="128495" e_stop="128422"/>
          <exon e_start="128245" e_stop="128211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGCTTATATCTGCTTTGCAATCTTGAATTAGTTATATCATGTGACTGGCAATGTCAAAGTTGGAGAGCCTGCTTGTGCACAGGTAGCCAATTTTGGTATTGTAAATTCAGGTTTTGACAACACAATTTACTACACCCGAGCCAAGGGTCTTTCGATGGAGGTAAAGGTAAGATTTGCGTACCCTCTATTGTTCCAAGACATACTTGTGAGATTACACTGACTATATCTTGATGTGCATGAGCATGTTTTTAACATGAATACACATATACTTCCTTTTTTGGTTCATCTCGAATATACTTTGCATACCCTCTATCCTTTCTTTTTTGGTTCATCTTGAATATACTTTTGCATACCCCCTCTATCCTTTTGAGACATACTTGTGAGATTACATAGAGTATATCTTGATGTGCATGAACATGTTTTAAACAAGATCACTCAGATACTTCCTTTTTTGGTTCATCTCGAATATAATTTGCATACCCTCTATCTTTGATGTGCATGAACATGTTTTTAACAGGATTATTCAGATACTTCCTTTTTTGGTTCATCTTGAATATAATATGCATACCCTCTATCTTTTCGAGACATACTTGTGAGATTACAAGGAGTATATCTTGATGTGCATGAACATGTTTTTAACATAAATTACTCAAATACTTCTCCTTTCTTCTCCTTTCGAGACATACTTGTGAGAGTACACCGAGCATATCTTGATGTGCATGAACATGTTTTTAACAGTATTATTCAGATACTTCTCCTTTCGAGACATACTTGTGAAATTACACCAAGCATATTTTGATGTGCATGAACATGTTTTTAACATGATTACTCAGATAGTTCCTTTTTTGGTTCATCTTGAATATAATCTACGTACCCTTTATCTTTTTGAAACGTACTTGTGAGATTAAAAAAAGTATATCTTGATGTGCATGAACATGTATTTAACAGGATTACTCAGATACTTCTCCTTTCGAGACATACTTGTGAGATTGCACCGAGTATATCTTAATGTGCATGAACATGATTTTAACGGGATTACTAAGATACTTCTCCTTTCGAGACATACTTGTGAGATTACACCGAGCATATCTTGATGTGCATGAACATGTTTTTAATAGGATTACTCAGATATTTCTCCTTTCGAGACATACTTGGGAGATTACACATAGCATATCTTGATGTGCATGAACATATTTTTCACAGGATTACTCAGATACTTTTGTGAGATTACACAGAGTATATCTTGATGTACATGAACATGTTTTTAACAGAATTACTCAAATACTTTCTTTTTTGGTTCATCATGAATATACTTGATTTCGATATTCACCAAACTAACATGTTATAGAATGGACACCAATAACATTACAGCAATTTTTTATCAAAAAAGATTAGGACCTATCTTAGAATAGTATACAATTGAATCCAAGAAATGGCTTTGGTCAAAATATAACTTTGACACTGAAAATGAAACGTGGAAAAAATTCTTACAATAAATAGTTCAATATATGATAGTTTTTGATAAACCAAATCCATATTAGCGTAATGCATCAAACTTAAAGAGCTATAACAAAGCTATTAGTTTCAAGCTTAGTGTATCATACAAAAAGTGCAACTTTTCGACGCCCAAAAATTTGTGTTGCTGCAGTTCAAAACGGAAAATCCATCTCCTTTGGATATCACAACCAAAACAAGAACCGCCCGAGTGAACTCTTCCTCTACCTCCAAACAAAAACAACTTCATGCGTAACTCAATATACAATGTTAATGCCTCTCCCTAACAAAGAATAACCTGCTCATACTACAAGATCGAAAACTTTAGAAAAGAATCATGCTGCCAGACATTGAGAAGAAACGAAAAAGGAATCTCAATAGGCAGGCATCATTTCAACTACAGAAGTATATTCACGCGAACTTGTTAGGCACAAAACCATTAGGTACTGGGAATTGCATAGGCCGCATAACAGGAAAAGACGACTGTGTAATAGGAATGCTTGGGATAGTGAATGGTTGTTGTAGCCCTGTTATAACTGGGGGAGCCATATACAACTGCAGTGCTTGTGGTGCTGTACTTCCTGCAGCAAGGGATG</genome_strand>
        <mrna_strand>GTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAA............................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAATGGGG................................................................................................................................................................................GGGGGGGGGCCCCCCCCCCCCCCCCCCGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E552629" ref_strand="+" ref_description="SGN-E552629 [cTSB-4-I2]">
      <seq>gtggcctacgtgtctcaaggatctgtggctggcaaaagaaaatgctgaaaacaatgaggcctctaacaggttgccagctgaacattcacctgtgatacccaaactacatactgtgaatcaggttcccgtcagcaaaaccaaatgaaccaacaatccccactcttcctacccaggatacatctgttcctaaactgctgatgaactatggtactggtatgatgaccgaacttctacaggctgtgcatgaaaatctgaaagagaaccagctgcttcgtactggaaaatcacgacttggtgtgatgaaaactccaacaactgatggcagtatggaggatactagcattcagtaacatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgtaaacgtttatggaaactgtttataacggtggattatactttccgttcttatatctgctttgcaatcgtattgctcatgtctgctatgcagtcgtattgcttaanaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131313" stop="129995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131013" g_stop="130780" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130296" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="629" r_length="393" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="638" polyA_stop="679"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E552629" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131013" e_stop="130780"/>
          <exon e_start="130688" e_stop="130296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCCTACGTGTCTCAAGGATCTG-GGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCC-TCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGCTT</genome_strand>
        <mrna_strand>GTGGCCTACGTGTCTCAAGGATCTGTGGCTGGCAAAAGAAAATGCTGAAAACAATGAGGCCTCTAACAGGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTACATACTGTGAATCAGGTTCCCGTCAGCAAAACCAAATGAACCAACAATCCCCACTCTTCCTACCCAGGATACATCTGTTCCTAAACTGCTGATGAACTATGGTACTGGTATGATGACCGAACTTCTACAG...........................................................................................GCTGTGCATGAAAATCTGAAAGAGAACCAGCTGCTTCGTACTGGAAAATCACGACTTGGTGTGATGAAAACTCCAACAACTGATGGCAGTATGGAGGATACTAGCATTCAGTAACATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E369118" ref_strand="-" ref_description="SGN-E369118 [TUS-23-K10]">
      <seq>tagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgtaaacgtttatggaaactgtttataacggtggattatactttccgttcttatatctgctttgcaatcgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131389" stop="130028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131089" g_stop="130780" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130320" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="679" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E369118" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369118" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131089" e_stop="130780"/>
          <exon e_start="130688" e_stop="130320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCAT</genome_strand>
        <mrna_strand>TAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E550536" ref_strand="-" ref_description="SGN-E550536 [TUS-6-L23]">
      <seq>aacaaagtagcaataggtactgggcagaatgaaggctatcttagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctataacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgtaaacgtttatggaaactgttgataacggtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131430" stop="130064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131130" g_stop="130780" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130364" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="676" r_length="325" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E550536" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131130" e_stop="130780"/>
          <exon e_start="130688" e_stop="130364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGAT</genome_strand>
        <mrna_strand>AACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTATAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTGATAACGGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E735058" ref_strand="+" ref_description="SGN-E735058 [LB14BC09]">
      <seq>gtctaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgtaaacgtttatggaaactgtttataacggtgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131370" stop="130060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131070" g_stop="130780" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130370" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="610" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="614" polyA_stop="627"/>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E735058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131070" e_stop="130780"/>
          <exon e_start="130688" e_stop="130370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACG</genome_strand>
        <mrna_strand>GTCTAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E346610" ref_strand="+" ref_description="SGN-E346610 [cTOF-28-D14]">
      <seq>tggacagctaccaccagaaccaactcgtgaaatacttgcttcacaagctcaagttggcaacaaagtagcaataggtactgggcagaatgaaggctatcttagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacatgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaagttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctctgaaactcacatcccgtagactctggcagactgtatagtcaatagtgatactaatgtctcaaaatagctcctggttggcattagccaaaccttgagaagcttatctttatatgtttatcagttcagattaaaatcttgcatagacgttaaacgtttatggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131488" stop="130080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131188" g_stop="130780" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130380" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="719" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E346610" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131188" e_stop="130780"/>
          <exon e_start="130688" e_stop="130380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACG-TAAACGTTTATGGAAACT</genome_strand>
        <mrna_strand>TGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACATGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAAGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTTAAACGTTTATGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E710041" ref_strand="+" ref_description="SGN-E710041 [FA54AB06]">
      <seq>cgctcagaagaaatgaggttcgtcctccggctgtaaaccagcttcaggcgtatggccctagggctgagcgcaatggatcagttaagcttggatctaggtcctcaaaaagcaaacaggtaataatgcatccctcagtccctccagtgggtgtcagaggcacagtagttcctgttgtgctacaacctgtcaatttaacaaatggactagcatctagtcaaagctctgcatcccaagcttcaaacagggagtctataagggagaaagatgttcagatggttaagccattggctatgctgccacctgatggaccagtaacccctggacagctaccaccagaaccaactcgtgaaatacttgcttcacaagctcaagttggcaacaaagtagcaataggtactgggcagaatgaaggctatcttagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcatagcaggaacatccgcatattctcatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131609" stop="130243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131507" g_stop="130780" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130543" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="874" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E710041" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131507" e_stop="130780"/>
          <exon e_start="130688" e_stop="130543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCATAAGAAATGAGGTTCGTCCTCCGGCTGTAAACCAGCTTCAGGCGTATGGCCCTAGGGCTGAGCGCAATGGATCAGTTAAGCTTGGATCTAGGTCCTCAAAAAGCAAACAGGTAATAATGCATCCCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCT</genome_strand>
        <mrna_strand>CGCTCAGAAGAAATGAGGTTCGTCCTCCGGCTGTAAACCAGCTTCAGGCGTATGGCCCTAGGGCTGAGCGCAATGGATCAGTTAAGCTTGGATCTAGGTCCTCAAAAAGCAAACAGGTAATAATGCATCCCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E369119" ref_strand="+" ref_description="SGN-E369119 [TUS-23-K10]">
      <seq>ctcagtccctccagtgggtgtcagaggcacagtagttcctgttgtgctacaacctgtcaatttaacaaatggactagcatctagtcaaagctctgcatcccaagcttcaaacagggagtctataagggagaaagatgttcagatggttaagccattggctatgctgccacctgatggaccagtaacccctggacagctaccaccagaaccaactcgtgaaatacttgcttcacaagctcaagttggcaacaaagtagcaataggtactgggcagaatgaaggctatcttagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccgaacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtactggagaatcaggacttggtgtgatgaagactccagcaactgatggcagtatggaggagactagcattcagtagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131609" stop="130272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131377" g_stop="130780" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130572" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="715" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E369119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131377" e_stop="130780"/>
          <exon e_start="130688" e_stop="130572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCAT</genome_strand>
        <mrna_strand>CTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E549858" ref_strand="+" ref_description="SGN-E549858 [TUS-6-L23]">
      <seq>cctcagtccctccagtgggtgtcagaggcacagtagttcctgttgtgctaccacctgtcaatttaacaaatggactagcatctagtcaaagctctgcatcccaagcttcaaacagggagtctataagggagaaagatgttcagatggttaagccattggctatgctgccacctgatggaccagtaacccctggacagctaccaccagaaccaactcgtgaaatacttgcttcacaagctcaagttggcaacaaagtagcaataggtactgggcagaatgaaggctatcttagcaagggaggagaagctgtcaaagaggaaaaggcgcagccagctgcatcaaccaacatagcaatacctgttgcagtggcctacgtgtctcaaggatctgggctggcaaaagaagatactggaaacaatgaggcctctaacaagttgccagctgaacattcacctgtgatacccaaactagatactgtgaatcaggttccctcagcaaaaccaagtgaaccagcaatccccactcttcctacccaggctacatctgttcctaagctgctgatgaactatggtactggcaggatgaccggacttctacaggctgtgcaggaaaatctgaaggagaaccagctgcttcgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131609" stop="130347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131378" g_stop="130780" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130688" g_stop="130647" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="641" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E549858" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131378" e_stop="130780"/>
          <exon e_start="130688" e_stop="130647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAGGTAAATTTACCAAAACTTCAATATTCATTTTGAGCTCTAGAGTTTACTATGTCAATAAAGATCTAAGTCATGAAATTTTTCCTGCATGAAGGCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACT</genome_strand>
        <mrna_strand>CCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACCACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGGACTTCTACAG...........................................................................................GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5FMV0T/sgn_ests_tomato" ref_id="SGN-E246202" ref_strand="+" ref_description="SGN-E246202 [cLEF-40-H14]">
      <seq>ctcagtccctccagtgggtgtcagaggcacagtagttcgtgttgtgctacaacctgtcaatttaacaaatggactagcatctagtcaaagctctgcatcccaagcttcaaacagggagtctataagggagaaagatgttcagatggttaagccattggctatgctgccacctgatggaccagtaacccctggacagctaccaccagaaccaactcgtgaaatacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0059P18-6dO4I/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0059P18.1" temp_strand="-" temp_description="C07HBa0059P18.1  AC212622.1 htgs_phase:1 submitted_to_sgn_as:gi|158262118|gb|AC212622.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0059P18, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces">
        <position start="131609" stop="130850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131377" g_stop="131150" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0059P18.1" gen_strand="-" ref_id="SGN-E246202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0059P18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131377" e_stop="131150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGC</genome_strand>
        <mrna_strand>CTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCGTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>313</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7222" PGL_stop="9390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7222" e_stop="7490"/>
            <exon e_start="8556" e_stop="8643"/>
            <exon e_start="9208" e_stop="9390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.743" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7222" e_stop="7490" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.743" acc_prob="0.718">
            <gDNA_intron_boundary i_start="7491" i_stop="8555" i_length="1065"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8556" e_stop="8643" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8644" i_stop="9207" i_length="564"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="9208" e_stop="9390" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7222" stop="7490"/>
              <exon start="8556" stop="8643"/>
              <exon start="9208" stop="9390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733308" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTTGATCTCTGAAATCTTGACTAAAAATTTGCTAAAAAAAATAAAAAAATCAAATCTTGGTAAAAGATGCATGATTTCTGCTTTACGATCCCTTATGGGTTAATTCTGGTGACTGGTGGTGTCATGGGATATGCCAGTAAAGGAAGCACAGCTTCACTTGCTGGAGGTGTTGGTACTGGATTTGCTCTGATCTTAGCGGGTTACTTGAGTCTGCAAGCATTTCACAAACGCAAAAATTCATACTTTGCCTTGATTCTTGAAACTG : CTTGTGCAGCCATGTTAACATGGGTTATGGGGCAGCGGTACATGCAAACTTCAAAACTAATGCCGGCTGGTGCTGTTGCTGGTATCAG : TGCACTCATGACTGGGTTTTACCTGTACAAAATTGCCACAAGAGGAAACCATTTTCCACTTAAAACTGAGTAATACCATATTATTTATTTTGGGGTTCCAATTTCATACTGTATGTATCAAGCTAAAAATGTATTCTTATTTTATACTCAATTTTATAGAATTCAATGGATCAACTCTTATTT</gDNA_template>
            <first_frame> L  F  *  S  L  K  S  *  L  K  I  C  *  K  K  *  K  N  Q  I  L  V  K  D  A  *  F  L  L  Y  D  P  L  W  V  N  S  G  D  W  W  C  H  G  I  C  Q  *  R  K  H  S  F  T  C  W  R  C  W  Y  W  I  C  S  D  L  S  G  L  L  E  S  A  S  I  S  Q  T  Q  K  F  I  L  C  L  D  S  *  N  C :   L  C  S  H  V  N  M  G  Y  G  A  A  V  H  A  N  F  K  T  N  A  G  W  C  C  C  W  Y  Q  :  C  T  H  D  W  V  L  P  V  Q  N  C  H  K  R  K  P  F  S  T  *  N  *  V  I  P  Y  Y  L  F  W  G  S  N  F  I  L  Y  V  S  S  *  K  C  I  L  I  L  Y  S  I  L  *  N  S  M  D  Q  L  L  F </first_frame>
            <second_frame>  F  F  D  L  *  N  L  D  *  K  F  A  K  K  N  K  K  I  K  S  W  *  K  M  H  D  F  C  F  T  I  P  Y  G  L  I  L  V  T  G  G  V  M  G  Y  A  S  K  G  S  T  A  S  L  A  G  G  V  G  T  G  F  A  L  I  L  A  G  Y  L  S  L  Q  A  F  H  K  R  K  N  S  Y  F  A  L  I  L  E  T   : A  C  A  A  M  L  T  W  V  M  G  Q  R  Y  M  Q  T  S  K  L  M  P  A  G  A  V  A  G  I  S :   A  L  M  T  G  F  Y  L  Y  K  I  A  T  R  G  N  H  F  P  L  K  T  E  *  Y  H  I  I  Y  F  G  V  P  I  S  Y  C  M  Y  Q  A  K  N  V  F  L  F  Y  T  Q  F  Y  R  I  Q  W  I  N  S  Y   </second_frame>
            <third_frame>   F  L  I  S  E  I  L  T  K  N  L  L  K  K  I  K  K  S  N  L  G  K  R  C  M  I  S  A  L  R  S  L  M  G  *  F  W  *  L  V  V  S  W  D  M  P  V  K  E  A  Q  L  H  L  L  E  V  L  V  L  D  L  L  *  S  *  R  V  T  *  V  C  K  H  F  T  N  A  K  I  H  T  L  P  *  F  L  K  L  :  L  V  Q  P  C  *  H  G  L  W  G  S  G  T  C  K  L  Q  N  *  C  R  L  V  L  L  L  V  S   : V  H  S  *  L  G  F  T  C  T  K  L  P  Q  E  E  T  I  F  H  L  K  L  S  N  T  I  L  F  I  L  G  F  Q  F  H  T  V  C  I  K  L  K  M  Y  S  Y  F  I  L  N  F  I  E  F  N  G  S  T  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7289" stop="7490"/>
                    <exon start="8556" stop="8643"/>
                    <exon start="9208" stop="9280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMHDFCFTIPYGLILVTGGVMGYASKGSTASLAGGVGTGFALILAGYLSLQAFHKRKNSYFALILETACAAMLTWVMGQRYMQTSKLMPAGAVAGISALMTGFYLYKIATRGNHFPLKTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29391" PGL_stop="30418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29391" e_stop="30418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29391" e_stop="30418" e_length="1028"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29391" stop="29923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29904" stop="30418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29904" stop="30411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541354" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29905" stop="30418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGGAAGCTGCTTCGGTGAATATTCGTGATATCAGTGAGTTCACTTATGAACCTCCAAATCCAGATGATATATTCTCAGTGTTTGAGGACCTTAATTTTGTCGAAAGTAATGAAAGGGAGGTTGAGCCATGTCCTGCATACAGTTCTGCTAGCCATCCCTCCAAAATTTGCACATTCAGTCCTGATGACGGTGTATACAACAAAGACAACTTCCTCAGACATTCTCTTGCGTATAATCAGAGTGATTTAGAGGAAGAAGGAAGTGAATGGGAAACAGTGAGCCATCTCGACGAGCAAGGTTCTAGTTATTCTGCTGAAGGAAGCGTCTGTTCTGTCAACAAGAACTGCAGGCACAGCAATGCCTCAATGGAGATAAGTGAAGTATATTCAGGGCAAGGTCGACAACTTAAGAAGGTGTCATCTATATCTAGGCTTTGGAAATCAAACGGAGACAACTACAAAAAGATATCAGCTGATGGAATACACGGGAGGCTATCAAATGGAAGGCTATCGAATGGTGCCACCCTTTCTCCAGATTGTGGTTCTAGTAAAGGCGAATTCAGTCCTTCAGGGAGCTCACTTGACTCGGGCAATCCACAAATAACACGAGGGATGAAAGGGTGCATTGAGTGGCCGCGTAACTCTCACAAGCACAGTTTAAAAGCAAAACTTCTGGAAGCAAGAATGGAGAGCCAGAAGGTCCAGTTACGTCACGTCTTGAAACAAAAGATCTAGAAGACTACTGCTACAAGTTTTGATTTTGCCCGAATCATCGGTCTCACTCAGCTGAGGTATCAATAAAAACTCAAACAGTAGTAGTCCACATTTTATGCTTACTGAAACTTCTTTGTGTATCAATCAGAACTGCTATATAGTAATTTCATGTAATGTAATTTAGAAGATGCATTATTGGCCACTATTTATATCTTTTAAAGGTATGATTTAGTGGCCAATTATTGCATCATTTAACAGAAGTTTCAGTATGAGGAGAAAACAACTTTGTATAATTGAATTCCTTTATTCCTT</gDNA_template>
            <first_frame> N  R  K  L  L  R  *  I  F  V  I  S  V  S  S  L  M  N  L  Q  I  Q  M  I  Y  S  Q  C  L  R  T  L  I  L  S  K  V  M  K  G  R  L  S  H  V  L  H  T  V  L  L  A  I  P  P  K  F  A  H  S  V  L  M  T  V  Y  T  T  K  T  T  S  S  D  I  L  L  R  I  I  R  V  I  *  R  K  K  E  V  N  G  K  Q  *  A  I  S  T  S  K  V  L  V  I  L  L  K  E  A  S  V  L  S  T  R  T  A  G  T  A  M  P  Q  W  R  *  V  K  Y  I  Q  G  K  V  D  N  L  R  R  C  H  L  Y  L  G  F  G  N  Q  T  E  T  T  T  K  R  Y  Q  L  M  E  Y  T  G  G  Y  Q  M  E  G  Y  R  M  V  P  P  F  L  Q  I  V  V  L  V  K  A  N  S  V  L  Q  G  A  H  L  T  R  A  I  H  K  *  H  E  G  *  K  G  A  L  S  G  R  V  T  L  T  S  T  V  *  K  Q  N  F  W  K  Q  E  W  R  A  R  R  S  S  Y  V  T  S  *  N  K  R  S  R  R  L  L  L  Q  V  L  I  L  P  E  S  S  V  S  L  S  *  G  I  N  K  N  S  N  S  S  S  P  H  F  M  L  T  E  T  S  L  C  I  N  Q  N  C  Y  I  V  I  S  C  N  V  I  *  K  M  H  Y  W  P  L  F  I  S  F  K  G  M  I  *  W  P  I  I  A  S  F  N  R  S  F  S  M  R  R  K  Q  L  C  I  I  E  F  L  Y  S   </first_frame>
            <second_frame>  T  G  S  C  F  G  E  Y  S  *  Y  Q  *  V  H  L  *  T  S  K  S  R  *  Y  I  L  S  V  *  G  P  *  F  C  R  K  *  *  K  G  G  *  A  M  S  C  I  Q  F  C  *  P  S  L  Q  N  L  H  I  Q  S  *  *  R  C  I  Q  Q  R  Q  L  P  Q  T  F  S  C  V  *  S  E  *  F  R  G  R  R  K  *  M  G  N  S  E  P  S  R  R  A  R  F  *  L  F  C  *  R  K  R  L  F  C  Q  Q  E  L  Q  A  Q  Q  C  L  N  G  D  K  *  S  I  F  R  A  R  S  T  T  *  E  G  V  I  Y  I  *  A  L  E  I  K  R  R  Q  L  Q  K  D  I  S  *  W  N  T  R  E  A  I  K  W  K  A  I  E  W  C  H  P  F  S  R  L  W  F  *  *  R  R  I  Q  S  F  R  E  L  T  *  L  G  Q  S  T  N  N  T  R  D  E  R  V  H  *  V  A  A  *  L  S  Q  A  Q  F  K  S  K  T  S  G  S  K  N  G  E  P  E  G  P  V  T  S  R  L  E  T  K  D  L  E  D  Y  C  Y  K  F  *  F  C  P  N  H  R  S  H  S  A  E  V  S  I  K  T  Q  T  V  V  V  H  I  L  C  L  L  K  L  L  C  V  S  I  R  T  A  I  *  *  F  H  V  M  *  F  R  R  C  I  I  G  H  Y  L  Y  L  L  K  V  *  F  S  G  Q  L  L  H  H  L  T  E  V  S  V  *  G  E  N  N  F  V  *  L  N  S  F  I  P  </second_frame>
            <third_frame>   Q  E  A  A  S  V  N  I  R  D  I  S  E  F  T  Y  E  P  P  N  P  D  D  I  F  S  V  F  E  D  L  N  F  V  E  S  N  E  R  E  V  E  P  C  P  A  Y  S  S  A  S  H  P  S  K  I  C  T  F  S  P  D  D  G  V  Y  N  K  D  N  F  L  R  H  S  L  A  Y  N  Q  S  D  L  E  E  E  G  S  E  W  E  T  V  S  H  L  D  E  Q  G  S  S  Y  S  A  E  G  S  V  C  S  V  N  K  N  C  R  H  S  N  A  S  M  E  I  S  E  V  Y  S  G  Q  G  R  Q  L  K  K  V  S  S  I  S  R  L  W  K  S  N  G  D  N  Y  K  K  I  S  A  D  G  I  H  G  R  L  S  N  G  R  L  S  N  G  A  T  L  S  P  D  C  G  S  S  K  G  E  F  S  P  S  G  S  S  L  D  S  G  N  P  Q  I  T  R  G  M  K  G  C  I  E  W  P  R  N  S  H  K  H  S  L  K  A  K  L  L  E  A  R  M  E  S  Q  K  V  Q  L  R  H  V  L  K  Q  K  I  *  K  T  T  A  T  S  F  D  F  A  R  I  I  G  L  T  Q  L  R  Y  Q  *  K  L  K  Q  *  *  S  T  F  Y  A  Y  *  N  F  F  V  Y  Q  S  E  L  L  Y  S  N  F  M  *  C  N  L  E  D  A  L  L  A  T  I  Y  I  F  *  R  Y  D  L  V  A  N  Y  C  I  I  *  Q  K  F  Q  Y  E  E  K  T  T  L  Y  N  *  I  P  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29393" stop="30127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEAASVNIRDISEFTYEPPNPDDIFSVFEDLNFVESNEREVEPCPAYSSASHPSKICTFSPDDGVYNKDNFLRHSLAYNQSDLEEEGSEWETVSHLDEQGSSYSAEGSVCSVNKNCRHSNASMEISEVYSGQGRQLKKVSSISRLWKSNGDNYKKISADGIHGRLSNGRLSNGATLSPDCGSSKGEFSPSGSSLDSGNPQITRGMKGCIEWPRNSHKHSLKAKLLEARMESQKVQLRHVLKQKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33084" PGL_stop="38164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33084" e_stop="33137"/>
            <exon e_start="33390" e_stop="33461"/>
            <exon e_start="33575" e_stop="33620"/>
            <exon e_start="35402" e_stop="35510"/>
            <exon e_start="36135" e_stop="36226"/>
            <exon e_start="36332" e_stop="36394"/>
            <exon e_start="36996" e_stop="37114"/>
            <exon e_start="37370" e_stop="37445"/>
            <exon e_start="37529" e_stop="38164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.816" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33084" e_stop="33137" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.997">
            <gDNA_intron_boundary i_start="33138" i_stop="33389" i_length="252"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33390" e_stop="33461" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.878" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33462" i_stop="33574" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33575" e_stop="33620" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.945">
            <gDNA_intron_boundary i_start="33621" i_stop="35401" i_length="1781"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35402" e_stop="35510" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="35511" i_stop="36134" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36135" e_stop="36226" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.816">
            <gDNA_intron_boundary i_start="36227" i_stop="36331" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36332" e_stop="36394" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="0.990">
            <gDNA_intron_boundary i_start="36395" i_stop="36995" i_length="601"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36996" e_stop="37114" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37115" i_stop="37369" i_length="255"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37370" e_stop="37445" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="0.965" acc_prob="0.977">
            <gDNA_intron_boundary i_start="37446" i_stop="37528" i_length="83"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="37529" e_stop="38164" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33084" stop="33137"/>
              <exon start="33390" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33088" stop="33137"/>
              <exon start="33390" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33413" stop="33461"/>
              <exon start="33575" stop="33620"/>
              <exon start="35402" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37114"/>
              <exon start="37370" stop="37445"/>
              <exon start="37529" stop="37658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35459" stop="35510"/>
              <exon start="36135" stop="36226"/>
              <exon start="36332" stop="36394"/>
              <exon start="36996" stop="37114"/>
              <exon start="37370" stop="37445"/>
              <exon start="37529" stop="37894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543602" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="38119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37945" stop="38164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCGTCTTTCCACTTTCAATTGTTGTCGAATTAAAGCAATTCCCTGTTTTCTG : GTTGAAGATGGAAGGTTCAGTAGTAAGAAGAGTGATTCCATCTGATAACAGTTGTCTTTTTAATGCTGTTGG : TTATGTGATGGACCGTGATAGAAACAAAGCCCCTGAGCTAAGACAG : GTTATAGCTGGAACAGTTGCCAGTGATCCAGAAAAATATTCTGATGCCTTTCTTGGGAAGTCCAACAAGGAGTATTGTGATTGGATTCTTAACCCAGAGAAATGGGGAG : GGGCCATAGAGCTTTCAATATTGGCTGACCACTACGGACGAGAAATTGCAGCCTATGATATCCAAACAACGCGCTGTGATCTGTATGGACAG : GGAAAGAACTATGAGGAAAGAGTAATGCTGATTTATGATGGACTTCATTACGATGCTTTGGCT : ATGTCCCCTGCTGAAGGAGCTCCGGAGGATTTTGATCAAACAATTTTTTCTGTACAGAGAGATGGGACTGTAGGACCTGCGGAGAGGCTTGCTCTTAATCTGGTTAAGGACCAACAAAG : GAAGAGGAGCTATACTGACACAGCCAACTTCACGTTGCGATGTGGAGTTTGCCAAATTGGGGTCATTGGCCAAAAG : GAAGCTGTAGAGCATGCACAAGCAACTGGACATGTGAACTTCCAGGAATACAAATGAAAGAAACAAGAAACAAAGCAAAACATAATCGTTTACTTCTTTGTACCGGTGAAAACCAATTTCATGCAACTGTCAAGTAGATTTCATTTCTAATCGAAAGGTGTGTGATTTCTGTTAATTTGTTGATGCATTGTTGTGCTATAGAAATTGTGTCCCATTTTAGACAGAACAAAGTGAAACAGAGATACTTAAAGTGTGTATTAGTGGAAGAAATACAACTTTGACATGTATTCGCATTTCTTGTTGATGTATTTGAGACAAGTACTATATGCTATTCTAATGTGTCATTTGACTTTGAGCTTTGTATTACTGTAGCTACGATCAGTAAACGTGGTTATAAACTCGATGAATTCTTATTATGGGGACTGAAAGAGCCCTTTTTTAACAGAATTTATTCATGCTGCACTCTGCAACAATGGAGATTAGAATCTGCAGCAGAGTATCAAGAGACTCTGAATTAAAGACTTAAATCTCCTTTATTTAACTTTAATTTTTGAATCTAAAGTCATAGCTGCCATGGAAGTTGAAGACTTTAATCTGTTTAACACACTGCTATGCAATCAATTTCAATTTTTGCAT</gDNA_template>
            <first_frame> T  R  L  S  T  F  N  C  C  R  I  K  A  I  P  C  F  L  :  V  E  D  G  R  F  S  S  K  K  S  D  S  I  *  *  Q  L  S  F  *  C  C  W  :  L  C  D  G  P  *  *  K  Q  S  P  *  A  K  T   : G  Y  S  W  N  S  C  Q  *  S  R  K  I  F  *  C  L  S  W  E  V  Q  Q  G  V  L  *  L  D  S  *  P  R  E  M  G  R :   G  H  R  A  F  N  I  G  *  P  L  R  T  R  N  C  S  L  *  Y  P  N  N  A  L  *  S  V  W  T   : G  K  E  L  *  G  K  S  N  A  D  L  *  W  T  S  L  R  C  F  G   : Y  V  P  C  *  R  S  S  G  G  F  *  S  N  N  F  F  C  T  E  R  W  D  C  R  T  C  G  E  A  C  S  *  S  G  *  G  P  T  K  :  E  E  E  L  Y  *  H  S  Q  L  H  V  A  M  W  S  L  P  N  W  G  H  W  P  K   : G  S  C  R  A  C  T  S  N  W  T  C  E  L  P  G  I  Q  M  K  E  T  R  N  K  A  K  H  N  R  L  L  L  C  T  G  E  N  Q  F  H  A  T  V  K  *  I  S  F  L  I  E  R  C  V  I  S  V  N  L  L  M  H  C  C  A  I  E  I  V  S  H  F  R  Q  N  K  V  K  Q  R  Y  L  K  C  V  L  V  E  E  I  Q  L  *  H  V  F  A  F  L  V  D  V  F  E  T  S  T  I  C  Y  S  N  V  S  F  D  F  E  L  C  I  T  V  A  T  I  S  K  R  G  Y  K  L  D  E  F  L  L  W  G  L  K  E  P  F  F  N  R  I  Y  S  C  C  T  L  Q  Q  W  R  L  E  S  A  A  E  Y  Q  E  T  L  N  *  R  L  K  S  P  L  F  N  F  N  F  *  I  *  S  H  S  C  H  G  S  *  R  L  *  S  V  *  H  T  A  M  Q  S  I  S  I  F  A  </first_frame>
            <second_frame>  L  V  F  P  L  S  I  V  V  E  L  K  Q  F  P  V  F  W :   L  K  M  E  G  S  V  V  R  R  V  I  P  S  D  N  S  C  L  F  N  A  V  G :   Y  V  M  D  R  D  R  N  K  A  P  E  L  R  Q  :  V  I  A  G  T  V  A  S  D  P  E  K  Y  S  D  A  F  L  G  K  S  N  K  E  Y  C  D  W  I  L  N  P  E  K  W  G   : G  A  I  E  L  S  I  L  A  D  H  Y  G  R  E  I  A  A  Y  D  I  Q  T  T  R  C  D  L  Y  G  Q  :  G  K  N  Y  E  E  R  V  M  L  I  Y  D  G  L  H  Y  D  A  L  A  :  M  S  P  A  E  G  A  P  E  D  F  D  Q  T  I  F  S  V  Q  R  D  G  T  V  G  P  A  E  R  L  A  L  N  L  V  K  D  Q  Q  R :   K  R  S  Y  T  D  T  A  N  F  T  L  R  C  G  V  C  Q  I  G  V  I  G  Q  K  :  E  A  V  E  H  A  Q  A  T  G  H  V  N  F  Q  E  Y  K  *  K  K  Q  E  T  K  Q  N  I  I  V  Y  F  F  V  P  V  K  T  N  F  M  Q  L  S  S  R  F  H  F  *  S  K  G  V  *  F  L  L  I  C  *  C  I  V  V  L  *  K  L  C  P  I  L  D  R  T  K  *  N  R  D  T  *  S  V  Y  *  W  K  K  Y  N  F  D  M  Y  S  H  F  L  L  M  Y  L  R  Q  V  L  Y  A  I  L  M  C  H  L  T  L  S  F  V  L  L  *  L  R  S  V  N  V  V  I  N  S  M  N  S  Y  Y  G  D  *  K  S  P  F  L  T  E  F  I  H  A  A  L  C  N  N  G  D  *  N  L  Q  Q  S  I  K  R  L  *  I  K  D  L  N  L  L  Y  L  T  L  I  F  E  S  K  V  I  A  A  M  E  V  E  D  F  N  L  F  N  T  L  L  C  N  Q  F  Q  F  L  H </second_frame>
            <third_frame>   S  S  F  H  F  Q  L  L  S  N  *  S  N  S  L  F  S   : G  *  R  W  K  V  Q  *  *  E  E  *  F  H  L  I  T  V  V  F  L  M  L  L   : V  M  *  W  T  V  I  E  T  K  P  L  S  *  D  R :   L  *  L  E  Q  L  P  V  I  Q  K  N  I  L  M  P  F  L  G  S  P  T  R  S  I  V  I  G  F  L  T  Q  R  N  G  E  :  G  P  *  S  F  Q  Y  W  L  T  T  T  D  E  K  L  Q  P  M  I  S  K  Q  R  A  V  I  C  M  D  R :   E  R  T  M  R  K  E  *  C  *  F  M  M  D  F  I  T  M  L  W  L :   C  P  L  L  K  E  L  R  R  I  L  I  K  Q  F  F  L  Y  R  E  M  G  L  *  D  L  R  R  G  L  L  L  I  W  L  R  T  N  K   : G  R  G  A  I  L  T  Q  P  T  S  R  C  D  V  E  F  A  K  L  G  S  L  A  K  R :   K  L  *  S  M  H  K  Q  L  D  M  *  T  S  R  N  T  N  E  R  N  K  K  Q  S  K  T  *  S  F  T  S  L  Y  R  *  K  P  I  S  C  N  C  Q  V  D  F  I  S  N  R  K  V  C  D  F  C  *  F  V  D  A  L  L  C  Y  R  N  C  V  P  F  *  T  E  Q  S  E  T  E  I  L  K  V  C  I  S  G  R  N  T  T  L  T  C  I  R  I  S  C  *  C  I  *  D  K  Y  Y  M  L  F  *  C  V  I  *  L  *  A  L  Y  Y  C  S  Y  D  Q  *  T  W  L  *  T  R  *  I  L  I  M  G  T  E  R  A  L  F  *  Q  N  L  F  M  L  H  S  A  T  M  E  I  R  I  C  S  R  V  S  R  D  S  E  L  K  T  *  I  S  F  I  *  L  *  F  L  N  L  K  S  *  L  P  W  K  L  K  T  L  I  C  L  T  H  C  Y  A  I  N  F  N  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33085" stop="33137"/>
                    <exon start="33390" stop="33461"/>
                    <exon start="33575" stop="33620"/>
                    <exon start="35402" stop="35510"/>
                    <exon start="36135" stop="36226"/>
                    <exon start="36332" stop="36394"/>
                    <exon start="36996" stop="37114"/>
                    <exon start="37370" stop="37445"/>
                    <exon start="37529" stop="37585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVFPLSIVVELKQFPVFWLKMEGSVVRRVIPSDNSCLFNAVGYVMDRDRNKAPELRQVIAGTVASDPEKYSDAFLGKSNKEYCDWILNPEKWGGAIELSILADHYGREIAAYDIQTTRCDLYGQGKNYEERVMLIYDGLHYDALAMSPAEGAPEDFDQTIFSVQRDGTVGPAERLALNLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37810" stop="38046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVFAFLVDVFETSTICYSNVSFDFELCITVATISKRGYKLDEFLLWGLKEPFFNRIYSCCTLQQWRLESAAEYQETLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="39923" PGL_stop="37705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39923" e_stop="39726"/>
            <exon e_start="39341" e_stop="39226"/>
            <exon e_start="39144" e_stop="39100"/>
            <exon e_start="39003" e_stop="38930"/>
            <exon e_start="38839" e_stop="38790"/>
            <exon e_start="38221" e_stop="37894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39923" e_stop="39726" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39341" e_stop="39226" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39144" e_stop="39100" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39003" e_stop="38930" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38839" e_stop="38790" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38221" e_stop="37894" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39923" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39915" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39915" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39915" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39914" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39914" stop="39726"/>
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              <exon start="39339" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39327" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228934" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39304" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39295" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228838" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39245" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39117" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38997" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38967" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222121" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38967" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38961" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221517" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38944" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38933" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222150" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224052" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38835" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38835" stop="38790"/>
              <exon start="38221" stop="37918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229021" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38831" stop="38790"/>
              <exon start="38221" stop="37894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221920" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38831" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228733" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38826" stop="38790"/>
              <exon start="38221" stop="37963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229330" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38814" stop="38790"/>
              <exon start="38221" stop="37924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38813" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227278" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38811" stop="38790"/>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38221" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216671" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38190" stop="37916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234862" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG : GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG : ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG : GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT : GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT : ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTTATAACCACGTTTACTGATCGTAGCTACAGT</gDNA_template>
            <first_frame> E  Y  Y  T  I  Q  *  V  N  Y  *  Y  I  *  N  Y  L  K  W  R  S  P  S  H  R  E  A  F  V  C  R  P  W  L  Q  T  P  G  T  T  V  L  R  W  P  S  E  L  D  A  C  Q  L  L  I  R  A  F  L  S  F  A  *  P  V  P  :  V  K  R  R  K  L  V  Q  I  R  H  Q  L  Q  W  A  H  I  L  K  E  L  R  L  I  I  S  F  M  Y  L  V  L  *  V  L  F  L  R :   L  E  N  S  Y  Q  T  M  W  R  I  K  Q  N  R :   L  *  K  I  L  G  R  Y  L  K  L  A  V  L  A  I  L  Q  L  L  K  Q  Q  L   : C  W  L  I  *  G  T  F  R  K  S  M  Q  F  M  L  N  :  I  F  Q  I  L  H  Q  H  V  Q  L  F  K  Q  Q  D  Y  L  *  M  Q  K  L  K  L  I  A  *  Q  C  V  K  Q  I  K  V  F  N  F  H  G  S  Y  D  F  R  F  K  N  *  S  *  I  K  E  I  *  V  F  N  S  E  S  L  D  T  L  L  Q  I  L  I  S  I  V  A  E  C  S  M  N  K  F  C  *  K  R  A  L  S  V  P  I  I  R  I  H  R  V  Y  N  H  V  Y  *  S  *  L  Q  </first_frame>
            <second_frame>  S  T  T  L  F  S  K  *  I  I  S  I  F  K  I  I  *  N  G  V  R  R  R  T  G  K  L  L  Y  A  G  H  G  C  K  R  R  A  Q  P  Y  S  D  G  H  R  N  W  T  R  V  S  C  *  F  A  R  S  F  R  L  L  S  Q  Y  R :   *  K  G  G  N  *  Y  R  *  G  T  S  C  S  G  P  I  F  S  R  N  *  G  *  *  F  H  L  C  I  W  F  S  R  S  Y  S  *   : D  W  R  T  H  I  R  Q  C  G  G  S  N  R  T   : G  S  E  K  Y  W  G  D  T  *  S  W  R  C  *  L  F  C  S  C  *  N  N  N  Y  :  V  G  *  S  R  G  L  S  E  S  Q  C  N  L  C  *  I :   F  S  R  S  C  T  S  T  F  N  F  S  S  S  R  I  T  S  E  C  K  N  *  N  *  L  H  S  S  V  L  N  R  L  K  S  S  T  S  M  A  A  M  T  L  D  S  K  I  K  V  K  *  R  R  F  K  S  L  I  Q  S  L  L  I  L  C  C  R  F  *  S  P  L  L  Q  S  A  A  *  I  N  S  V  K  K  G  L  F  Q  S  P  *  *  E  F  I  E  F  I  T  T  F  T  D  R  S  Y  S </second_frame>
            <third_frame>   V  L  H  Y  S  V  S  E  L  L  V  Y  L  K  L  F  K  M  A  F  A  V  A  P  G  S  F  C  M  P  A  M  A  A  N  A  G  H  N  R  T  P  M  A  I  G  I  G  R  V  S  V  A  N  S  R  V  P  F  V  C  L  A  S  T   : G  K  K  E  E  I  S  T  D  K  A  P  A  A  V  G  P  Y  S  Q  G  I  K  A  N  N  F  I  Y  V  S  G  S  L  G  L  I  P  E  :  T  G  E  L  I  S  D  N  V  E  D  Q  T  E  Q  :  A  L  K  N  I  G  E  I  L  K  A  G  G  V  S  Y  S  A  A  V  K  T  T  I  M :   L  A  D  L  G  D  F  Q  K  V  N  A  I  Y  A  K   : Y  F  P  D  P  A  P  A  R  S  T  F  Q  A  A  G  L  P  L  N  A  K  I  E  I  D  C  I  A  V  C  *  T  D  *  S  L  Q  L  P  W  Q  L  *  L  *  I  Q  K  L  K  L  N  K  G  D  L  S  L  *  F  R  V  S  *  Y  S  A  A  D  S  N  L  H  C  C  R  V  Q  H  E  *  I  L  L  K  K  G  S  F  S  P  H  N  K  N  S  S  S  L  *  P  R  L  L  I  V  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39921" stop="39726"/>
                    <exon start="39341" stop="39226"/>
                    <exon start="39144" stop="39100"/>
                    <exon start="39003" stop="38930"/>
                    <exon start="38839" stop="38790"/>
                    <exon start="38221" stop="38127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLHYSVSELLVYLKLFKMAFAVAPGSFCMPAMAANAGHNRTPMAIGIGRVSVANSRVPFVCLASTGKKEEISTDKAPAAVGPYSQGIKANNFIYVSGSLGLIPETGELISDNVEDQTEQALKNIGEILKAGGVSYSAAVKTTIMLADLGDFQKVNAIYAKYFPDPAPARSTFQAAGLPLNAKIEIDCIAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39923" e_stop="39726"/>
            <exon e_start="39341" e_stop="39226"/>
            <exon e_start="39144" e_stop="39100"/>
            <exon e_start="39003" e_stop="38930"/>
            <exon e_start="38839" e_stop="38790"/>
            <exon e_start="38221" e_stop="37924"/>
            <exon e_start="37723" e_stop="37705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.637" e_score="1.000"/>
          <exon-only e_score="0.526"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39923" e_stop="39726" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39341" e_stop="39226" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39144" e_stop="39100" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39003" e_stop="38930" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38839" e_stop="38790" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38221" e_stop="37924" e_length="298"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="37923" i_stop="37724" i_length="200"/>
          </intron>
          <exon e_serial="7" e_score="0.526">
            <gDNA_exon_boundary e_start="37723" e_stop="37705" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39923" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325390" strand="+"/>
          </PGS_line>
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            <gDNA_exon_coordinates>
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              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39339" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39327" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228934" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39304" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39295" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228838" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39117" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38997" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38944" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37924"/>
              <exon start="37723" stop="37705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38935" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37924"/>
              <exon start="37723" stop="37705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226842" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38826" stop="38790"/>
              <exon start="38221" stop="37963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229330" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38814" stop="38790"/>
              <exon start="38221" stop="37924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG : GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG : ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG : GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT : GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT : ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGGGCTCTTTCAGTCCCCATAATAAGAATTCATCGAGTTT : CACAACAATGCATCAACAA</gDNA_template>
            <first_frame> E  Y  Y  T  I  Q  *  V  N  Y  *  Y  I  *  N  Y  L  K  W  R  S  P  S  H  R  E  A  F  V  C  R  P  W  L  Q  T  P  G  T  T  V  L  R  W  P  S  E  L  D  A  C  Q  L  L  I  R  A  F  L  S  F  A  *  P  V  P  :  V  K  R  R  K  L  V  Q  I  R  H  Q  L  Q  W  A  H  I  L  K  E  L  R  L  I  I  S  F  M  Y  L  V  L  *  V  L  F  L  R :   L  E  N  S  Y  Q  T  M  W  R  I  K  Q  N  R :   L  *  K  I  L  G  R  Y  L  K  L  A  V  L  A  I  L  Q  L  L  K  Q  Q  L   : C  W  L  I  *  G  T  F  R  K  S  M  Q  F  M  L  N  :  I  F  Q  I  L  H  Q  H  V  Q  L  F  K  Q  Q  D  Y  L  *  M  Q  K  L  K  L  I  A  *  Q  C  V  K  Q  I  K  V  F  N  F  H  G  S  Y  D  F  R  F  K  N  *  S  *  I  K  E  I  *  V  F  N  S  E  S  L  D  T  L  L  Q  I  L  I  S  I  V  A  E  C  S  M  N  K  F  C  *  K  R  A  L  S  V  P  I  I  R  I  H  R  V   : S  Q  Q  C  I  N   </first_frame>
            <second_frame>  S  T  T  L  F  S  K  *  I  I  S  I  F  K  I  I  *  N  G  V  R  R  R  T  G  K  L  L  Y  A  G  H  G  C  K  R  R  A  Q  P  Y  S  D  G  H  R  N  W  T  R  V  S  C  *  F  A  R  S  F  R  L  L  S  Q  Y  R :   *  K  G  G  N  *  Y  R  *  G  T  S  C  S  G  P  I  F  S  R  N  *  G  *  *  F  H  L  C  I  W  F  S  R  S  Y  S  *   : D  W  R  T  H  I  R  Q  C  G  G  S  N  R  T   : G  S  E  K  Y  W  G  D  T  *  S  W  R  C  *  L  F  C  S  C  *  N  N  N  Y  :  V  G  *  S  R  G  L  S  E  S  Q  C  N  L  C  *  I :   F  S  R  S  C  T  S  T  F  N  F  S  S  S  R  I  T  S  E  C  K  N  *  N  *  L  H  S  S  V  L  N  R  L  K  S  S  T  S  M  A  A  M  T  L  D  S  K  I  K  V  K  *  R  R  F  K  S  L  I  Q  S  L  L  I  L  C  C  R  F  *  S  P  L  L  Q  S  A  A  *  I  N  S  V  K  K  G  L  F  Q  S  P  *  *  E  F  I  E  F  :  H  N  N  A  S  T  </second_frame>
            <third_frame>   V  L  H  Y  S  V  S  E  L  L  V  Y  L  K  L  F  K  M  A  F  A  V  A  P  G  S  F  C  M  P  A  M  A  A  N  A  G  H  N  R  T  P  M  A  I  G  I  G  R  V  S  V  A  N  S  R  V  P  F  V  C  L  A  S  T   : G  K  K  E  E  I  S  T  D  K  A  P  A  A  V  G  P  Y  S  Q  G  I  K  A  N  N  F  I  Y  V  S  G  S  L  G  L  I  P  E  :  T  G  E  L  I  S  D  N  V  E  D  Q  T  E  Q  :  A  L  K  N  I  G  E  I  L  K  A  G  G  V  S  Y  S  A  A  V  K  T  T  I  M :   L  A  D  L  G  D  F  Q  K  V  N  A  I  Y  A  K   : Y  F  P  D  P  A  P  A  R  S  T  F  Q  A  A  G  L  P  L  N  A  K  I  E  I  D  C  I  A  V  C  *  T  D  *  S  L  Q  L  P  W  Q  L  *  L  *  I  Q  K  L  K  L  N  K  G  D  L  S  L  *  F  R  V  S  *  Y  S  A  A  D  S  N  L  H  C  C  R  V  Q  H  E  *  I  L  L  K  K  G  S  F  S  P  H  N  K  N  S  S  S  F :   T  T  M  H  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39921" stop="39726"/>
                    <exon start="39341" stop="39226"/>
                    <exon start="39144" stop="39100"/>
                    <exon start="39003" stop="38930"/>
                    <exon start="38839" stop="38790"/>
                    <exon start="38221" stop="38127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLHYSVSELLVYLKLFKMAFAVAPGSFCMPAMAANAGHNRTPMAIGIGRVSVANSRVPFVCLASTGKKEEISTDKAPAAVGPYSQGIKANNFIYVSGSLGLIPETGELISDNVEDQTEQALKNIGEILKAGGVSYSAAVKTTIMLADLGDFQKVNAIYAKYFPDPAPARSTFQAAGLPLNAKIEIDCIAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39923" e_stop="39726"/>
            <exon e_start="39341" e_stop="39226"/>
            <exon e_start="39144" e_stop="39100"/>
            <exon e_start="39003" e_stop="38930"/>
            <exon e_start="38839" e_stop="38790"/>
            <exon e_start="38221" e_stop="37961"/>
            <exon e_start="37723" e_stop="37715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.637" e_score="0.996"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39923" e_stop="39726" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39725" i_stop="39342" i_length="384"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39341" e_stop="39226" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39225" i_stop="39145" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39144" e_stop="39100" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39099" i_stop="39004" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39003" e_stop="38930" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38929" i_stop="38840" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38839" e_stop="38790" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38789" i_stop="38222" i_length="568"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="38221" e_stop="37961" e_length="261"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.637">
            <gDNA_intron_boundary i_start="37960" i_stop="37724" i_length="237"/>
          </intron>
          <exon e_serial="7" e_score="0.625">
            <gDNA_exon_boundary e_start="37723" e_stop="37715" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39923" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39919" stop="39726"/>
              <exon start="39341" stop="39306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37961"/>
              <exon start="37723" stop="37716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37963"/>
              <exon start="37723" stop="37716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39917" stop="39726"/>
              <exon start="39341" stop="39306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39915" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="38149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39915" stop="39726"/>
              <exon start="39341" stop="39226"/>
              <exon start="39144" stop="39100"/>
              <exon start="39003" stop="38930"/>
              <exon start="38839" stop="38795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240788" strand="+"/>
          </PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38966" stop="38930"/>
              <exon start="38839" stop="38790"/>
              <exon start="38221" stop="37961"/>
              <exon start="37723" stop="37715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229704" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38826" stop="38790"/>
              <exon start="38221" stop="37963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGCCATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAGCCAGTACCG : GTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTATGTATCTGGTTCTCTAGGTCTTATTCCTGAG : ACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAG : GCTCTGAAAAATATTGGGGAGATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTAT : GTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTTATGCTAAAT : ATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCAGTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATTCAGAGTCTCTTGATACTCTGCTGCAGATTCTAATCTCCATTGTTGCAGAGTGCAGCATGAATAAATTCTGTTAAAAAAGG : CACAACAAT</gDNA_template>
            <first_frame> E  Y  Y  T  I  Q  *  V  N  Y  *  Y  I  *  N  Y  L  K  W  R  S  P  S  H  R  E  A  F  V  C  R  P  W  L  Q  T  P  G  T  T  V  L  R  W  P  S  E  L  D  A  C  Q  L  L  I  R  A  F  L  S  F  A  *  P  V  P  :  V  K  R  R  K  L  V  Q  I  R  H  Q  L  Q  W  A  H  I  L  K  E  L  R  L  I  I  S  F  M  Y  L  V  L  *  V  L  F  L  R :   L  E  N  S  Y  Q  T  M  W  R  I  K  Q  N  R :   L  *  K  I  L  G  R  Y  L  K  L  A  V  L  A  I  L  Q  L  L  K  Q  Q  L   : C  W  L  I  *  G  T  F  R  K  S  M  Q  F  M  L  N  :  I  F  Q  I  L  H  Q  H  V  Q  L  F  K  Q  Q  D  Y  L  *  M  Q  K  L  K  L  I  A  *  Q  C  V  K  Q  I  K  V  F  N  F  H  G  S  Y  D  F  R  F  K  N  *  S  *  I  K  E  I  *  V  F  N  S  E  S  L  D  T  L  L  Q  I  L  I  S  I  V  A  E  C  S  M  N  K  F  C  *  K  R  :  H  N  N </first_frame>
            <second_frame>  S  T  T  L  F  S  K  *  I  I  S  I  F  K  I  I  *  N  G  V  R  R  R  T  G  K  L  L  Y  A  G  H  G  C  K  R  R  A  Q  P  Y  S  D  G  H  R  N  W  T  R  V  S  C  *  F  A  R  S  F  R  L  L  S  Q  Y  R :   *  K  G  G  N  *  Y  R  *  G  T  S  C  S  G  P  I  F  S  R  N  *  G  *  *  F  H  L  C  I  W  F  S  R  S  Y  S  *   : D  W  R  T  H  I  R  Q  C  G  G  S  N  R  T   : G  S  E  K  Y  W  G  D  T  *  S  W  R  C  *  L  F  C  S  C  *  N  N  N  Y  :  V  G  *  S  R  G  L  S  E  S  Q  C  N  L  C  *  I :   F  S  R  S  C  T  S  T  F  N  F  S  S  S  R  I  T  S  E  C  K  N  *  N  *  L  H  S  S  V  L  N  R  L  K  S  S  T  S  M  A  A  M  T  L  D  S  K  I  K  V  K  *  R  R  F  K  S  L  I  Q  S  L  L  I  L  C  C  R  F  *  S  P  L  L  Q  S  A  A  *  I  N  S  V  K  K  G :   T  T   </second_frame>
            <third_frame>   V  L  H  Y  S  V  S  E  L  L  V  Y  L  K  L  F  K  M  A  F  A  V  A  P  G  S  F  C  M  P  A  M  A  A  N  A  G  H  N  R  T  P  M  A  I  G  I  G  R  V  S  V  A  N  S  R  V  P  F  V  C  L  A  S  T   : G  K  K  E  E  I  S  T  D  K  A  P  A  A  V  G  P  Y  S  Q  G  I  K  A  N  N  F  I  Y  V  S  G  S  L  G  L  I  P  E  :  T  G  E  L  I  S  D  N  V  E  D  Q  T  E  Q  :  A  L  K  N  I  G  E  I  L  K  A  G  G  V  S  Y  S  A  A  V  K  T  T  I  M :   L  A  D  L  G  D  F  Q  K  V  N  A  I  Y  A  K   : Y  F  P  D  P  A  P  A  R  S  T  F  Q  A  A  G  L  P  L  N  A  K  I  E  I  D  C  I  A  V  C  *  T  D  *  S  L  Q  L  P  W  Q  L  *  L  *  I  Q  K  L  K  L  N  K  G  D  L  S  L  *  F  R  V  S  *  Y  S  A  A  D  S  N  L  H  C  C  R  V  Q  H  E  *  I  L  L  K  K   : A  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39921" stop="39726"/>
                    <exon start="39341" stop="39226"/>
                    <exon start="39144" stop="39100"/>
                    <exon start="39003" stop="38930"/>
                    <exon start="38839" stop="38790"/>
                    <exon start="38221" stop="38127"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLHYSVSELLVYLKLFKMAFAVAPGSFCMPAMAANAGHNRTPMAIGIGRVSVANSRVPFVCLASTGKKEEISTDKAPAAVGPYSQGIKANNFIYVSGSLGLIPETGELISDNVEDQTEQALKNIGEILKAGGVSYSAAVKTTIMLADLGDFQKVNAIYAKYFPDPAPARSTFQAAGLPLNAKIEIDCIAVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47975" PGL_stop="44140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47049" e_stop="46801"/>
            <exon e_start="45912" e_stop="45820"/>
            <exon e_start="45550" e_stop="45350"/>
            <exon e_start="44452" e_stop="44140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="47049" e_stop="46801" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45912" e_stop="45820" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45550" e_stop="45350" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.917" acc_prob="0.863">
            <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="44452" e_stop="44140" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47049" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45350"/>
              <exon start="44452" stop="44235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47016" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45350"/>
              <exon start="44452" stop="44140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46914" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG : GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG : AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG : ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCT</gDNA_template>
            <first_frame> Q  G  E  D  V  I  A  I  L  P  W  E  E  W  W  E  F  E  V  K  K  D  D  S  N  P  H  I  A  L  L  P  L  H  P  D  L  R  A  K  F  N  E  T  A  A  W  E  Y  A  K  S  M  A  G  M  P  Y  G  Y  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  S  P  L  D  A  N  L  :  V  A  S  V  M  T  V  W  N  H  L  Q  P  A  Y  A  A  N  M  W  N  E  A  L  N  K  R  L  G  T  K  :  N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  F  S  F  A  K  L  L  A  I  P  E  K  D  D  W  V  Y  S  D  G  K  S  T  S  C  V  A  F  I  L  E  M  Y  K  E  A  G  L  F  G  E  F  A  S  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  S  L  K  F  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D  D  N  V  S  L  P  F  C  Q  I  R  G  E  Y  R  M  E  L  P  E  Y  N  S  I  D  P  Y  P  H  M  N  E  R  C  P  S  M  P  P  K  Y  F  R  P  Q  S  C  *  Q  R  L  S  Y  H  P  R  N  L  R  G  *  K  H  I  V  F  H  S  S  V  L  R  L  Y  T  C  S  T  I  S  </first_frame>
            <second_frame>  R  E  K  M  L  L  L  Y  C  L  G  K  N  G  G  S  L  R  *  K  K  M  I  P  I  H  I  L  R  C  C  L  C  T  L  T  S  V  P  S  L  M  K  L  L  L  G  N  M  Q  K  A  W  Q  A  C  L  M  V  T  T  T  *  Y  L  A  G  *  T  Q  L  M  E  I  T  P  H  P  W  M  L  I  W :   L  L  L  S  *  L  F  G  T  T  F  S  L  H  M  L  R  T  C  G  M  K  P  *  T  S  D  S  E  L  R :   T  L  V  F  L  I  F  L  W  K  L  K  S  V  D  S  L  L  P  N  C  W  L  F  Q  R  R  M  I  G  F  I  V  M  E  S  R  H  H  V  L  L  L  F  L  R  C  T  R  K  Q  G  Y  L  V  N  L  Q  A  Q  F  R  L  Q  N  S  R :   L  K  M  L  T  L  S  S  F  S  R  T  I  Q  A  G  C  Q  S  G  A  M  Q  M  I  M  *  A  F  L  S  V  K  F  E  E  S  T  G  W  N  Y  L  N  T  I  V  *  I  R  T  P  I  *  M  K  D  A  H  L  C  L  R  N  I  S  D  H  K  V  V  D  N  G  F  P  I  I  L  V  I  S  E  V  R  S  I  *  F  F  T  H  Q  F  S  G  C  I  L  V  V  Q  Y  P </second_frame>
            <third_frame>   G  R  R  C  Y  C  Y  I  A  L  G  R  M  V  G  V  *  G  E  K  R  *  F  Q  S  T  Y  C  V  A  A  F  A  P  *  P  P  C  Q  V  *  *  N  C  C  L  G  I  C  K  K  H  G  R  H  A  L  W  L  P  Q  L  N  I  *  L  D  R  H  N  *  W  K  L  P  L  T  L  G  C  *  S   : G  C  F  C  H  D  C  L  E  P  P  S  A  C  I  C  C  E  H  V  E  *  S  L  E  Q  A  T  R  N  *   : E  P  *  S  S  *  Y  S  C  G  S  *  K  A  W  I  L  F  C  Q  I  V  G  Y  S  R  E  G  *  L  G  L  *  *  W  K  V  D  I  M  C  C  F  Y  S  *  D  V  Q  G  S  R  A  I  W  *  I  C  K  L  N  S  G  Y  R  I  H   : D  *  R  C  L  L  S  Q  V  F  R  E  Q  F  K  P  V  A  K  V  V  Q  C  R  *  *  C  E  P  S  F  L  S  N  S  R  R  V  P  D  G  T  T  *  I  Q  *  Y  R  S  V  P  P  Y  E  *  K  M  P  I  Y  A  S  E  I  F  Q  T  T  K  L  L  T  T  A  F  L  S  S  S  *  S  Q  R  L  E  A  Y  S  F  S  L  I  S  S  Q  V  V  Y  L  *  Y  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47049" stop="46801"/>
                    <exon start="45912" stop="45820"/>
                    <exon start="45550" stop="45350"/>
                    <exon start="44452" stop="44237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGEDVIAILPWEEWWEFEVKKDDSNPHIALLPLHPDLRAKFNETAAWEYAKSMAGMPYGYHNLIFSWIDTIDGNYPSPLDANLVASVMTVWNHLQPAYAANMWNEALNKRLGTKNLSLPDILVEVEKRGFSFAKLLAIPEKDDWVYSDGKSTSCVAFILEMYKEAGLFGEFASSIQVTEFTIKDAYSLKFFENNSSRLPKWCNADDNVSLPFCQIRGEYRMELPEYNSIDPYPHMNERCPSMPPKYFRPQSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47975" e_stop="47936"/>
            <exon e_start="47046" e_stop="46801"/>
            <exon e_start="45912" e_stop="45820"/>
            <exon e_start="45550" e_stop="45350"/>
            <exon e_start="44452" e_stop="44140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47975" e_stop="47936" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="47935" i_stop="47047" i_length="889"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47046" e_stop="46801" e_length="246"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46800" i_stop="45913" i_length="888"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45912" e_stop="45820" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="45819" i_stop="45551" i_length="269"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45550" e_stop="45350" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.863">
            <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="44452" e_stop="44140" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47975" stop="47936"/>
              <exon start="47046" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47016" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45350"/>
              <exon start="44452" stop="44140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46914" stop="46801"/>
              <exon start="45912" stop="45820"/>
              <exon start="45550" stop="45416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTATGGGTTGGCGAATCTGGAAATGAGAATGATAAG : GGAGAAGATGTTATTGCTATATTGCCTTGGGAAGAATGGTGGGAGTTTGAGGTGAAAAAAGATGATTCCAATCCACATATTGCGTTGCTGCCTTTGCACCCTGACCTCCGTGCCAAGTTTAATGAAACTGCTGCTTGGGAATATGCAAAAAGCATGGCAGGCATGCCTTATGGTTACCACAACTTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCCTCACCCTTGGATGCTAATCTG : GTTGCTTCTGTCATGACTGTTTGGAACCACCTTCAGCCTGCATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGCGACTCGGAACTAAG : AACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG : ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATACTTGTAGTACAATATCCT</gDNA_template>
            <first_frame> K  T  M  G  W  R  I  W  K  *  E  *  *   : G  R  R  C  Y  C  Y  I  A  L  G  R  M  V  G  V  *  G  E  K  R  *  F  Q  S  T  Y  C  V  A  A  F  A  P  *  P  P  C  Q  V  *  *  N  C  C  L  G  I  C  K  K  H  G  R  H  A  L  W  L  P  Q  L  N  I  *  L  D  R  H  N  *  W  K  L  P  L  T  L  G  C  *  S   : G  C  F  C  H  D  C  L  E  P  P  S  A  C  I  C  C  E  H  V  E  *  S  L  E  Q  A  T  R  N  *   : E  P  *  S  S  *  Y  S  C  G  S  *  K  A  W  I  L  F  C  Q  I  V  G  Y  S  R  E  G  *  L  G  L  *  *  W  K  V  D  I  M  C  C  F  Y  S  *  D  V  Q  G  S  R  A  I  W  *  I  C  K  L  N  S  G  Y  R  I  H   : D  *  R  C  L  L  S  Q  V  F  R  E  Q  F  K  P  V  A  K  V  V  Q  C  R  *  *  C  E  P  S  F  L  S  N  S  R  R  V  P  D  G  T  T  *  I  Q  *  Y  R  S  V  P  P  Y  E  *  K  M  P  I  Y  A  S  E  I  F  Q  T  T  K  L  L  T  T  A  F  L  S  S  S  *  S  Q  R  L  E  A  Y  S  F  S  L  I  S  S  Q  V  V  Y  L  *  Y  N  I   </first_frame>
            <second_frame>  K  L  W  V  G  E  S  G  N  E  N  D  K  :  G  E  D  V  I  A  I  L  P  W  E  E  W  W  E  F  E  V  K  K  D  D  S  N  P  H  I  A  L  L  P  L  H  P  D  L  R  A  K  F  N  E  T  A  A  W  E  Y  A  K  S  M  A  G  M  P  Y  G  Y  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  S  P  L  D  A  N  L  :  V  A  S  V  M  T  V  W  N  H  L  Q  P  A  Y  A  A  N  M  W  N  E  A  L  N  K  R  L  G  T  K  :  N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  F  S  F  A  K  L  L  A  I  P  E  K  D  D  W  V  Y  S  D  G  K  S  T  S  C  V  A  F  I  L  E  M  Y  K  E  A  G  L  F  G  E  F  A  S  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  S  L  K  F  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D  D  N  V  S  L  P  F  C  Q  I  R  G  E  Y  R  M  E  L  P  E  Y  N  S  I  D  P  Y  P  H  M  N  E  R  C  P  S  M  P  P  K  Y  F  R  P  Q  S  C  *  Q  R  L  S  Y  H  P  R  N  L  R  G  *  K  H  I  V  F  H  S  S  V  L  R  L  Y  T  C  S  T  I  S  </second_frame>
            <third_frame>   N  Y  G  L  A  N  L  E  M  R  M  I  R :   E  K  M  L  L  L  Y  C  L  G  K  N  G  G  S  L  R  *  K  K  M  I  P  I  H  I  L  R  C  C  L  C  T  L  T  S  V  P  S  L  M  K  L  L  L  G  N  M  Q  K  A  W  Q  A  C  L  M  V  T  T  T  *  Y  L  A  G  *  T  Q  L  M  E  I  T  P  H  P  W  M  L  I  W :   L  L  L  S  *  L  F  G  T  T  F  S  L  H  M  L  R  T  C  G  M  K  P  *  T  S  D  S  E  L  R :   T  L  V  F  L  I  F  L  W  K  L  K  S  V  D  S  L  L  P  N  C  W  L  F  Q  R  R  M  I  G  F  I  V  M  E  S  R  H  H  V  L  L  L  F  L  R  C  T  R  K  Q  G  Y  L  V  N  L  Q  A  Q  F  R  L  Q  N  S  R :   L  K  M  L  T  L  S  S  F  S  R  T  I  Q  A  G  C  Q  S  G  A  M  Q  M  I  M  *  A  F  L  S  V  K  F  E  E  S  T  G  W  N  Y  L  N  T  I  V  *  I  R  T  P  I  *  M  K  D  A  H  L  C  L  R  N  I  S  D  H  K  V  V  D  N  G  F  P  I  I  L  V  I  S  E  V  R  S  I  *  F  F  T  H  Q  F  S  G  C  I  L  V  V  Q  Y  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47974" stop="47936"/>
                    <exon start="47046" stop="46801"/>
                    <exon start="45912" stop="45820"/>
                    <exon start="45550" stop="45350"/>
                    <exon start="44452" stop="44237"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLWVGESGNENDKGEDVIAILPWEEWWEFEVKKDDSNPHIALLPLHPDLRAKFNETAAWEYAKSMAGMPYGYHNLIFSWIDTIDGNYPSPLDANLVASVMTVWNHLQPAYAANMWNEALNKRLGTKNLSLPDILVEVEKRGFSFAKLLAIPEKDDWVYSDGKSTSCVAFILEMYKEAGLFGEFASSIQVTEFTIKDAYSLKFFENNSSRLPKWCNADDNVSLPFCQIRGEYRMELPEYNSIDPYPHMNERCPSMPPKYFRPQSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45552" e_stop="45350"/>
            <exon e_start="44452" e_stop="44157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.863" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45552" e_stop="45350" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.863">
            <gDNA_intron_boundary i_start="45349" i_stop="44453" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="44452" e_stop="44157" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45552" stop="45350"/>
              <exon start="44452" stop="44157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACCTTAGTCTTCCTGATATTCTTGTGGAAGTTGAAAAGCGTGGATTCTCTTTTGCCAAATTGTTGGCTATTCCAGAGAAGGATGATTGGGTTTATAGTGATGGAAAGTCGACATCATGTGTTGCTTTTATTCTTGAGATGTACAAGGAAGCAGGGCTATTTGGTGAATTTGCAAGCTCAATTCAGGTTACAGAATTCACG : ATTAAAGATGCTTACTCTCTCAAGTTTTTCGAGAACAATTCAAGCCGGTTGCCAAAGTGGTGCAATGCAGATGATAATGTGAGCCTTCCTTTCTGTCAAATTCGAGGAGAGTACCGGATGGAACTACCTGAATACAATAGTATAGATCCGTACCCCCATATGAATGAAAGATGCCCATCTATGCCTCCGAAATATTTCAGACCACAAAGTTGTTGACAACGGCTTTCCTATCATCCTCGTAATCTCAGAGGTTAGAAGCATATAGTTTTTCACTCATCAGTTCTCAGGTTGTATAC</gDNA_template>
            <first_frame> R  T  L  V  F  L  I  F  L  W  K  L  K  S  V  D  S  L  L  P  N  C  W  L  F  Q  R  R  M  I  G  F  I  V  M  E  S  R  H  H  V  L  L  L  F  L  R  C  T  R  K  Q  G  Y  L  V  N  L  Q  A  Q  F  R  L  Q  N  S  R :   L  K  M  L  T  L  S  S  F  S  R  T  I  Q  A  G  C  Q  S  G  A  M  Q  M  I  M  *  A  F  L  S  V  K  F  E  E  S  T  G  W  N  Y  L  N  T  I  V  *  I  R  T  P  I  *  M  K  D  A  H  L  C  L  R  N  I  S  D  H  K  V  V  D  N  G  F  P  I  I  L  V  I  S  E  V  R  S  I  *  F  F  T  H  Q  F  S  G  C  I  </first_frame>
            <second_frame>  E  P  *  S  S  *  Y  S  C  G  S  *  K  A  W  I  L  F  C  Q  I  V  G  Y  S  R  E  G  *  L  G  L  *  *  W  K  V  D  I  M  C  C  F  Y  S  *  D  V  Q  G  S  R  A  I  W  *  I  C  K  L  N  S  G  Y  R  I  H   : D  *  R  C  L  L  S  Q  V  F  R  E  Q  F  K  P  V  A  K  V  V  Q  C  R  *  *  C  E  P  S  F  L  S  N  S  R  R  V  P  D  G  T  T  *  I  Q  *  Y  R  S  V  P  P  Y  E  *  K  M  P  I  Y  A  S  E  I  F  Q  T  T  K  L  L  T  T  A  F  L  S  S  S  *  S  Q  R  L  E  A  Y  S  F  S  L  I  S  S  Q  V  V  Y </second_frame>
            <third_frame>   N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  F  S  F  A  K  L  L  A  I  P  E  K  D  D  W  V  Y  S  D  G  K  S  T  S  C  V  A  F  I  L  E  M  Y  K  E  A  G  L  F  G  E  F  A  S  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  S  L  K  F  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D  D  N  V  S  L  P  F  C  Q  I  R  G  E  Y  R  M  E  L  P  E  Y  N  S  I  D  P  Y  P  H  M  N  E  R  C  P  S  M  P  P  K  Y  F  R  P  Q  S  C  *  Q  R  L  S  Y  H  P  R  N  L  R  G  *  K  H  I  V  F  H  S  S  V  L  R  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45550" stop="45350"/>
                    <exon start="44452" stop="44237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSLPDILVEVEKRGFSFAKLLAIPEKDDWVYSDGKSTSCVAFILEMYKEAGLFGEFASSIQVTEFTIKDAYSLKFFENNSSRLPKWCNADDNVSLPFCQIRGEYRMELPEYNSIDPYPHMNERCPSMPPKYFRPQSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="58661" PGL_stop="56899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58661" e_stop="58522"/>
            <exon e_start="57681" e_stop="57589"/>
            <exon e_start="57392" e_stop="57192"/>
            <exon e_start="56977" e_stop="56899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.861" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58661" e_stop="58522" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58521" i_stop="57682" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57681" e_stop="57589" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.945">
            <gDNA_intron_boundary i_start="57588" i_stop="57393" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="57392" e_stop="57192" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.872" acc_prob="0.861">
            <gDNA_intron_boundary i_start="57191" i_stop="56978" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56977" e_stop="56899" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58661" stop="58522"/>
              <exon start="57681" stop="57589"/>
              <exon start="57392" stop="57192"/>
              <exon start="56977" stop="56899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58661" stop="58522"/>
              <exon start="57681" stop="57589"/>
              <exon start="57392" stop="57192"/>
              <exon start="56977" stop="56942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGAGCCAAGTTTAACGAGACTGCTGCTTGGGAATATGCACGAAGCATGGAAGGAAAATCTTATGGTTACCACAACCTAATATTTAGCTGGATAGACACAATTGATGGAAATTACCCACCACCCGTGGATGCTCATCTG : GTGGCTTCTGTCATGACTGTTTGGAACCAAATAGCGCCTGAATATGGTTCTAACTTGTGGAACGAAGCCTTAAACAAACGACTTGGAACTCAG : AACCTTAGTCTTCCTGATATACTTGTTGAAGTTGAAAAGCGTGGATCCTCTTTCGCCAAATTGTTGGCTATTCCAGAGCAAGATGACTGGGTTTATAGCGACGGCAAGTCAGCATCATGTGTTGCTTTTATTCTTGAAATGTACAAGGAAGGAGGACTATTTGGTGAACTTGCAAACTCGATTCAGGTTACAGAGTTCACG : ATAAAAGACGCTTATACTCTCAACCTTTTCGAAAACAATTCAAGCCGGTTGCCTAAATGGTGCAATGCCGATGACACTA</gDNA_template>
            <first_frame> S  E  P  S  L  T  R  L  L  L  G  N  M  H  E  A  W  K  E  N  L  M  V  T  T  T  *  Y  L  A  G  *  T  Q  L  M  E  I  T  H  H  P  W  M  L  I  W :   W  L  L  S  *  L  F  G  T  K  *  R  L  N  M  V  L  T  C  G  T  K  P  *  T  N  D  L  E  L  R :   T  L  V  F  L  I  Y  L  L  K  L  K  S  V  D  P  L  S  P  N  C  W  L  F  Q  S  K  M  T  G  F  I  A  T  A  S  Q  H  H  V  L  L  L  F  L  K  C  T  R  K  E  D  Y  L  V  N  L  Q  T  R  F  R  L  Q  S  S  R :   *  K  T  L  I  L  S  T  F  S  K  T  I  Q  A  G  C  L  N  G  A  M  P  M  T  L </first_frame>
            <second_frame>  P  S  Q  V  *  R  D  C  C  L  G  I  C  T  K  H  G  R  K  I  L  W  L  P  Q  P  N  I  *  L  D  R  H  N  *  W  K  L  P  T  T  R  G  C  S  S   : G  G  F  C  H  D  C  L  E  P  N  S  A  *  I  W  F  *  L  V  E  R  S  L  K  Q  T  T  W  N  S   : E  P  *  S  S  *  Y  T  C  *  S  *  K  A  W  I  L  F  R  Q  I  V  G  Y  S  R  A  R  *  L  G  L  *  R  R  Q  V  S  I  M  C  C  F  Y  S  *  N  V  Q  G  R  R  T  I  W  *  T  C  K  L  D  S  G  Y  R  V  H   : D  K  R  R  L  Y  S  Q  P  F  R  K  Q  F  K  P  V  A  *  M  V  Q  C  R  *  H   </second_frame>
            <third_frame>   R  A  K  F  N  E  T  A  A  W  E  Y  A  R  S  M  E  G  K  S  Y  G  Y  H  N  L  I  F  S  W  I  D  T  I  D  G  N  Y  P  P  P  V  D  A  H  L  :  V  A  S  V  M  T  V  W  N  Q  I  A  P  E  Y  G  S  N  L  W  N  E  A  L  N  K  R  L  G  T  Q  :  N  L  S  L  P  D  I  L  V  E  V  E  K  R  G  S  S  F  A  K  L  L  A  I  P  E  Q  D  D  W  V  Y  S  D  G  K  S  A  S  C  V  A  F  I  L  E  M  Y  K  E  G  G  L  F  G  E  L  A  N  S  I  Q  V  T  E  F  T  :  I  K  D  A  Y  T  L  N  L  F  E  N  N  S  S  R  L  P  K  W  C  N  A  D  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58659" stop="58522"/>
                    <exon start="57681" stop="57589"/>
                    <exon start="57392" stop="57192"/>
                    <exon start="56977" stop="56900"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAKFNETAAWEYARSMEGKSYGYHNLIFSWIDTIDGNYPPPVDAHLVASVMTVWNQIAPEYGSNLWNEALNKRLGTQNLSLPDILVEVEKRGSSFAKLLAIPEQDDWVYSDGKSASCVAFILEMYKEGGLFGELANSIQVTEFTIKDAYTLNLFENNSSRLPKWCNADDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="61148" PGL_stop="58737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61148" e_stop="60911"/>
            <exon e_start="59627" e_stop="59487"/>
            <exon e_start="59394" e_stop="59029"/>
            <exon e_start="58767" e_stop="58737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.352" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="0.986"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61148" e_stop="60911" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60910" i_stop="59628" i_length="1283"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59627" e_stop="59487" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.352" acc_prob="0.987">
            <gDNA_intron_boundary i_start="59486" i_stop="59395" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="59394" e_stop="59029" e_length="366"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="59028" i_stop="58768" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58767" e_stop="58737" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61148" stop="60911"/>
              <exon start="59627" stop="59487"/>
              <exon start="59394" stop="59029"/>
              <exon start="58767" stop="58737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213749" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCACTGTTTCATCCAAAAGATATTCTGCCGCTGTTACCAAGACAGGTATCTTGGCCTATTATCAATTCTCTTCACAGTGCCGTGGACCTATTGCCTGCTTTTATGGGTGCTGCTTCAGTTGAAGGGAATAATACATTGGAGTGGAAAGGTGCTTGCTTTTACAAGAATATTGCTTGGTTACAGCTTCACAACAAATCTAAAAGTCAATTTGGTGGTGGTACCCTTCATATCAAG : GTGAGCAATGCACACAGTTGGACATGTTTGGACCTTTACATCTTTGCAACCCCATATCGTGTAACGTGGGATTACTACTTTTTTTCTCGTGAACATACCCTTGAAATCAAAGAGTGGAAGTCTCAAGCTGAGTTAGAATAT : GTAAAAAATAGAGGGGTGTCCATTTTCCTATTGCAAGCAGGAACGTTAGGAACCCTTTCAGCAATATGGAATGCTTTCCCCTTGTTCGTCAATAATGGATGGGGCGAGAAGTCAAATATTGATTTTCTAGAGAAACATATGGGTGCTTCATTTGAAGAACGTCCACAGCCGTGGGTCACAAACCTTACTACTGATGACATTCATTCTGGAGATTTTCTTGCTATTTCAAAAATTAGAGGTACCTGGGGCGCTTTTGAGACTTTAGAGAAATGGGCAACGGGCTCTTATGCTGGCCATACTGCTGTTTGCTTGAGAGATGCTGAAGGAAAACTATGGGTTGGCGAATCTGGAAATGATAATGACAAG : GGAGAAGATGTGATTGCTATATTACCATGGG</gDNA_template>
            <first_frame> *  I  T  V  S  S  K  R  Y  S  A  A  V  T  K  T  G  I  L  A  Y  Y  Q  F  S  S  Q  C  R  G  P  I  A  C  F  Y  G  C  C  F  S  *  R  E  *  Y  I  G  V  E  R  C  L  L  L  Q  E  Y  C  L  V  T  A  S  Q  Q  I  *  K  S  I  W  W  W  Y  P  S  Y  Q   : G  E  Q  C  T  Q  L  D  M  F  G  P  L  H  L  C  N  P  I  S  C  N  V  G  L  L  L  F  F  S  *  T  Y  P  *  N  Q  R  V  E  V  S  S  *  V  R  I   : C  K  K  *  R  G  V  H  F  P  I  A  S  R  N  V  R  N  P  F  S  N  M  E  C  F  P  L  V  R  Q  *  W  M  G  R  E  V  K  Y  *  F  S  R  E  T  Y  G  C  F  I  *  R  T  S  T  A  V  G  H  K  P  Y  Y  *  *  H  S  F  W  R  F  S  C  Y  F  K  N  *  R  Y  L  G  R  F  *  D  F  R  E  M  G  N  G  L  L  C  W  P  Y  C  C  L  L  E  R  C  *  R  K  T  M  G  W  R  I  W  K  *  *  *  Q   : G  R  R  C  D  C  Y  I  T  M   </first_frame>
            <second_frame>  E  S  L  F  H  P  K  D  I  L  P  L  L  P  R  Q  V  S  W  P  I  I  N  S  L  H  S  A  V  D  L  L  P  A  F  M  G  A  A  S  V  E  G  N  N  T  L  E  W  K  G  A  C  F  Y  K  N  I  A  W  L  Q  L  H  N  K  S  K  S  Q  F  G  G  G  T  L  H  I  K  :  V  S  N  A  H  S  W  T  C  L  D  L  Y  I  F  A  T  P  Y  R  V  T  W  D  Y  Y  F  F  S  R  E  H  T  L  E  I  K  E  W  K  S  Q  A  E  L  E  Y  :  V  K  N  R  G  V  S  I  F  L  L  Q  A  G  T  L  G  T  L  S  A  I  W  N  A  F  P  L  F  V  N  N  G  W  G  E  K  S  N  I  D  F  L  E  K  H  M  G  A  S  F  E  E  R  P  Q  P  W  V  T  N  L  T  T  D  D  I  H  S  G  D  F  L  A  I  S  K  I  R  G  T  W  G  A  F  E  T  L  E  K  W  A  T  G  S  Y  A  G  H  T  A  V  C  L  R  D  A  E  G  K  L  W  V  G  E  S  G  N  D  N  D  K  :  G  E  D  V  I  A  I  L  P  W  </second_frame>
            <third_frame>   N  H  C  F  I  Q  K  I  F  C  R  C  Y  Q  D  R  Y  L  G  L  L  S  I  L  F  T  V  P  W  T  Y  C  L  L  L  W  V  L  L  Q  L  K  G  I  I  H  W  S  G  K  V  L  A  F  T  R  I  L  L  G  Y  S  F  T  T  N  L  K  V  N  L  V  V  V  P  F  I  S  R :   *  A  M  H  T  V  G  H  V  W  T  F  T  S  L  Q  P  H  I  V  *  R  G  I  T  T  F  F  L  V  N  I  P  L  K  S  K  S  G  S  L  K  L  S  *  N  M :   *  K  I  E  G  C  P  F  S  Y  C  K  Q  E  R  *  E  P  F  Q  Q  Y  G  M  L  S  P  C  S  S  I  M  D  G  A  R  S  Q  I  L  I  F  *  R  N  I  W  V  L  H  L  K  N  V  H  S  R  G  S  Q  T  L  L  L  M  T  F  I  L  E  I  F  L  L  F  Q  K  L  E  V  P  G  A  L  L  R  L  *  R  N  G  Q  R  A  L  M  L  A  I  L  L  F  A  *  E  M  L  K  E  N  Y  G  L  A  N  L  E  M  I  M  T  R :   E  K  M  *  L  L  Y  Y  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61147" stop="60911"/>
                    <exon start="59627" stop="59487"/>
                    <exon start="59394" stop="59029"/>
                    <exon start="58767" stop="58738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESLFHPKDILPLLPRQVSWPIINSLHSAVDLLPAFMGAASVEGNNTLEWKGACFYKNIAWLQLHNKSKSQFGGGTLHIKVSNAHSWTCLDLYIFATPYRVTWDYYFFSREHTLEIKEWKSQAELEYVKNRGVSIFLLQAGTLGTLSAIWNAFPLFVNNGWGEKSNIDFLEKHMGASFEERPQPWVTNLTTDDIHSGDFLAISKIRGTWGAFETLEKWATGSYAGHTAVCLRDAEGKLWVGESGNDNDKGEDVIAILPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="63543" PGL_stop="64757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63543" e_stop="64757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="63543" e_stop="64757" e_length="1215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63543" stop="64268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63546" stop="64404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63547" stop="64459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63562" stop="64332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63563" stop="64074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63578" stop="64462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63584" stop="64475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64049" stop="64757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539801" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64060" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64061" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64071" stop="64635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTATTTTTCTTGGCATTTTGATTGCAAATCCAACCTAAAAGTTCCTTCAATATGTCTTCCATTCTACCTCAAAACCATGCCATTAGATCCTCACAACGAGCCCTCGATAAAATTGGAACGATACAGAAAAGATCCAGTACAAATCGAGCTAAGAGCACCTTCCGCCATGTTCTCCTACCTTCACGAGTCTATTGTATCTCTTCCTCCACCTCCTCTTCCTCGTCCAACATTGCCACAATCACCACCAAACCACCACCCGTCTCAGAACCACTAACTTACGACCCACTCACTCCCATCACAAAAAACAAGATGAGTAATACGAAAAGTGTATTAAATGACCCGAGTTTAAAATCCACTTGGGCTCATCGAGCCTGGATGGCAAGTGGGTGCACCACCGTGCTAATTCCTTTAGCACGGTCTGCAGCAGGGGCACTCGACTCACATACGTGGGCCGGGCCCCTTATAGCAAGCTGCATCGGCTACATCGTAGCGGATTTAGCTTCCGGAATCTACCATTGGGGAATTGACAATTACGGCAACGCTGAATCCCCTGTTTTCGGAGCCCAAATTGATGCATTTCAAGGTCACCATAAATGGCCATGGACAATCACCCGACGCGAATTCTCTAACAATCTCCATTCCTTAGCACGAGCAGTGACATTCACAGTCCTTCCAATCAATATCTTCTGCAACGATCCAACTACTCTGGCGTTCGTCGGGGTTTGTTCAGGGTGCATTATGTTCAGCCAACAGTTTCATTCTTGGGCTCATGGTACGAAAAGTAAGTTACCTTCAATCGTGTTAGCATTACAAGACGCCGGAATACTCGTATCGAGGGAACAACACGCTGATCATCATCGCGTTCCGTATAACAACAATTACTGCATTGTTAGTGGAATTTGGAACTCGATTTTGGACGACTCGAAGTTTTTTGAGCTGATGGAGATGATTTTCTTCTTTAAATTCGGAGTTCGGCCAAGATCATGGAGTGAACCAAATTCAGAATGGATTGAAGAAGCTGAAATACAATCAATTTCTGCTTCACATTGAATTCAATTTATAGTATATGAAACAGTTAATATACAATGTTGATTGGCTTAAGTTATATTTTATTTTTTCCGATTAGTATTGAAATGATATTGATATACACCACGAATAAGCATCCTCCACTTTCAACTATAAGAATATAAGTTCGAGTTACATAAAAAAAGGAA</gDNA_template>
            <first_frame> G  I  F  L  G  I  L  I  A  N  P  T  *  K  F  L  Q  Y  V  F  H  S  T  S  K  P  C  H  *  I  L  T  T  S  P  R  *  N  W  N  D  T  E  K  I  Q  Y  K  S  S  *  E  H  L  P  P  C  S  P  T  F  T  S  L  L  Y  L  F  L  H  L  L  F  L  V  Q  H  C  H  N  H  H  Q  T  T  T  R  L  R  T  T  N  L  R  P  T  H  S  H  H  K  K  Q  D  E  *  Y  E  K  C  I  K  *  P  E  F  K  I  H  L  G  S  S  S  L  D  G  K  W  V  H  H  R  A  N  S  F  S  T  V  C  S  R  G  T  R  L  T  Y  V  G  R  A  P  Y  S  K  L  H  R  L  H  R  S  G  F  S  F  R  N  L  P  L  G  N  *  Q  L  R  Q  R  *  I  P  C  F  R  S  P  N  *  C  I  S  R  S  P  *  M  A  M  D  N  H  P  T  R  I  L  *  Q  S  P  F  L  S  T  S  S  D  I  H  S  P  S  N  Q  Y  L  L  Q  R  S  N  Y  S  G  V  R  R  G  L  F  R  V  H  Y  V  Q  P  T  V  S  F  L  G  S  W  Y  E  K  *  V  T  F  N  R  V  S  I  T  R  R  R  N  T  R  I  E  G  T  T  R  *  S  S  S  R  S  V  *  Q  Q  L  L  H  C  *  W  N  L  E  L  D  F  G  R  L  E  V  F  *  A  D  G  D  D  F  L  L  *  I  R  S  S  A  K  I  M  E  *  T  K  F  R  M  D  *  R  S  *  N  T  I  N  F  C  F  T  L  N  S  I  Y  S  I  *  N  S  *  Y  T  M  L  I  G  L  S  Y  I  L  F  F  P  I  S  I  E  M  I  L  I  Y  T  T  N  K  H  P  P  L  S  T  I  R  I  *  V  R  V  T  *  K  K  E </first_frame>
            <second_frame>  V  F  F  L  A  F  *  L  Q  I  Q  P  K  S  S  F  N  M  S  S  I  L  P  Q  N  H  A  I  R  S  S  Q  R  A  L  D  K  I  G  T  I  Q  K  R  S  S  T  N  R  A  K  S  T  F  R  H  V  L  L  P  S  R  V  Y  C  I  S  S  S  T  S  S  S  S  S  N  I  A  T  I  T  T  K  P  P  P  V  S  E  P  L  T  Y  D  P  L  T  P  I  T  K  N  K  M  S  N  T  K  S  V  L  N  D  P  S  L  K  S  T  W  A  H  R  A  W  M  A  S  G  C  T  T  V  L  I  P  L  A  R  S  A  A  G  A  L  D  S  H  T  W  A  G  P  L  I  A  S  C  I  G  Y  I  V  A  D  L  A  S  G  I  Y  H  W  G  I  D  N  Y  G  N  A  E  S  P  V  F  G  A  Q  I  D  A  F  Q  G  H  H  K  W  P  W  T  I  T  R  R  E  F  S  N  N  L  H  S  L  A  R  A  V  T  F  T  V  L  P  I  N  I  F  C  N  D  P  T  T  L  A  F  V  G  V  C  S  G  C  I  M  F  S  Q  Q  F  H  S  W  A  H  G  T  K  S  K  L  P  S  I  V  L  A  L  Q  D  A  G  I  L  V  S  R  E  Q  H  A  D  H  H  R  V  P  Y  N  N  N  Y  C  I  V  S  G  I  W  N  S  I  L  D  D  S  K  F  F  E  L  M  E  M  I  F  F  F  K  F  G  V  R  P  R  S  W  S  E  P  N  S  E  W  I  E  E  A  E  I  Q  S  I  S  A  S  H  *  I  Q  F  I  V  Y  E  T  V  N  I  Q  C  *  L  A  *  V  I  F  Y  F  F  R  L  V  L  K  *  Y  *  Y  T  P  R  I  S  I  L  H  F  Q  L  *  E  Y  K  F  E  L  H  K  K  R   </second_frame>
            <third_frame>   Y  F  S  W  H  F  D  C  K  S  N  L  K  V  P  S  I  C  L  P  F  Y  L  K  T  M  P  L  D  P  H  N  E  P  S  I  K  L  E  R  Y  R  K  D  P  V  Q  I  E  L  R  A  P  S  A  M  F  S  Y  L  H  E  S  I  V  S  L  P  P  P  P  L  P  R  P  T  L  P  Q  S  P  P  N  H  H  P  S  Q  N  H  *  L  T  T  H  S  L  P  S  Q  K  T  R  *  V  I  R  K  V  Y  *  M  T  R  V  *  N  P  L  G  L  I  E  P  G  W  Q  V  G  A  P  P  C  *  F  L  *  H  G  L  Q  Q  G  H  S  T  H  I  R  G  P  G  P  L  *  Q  A  A  S  A  T  S  *  R  I  *  L  P  E  S  T  I  G  E  L  T  I  T  A  T  L  N  P  L  F  S  E  P  K  L  M  H  F  K  V  T  I  N  G  H  G  Q  S  P  D  A  N  S  L  T  I  S  I  P  *  H  E  Q  *  H  S  Q  S  F  Q  S  I  S  S  A  T  I  Q  L  L  W  R  S  S  G  F  V  Q  G  A  L  C  S  A  N  S  F  I  L  G  L  M  V  R  K  V  S  Y  L  Q  S  C  *  H  Y  K  T  P  E  Y  S  Y  R  G  N  N  T  L  I  I  I  A  F  R  I  T  T  I  T  A  L  L  V  E  F  G  T  R  F  W  T  T  R  S  F  L  S  *  W  R  *  F  S  S  L  N  S  E  F  G  Q  D  H  G  V  N  Q  I  Q  N  G  L  K  K  L  K  Y  N  Q  F  L  L  H  I  E  F  N  L  *  Y  M  K  Q  L  I  Y  N  V  D  W  L  K  L  Y  F  I  F  S  D  *  Y  *  N  D  I  D  I  H  H  E  *  A  S  S  T  F  N  Y  K  N  I  S  S  S  Y  I  K  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63565" stop="64593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQIQPKSSFNMSSILPQNHAIRSSQRALDKIGTIQKRSSTNRAKSTFRHVLLPSRVYCISSSTSSSSSNIATITTKPPPVSEPLTYDPLTPITKNKMSNTKSVLNDPSLKSTWAHRAWMASGCTTVLIPLARSAAGALDSHTWAGPLIASCIGYIVADLASGIYHWGIDNYGNAESPVFGAQIDAFQGHHKWPWTITRREFSNNLHSLARAVTFTVLPINIFCNDPTTLAFVGVCSGCIMFSQQFHSWAHGTKSKLPSIVLALQDAGILVSREQHADHHRVPYNNNYCIVSGIWNSILDDSKFFELMEMIFFFKFGVRPRSWSEPNSEWIEEAEIQSISASH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73661" PGL_stop="78332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73661" e_stop="74640"/>
            <exon e_start="75607" e_stop="75750"/>
            <exon e_start="75858" e_stop="76010"/>
            <exon e_start="76622" e_stop="76737"/>
            <exon e_start="77211" e_stop="77378"/>
            <exon e_start="77480" e_stop="77607"/>
            <exon e_start="77708" e_stop="77807"/>
            <exon e_start="77885" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73661" e_stop="74640" e_length="980"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74641" i_stop="75606" i_length="966"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75607" e_stop="75750" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75858" e_stop="76010" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76622" e_stop="76737" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.895">
            <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77211" e_stop="77378" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77480" e_stop="77607" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.624" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77807" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="77885" e_stop="78332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73661" stop="74640"/>
              <exon start="75607" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73662" stop="74209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="74369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73690" stop="74394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73769" stop="74257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73959" stop="74640"/>
              <exon start="75607" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="77959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74276" stop="74640"/>
              <exon start="75607" stop="75736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75613" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="77922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75684" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75706" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75971" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76703" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77229" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77377" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77534" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77745" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244713" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77805" stop="77807"/>
              <exon start="77885" stop="78243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTTATTTTTTAGTCAATTTCTTTGTCCCATTTTCCATTTTTAGCTGTAAAAATGGTTGGTTGTTGATTTTTTCTGATAATTTTTCTGTTTTTTTTTTGTGTCAACTCCTTAGTATTTTCTTGAAATTTGAAGAAAAAAGAAAAAAATCAATCTTTTTGCATTTTGGTGTAGTAAAAATCTAATCTTGCTGGATACCCATCTATGTTCTTGGTTTGATTCTTGATTTTTGCACCCTTTTTAGTTTAATCAAGTTTAGTTTAAGTTGTATCAGCTATATTTTGCTAGATCTGCTTTAATGGGTATTTGTGCTAGTAAAGGTAAACCTAATAATGCTAATAATGGGCACCATGGATCAGGATCAGGAGGAGTTCCAATTCATAGAAATGAGATTCAGTATACCAAATCTCCAGGGCCTGAAGCTCAATTACATGTGAGACCTCCACCAAGCCCAAAACCAGCTGTGAGGTATGATACTATTCTTGGTAAGCCATATGAAGATGTTAAGTTGCACTATACTCTTGGTAAAGAATTGGGTAGGGGTCAATTTGGTGTTACATATCTTTGTACTGAAATTGCAACTGGTCAACAATATGCTTGTAAATCGATATCGAAAAAGAAGCTTGTTACTAAGGCTGATAAGGATGATATGAGGAGGGAGATTAAGATTATGCAGCATTTGAGTGGACAACCTAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAGGTTCAGTGTATCTTGTGATGGAGTTGTGTGGAGGGGGAGAGCTATTCGATAGGATTATAGCAAAGGGGCATTACAGTGAAAGAGCTGCTGCAACAATGTGTAGGGCTATTGTCAATGTTGTGCACGTTTGCAATTTTATGGGCGTGTTGCATCGTGATCTCAAGCCTGAAAACTTTTTGTTGTCTGATAAGAGTGAAAATGCTGCTCTAAAGATTACTGATTTTGGGCTGTCGGTATTCATTCAAGAAG : GTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG : AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG : AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG : GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT : GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG : GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT : GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</gDNA_template>
            <first_frame> V  F  I  F  *  S  I  S  L  S  H  F  P  F  L  A  V  K  M  V  G  C  *  F  F  L  I  I  F  L  F  F  F  C  V  N  S  L  V  F  S  *  N  L  K  K  K  E  K  N  Q  S  F  C  I  L  V  *  *  K  S  N  L  A  G  Y  P  S  M  F  L  V  *  F  L  I  F  A  P  F  L  V  *  S  S  L  V  *  V  V  S  A  I  F  C  *  I  C  F  N  G  Y  L  C  *  *  R  *  T  *  *  C  *  *  W  A  P  W  I  R  I  R  R  S  S  N  S  *  K  *  D  S  V  Y  Q  I  S  R  A  *  S  S  I  T  C  E  T  S  T  K  P  K  T  S  C  E  V  *  Y  Y  S  W  *  A  I  *  R  C  *  V  A  L  Y  S  W  *  R  I  G  *  G  S  I  W  C  Y  I  S  L  Y  *  N  C  N  W  S  T  I  C  L  *  I  D  I  E  K  E  A  C  Y  *  G  *  *  G  *  Y  E  E  G  D  *  D  Y  A  A  F  E  W  T  T  *  Y  C  *  I  *  R  C  L  *  G  *  R  F  S  V  S  C  D  G  V  V  W  R  G  R  A  I  R  *  D  Y  S  K  G  A  L  Q  *  K  S  C  C  N  N  V  *  G  Y  C  Q  C  C  A  R  L  Q  F  Y  G  R  V  A  S  *  S  Q  A  *  K  L  F  V  V  *  *  E  *  K  C  C  S  K  D  Y  *  F  W  A  V  G  I  H  S  R  R :   *  V  V  Q  R  Y  S  W  E  C  L  L  C  C  P  *  G  S  K  E  V  L  W  Q  G  N  R  H  L  E  C  R  C  Y  A  L  Y  T  T  Q  W  C  A  S  I  L  G  R :   N  R  E  G  Y  I  *  C  H  T  *  R  D  H  *  L  *  K  Q  A  L  A  I  C  I  K  *  C  Q  G  P  C  T  E  D  A  D  *  R  S  K  E  T  D  Y  S  C  T  G  S  * :   A  S  L  A  E  G  R  W  C  C  I  R  Q  T  I  R  G  C  C  P  I  K  N  E  A  I  Q  S  Y  E  Q  T  Q  E  T  R  F  E   : G  H  C  R  E  S  L  C  G  R  N  S  R  A  Q  S  N  V  P  Q  Y  *  H  *  *  *  W  H  Y  N  L  *  R  T  E  E  W  I  G  *  T  W  V  K  A  H  R  G  *  S  Q  A  I  D  G  S   : C  *  C  R  W  K  W  L  N  R  L  H  *  I  H  H  R  H  H  A  *  A  Q  A  R  K  R  R  K  S  I  Y  C  I  S  V  F  R  *  R  *  Q  W  :  V  H  Y  K  R  *  T  R  G  C  Y  G  R  T  W  N  R  *  S  I  L  Y  *  G  N  H  I  *  S  G  H  R  Q   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  E  K  W  S  Q  T  T  R  Q  G  L  L  V  P  R  V  S  L  R  A  S  C  R  R  A  V  L  E  N  V  Q  D  E  L  C  R  C  F  H  *  *  C  L  N  V  F  Q  *  K  P  C  T  F  R  I  S  S  V  Q  N  S  L  L  *  V  F  L  F  V  F  C  T  I  F  P  P  L  C  K  L  H  Q  F  G  T  R  K  G  F  E  L  G  H  S  *  Q  M  I  Y  F  N  R  R  R  F  H  H  I  *  C  L  M  S  C  V  I  H  S  L  R  F  I  L  V  K  I  L  N  Q  L  H  F  S  *  *  T   </first_frame>
            <second_frame>  F  L  F  F  S  Q  F  L  C  P  I  F  H  F  *  L  *  K  W  L  V  V  D  F  F  *  *  F  F  C  F  F  F  V  S  T  P  *  Y  F  L  E  I  *  R  K  K  K  K  I  N  L  F  A  F  W  C  S  K  N  L  I  L  L  D  T  H  L  C  S  W  F  D  S  *  F  L  H  P  F  *  F  N  Q  V  *  F  K  L  Y  Q  L  Y  F  A  R  S  A  L  M  G  I  C  A  S  K  G  K  P  N  N  A  N  N  G  H  H  G  S  G  S  G  G  V  P  I  H  R  N  E  I  Q  Y  T  K  S  P  G  P  E  A  Q  L  H  V  R  P  P  P  S  P  K  P  A  V  R  Y  D  T  I  L  G  K  P  Y  E  D  V  K  L  H  Y  T  L  G  K  E  L  G  R  G  Q  F  G  V  T  Y  L  C  T  E  I  A  T  G  Q  Q  Y  A  C  K  S  I  S  K  K  K  L  V  T  K  A  D  K  D  D  M  R  R  E  I  K  I  M  Q  H  L  S  G  Q  P  N  I  V  E  F  K  G  A  Y  E  D  K  G  S  V  Y  L  V  M  E  L  C  G  G  G  E  L  F  D  R  I  I  A  K  G  H  Y  S  E  R  A  A  A  T  M  C  R  A  I  V  N  V  V  H  V  C  N  F  M  G  V  L  H  R  D  L  K  P  E  N  F  L  L  S  D  K  S  E  N  A  A  L  K  I  T  D  F  G  L  S  V  F  I  Q  E   : G  K  S  Y  K  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  R  R  C  Y  G  K  E  I  D  I  W  S  A  G  V  M  L  Y  I  L  L  S  G  V  P  P  F  W  A   : E  T  E  K  G  I  F  D  A  I  L  K  G  T  I  D  F  E  S  K  P  W  P  S  V  S  S  S  A  K  D  L  V  Q  K  M  L  T  K  D  P  K  K  R  I  T  A  A  Q  V  L   : E  H  P  W  L  K  E  G  G  V  A  S  D  K  P  L  E  G  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  K  L  A  L  K  :  V  I  A  E  N  L  S  A  E  E  I  H  G  L  K  A  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  K  S  G  L  A  K  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  T  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  T  A  F  Q  Y  F  D  K  D  S  S  G :   F  I  T  R  D  E  L  E  A  A  M  E  E  H  G  I  G  D  P  S  C  I  R  E  I  I  S  E  V  D  T  D  N  :  D  G  R  I  N  Y  E  E  F  C  T  M  M  R  S  G  A  K  Q  P  G  K  V  F  *  F  H  E  Y  P  C  G  Q  V  V  E  E  L  F  L  K  M  C  R  M  S  S  V  V  A  S  I  S  D  V  *  T  F  S  S  K  N  H  V  H  F  G  S  P  Q  F  K  T  V  F  Y  E  C  F  C  L  F  S  A  R  F  F  L  P  C  V  N  C  I  S  L  G  L  E  K  A  L  N  *  A  T  P  S  K  *  Y  I  S  I  V  E  D  F  T  T  F  D  V  *  *  V  V  S  F  I  H  *  G  S  F  *  *  R  Y  *  I  S  F  I  F  P  N  E  L  </second_frame>
            <third_frame>   F  Y  F  L  V  N  F  F  V  P  F  S  I  F  S  C  K  N  G  W  L  L  I  F  S  D  N  F  S  V  F  F  L  C  Q  L  L  S  I  F  L  K  F  E  E  K  R  K  K  S  I  F  L  H  F  G  V  V  K  I  *  S  C  W  I  P  I  Y  V  L  G  L  I  L  D  F  C  T  L  F  S  L  I  K  F  S  L  S  C  I  S  Y  I  L  L  D  L  L  *  W  V  F  V  L  V  K  V  N  L  I  M  L  I  M  G  T  M  D  Q  D  Q  E  E  F  Q  F  I  E  M  R  F  S  I  P  N  L  Q  G  L  K  L  N  Y  M  *  D  L  H  Q  A  Q  N  Q  L  *  G  M  I  L  F  L  V  S  H  M  K  M  L  S  C  T  I  L  L  V  K  N  W  V  G  V  N  L  V  L  H  I  F  V  L  K  L  Q  L  V  N  N  M  L  V  N  R  Y  R  K  R  S  L  L  L  R  L  I  R  M  I  *  G  G  R  L  R  L  C  S  I  *  V  D  N  L  I  L  L  N  L  K  V  L  M  R  I  K  V  Q  C  I  L  *  W  S  C  V  E  G  E  S  Y  S  I  G  L  *  Q  R  G  I  T  V  K  E  L  L  Q  Q  C  V  G  L  L  S  M  L  C  T  F  A  I  L  W  A  C  C  I  V  I  S  S  L  K  T  F  C  C  L  I  R  V  K  M  L  L  *  R  L  L  I  L  G  C  R  Y  S  F  K  K  :  V  S  R  T  K  I  *  L  G  V  L  T  M  L  P  L  R  F  *  G  G  V  M  A  R  K  *  T  F  G  V  Q  V  L  C  F  I  Y  Y  S  V  V  C  L  H  F  G  Q  :  K  P  R  R  V  Y  L  M  P  Y  L  K  G  P  L  T  L  K  A  S  L  G  H  L  Y  Q  V  V  P  R  T  L  Y  R  R  C  *  L  K  I  Q  R  N  G  L  Q  L  H  R  F  L  :  S  I  L  G  *  R  K  V  V  L  H  Q  T  N  H  *  R  V  L  S  Y  Q  E  *  S  N  S  E  L  *  T  N  S  R  N  S  L  *  R :   S  L  P  R  I  S  L  R  K  K  F  T  G  S  K  Q  C  S  T  I  L  T  L  I  I  V  A  L  *  L  M  K  N  *  R  V  D  W  L  N  L  G  Q  S  S  P  R  L  K  S  S  N  *  W  K  L :   L  M  *  M  E  M  A  Q  S  T  T  L  N  S  S  P  P  P  C  I  S  T  G  *  K  E  T  K  I  Y  I  L  H  F  S  I  S  I  K  I  A  V   : G  S  L  Q  E  M  N  S  R  L  L  W  K  N  M  E  *  V  I  H  P  V  L  G  K  S  Y  L  K  W  T  Q  T  M :   M  E  E  S  I  M  R  N  S  V  Q  *  *  E  V  E  P  N  N  Q  A  R  S  S  S  S  T  S  I  L  A  G  K  L  *  K  S  C  S  *  K  C  A  G  *  A  L  S  L  L  P  L  V  M  F  K  R  F  P  V  K  T  M  Y  I  S  D  L  L  S  S  K  Q  S  F  M  S  V  S  V  C  F  L  H  D  F  S  S  L  V  *  T  A  S  V  W  D  *  K  R  L  *  I  R  P  L  L  A  N  D  I  F  Q  S  S  K  I  S  P  H  L  M  F  N  E  L  C  H  S  F  I  E  V  H  F  S  E  D  I  K  S  A  S  F  F  L  M  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73920" stop="74640"/>
                    <exon start="75607" stop="75750"/>
                    <exon start="75858" stop="76010"/>
                    <exon start="76622" stop="76737"/>
                    <exon start="77211" stop="77378"/>
                    <exon start="77480" stop="77607"/>
                    <exon start="77708" stop="77807"/>
                    <exon start="77885" stop="77959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1602</number_coding_nucleotides>
                  <number_encoded_amino_acids>534</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLYQLYFARSALMGICASKGKPNNANNGHHGSGSGGVPIHRNEIQYTKSPGPEAQLHVRPPPSPKPAVRYDTILGKPYEDVKLHYTLGKELGRGQFGVTYLCTEIATGQQYACKSISKKKLVTKADKDDMRREIKIMQHLSGQPNIVEFKGAYEDKGSVYLVMELCGGGELFDRIIAKGHYSERAAATMCRAIVNVVHVCNFMGVLHRDLKPENFLLSDKSENAALKITDFGLSVFIQEGKSYKDIVGSAYYVAPEVLRRCYGKEIDIWSAGVMLYILLSGVPPFWAETEKGIFDAILKGTIDFESKPWPSVSSSAKDLVQKMLTKDPKKRITAAQVLEHPWLKEGGVASDKPLEGAVLSRMKQFRAMNKLKKLALKVIAENLSAEEIHGLKAMFHNIDTDNSGTITYEELKSGLAKLGSKLTEAEVKQLMEAADVDGNGSIDYTEFITATMHKHRLERDENLYTAFQYFDKDSSGFITRDELEAAMEEHGIGDPSCIREIISEVDTDNDGRINYEEFCTMMRSGAKQPGKVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75594" e_stop="75750"/>
            <exon e_start="75858" e_stop="76010"/>
            <exon e_start="76622" e_stop="76737"/>
            <exon e_start="77211" e_stop="77378"/>
            <exon e_start="77480" e_stop="77607"/>
            <exon e_start="77708" e_stop="77807"/>
            <exon e_start="77885" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75594" e_stop="75750" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75751" i_stop="75857" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75858" e_stop="76010" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76011" i_stop="76621" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76622" e_stop="76737" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.895">
            <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77211" e_stop="77378" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77480" e_stop="77607" e_length="128"/>
          </exon>
          <intron i_serial="5" don_prob="0.624" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77807" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.828" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="77885" e_stop="78332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75594" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75613" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="77922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75684" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75706" stop="75750"/>
              <exon start="75858" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75971" stop="76010"/>
              <exon start="76622" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76703" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77229" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77377" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77534" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77745" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244713" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77805" stop="77807"/>
              <exon start="77885" stop="78243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCAATGCAGGTAAGTCGTACAAAGATATAGTTGGGAGTGCTTACTATGTTGCCCCTGAGGTTCTAAGGAGGTGTTATGGCAAGGAAATAGACATTTGGAGTGCAGGTGTTATGCTTTATATACTACTCAGTGGTGTGCCTCCATTTTGGGCAG : AAACCGAGAAGGGTATATTTGATGCCATACTTAAAGGGACCATTGACTTTGAAAGCAAGCCTTGGCCATCTGTATCAAGTAGTGCCAAGGACCTTGTACAGAAGATGCTGACTAAAGATCCAAAGAAACGGATTACAGCTGCACAGGTTCTTG : AGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG : GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT : GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG : GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT : GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</gDNA_template>
            <first_frame> K  S  N  A  G  K  S  Y  K  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  R  R  C  Y  G  K  E  I  D  I  W  S  A  G  V  M  L  Y  I  L  L  S  G  V  P  P  F  W  A   : E  T  E  K  G  I  F  D  A  I  L  K  G  T  I  D  F  E  S  K  P  W  P  S  V  S  S  S  A  K  D  L  V  Q  K  M  L  T  K  D  P  K  K  R  I  T  A  A  Q  V  L   : E  H  P  W  L  K  E  G  G  V  A  S  D  K  P  L  E  G  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  K  L  A  L  K  :  V  I  A  E  N  L  S  A  E  E  I  H  G  L  K  A  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  K  S  G  L  A  K  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  T  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  T  A  F  Q  Y  F  D  K  D  S  S  G :   F  I  T  R  D  E  L  E  A  A  M  E  E  H  G  I  G  D  P  S  C  I  R  E  I  I  S  E  V  D  T  D  N  :  D  G  R  I  N  Y  E  E  F  C  T  M  M  R  S  G  A  K  Q  P  G  K  V  F  *  F  H  E  Y  P  C  G  Q  V  V  E  E  L  F  L  K  M  C  R  M  S  S  V  V  A  S  I  S  D  V  *  T  F  S  S  K  N  H  V  H  F  G  S  P  Q  F  K  T  V  F  Y  E  C  F  C  L  F  S  A  R  F  F  L  P  C  V  N  C  I  S  L  G  L  E  K  A  L  N  *  A  T  P  S  K  *  Y  I  S  I  V  E  D  F  T  T  F  D  V  *  *  V  V  S  F  I  H  *  G  S  F  *  *  R  Y  *  I  S  F  I  F  P  N  E  L  </first_frame>
            <second_frame>  N  P  M  Q  V  S  R  T  K  I  *  L  G  V  L  T  M  L  P  L  R  F  *  G  G  V  M  A  R  K  *  T  F  G  V  Q  V  L  C  F  I  Y  Y  S  V  V  C  L  H  F  G  Q  :  K  P  R  R  V  Y  L  M  P  Y  L  K  G  P  L  T  L  K  A  S  L  G  H  L  Y  Q  V  V  P  R  T  L  Y  R  R  C  *  L  K  I  Q  R  N  G  L  Q  L  H  R  F  L  :  S  I  L  G  *  R  K  V  V  L  H  Q  T  N  H  *  R  V  L  S  Y  Q  E  *  S  N  S  E  L  *  T  N  S  R  N  S  L  *  R :   S  L  P  R  I  S  L  R  K  K  F  T  G  S  K  Q  C  S  T  I  L  T  L  I  I  V  A  L  *  L  M  K  N  *  R  V  D  W  L  N  L  G  Q  S  S  P  R  L  K  S  S  N  *  W  K  L :   L  M  *  M  E  M  A  Q  S  T  T  L  N  S  S  P  P  P  C  I  S  T  G  *  K  E  T  K  I  Y  I  L  H  F  S  I  S  I  K  I  A  V   : G  S  L  Q  E  M  N  S  R  L  L  W  K  N  M  E  *  V  I  H  P  V  L  G  K  S  Y  L  K  W  T  Q  T  M :   M  E  E  S  I  M  R  N  S  V  Q  *  *  E  V  E  P  N  N  Q  A  R  S  S  S  S  T  S  I  L  A  G  K  L  *  K  S  C  S  *  K  C  A  G  *  A  L  S  L  L  P  L  V  M  F  K  R  F  P  V  K  T  M  Y  I  S  D  L  L  S  S  K  Q  S  F  M  S  V  S  V  C  F  L  H  D  F  S  S  L  V  *  T  A  S  V  W  D  *  K  R  L  *  I  R  P  L  L  A  N  D  I  F  Q  S  S  K  I  S  P  H  L  M  F  N  E  L  C  H  S  F  I  E  V  H  F  S  E  D  I  K  S  A  S  F  F  L  M  N  * </second_frame>
            <third_frame>   I  Q  C  R  *  V  V  Q  R  Y  S  W  E  C  L  L  C  C  P  *  G  S  K  E  V  L  W  Q  G  N  R  H  L  E  C  R  C  Y  A  L  Y  T  T  Q  W  C  A  S  I  L  G  R :   N  R  E  G  Y  I  *  C  H  T  *  R  D  H  *  L  *  K  Q  A  L  A  I  C  I  K  *  C  Q  G  P  C  T  E  D  A  D  *  R  S  K  E  T  D  Y  S  C  T  G  S  * :   A  S  L  A  E  G  R  W  C  C  I  R  Q  T  I  R  G  C  C  P  I  K  N  E  A  I  Q  S  Y  E  Q  T  Q  E  T  R  F  E   : G  H  C  R  E  S  L  C  G  R  N  S  R  A  Q  S  N  V  P  Q  Y  *  H  *  *  *  W  H  Y  N  L  *  R  T  E  E  W  I  G  *  T  W  V  K  A  H  R  G  *  S  Q  A  I  D  G  S   : C  *  C  R  W  K  W  L  N  R  L  H  *  I  H  H  R  H  H  A  *  A  Q  A  R  K  R  R  K  S  I  Y  C  I  S  V  F  R  *  R  *  Q  W  :  V  H  Y  K  R  *  T  R  G  C  Y  G  R  T  W  N  R  *  S  I  L  Y  *  G  N  H  I  *  S  G  H  R  Q   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  E  K  W  S  Q  T  T  R  Q  G  L  L  V  P  R  V  S  L  R  A  S  C  R  R  A  V  L  E  N  V  Q  D  E  L  C  R  C  F  H  *  *  C  L  N  V  F  Q  *  K  P  C  T  F  R  I  S  S  V  Q  N  S  L  L  *  V  F  L  F  V  F  C  T  I  F  P  P  L  C  K  L  H  Q  F  G  T  R  K  G  F  E  L  G  H  S  *  Q  M  I  Y  F  N  R  R  R  F  H  H  I  *  C  L  M  S  C  V  I  H  S  L  R  F  I  L  V  K  I  L  N  Q  L  H  F  S  *  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75594" stop="75750"/>
                    <exon start="75858" stop="76010"/>
                    <exon start="76622" stop="76737"/>
                    <exon start="77211" stop="77378"/>
                    <exon start="77480" stop="77607"/>
                    <exon start="77708" stop="77807"/>
                    <exon start="77885" stop="77959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>894</number_coding_nucleotides>
                  <number_encoded_amino_acids>298</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNAGKSYKDIVGSAYYVAPEVLRRCYGKEIDIWSAGVMLYILLSGVPPFWAETEKGIFDAILKGTIDFESKPWPSVSSSAKDLVQKMLTKDPKKRITAAQVLEHPWLKEGGVASDKPLEGAVLSRMKQFRAMNKLKKLALKVIAENLSAEEIHGLKAMFHNIDTDNSGTITYEELKSGLAKLGSKLTEAEVKQLMEAADVDGNGSIDYTEFITATMHKHRLERDENLYTAFQYFDKDSSGFITRDELEAAMEEHGIGDPSCIREIISEVDTDNDGRINYEEFCTMMRSGAKQPGKVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="76105" e_stop="76737"/>
            <exon e_start="77211" e_stop="77378"/>
            <exon e_start="77480" e_stop="77607"/>
            <exon e_start="77708" e_stop="77807"/>
            <exon e_start="77885" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76105" e_stop="76737" e_length="633"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.895">
            <gDNA_intron_boundary i_start="76738" i_stop="77210" i_length="473"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77211" e_stop="77378" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77480" e_stop="77607" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.624" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77807" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.828" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="77885" e_stop="78332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76105" stop="76734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76105" stop="76392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76703" stop="76737"/>
              <exon start="77211" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77229" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77377" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77534" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77745" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244713" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77805" stop="77807"/>
              <exon start="77885" stop="78243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATATAGCACTTGCATACTCCTTCATTTCTAGTAGTTATTAGTAGAAAACAATTTCTTAGGCATCGTCTCTCAGTCGATCAGATTATTCTGCTTTATCTCACCCAAGGGGCCTACCTGCTTTCCTTTGCAAGATCTTTACTTTTATCTTCAATTACGGTTGGCTTCTTGAGCTGGATTTGTTATCAAGTAAACCACAGTTGTATCTTCTTGTGAAAGGAGTTAGACATATGATGGGGCCAAAACCAAGTCCTTGCCGCCAAAATTAGCTTATATAGAGATCAATCTGTTTCTGGCCTGTAAGTTCTAACAGCGTCATTTCTAGCTTTAGGATATGCCAAATAATTTTAGTTCTGCGCAGTCTTATACTCTGTTAAAGAGCCTCTCTTGATTTCACAAATGCCATTATATATCTGAATAGCATGATTTTATGTTTGGACTGGTGATTATACATGTGTTGCCAGTATGGTTTGTTATATCTTATTCTAACCATACTGTTGGTGCGTGTAATTGACAGAGCATCCTTGGCTGAAGGAAGGTGGTGTTGCATCAGACAAACCATTAGAGGGTGCTGTCCTATCAAGAATGAAGCAATTCAGAGCTATGAACAAACTCAAGAAACTCGCTTTGAAG : GTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT : GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG : GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT : GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</gDNA_template>
            <first_frame> N  I  *  H  L  H  T  P  S  F  L  V  V  I  S  R  K  Q  F  L  R  H  R  L  S  V  D  Q  I  I  L  L  Y  L  T  Q  G  A  Y  L  L  S  F  A  R  S  L  L  L  S  S  I  T  V  G  F  L  S  W  I  C  Y  Q  V  N  H  S  C  I  F  L  *  K  E  L  D  I  *  W  G  Q  N  Q  V  L  A  A  K  I  S  L  Y  R  D  Q  S  V  S  G  L  *  V  L  T  A  S  F  L  A  L  G  Y  A  K  *  F  *  F  C  A  V  L  Y  S  V  K  E  P  L  L  I  S  Q  M  P  L  Y  I  *  I  A  *  F  Y  V  W  T  G  D  Y  T  C  V  A  S  M  V  C  Y  I  L  F  *  P  Y  C  W  C  V  *  L  T  E  H  P  W  L  K  E  G  G  V  A  S  D  K  P  L  E  G  A  V  L  S  R  M  K  Q  F  R  A  M  N  K  L  K  K  L  A  L  K  :  V  I  A  E  N  L  S  A  E  E  I  H  G  L  K  A  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  K  S  G  L  A  K  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  T  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  T  A  F  Q  Y  F  D  K  D  S  S  G :   F  I  T  R  D  E  L  E  A  A  M  E  E  H  G  I  G  D  P  S  C  I  R  E  I  I  S  E  V  D  T  D  N  :  D  G  R  I  N  Y  E  E  F  C  T  M  M  R  S  G  A  K  Q  P  G  K  V  F  *  F  H  E  Y  P  C  G  Q  V  V  E  E  L  F  L  K  M  C  R  M  S  S  V  V  A  S  I  S  D  V  *  T  F  S  S  K  N  H  V  H  F  G  S  P  Q  F  K  T  V  F  Y  E  C  F  C  L  F  S  A  R  F  F  L  P  C  V  N  C  I  S  L  G  L  E  K  A  L  N  *  A  T  P  S  K  *  Y  I  S  I  V  E  D  F  T  T  F  D  V  *  *  V  V  S  F  I  H  *  G  S  F  *  *  R  Y  *  I  S  F  I  F  P  N  E  L  </first_frame>
            <second_frame>  T  Y  S  T  C  I  L  L  H  F  *  *  L  L  V  E  N  N  F  L  G  I  V  S  Q  S  I  R  L  F  C  F  I  S  P  K  G  P  T  C  F  P  L  Q  D  L  Y  F  Y  L  Q  L  R  L  A  S  *  A  G  F  V  I  K  *  T  T  V  V  S  S  C  E  R  S  *  T  Y  D  G  A  K  T  K  S  L  P  P  K  L  A  Y  I  E  I  N  L  F  L  A  C  K  F  *  Q  R  H  F  *  L  *  D  M  P  N  N  F  S  S  A  Q  S  Y  T  L  L  K  S  L  S  *  F  H  K  C  H  Y  I  S  E  *  H  D  F  M  F  G  L  V  I  I  H  V  L  P  V  W  F  V  I  S  Y  S  N  H  T  V  G  A  C  N  *  Q  S  I  L  G  *  R  K  V  V  L  H  Q  T  N  H  *  R  V  L  S  Y  Q  E  *  S  N  S  E  L  *  T  N  S  R  N  S  L  *  R :   S  L  P  R  I  S  L  R  K  K  F  T  G  S  K  Q  C  S  T  I  L  T  L  I  I  V  A  L  *  L  M  K  N  *  R  V  D  W  L  N  L  G  Q  S  S  P  R  L  K  S  S  N  *  W  K  L :   L  M  *  M  E  M  A  Q  S  T  T  L  N  S  S  P  P  P  C  I  S  T  G  *  K  E  T  K  I  Y  I  L  H  F  S  I  S  I  K  I  A  V   : G  S  L  Q  E  M  N  S  R  L  L  W  K  N  M  E  *  V  I  H  P  V  L  G  K  S  Y  L  K  W  T  Q  T  M :   M  E  E  S  I  M  R  N  S  V  Q  *  *  E  V  E  P  N  N  Q  A  R  S  S  S  S  T  S  I  L  A  G  K  L  *  K  S  C  S  *  K  C  A  G  *  A  L  S  L  L  P  L  V  M  F  K  R  F  P  V  K  T  M  Y  I  S  D  L  L  S  S  K  Q  S  F  M  S  V  S  V  C  F  L  H  D  F  S  S  L  V  *  T  A  S  V  W  D  *  K  R  L  *  I  R  P  L  L  A  N  D  I  F  Q  S  S  K  I  S  P  H  L  M  F  N  E  L  C  H  S  F  I  E  V  H  F  S  E  D  I  K  S  A  S  F  F  L  M  N  * </second_frame>
            <third_frame>   H  I  A  L  A  Y  S  F  I  S  S  S  Y  *  *  K  T  I  S  *  A  S  S  L  S  R  S  D  Y  S  A  L  S  H  P  R  G  L  P  A  F  L  C  K  I  F  T  F  I  F  N  Y  G  W  L  L  E  L  D  L  L  S  S  K  P  Q  L  Y  L  L  V  K  G  V  R  H  M  M  G  P  K  P  S  P  C  R  Q  N  *  L  I  *  R  S  I  C  F  W  P  V  S  S  N  S  V  I  S  S  F  R  I  C  Q  I  I  L  V  L  R  S  L  I  L  C  *  R  A  S  L  D  F  T  N  A  I  I  Y  L  N  S  M  I  L  C  L  D  W  *  L  Y  M  C  C  Q  Y  G  L  L  Y  L  I  L  T  I  L  L  V  R  V  I  D  R  A  S  L  A  E  G  R  W  C  C  I  R  Q  T  I  R  G  C  C  P  I  K  N  E  A  I  Q  S  Y  E  Q  T  Q  E  T  R  F  E   : G  H  C  R  E  S  L  C  G  R  N  S  R  A  Q  S  N  V  P  Q  Y  *  H  *  *  *  W  H  Y  N  L  *  R  T  E  E  W  I  G  *  T  W  V  K  A  H  R  G  *  S  Q  A  I  D  G  S   : C  *  C  R  W  K  W  L  N  R  L  H  *  I  H  H  R  H  H  A  *  A  Q  A  R  K  R  R  K  S  I  Y  C  I  S  V  F  R  *  R  *  Q  W  :  V  H  Y  K  R  *  T  R  G  C  Y  G  R  T  W  N  R  *  S  I  L  Y  *  G  N  H  I  *  S  G  H  R  Q   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  E  K  W  S  Q  T  T  R  Q  G  L  L  V  P  R  V  S  L  R  A  S  C  R  R  A  V  L  E  N  V  Q  D  E  L  C  R  C  F  H  *  *  C  L  N  V  F  Q  *  K  P  C  T  F  R  I  S  S  V  Q  N  S  L  L  *  V  F  L  F  V  F  C  T  I  F  P  P  L  C  K  L  H  Q  F  G  T  R  K  G  F  E  L  G  H  S  *  Q  M  I  Y  F  N  R  R  R  F  H  H  I  *  C  L  M  S  C  V  I  H  S  L  R  F  I  L  V  K  I  L  N  Q  L  H  F  S  *  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76615" stop="76737"/>
                    <exon start="77211" stop="77378"/>
                    <exon start="77480" stop="77607"/>
                    <exon start="77708" stop="77807"/>
                    <exon start="77885" stop="77959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTEHPWLKEGGVASDKPLEGAVLSRMKQFRAMNKLKKLALKVIAENLSAEEIHGLKAMFHNIDTDNSGTITYEELKSGLAKLGSKLTEAEVKQLMEAADVDGNGSIDYTEFITATMHKHRLERDENLYTAFQYFDKDSSGFITRDELEAAMEEHGIGDPSCIREIISEVDTDNDGRINYEEFCTMMRSGAKQPGKVF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76114" stop="76320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLHTPSFLVVISRKQFLRHRLSVDQIILLYLTQGAYLLSFARSLLLSSITVGFLSWICYQVNHSCIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="77201" e_stop="77378"/>
            <exon e_start="77480" e_stop="77607"/>
            <exon e_start="77708" e_stop="77807"/>
            <exon e_start="77885" e_stop="78332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77201" e_stop="77378" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77379" i_stop="77479" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77480" e_stop="77607" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.624" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77608" i_stop="77707" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="77708" e_stop="77807" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.828" acc_prob="0.985">
            <gDNA_intron_boundary i_start="77808" i_stop="77884" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="77885" e_stop="78332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77201" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77229" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77240" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77362" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374897" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77377" stop="77378"/>
              <exon start="77480" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231896" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77534" stop="77607"/>
              <exon start="77708" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241603" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77745" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244713" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77807"/>
              <exon start="77885" stop="78247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77805" stop="77807"/>
              <exon start="77885" stop="78243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGAATCAGGTCATTGCCGAGAATCTCTCTGCGGAAGAAATTCACGGGCTCAAAGCAATGTTCCACAATATTGACACTGATAATAGTGGCACTATAACTTATGAAGAACTGAAGAGTGGATTGGCTAAACTTGGGTCAAAGCTCACCGAGGCTGAAGTCAAGCAATTGATGGAAGCT : GCTGATGTAGATGGAAATGGCTCAATCGACTACACTGAATTCATCACCGCCACCATGCATAAGCACAGGCTAGAAAGAGACGAAAATCTATATACTGCATTTCAGTATTTCGATAAAGATAGCAGTGG : GTTCATTACAAGAGATGAACTCGAGGCTGCTATGGAAGAACATGGAATAGGTGATCCATCCTGTATTAGGGAAATCATATCTGAAGTGGACACAGACAAT : GATGGAAGAATCAATTATGAGGAATTCTGTACAATGATGAGAAGTGGAGCCAAACAACCAGGCAAGGTCTTCTAGTTCCACGAGTATCCTTGCGGGCAAGTTGTAGAAGAGCTGTTCTTGAAAATGTGCAGGATGAGCTCTGTCGTTGCTTCCATTAGTGATGTTTAAACGTTTTCCAGTAAAAACCATGTACATTTCGGATCTCCTCAGTTCAAAACAGTCTTTTATGAGTGTTTCTGTTTGTTTTCTGCACGATTTTTCCTCCCTTGTGTAAACTGCATCAGTTTGGGACTAGAAAAGGCTTTGAATTAGGCCACTCCTAGCAAATGATATATTTCAATCGTCGAAGATTTCACCACATTTGATGTTTAATGAGTTGTGTCATTCATTCATTGAGGTTCATTTTAGTGAAGATATTAAATCAGCTTCATTTTTCCTAATGAACTAG</gDNA_template>
            <first_frame> L  E  S  G  H  C  R  E  S  L  C  G  R  N  S  R  A  Q  S  N  V  P  Q  Y  *  H  *  *  *  W  H  Y  N  L  *  R  T  E  E  W  I  G  *  T  W  V  K  A  H  R  G  *  S  Q  A  I  D  G  S   : C  *  C  R  W  K  W  L  N  R  L  H  *  I  H  H  R  H  H  A  *  A  Q  A  R  K  R  R  K  S  I  Y  C  I  S  V  F  R  *  R  *  Q  W  :  V  H  Y  K  R  *  T  R  G  C  Y  G  R  T  W  N  R  *  S  I  L  Y  *  G  N  H  I  *  S  G  H  R  Q   : *  W  K  N  Q  L  *  G  I  L  Y  N  D  E  K  W  S  Q  T  T  R  Q  G  L  L  V  P  R  V  S  L  R  A  S  C  R  R  A  V  L  E  N  V  Q  D  E  L  C  R  C  F  H  *  *  C  L  N  V  F  Q  *  K  P  C  T  F  R  I  S  S  V  Q  N  S  L  L  *  V  F  L  F  V  F  C  T  I  F  P  P  L  C  K  L  H  Q  F  G  T  R  K  G  F  E  L  G  H  S  *  Q  M  I  Y  F  N  R  R  R  F  H  H  I  *  C  L  M  S  C  V  I  H  S  L  R  F  I  L  V  K  I  L  N  Q  L  H  F  S  *  *  T   </first_frame>
            <second_frame>  W  N  Q  V  I  A  E  N  L  S  A  E  E  I  H  G  L  K  A  M  F  H  N  I  D  T  D  N  S  G  T  I  T  Y  E  E  L  K  S  G  L  A  K  L  G  S  K  L  T  E  A  E  V  K  Q  L  M  E  A  :  A  D  V  D  G  N  G  S  I  D  Y  T  E  F  I  T  A  T  M  H  K  H  R  L  E  R  D  E  N  L  Y  T  A  F  Q  Y  F  D  K  D  S  S  G :   F  I  T  R  D  E  L  E  A  A  M  E  E  H  G  I  G  D  P  S  C  I  R  E  I  I  S  E  V  D  T  D  N  :  D  G  R  I  N  Y  E  E  F  C  T  M  M  R  S  G  A  K  Q  P  G  K  V  F  *  F  H  E  Y  P  C  G  Q  V  V  E  E  L  F  L  K  M  C  R  M  S  S  V  V  A  S  I  S  D  V  *  T  F  S  S  K  N  H  V  H  F  G  S  P  Q  F  K  T  V  F  Y  E  C  F  C  L  F  S  A  R  F  F  L  P  C  V  N  C  I  S  L  G  L  E  K  A  L  N  *  A  T  P  S  K  *  Y  I  S  I  V  E  D  F  T  T  F  D  V  *  *  V  V  S  F  I  H  *  G  S  F  *  *  R  Y  *  I  S  F  I  F  P  N  E  L  </second_frame>
            <third_frame>   G  I  R  S  L  P  R  I  S  L  R  K  K  F  T  G  S  K  Q  C  S  T  I  L  T  L  I  I  V  A  L  *  L  M  K  N  *  R  V  D  W  L  N  L  G  Q  S  S  P  R  L  K  S  S  N  *  W  K  L :   L  M  *  M  E  M  A  Q  S  T  T  L  N  S  S  P  P  P  C  I  S  T  G  *  K  E  T  K  I  Y  I  L  H  F  S  I  S  I  K  I  A  V   : G  S  L  Q  E  M  N  S  R  L  L  W  K  N  M  E  *  V  I  H  P  V  L  G  K  S  Y  L  K  W  T  Q  T  M :   M  E  E  S  I  M  R  N  S  V  Q  *  *  E  V  E  P  N  N  Q  A  R  S  S  S  S  T  S  I  L  A  G  K  L  *  K  S  C  S  *  K  C  A  G  *  A  L  S  L  L  P  L  V  M  F  K  R  F  P  V  K  T  M  Y  I  S  D  L  L  S  S  K  Q  S  F  M  S  V  S  V  C  F  L  H  D  F  S  S  L  V  *  T  A  S  V  W  D  *  K  R  L  *  I  R  P  L  L  A  N  D  I  F  Q  S  S  K  I  S  P  H  L  M  F  N  E  L  C  H  S  F  I  E  V  H  F  S  E  D  I  K  S  A  S  F  F  L  M  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77202" stop="77378"/>
                    <exon start="77480" stop="77607"/>
                    <exon start="77708" stop="77807"/>
                    <exon start="77885" stop="77959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNQVIAENLSAEEIHGLKAMFHNIDTDNSGTITYEELKSGLAKLGSKLTEAEVKQLMEAADVDGNGSIDYTEFITATMHKHRLERDENLYTAFQYFDKDSSGFITRDELEAAMEEHGIGDPSCIREIISEVDTDNDGRINYEEFCTMMRSGAKQPGKVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="80397" PGL_stop="78106"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79367" e_stop="78754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79367" e_stop="78754" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79367" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79365" stop="78754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79363" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373374" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79363" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373462" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTTTGCAGCTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAGTGT</gDNA_template>
            <first_frame> F  F  L  Q  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  K  L  I  D  V  S   </first_frame>
            <second_frame>  S  F  C  S  S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L  S  *  L  M  L  V  </second_frame>
            <third_frame>   L  F  A  A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  A  N  *  C  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="80377" e_stop="80342"/>
            <exon e_start="79355" e_stop="78757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.917" e_score="0.971"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="80377" e_stop="80342" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79355" e_stop="78757" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80377" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80376" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG : CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAG</gDNA_template>
            <first_frame> T  S  S  S  S  V  *  L  V  F  L  K  :  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  K  L  I  D  V   </first_frame>
            <second_frame>  H  H  H  L  V  F  D  *  S  F  *  S :   S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L  S  *  L  M  L  </second_frame>
            <third_frame>   I  I  I  *  C  L  I  S  L  S  K   : A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  A  N  *  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79522" e_stop="79518"/>
            <exon e_start="79355" e_stop="78757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.680" acc_prob="0.917" e_score="0.800"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.800">
            <gDNA_exon_boundary e_start="79522" e_stop="79518" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.680" acc_prob="0.917">
            <gDNA_intron_boundary i_start="79517" i_stop="79356" i_length="162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79355" e_stop="78757" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79522" stop="79518"/>
              <exon start="79355" stop="78971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79208" stop="78770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79130" stop="78768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAG : CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAAGCTAATTGATGTTAG</gDNA_template>
            <first_frame> K  S :   S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L  S  *  L  M  L  </first_frame>
            <second_frame>  R   : A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  A  N  *  C  * </second_frame>
            <third_frame>   E  :  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  K  L  I  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="80377" e_stop="80342"/>
            <exon e_start="79355" e_stop="78772"/>
            <exon e_start="78159" e_stop="78106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.917" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.206" e_score="0.998"/>
          <exon-only e_score="0.537"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="80377" e_stop="80342" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="79355" e_stop="78772" e_length="584"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.206">
            <gDNA_intron_boundary i_start="78771" i_stop="78160" i_length="612"/>
          </intron>
          <exon e_serial="3" e_score="0.537">
            <gDNA_exon_boundary e_start="78159" e_stop="78106" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80377" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80376" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79158" stop="78772"/>
              <exon start="78159" stop="78106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252737" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG : CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA : TTTACACAAGGGAGGAAAAATCGTGCAGAAAACAAACAGAAACACTCATAAAAG</gDNA_template>
            <first_frame> T  S  S  S  S  V  *  L  V  F  L  K  :  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  N :   L  H  K  G  G  K  I  V  Q  K  T  N  R  N  T  H  K   </first_frame>
            <second_frame>  H  H  H  L  V  F  D  *  S  F  *  S :   S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L   : I  Y  T  R  E  E  K  S  C  R  K  Q  T  E  T  L  I  K  </second_frame>
            <third_frame>   I  I  I  *  C  L  I  S  L  S  K   : A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  :  F  T  Q  G  R  K  N  R  A  E  N  K  Q  K  H  S  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="80377" e_stop="80342"/>
            <exon e_start="79355" e_stop="78772"/>
            <exon e_start="78145" e_stop="78108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.917" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.579"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="80377" e_stop="80342" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="79355" e_stop="78772" e_length="584"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78771" i_stop="78146" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="0.579">
            <gDNA_exon_boundary e_start="78145" e_stop="78108" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80377" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80376" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78772"/>
              <exon start="78145" stop="78108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG : CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA : GAAAAATCGTGCAGAAAACAAACAGAAACACTCATAAA</gDNA_template>
            <first_frame> T  S  S  S  S  V  *  L  V  F  L  K  :  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  K :   K  N  R  A  E  N  K  Q  K  H  S  *  </first_frame>
            <second_frame>  H  H  H  L  V  F  D  *  S  F  *  S :   S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L   : R  K  I  V  Q  K  T  N  R  N  T  H  K </second_frame>
            <third_frame>   I  I  I  *  C  L  I  S  L  S  K   : A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  :  E  K  S  C  R  K  Q  T  E  T  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="80397" e_stop="80342"/>
            <exon e_start="79355" e_stop="78772"/>
            <exon e_start="78574" e_stop="78543"/>
            <exon e_start="78159" e_stop="78113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.917" e_score="0.971"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.206" e_score="0.594"/>
          <exon-only e_score="0.532"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="80397" e_stop="80342" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.917">
            <gDNA_intron_boundary i_start="80341" i_stop="79356" i_length="986"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79355" e_stop="78772" e_length="584"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78771" i_stop="78575" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="0.594">
            <gDNA_exon_boundary e_start="78574" e_stop="78543" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="0.884" acc_prob="0.206">
            <gDNA_intron_boundary i_start="78542" i_stop="78160" i_length="383"/>
          </intron>
          <exon e_serial="4" e_score="0.532">
            <gDNA_exon_boundary e_start="78159" e_stop="78113" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80397" stop="80342"/>
              <exon start="79355" stop="78772"/>
              <exon start="78574" stop="78543"/>
              <exon start="78159" stop="78113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80377" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80376" stop="80342"/>
              <exon start="79355" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="78903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79355" stop="79040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79320" stop="78997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTTTCTTCTCTTGAAGAACATCATCATCTAGTGTTTGATTAGTCTTTCTAAAG : CTCTCTTGTTATCAATTTACCTAGCTTCAGTTTCGGAGCGTGAGAAGTTCTCTTCAAGCTATTTACATGGTTGATATCGACATCCAGATCCCATCTGCTTTCGATCCATTTGCTGAGGCTAAGGACTCCGGTGCACCTGGAGCCAAGGAGTATGTTCATATTCGTATACAACAAAGGAATGGAAAGAAAAGCTTGACGACTGTTCAAGGACTGAGGAAAGAATTCAGTTACGAAAAAATCCTCAAAGATCTGAAAAAGGAATTCTGTTGCAACGGGAACGTTGTGCAGGATAAGGAACTTGGCAAAGTGATACAACTTCAAGGTGATCAAAGGAAGAATGTTTCTCATTTCCTTGTGACTGCTGGTGTTGTCAAGAAGGATCAGATCAAGATTCATGGTTTCTAAGTCGTTGGCTATTTCGAGTTGTTGAAGCATATATAGTAATATAATCACAGTTGTTTGAATTTGTTGTTAAGAAGTGTTGGTTTTTGTTAATGCCCATGATATCTTGCCATGGGTTTCTTTCTGAATTGTGCTGGTTGTACTTTGTTTACAGATAATAATAATAAATTTGGTTTTCTTAA : AAACATATACAACAGATAAGAGAAATGAACAG : TTTACACAAGGGAGGAAAAATCGTGCAGAAAACAAACAGAAACACTC</gDNA_template>
            <first_frame> S  F  S  S  L  E  E  H  H  H  L  V  F  D  *  S  F  *  S :   S  L  V  I  N  L  P  S  F  S  F  G  A  *  E  V  L  F  K  L  F  T  W  L  I  S  T  S  R  S  H  L  L  S  I  H  L  L  R  L  R  T  P  V  H  L  E  P  R  S  M  F  I  F  V  Y  N  K  G  M  E  R  K  A  *  R  L  F  K  D  *  G  K  N  S  V  T  K  K  S  S  K  I  *  K  R  N  S  V  A  T  G  T  L  C  R  I  R  N  L  A  K  *  Y  N  F  K  V  I  K  G  R  M  F  L  I  S  L  *  L  L  V  L  S  R  R  I  R  S  R  F  M  V  S  K  S  L  A  I  S  S  C  *  S  I  Y  S  N  I  I  T  V  V  *  I  C  C  *  E  V  L  V  F  V  N  A  H  D  I  L  P  W  V  S  F  *  I  V  L  V  V  L  C  L  Q  I  I  I  I  N  L  V  F  L   : K  T  Y  T  T  D  K  R  N  E  Q  :  F  T  Q  G  R  K  N  R  A  E  N  K  Q  K  H   </first_frame>
            <second_frame>  V  F  L  L  L  K  N  I  I  I  *  C  L  I  S  L  S  K   : A  L  L  L  S  I  Y  L  A  S  V  S  E  R  E  K  F  S  S  S  Y  L  H  G  *  Y  R  H  P  D  P  I  C  F  R  S  I  C  *  G  *  G  L  R  C  T  W  S  Q  G  V  C  S  Y  S  Y  T  T  K  E  W  K  E  K  L  D  D  C  S  R  T  E  E  R  I  Q  L  R  K  N  P  Q  R  S  E  K  G  I  L  L  Q  R  E  R  C  A  G  *  G  T  W  Q  S  D  T  T  S  R  *  S  K  E  E  C  F  S  F  P  C  D  C  W  C  C  Q  E  G  S  D  Q  D  S  W  F  L  S  R  W  L  F  R  V  V  E  A  Y  I  V  I  *  S  Q  L  F  E  F  V  V  K  K  C  W  F  L  L  M  P  M  I  S  C  H  G  F  L  S  E  L  C  W  L  Y  F  V  Y  R  *  *  *  *  I  W  F  S  *  :  K  H  I  Q  Q  I  R  E  M  N  S :   L  H  K  G  G  K  I  V  Q  K  T  N  R  N  T  </second_frame>
            <third_frame>   F  F  F  S  *  R  T  S  S  S  S  V  *  L  V  F  L  K  :  L  S  C  Y  Q  F  T  *  L  Q  F  R  S  V  R  S  S  L  Q  A  I  Y  M  V  D  I  D  I  Q  I  P  S  A  F  D  P  F  A  E  A  K  D  S  G  A  P  G  A  K  E  Y  V  H  I  R  I  Q  Q  R  N  G  K  K  S  L  T  T  V  Q  G  L  R  K  E  F  S  Y  E  K  I  L  K  D  L  K  K  E  F  C  C  N  G  N  V  V  Q  D  K  E  L  G  K  V  I  Q  L  Q  G  D  Q  R  K  N  V  S  H  F  L  V  T  A  G  V  V  K  K  D  Q  I  K  I  H  G  F  *  V  V  G  Y  F  E  L  L  K  H  I  *  *  Y  N  H  S  C  L  N  L  L  L  R  S  V  G  F  C  *  C  P  *  Y  L  A  M  G  F  F  L  N  C  A  G  C  T  L  F  T  D  N  N  N  K  F  G  F  L  K :   N  I  Y  N  R  *  E  K  *  T   : V  Y  T  R  E  E  K  S  C  R  K  Q  T  E  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79331" stop="78951"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQFRSVRSSLQAIYMVDIDIQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSHFLVTAGVVKKDQIKIHGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="80361" e_stop="79892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="80361" e_stop="79892" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80361" stop="79892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317865" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATTAGTCTTTCTAAAGGTTAGTTTATTCCTCTATTATTTTCAGTTTTAAGTAAATTTTGGTTTTTTTTGTGTGTGTAGTTTATCTTGCTAGTAGAGTCATGTTGGTGTTTTTTGTTTTTGTTTTTTGGTTGATTAGACATTTTTAACTTTGTGGGTTGTTGGGTTGTGGTCTGTTTGTGGCTTTAGTCAATCAAAGTTTGGATTTTGATACTTGGATCATCTATGTTATAGTTAAAGATGGTCTTTTTCAGCTTAAAGTTAGTTGGTTTTTTTTTTAACTTTGTTAAATTTGGACTTTGCTTGTATGTGCAGTTTTAGTCAATTAAAGTTAGGATCTTTGGATTCTCTATGGATGATTGCAATTTTATTTAGTTGGGAACTTTTGATATGTTTGATCTTGATGTGTTCTCATCTCTGATCTAGTTGTGGTAGACATAGTTATCTTGTACCTGTGGGCGGTGTTGGG</gDNA_template>
            <first_frame> F  D  *  S  F  *  R  L  V  Y  S  S  I  I  F  S  F  K  *  I  L  V  F  F  V  C  V  V  Y  L  A  S  R  V  M  L  V  F  F  V  F  V  F  W  L  I  R  H  F  *  L  C  G  L  L  G  C  G  L  F  V  A  L  V  N  Q  S  L  D  F  D  T  W  I  I  Y  V  I  V  K  D  G  L  F  Q  L  K  V  S  W  F  F  F  *  L  C  *  I  W  T  L  L  V  C  A  V  L  V  N  *  S  *  D  L  W  I  L  Y  G  *  L  Q  F  Y  L  V  G  N  F  *  Y  V  *  S  *  C  V  L  I  S  D  L  V  V  V  D  I  V  I  L  Y  L  W  A  V  L   </first_frame>
            <second_frame>  L  I  S  L  S  K  G  *  F  I  P  L  L  F  S  V  L  S  K  F  W  F  F  L  C  V  *  F  I  L  L  V  E  S  C  W  C  F  L  F  L  F  F  G  *  L  D  I  F  N  F  V  G  C  W  V  V  V  C  L  W  L  *  S  I  K  V  W  I  L  I  L  G  S  S  M  L  *  L  K  M  V  F  F  S  L  K  L  V  G  F  F  F  N  F  V  K  F  G  L  C  L  Y  V  Q  F  *  S  I  K  V  R  I  F  G  F  S  M  D  D  C  N  F  I  *  L  G  T  F  D  M  F  D  L  D  V  F  S  S  L  I  *  L  W  *  T  *  L  S  C  T  C  G  R  C  W  </second_frame>
            <third_frame>   *  L  V  F  L  K  V  S  L  F  L  Y  Y  F  Q  F  *  V  N  F  G  F  F  C  V  C  S  L  S  C  *  *  S  H  V  G  V  F  C  F  C  F  L  V  D  *  T  F  L  T  L  W  V  V  G  L  W  S  V  C  G  F  S  Q  S  K  F  G  F  *  Y  L  D  H  L  C  Y  S  *  R  W  S  F  S  A  *  S  *  L  V  F  F  L  T  L  L  N  L  D  F  A  C  M  C  S  F  S  Q  L  K  L  G  S  L  D  S  L  W  M  I  A  I  L  F  S  W  E  L  L  I  C  L  I  L  M  C  S  H  L  *  S  S  C  G  R  H  S  Y  L  V  P  V  G  G  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0059P18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="87045" PGL_stop="91123"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87045" e_stop="87282"/>
            <exon e_start="87958" e_stop="88088"/>
            <exon e_start="88634" e_stop="88803"/>
            <exon e_start="89295" e_stop="89372"/>
            <exon e_start="90026" e_stop="90170"/>
            <exon e_start="90606" e_stop="91123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.493" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87045" e_stop="87282" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.789">
            <gDNA_intron_boundary i_start="87283" i_stop="87957" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87958" e_stop="88088" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88089" i_stop="88633" i_length="545"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88634" e_stop="88803" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.493" acc_prob="0.968">
            <gDNA_intron_boundary i_start="88804" i_stop="89294" i_length="491"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89295" e_stop="89372" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90026" e_stop="90170" e_length="145"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="90606" e_stop="91123" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87045" stop="87282"/>
              <exon start="87958" stop="88088"/>
              <exon start="88634" stop="88803"/>
              <exon start="89295" stop="89372"/>
              <exon start="90026" stop="90085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87045" stop="87282"/>
              <exon start="87958" stop="88088"/>
              <exon start="88634" stop="88803"/>
              <exon start="89295" stop="89372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87045" stop="87282"/>
              <exon start="87958" stop="88088"/>
              <exon start="88634" stop="88803"/>
              <exon start="89295" stop="89372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87080" stop="87282"/>
              <exon start="87958" stop="88088"/>
              <exon start="88634" stop="88803"/>
              <exon start="89295" stop="89372"/>
              <exon start="90026" stop="90170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90026" stop="90170"/>
              <exon start="90606" stop="91105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379147" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90039" stop="90170"/>
              <exon start="90606" stop="91123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379587" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTCGAAAATTAAACCCAAAAAAAAAAAAGAAAAGGAAACAAGTCTCCGGCGAAGAAATTCCCAATTCACCCCGTCGGCGTCGAACCTGAATCAGCTTCTCCTTTGAATTCAATCAGTTGATGGACAAAGCAAAATCCCTTGAATTCATCGCTGTCGTATAGAATTCTCTGGTCAAGTTTGACAAGAATCCTAATTCAGAAGCTAAAATTTACAGCCCTTCTTTACAAGCATCTG : TATTAGCTATTATGAATATGAAGAAAAAGCCTCTTAGCTTGGTTAGCTTGTGTCTTGGAGTTATTGGTAGACATTTTGAGGATATCATTGAAGACCTCGCCGAGATAGCTGCTATTCCGTCCACAATGAAG : ATGGCACTTGTGGCAATTGCAAGAAGGAGAAGGTTATTGAATGACGATGTCATTGTTGCATTGGCTGATAGCTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG : TCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG : AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG : CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAATGCCGCCGTCAAAGAGT</gDNA_template>
            <first_frame> L  G  R  K  L  N  P  K  K  K  K  K  R  K  Q  V  S  G  E  E  I  P  N  S  P  R  R  R  R  T  *  I  S  F  S  F  E  F  N  Q  L  M  D  K  A  K  S  L  E  F  I  A  V  V  *  N  S  L  V  K  F  D  K  N  P  N  S  E  A  K  I  Y  S  P  S  L  Q  A  S   : V  L  A  I  M  N  M  K  K  K  P  L  S  L  V  S  L  C  L  G  V  I  G  R  H  F  E  D  I  I  E  D  L  A  E  I  A  A  I  P  S  T  M  K  :  M  A  L  V  A  I  A  R  R  R  R  L  L  N  D  D  V  I  V  A  L  A  D  S  S  W  K  I  L  D  L  S  G  S  D  V  S  D  F  G  L  S  Q  V  V  K  T  C  N  H  L  Q  A  V  D  I  S :   R  C  S  N  L  T  S  A  S  V  S  E  L  L  Q  N  C  R  S  L  E  I  L  R  W  G :   G  C  P  R  S  E  N  T  A  R  R  C  L  R  F  L  K  P  I  L  E  N  V  E  G  D  S  W  E  E  L  D  T  L  E  I  A  H  G  A  T  S  L  R  W  L  L  W  :  P  K  V  E  K  D  Q  L  E  I  L  S  E  E  C  P  R  V  I  V  N  P  K  P  S  P  L  G  Y  R  G  L  D  I  P  R  E  A  R  L  D  V  S  L  D  D  P  I  V  E  D  I  D  P  K  T  W  A  V  S  R  F  V  P  R  A  S  P  S  S  V  S  R  S  E  D  L  P  I  A  E  K  F  R  L  A  F  L  E  R  D  T  R  L  A  P  K  R  A  K  N  A  R  Q  H  Q  R  R  A  E  K  E  W  V  T  M  N  S  R  A  K  A  V  A  L  A  S  L  A  S  K  S  L  N  I  R  N  *  K  *  M  F  Y  L  Y  E  T  R  F  *  S  L  S  V  N  N  T  K  C  F  C  I  Y  S  F  R  Q  C  R  R  Q  R   </first_frame>
            <second_frame>  *  V  E  N  *  T  Q  K  K  K  R  K  G  N  K  S  P  A  K  K  F  P  I  H  P  V  G  V  E  P  E  S  A  S  P  L  N  S  I  S  *  W  T  K  Q  N  P  L  N  S  S  L  S  Y  R  I  L  W  S  S  L  T  R  I  L  I  Q  K  L  K  F  T  A  L  L  Y  K  H  L  :  Y  *  L  L  *  I  *  R  K  S  L  L  A  W  L  A  C  V  L  E  L  L  V  D  I  L  R  I  S  L  K  T  S  P  R  *  L  L  F  R  P  Q  *  R :   W  H  L  W  Q  L  Q  E  G  E  G  Y  *  M  T  M  S  L  L  H  W  L  I  A  P  G  K  Y  W  T  C  L  V  Q  M  F  R  I  L  A  Y  H  K  W  L  K  H  A  T  I  C  K  Q  L  I  *   : V  A  A  A  I  S  H  Q  P  V  Y  Q  N  S  C  R  T  A  G  L  W  K  Y  *  D  G   : E  A  A  L  G  V  R  T  Q  L  V  D  A  S  V  S  *  N  Q  Y  *  R  T  W  K  E  I  L  G  R  N  L  I  P  W  K  *  L  M  V  R  H  P  C  V  G  F  Y  G :   Q  K  L  K  R  T  S  W  R  F  C  L  K  N  A  H  E  S  *  *  I  Q  S  H  R  H  S  V  T  G  G  L  I  Y  L  E  K  Q  D  *  M  F  H  *  M  I  P  L  L  K  I  L  T  P  K  P  G  Q  F  L  D  L  Y  L  E  H  H  H  H  Q  F  Q  D  Q  K  I  C  P  L  R  R  S  L  D  L  H  F  L  R  E  I  L  D  *  H  Q  S  E  Q  R  M  Q  D  N  T  N  D  V  Q  K  R  N  G  *  R  *  I  V  G  Q  K  Q  *  H  L  P  H  W  Q  A  N  P  *  T  S  G  T  E  N  K  C  F  T  Y  T  K  P  V  F  D  L  C  Q  S  T  I  Q  N  A  S  V  Y  T  L  S  G  N  A  A  V  K  E  </second_frame>
            <third_frame>   R  S  K  I  K  P  K  K  K  K  E  K  E  T  S  L  R  R  R  N  S  Q  F  T  P  S  A  S  N  L  N  Q  L  L  L  *  I  Q  S  V  D  G  Q  S  K  I  P  *  I  H  R  C  R  I  E  F  S  G  Q  V  *  Q  E  S  *  F  R  S  *  N  L  Q  P  F  F  T  S  I  C :   I  S  Y  Y  E  Y  E  E  K  A  S  *  L  G  *  L  V  S  W  S  Y  W  *  T  F  *  G  Y  H  *  R  P  R  R  D  S  C  Y  S  V  H  N  E   : D  G  T  C  G  N  C  K  K  E  K  V  I  E  *  R  C  H  C  C  I  G  *  *  L  L  E  N  T  G  L  V  W  F  R  C  F  G  F  W  P  I  T  S  G  *  N  M  Q  P  S  A  S  S  *  Y  K  :  S  L  Q  Q  S  H  I  S  Q  C  I  R  T  L  A  E  L  P  V  S  G  N  I  E  M  G  :  R  L  P  S  E  *  E  H  S  S  *  M  P  P  F  L  E  T  N  T  R  E  R  G  R  R  F  L  G  G  T  *  Y  L  G  N  S  S  W  C  D  I  L  A  L  A  F  M   : A  K  S  *  K  G  P  A  G  D  S  V  *  R  M  P  T  S  H  S  K  S  K  A  I  A  T  R  L  Q  G  A  *  Y  T  *  R  S  K  T  R  C  F  I  R  *  S  H  C  *  R  Y  *  P  Q  N  L  G  S  F  *  I  C  T  *  S  I  T  I  I  S  F  K  I  R  R  F  A  H  C  G  E  V  *  T  C  I  S  *  E  R  Y  *  T  S  T  K  A  S  K  E  C  K  T  T  P  T  T  C  R  K  G  M  G  N  D  E  *  *  G  K  S  S  S  T  C  L  T  G  K  Q  I  L  E  H  P  E  L  K  I  N  V  L  L  I  R  N  P  F  L  I  S  V  S  Q  Q  Y  K  M  L  L  Y  I  L  F  Q  A  M  P  P  S  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87210" stop="87282"/>
                    <exon start="87958" stop="88088"/>
                    <exon start="88634" stop="88803"/>
                    <exon start="89295" stop="89372"/>
                    <exon start="90026" stop="90170"/>
                    <exon start="90606" stop="91019"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLVKFDKNPNSEAKIYSPSLQASVLAIMNMKKKPLSLVSLCLGVIGRHFEDIIEDLAEIAAIPSTMKMALVAIARRRRLLNDDVIVALADSSWKILDLSGSDVSDFGLSQVVKTCNHLQAVDISRCSNLTSASVSELLQNCRSLEILRWGGCPRSENTARRCLRFLKPILENVEGDSWEELDTLEIAHGATSLRWLLWPKVEKDQLEILSEECPRVIVNPKPSPLGYRGLDIPREARLDVSLDDPIVEDIDPKTWAVSRFVPRASPSSVSRSEDLPIAEKFRLAFLERDTRLAPKRAKNARQHQRRAEKEWVTMNSRAKAVALASLASKSLNIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88705" e_stop="88803"/>
            <exon e_start="89202" e_stop="89372"/>
            <exon e_start="90026" e_stop="90170"/>
            <exon e_start="90606" e_stop="91123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.493" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88705" e_stop="88803" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.493" acc_prob="0.906">
            <gDNA_intron_boundary i_start="88804" i_stop="89201" i_length="398"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89202" e_stop="89372" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89373" i_stop="90025" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90026" e_stop="90170" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.955">
            <gDNA_intron_boundary i_start="90171" i_stop="90605" i_length="435"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="90606" e_stop="91123" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88705" stop="88803"/>
              <exon start="89202" stop="89372"/>
              <exon start="90026" stop="90170"/>
              <exon start="90606" stop="91100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90026" stop="90170"/>
              <exon start="90606" stop="91105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379147" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90039" stop="90170"/>
              <exon start="90606" stop="91123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379587" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTGGAAAATACTGGACTTGTCTGGTTCAGATGTTTCGGATTTTGGCCTATCACAAGTGGTTAAAACATGCAACCATCTGCAAGCAGTTGATATAAG : GCCACGCTTTCACCTATTTCAGTCCTTTTTCCGCTGCTCAACTTAAATTTGGTTTTGAAATGTAAACCTAAATATGAACATCCATTGTCACAGTCGCTGCAGCAATCTCACATCAGCCAGTGTATCAGAACTCTTGCAGAACTGCCGGTCTCTGGAAATATTGAGATGGGG : AGGCTGCCCTCGGAGTGAGAACACAGCTCGTAGATGCCTCCGTTTCTTGAAACCAATACTAGAGAACGTGGAAGGAGATTCTTGGGAGGAACTTGATACCTTGGAAATAGCTCATGGTGCGACATCCTTGCGTTGGCTTTTATGG : CCAAAAGTTGAAAAGGACCAGCTGGAGATTCTGTCTGAAGAATGCCCACGAGTCATAGTAAATCCAAAGCCATCGCCACTCGGTTACAGGGGGCTTGATATACCTAGAGAAGCAAGACTAGATGTTTCATTAGATGATCCCATTGTTGAAGATATTGACCCCAAAACCTGGGCAGTTTCTAGATTTGTACCTAGAGCATCACCATCATCAGTTTCAAGATCAGAAGATTTGCCCATTGCGGAGAAGTTTAGACTTGCATTTCTTGAGAGAGATACTAGACTAGCACCAAAGCGAGCAAAGAATGCAAGACAACACCAACGACGTGCAGAAAAGGAATGGGTAACGATGAATAGTAGGGCAAAAGCAGTAGCACTTGCCTCACTGGCAAGCAAATCCTTGAACATCCGGAACTGAAAATAAATGTTTTACTTATACGAAACCCGTTTTTGATCTCTGTCAGTCAACAATACAAAATGCTTCTGTATATACTCTTTCAGGCAATGCCGCCGTCAAAGAGT</gDNA_template>
            <first_frame> L  L  E  N  T  G  L  V  W  F  R  C  F  G  F  W  P  I  T  S  G  *  N  M  Q  P  S  A  S  S  *  Y  K  :  A  T  L  S  P  I  S  V  L  F  P  L  L  N  L  N  L  V  L  K  C  K  P  K  Y  E  H  P  L  S  Q  S  L  Q  Q  S  H  I  S  Q  C  I  R  T  L  A  E  L  P  V  S  G  N  I  E  M  G  :  R  L  P  S  E  *  E  H  S  S  *  M  P  P  F  L  E  T  N  T  R  E  R  G  R  R  F  L  G  G  T  *  Y  L  G  N  S  S  W  C  D  I  L  A  L  A  F  M   : A  K  S  *  K  G  P  A  G  D  S  V  *  R  M  P  T  S  H  S  K  S  K  A  I  A  T  R  L  Q  G  A  *  Y  T  *  R  S  K  T  R  C  F  I  R  *  S  H  C  *  R  Y  *  P  Q  N  L  G  S  F  *  I  C  T  *  S  I  T  I  I  S  F  K  I  R  R  F  A  H  C  G  E  V  *  T  C  I  S  *  E  R  Y  *  T  S  T  K  A  S  K  E  C  K  T  T  P  T  T  C  R  K  G  M  G  N  D  E  *  *  G  K  S  S  S  T  C  L  T  G  K  Q  I  L  E  H  P  E  L  K  I  N  V  L  L  I  R  N  P  F  L  I  S  V  S  Q  Q  Y  K  M  L  L  Y  I  L  F  Q  A  M  P  P  S  K  S </first_frame>
            <second_frame>  S  W  K  I  L  D  L  S  G  S  D  V  S  D  F  G  L  S  Q  V  V  K  T  C  N  H  L  Q  A  V  D  I  R :   P  R  F  H  L  F  Q  S  F  F  R  C  S  T  *  I  W  F  *  N  V  N  L  N  M  N  I  H  C  H  S  R  C  S  N  L  T  S  A  S  V  S  E  L  L  Q  N  C  R  S  L  E  I  L  R  W  G :   G  C  P  R  S  E  N  T  A  R  R  C  L  R  F  L  K  P  I  L  E  N  V  E  G  D  S  W  E  E  L  D  T  L  E  I  A  H  G  A  T  S  L  R  W  L  L  W  :  P  K  V  E  K  D  Q  L  E  I  L  S  E  E  C  P  R  V  I  V  N  P  K  P  S  P  L  G  Y  R  G  L  D  I  P  R  E  A  R  L  D  V  S  L  D  D  P  I  V  E  D  I  D  P  K  T  W  A  V  S  R  F  V  P  R  A  S  P  S  S  V  S  R  S  E  D  L  P  I  A  E  K  F  R  L  A  F  L  E  R  D  T  R  L  A  P  K  R  A  K  N  A  R  Q  H  Q  R  R  A  E  K  E  W  V  T  M  N  S  R  A  K  A  V  A  L  A  S  L  A  S  K  S  L  N  I  R  N  *  K  *  M  F  Y  L  Y  E  T  R  F  *  S  L  S  V  N  N  T  K  C  F  C  I  Y  S  F  R  Q  C  R  R  Q  R   </second_frame>
            <third_frame>   P  G  K  Y  W  T  C  L  V  Q  M  F  R  I  L  A  Y  H  K  W  L  K  H  A  T  I  C  K  Q  L  I  *   : G  H  A  F  T  Y  F  S  P  F  S  A  A  Q  L  K  F  G  F  E  M  *  T  *  I  *  T  S  I  V  T  V  A  A  A  I  S  H  Q  P  V  Y  Q  N  S  C  R  T  A  G  L  W  K  Y  *  D  G   : E  A  A  L  G  V  R  T  Q  L  V  D  A  S  V  S  *  N  Q  Y  *  R  T  W  K  E  I  L  G  R  N  L  I  P  W  K  *  L  M  V  R  H  P  C  V  G  F  Y  G :   Q  K  L  K  R  T  S  W  R  F  C  L  K  N  A  H  E  S  *  *  I  Q  S  H  R  H  S  V  T  G  G  L  I  Y  L  E  K  Q  D  *  M  F  H  *  M  I  P  L  L  K  I  L  T  P  K  P  G  Q  F  L  D  L  Y  L  E  H  H  H  H  Q  F  Q  D  Q  K  I  C  P  L  R  R  S  L  D  L  H  F  L  R  E  I  L  D  *  H  Q  S  E  Q  R  M  Q  D  N  T  N  D  V  Q  K  R  N  G  *  R  *  I  V  G  Q  K  Q  *  H  L  P  H  W  Q  A  N  P  *  T  S  G  T  E  N  K  C  F  T  Y  T  K  P  V  F  D  L  C  Q  S  T  I  Q  N  A  S  V  Y  T  L  S  G  N  A  A  V  K  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89260" stop="89372"/>
                    <exon start="90026" stop="90170"/>
                    <exon start="90606" stop="91019"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVNLNMNIHCHSRCSNLTSASVSELLQNCRSLEILRWGGCPRSENTARRCLRFLKPILENVEGDSWEELDTLEIAHGATSLRWLLWPKVEKDQLEILSEECPRVIVNPKPSPLGYRGLDIPREARLDVSLDDPIVEDIDPKTWAVSRFVPRASPSSVSRSEDLPIAEKFRLAFLERDTRLAPKRAKNARQHQRRAEKEWVTMNSRAKAVALASLASKSLNIRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97337" PGL_stop="92655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97337" e_stop="97200"/>
            <exon e_start="96419" e_stop="96363"/>
            <exon e_start="96175" e_stop="96123"/>
            <exon e_start="95200" e_stop="95149"/>
            <exon e_start="94763" e_stop="94701"/>
            <exon e_start="94601" e_stop="94542"/>
            <exon e_start="93634" e_stop="93592"/>
            <exon e_start="93113" e_stop="92655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.226" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97337" e_stop="97200" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.988">
            <gDNA_intron_boundary i_start="97199" i_stop="96420" i_length="780"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96419" e_stop="96363" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.932">
            <gDNA_intron_boundary i_start="96362" i_stop="96176" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96175" e_stop="96123" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96122" i_stop="95201" i_length="922"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95200" e_stop="95149" e_length="52"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95148" i_stop="94764" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94763" e_stop="94701" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.226">
            <gDNA_intron_boundary i_start="94700" i_stop="94602" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94601" e_stop="94542" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.948" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94541" i_stop="93635" i_length="907"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93634" e_stop="93592" e_length="43"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93591" i_stop="93114" i_length="478"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="93113" e_stop="92655" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97337" stop="97200"/>
              <exon start="96419" stop="96363"/>
              <exon start="96175" stop="96123"/>
              <exon start="95200" stop="95149"/>
              <exon start="94763" stop="94701"/>
              <exon start="94601" stop="94542"/>
              <exon start="93634" stop="93592"/>
              <exon start="93113" stop="92655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATACTGACTGAGATTTTGAAGAATGTCGAAATTGTGGGCGAGGTTTTCAGGTTTATTCAGCAGCAAGAATTTTGTAGGGATTGATAAAGTAGGCAATCGCTATTTTAAAAATATTGAGGAGCTTGATGGTGTCA : TGAAGGAAAAGAGATGGGTGACATTTAAAGGAGAGGAAGATCCAACCTCCATTCCAG : TTGAATGGATATGTTGGTTGAATGGACAGCGGAAGAATGCTCCAACTCCAGAG : GAAATGGCTGAGTTGGAGGCCAGAAGGGAATTTGTTAAGCTTAATATTGCTC : GTCTCAAGAAGGAAGAGGAGGAAAGAATGGCCAAAGAAGGCAAGAGGAAAGCCACAAACATTG : GTAAAGCTGATGGTCCAGATTTAAAAAGTTTCGTTCAACAATTTCCGGATGCTTCAAAAG : GTGATACAAAGGCAGAAGCCTCTGATACACAGCATGAAAAAAG : GTCGTCAGAGCCAACTGGTACCGGTGAATCCTTTAGACCAGGAACATGGCAACCTCCTACCTGAGATCACTCAGACTCAACGGGGAACCTTTAGTTTTCTCTTGATGTTCTATTTCAAGGACATCAGATGACTGCAGAAGTTGAATACAAGGAACTAACGCCACGCAATGTGGCAGTCTCATTCTTTCTCCTCACGGATGTTTGCCCCGAATTATTGTTTCTGTCCTTCCTGTTACTTGTTTCAGGGTCATTTCATTTTTGATAGGACTACACCAACTTTCGGATGATTAATCGTCAATTGTCAAATCTGCACTATGCTCCTTTACCCTTTGATGTACTGTAAAGTTCTGCTATATTGACAATTGATAAGATCTTAACAGAAGAAAAATAACAACATACCCTGTGTAATCCCATAAATTGGGATCTCGGGAGAGTAGAGTGTATCCATATCGTAAAGAG</gDNA_template>
            <first_frame> E  N  T  D  *  D  F  E  E  C  R  N  C  G  R  G  F  Q  V  Y  S  A  A  R  I  L  *  G  L  I  K  *  A  I  A  I  L  K  I  L  R  S  L  M  V  S  :  *  R  K  R  D  G  *  H  L  K  E  R  K  I  Q  P  P  F  Q  :  L  N  G  Y  V  G  *  M  D  S  G  R  M  L  Q  L  Q  R :   K  W  L  S  W  R  P  E  G  N  L  L  S  L  I  L  L  :  V  S  R  R  K  R  R  K  E  W  P  K  K  A  R  G  K  P  Q  T  L  :  V  K  L  M  V  Q  I  *  K  V  S  F  N  N  F  R  M  L  Q  K  :  V  I  Q  R  Q  K  P  L  I  H  S  M  K  K   : G  R  Q  S  Q  L  V  P  V  N  P  L  D  Q  E  H  G  N  L  L  P  E  I  T  Q  T  Q  R  G  T  F  S  F  L  L  M  F  Y  F  K  D  I  R  *  L  Q  K  L  N  T  R  N  *  R  H  A  M  W  Q  S  H  S  F  S  S  R  M  F  A  P  N  Y  C  F  C  P  S  C  Y  L  F  Q  G  H  F  I  F  D  R  T  T  P  T  F  G  *  L  I  V  N  C  Q  I  C  T  M  L  L  Y  P  L  M  Y  C  K  V  L  L  Y  *  Q  L  I  R  S  *  Q  K  K  N  N  N  I  P  C  V  I  P  *  I  G  I  S  G  E  *  S  V  S  I  S  *  R  </first_frame>
            <second_frame>  K  I  L  T  E  I  L  K  N  V  E  I  V  G  E  V  F  R  F  I  Q  Q  Q  E  F  C  R  D  *  *  S  R  Q  S  L  F  *  K  Y  *  G  A  *  W  C  H :   E  G  K  E  M  G  D  I  *  R  R  G  R  S  N  L  H  S  S :   *  M  D  M  L  V  E  W  T  A  E  E  C  S  N  S  R   : G  N  G  *  V  G  G  Q  K  G  I  C  *  A  *  Y  C  S :   S  Q  E  G  R  G  G  K  N  G  Q  R  R  Q  E  E  S  H  K  H  W :   *  S  *  W  S  R  F  K  K  F  R  S  T  I  S  G  C  F  K  R :   *  Y  K  G  R  S  L  *  Y  T  A  *  K  K  :  V  V  R  A  N  W  Y  R  *  I  L  *  T  R  N  M  A  T  S  Y  L  R  S  L  R  L  N  G  E  P  L  V  F  S  *  C  S  I  S  R  T  S  D  D  C  R  S  *  I  Q  G  T  N  A  T  Q  C  G  S  L  I  L  S  P  H  G  C  L  P  R  I  I  V  S  V  L  P  V  T  C  F  R  V  I  S  F  L  I  G  L  H  Q  L  S  D  D  *  S  S  I  V  K  S  A  L  C  S  F  T  L  *  C  T  V  K  F  C  Y  I  D  N  *  *  D  L  N  R  R  K  I  T  T  Y  P  V  *  S  H  K  L  G  S  R  E  S  R  V  Y  P  Y  R  K  E </second_frame>
            <third_frame>   K  Y  *  L  R  F  *  R  M  S  K  L  W  A  R  F  S  G  L  F  S  S  K  N  F  V  G  I  D  K  V  G  N  R  Y  F  K  N  I  E  E  L  D  G  V   : M  K  E  K  R  W  V  T  F  K  G  E  E  D  P  T  S  I  P   : V  E  W  I  C  W  L  N  G  Q  R  K  N  A  P  T  P  E  :  E  M  A  E  L  E  A  R  R  E  F  V  K  L  N  I  A   : R  L  K  K  E  E  E  E  R  M  A  K  E  G  K  R  K  A  T  N  I   : G  K  A  D  G  P  D  L  K  S  F  V  Q  Q  F  P  D  A  S  K   : G  D  T  K  A  E  A  S  D  T  Q  H  E  K  R :   S  S  E  P  T  G  T  G  E  S  F  R  P  G  T  W  Q  P  P  T  *  D  H  S  D  S  T  G  N  L  *  F  S  L  D  V  L  F  Q  G  H  Q  M  T  A  E  V  E  Y  K  E  L  T  P  R  N  V  A  V  S  F  F  L  L  T  D  V  C  P  E  L  L  F  L  S  F  L  L  L  V  S  G  S  F  H  F  *  *  D  Y  T  N  F  R  M  I  N  R  Q  L  S  N  L  H  Y  A  P  L  P  F  D  V  L  *  S  S  A  I  L  T  I  D  K  I  L  T  E  E  K  *  Q  H  T  L  C  N  P  I  N  W  D  L  G  R  V  E  C  I  H  I  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97314" stop="97200"/>
                    <exon start="96419" stop="96363"/>
                    <exon start="96175" stop="96123"/>
                    <exon start="95200" stop="95149"/>
                    <exon start="94763" stop="94701"/>
                    <exon start="94601" stop="94542"/>
                    <exon start="93634" stop="93592"/>
                    <exon start="93113" stop="93050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMSKLWARFSGLFSSKNFVGIDKVGNRYFKNIEELDGVMKEKRWVTFKGEEDPTSIPVEWICWLNGQRKNAPTPEEMAELEARREFVKLNIARLKKEEEERMAKEGKRKATNIGKADGPDLKSFVQQFPDASKGDTKAEASDTQHEKRSSEPTGTGESFRPGTWQPPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="104691" PGL_stop="101679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104691" e_stop="104516"/>
            <exon e_start="103461" e_stop="102793"/>
            <exon e_start="102701" e_stop="102513"/>
            <exon e_start="102427" e_stop="102339"/>
            <exon e_start="102131" e_stop="101679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104691" e_stop="104516" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104515" i_stop="103462" i_length="1054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103461" e_stop="102793" e_length="669"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.891">
            <gDNA_intron_boundary i_start="102792" i_stop="102702" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102701" e_stop="102513" e_length="189"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="102512" i_stop="102428" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102427" e_stop="102339" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="102338" i_stop="102132" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="102131" e_stop="101679" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104691" stop="104516"/>
              <exon start="103461" stop="102846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104683" stop="104516"/>
              <exon start="103461" stop="103116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103377" stop="102793"/>
              <exon start="102701" stop="102535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103048" stop="102793"/>
              <exon start="102701" stop="102513"/>
              <exon start="102427" stop="102339"/>
              <exon start="102131" stop="101808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102956" stop="102793"/>
              <exon start="102701" stop="102513"/>
              <exon start="102427" stop="102339"/>
              <exon start="102131" stop="101679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102527" stop="102513"/>
              <exon start="102427" stop="102339"/>
              <exon start="102131" stop="101744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAATAATGGAGCTCAAATTGAAGATACTACTACTATTATTACTCTCTTTGACATCCATTCCGTTCATCAGCAGAACAGTCCGAGCTGGAGAAGAAGTAGAATATCTCCGACCTCCGCCGCGTAAGGCCTTTCGTTTGCCATGGGATCCACAATCTTCCTCTCAACCTCAACAG : GTTCACATCTCATTAGCTGGAGACAAACACATAAGGGTATCATGGGTGACAACTGATAAATCTTCTCCTTCAATTGTTGAATATGGAACATCCACTGGAAAATATAGTTATAAAGCTCAAGGAGAAAGTACCAAGTACAGTTACCTGTTTTATCGTTCTGGGATGATACATCATACTGTGATAGGACCATTGCAAGACAGCACAGTGTATTTCTACAGATGTGGTGGAGAAGATCCGGAGTTCCAGTTCAAAACTCCACCGTCTAAGTTTCCTGTTACTTTTGCAGTGGCAGGAGATTTAGGCCAAACTGGATGGACGAAGTCAACTTTAGACCATATAGACCAATGTAAATATGATGTTCATTTGCTCCCTGGTGACCTTTCTTATGCTGATTATGTTCAACATAGGTGGGACACATTTGGTCAACTGGTTCAGCCGCTGGCTAGTGCAAGACCATGGATGGTGACTCAAGGGAATCATGAAAAAGAAAACATACCATTCGTTGTGGATGAATTTATATCTTACAACTCCAGGTGGAAGATGCCATTTGAGGAGAGTGGATCTACTTCGAATCTCTACTATTCATTTGACGTTGCTGGGGTTCATACAATCATGCTTGGTTCATATACTGATTACGATGACTACTCTGATCAATATCGATGGCTGAAG : GCTGATCTTCATAAGGTTGATCGCAATAAGACTCCTTGGTTGGTTGTGTTATTCCATGTGCCATGGTATAACAGTAATGAGGCTCATCAAGGTGAAGCTGATGACATGATGGCATCTATTGAGCCTCTGTTATATGCAGCTGGTGCAGATATAGTATTTGCTGGGCATGTTCATGCTTATGAACGCACG : CAACGAGTTTATAATGGTAAACCTGATCCTTGTGGTGCTGTCCACATAACAATTGGTGATGGAGGAAACAAAGAAGGTTTAGCGCGCAA : GTACAAGCTACCCCAACCAGAATGGTCTGTGTTCCGCGAAGCAAGCTTTGGCCATGGTGAACTTGCGATAATTAATTCAACTCATGCCTCTTGGAGCTGGCATAGAAATGATGATGATGAACCAGTGAGGTCTGATCAAGTTTCGATTACCTCGTTGATTGATTCAGGATGCAGCAGCGTTAGAGTCATGAACTAAGAGAAATCCTTGGAAGCTCTTAGCTCTACTTGTAACAGAAACCAACTACTTGTTCTTATTATTAAGTAAATTTAGGAGATATATTGAGTAATGTCTCTTGTTGCTCAAACTCAACAGTCAAAAACTTGAAGATGAGAGCTGTAAGTTGAATACCATGCCATAAAAATGTAACTAATTGTTCTGTAGAAAACATCTATAATTCAGAAGCTTTAGCATGAACGTTTACATGTAACTCAAAAAGTAGTCTATCAACTACA</gDNA_template>
            <first_frame> H  Q  *  W  S  S  N  *  R  Y  Y  Y  Y  Y  Y  S  L  *  H  P  F  R  S  S  A  E  Q  S  E  L  E  K  K  *  N  I  S  D  L  R  R  V  R  P  F  V  C  H  G  I  H  N  L  P  L  N  L  N  R :   F  T  S  H  *  L  E  T  N  T  *  G  Y  H  G  *  Q  L  I  N  L  L  L  Q  L  L  N  M  E  H  P  L  E  N  I  V  I  K  L  K  E  K  V  P  S  T  V  T  C  F  I  V  L  G  *  Y  I  I  L  *  *  D  H  C  K  T  A  Q  C  I  S  T  D  V  V  E  K  I  R  S  S  S  S  K  L  H  R  L  S  F  L  L  L  L  Q  W  Q  E  I  *  A  K  L  D  G  R  S  Q  L  *  T  I  *  T  N  V  N  M  M  F  I  C  S  L  V  T  F  L  M  L  I  M  F  N  I  G  G  T  H  L  V  N  W  F  S  R  W  L  V  Q  D  H  G  W  *  L  K  G  I  M  K  K  K  T  Y  H  S  L  W  M  N  L  Y  L  T  T  P  G  G  R  C  H  L  R  R  V  D  L  L  R  I  S  T  I  H  L  T  L  L  G  F  I  Q  S  C  L  V  H  I  L  I  T  M  T  T  L  I  N  I  D  G  *  R :   L  I  F  I  R  L  I  A  I  R  L  L  G  W  L  C  Y  S  M  C  H  G  I  T  V  M  R  L  I  K  V  K  L  M  T  *  W  H  L  L  S  L  C  Y  M  Q  L  V  Q  I  *  Y  L  L  G  M  F  M  L  M  N  A  R :   N  E  F  I  M  V  N  L  I  L  V  V  L  S  T  *  Q  L  V  M  E  E  T  K  K  V  *  R  A   : S  T  S  Y  P  N  Q  N  G  L  C  S  A  K  Q  A  L  A  M  V  N  L  R  *  L  I  Q  L  M  P  L  G  A  G  I  E  M  M  M  M  N  Q  *  G  L  I  K  F  R  L  P  R  *  L  I  Q  D  A  A  A  L  E  S  *  T  K  R  N  P  W  K  L  L  A  L  L  V  T  E  T  N  Y  L  F  L  L  L  S  K  F  R  R  Y  I  E  *  C  L  L  L  L  K  L  N  S  Q  K  L  E  D  E  S  C  K  L  N  T  M  P  *  K  C  N  *  L  F  C  R  K  H  L  *  F  R  S  F  S  M  N  V  Y  M  *  L  K  K  *  S  I  N  Y  </first_frame>
            <second_frame>  T  N  N  G  A  Q  I  E  D  T  T  T  I  I  T  L  F  D  I  H  S  V  H  Q  Q  N  S  P  S  W  R  R  S  R  I  S  P  T  S  A  A  *  G  L  S  F  A  M  G  S  T  I  F  L  S  T  S  T   : G  S  H  L  I  S  W  R  Q  T  H  K  G  I  M  G  D  N  *  *  I  F  S  F  N  C  *  I  W  N  I  H  W  K  I  *  L  *  S  S  R  R  K  Y  Q  V  Q  L  P  V  L  S  F  W  D  D  T  S  Y  C  D  R  T  I  A  R  Q  H  S  V  F  L  Q  M  W  W  R  R  S  G  V  P  V  Q  N  S  T  V  *  V  S  C  Y  F  C  S  G  R  R  F  R  P  N  W  M  D  E  V  N  F  R  P  Y  R  P  M  *  I  *  C  S  F  A  P  W  *  P  F  L  C  *  L  C  S  T  *  V  G  H  I  W  S  T  G  S  A  A  G  *  C  K  T  M  D  G  D  S  R  E  S  *  K  R  K  H  T  I  R  C  G  *  I  Y  I  L  Q  L  Q  V  E  D  A  I  *  G  E  W  I  Y  F  E  S  L  L  F  I  *  R  C  W  G  S  Y  N  H  A  W  F  I  Y  *  L  R  *  L  L  *  S  I  S  M  A  E   : G  *  S  S  *  G  *  S  Q  *  D  S  L  V  G  C  V  I  P  C  A  M  V  *  Q  *  *  G  S  S  R  *  S  *  *  H  D  G  I  Y  *  A  S  V  I  C  S  W  C  R  Y  S  I  C  W  A  C  S  C  L  *  T  H   : A  T  S  L  *  W  *  T  *  S  L  W  C  C  P  H  N  N  W  *  W  R  K  Q  R  R  F  S  A  Q  :  V  Q  A  T  P  T  R  M  V  C  V  P  R  S  K  L  W  P  W  *  T  C  D  N  *  F  N  S  C  L  L  E  L  A  *  K  *  *  *  *  T  S  E  V  *  S  S  F  D  Y  L  V  D  *  F  R  M  Q  Q  R  *  S  H  E  L  R  E  I  L  G  S  S  *  L  Y  L  *  Q  K  P  T  T  C  S  Y  Y  *  V  N  L  G  D  I  L  S  N  V  S  C  C  S  N  S  T  V  K  N  L  K  M  R  A  V  S  *  I  P  C  H  K  N  V  T  N  C  S  V  E  N  I  Y  N  S  E  A  L  A  *  T  F  T  C  N  S  K  S  S  L  S  T  T </second_frame>
            <third_frame>   P  I  M  E  L  K  L  K  I  L  L  L  L  L  L  S  L  T  S  I  P  F  I  S  R  T  V  R  A  G  E  E  V  E  Y  L  R  P  P  P  R  K  A  F  R  L  P  W  D  P  Q  S  S  S  Q  P  Q  Q  :  V  H  I  S  L  A  G  D  K  H  I  R  V  S  W  V  T  T  D  K  S  S  P  S  I  V  E  Y  G  T  S  T  G  K  Y  S  Y  K  A  Q  G  E  S  T  K  Y  S  Y  L  F  Y  R  S  G  M  I  H  H  T  V  I  G  P  L  Q  D  S  T  V  Y  F  Y  R  C  G  G  E  D  P  E  F  Q  F  K  T  P  P  S  K  F  P  V  T  F  A  V  A  G  D  L  G  Q  T  G  W  T  K  S  T  L  D  H  I  D  Q  C  K  Y  D  V  H  L  L  P  G  D  L  S  Y  A  D  Y  V  Q  H  R  W  D  T  F  G  Q  L  V  Q  P  L  A  S  A  R  P  W  M  V  T  Q  G  N  H  E  K  E  N  I  P  F  V  V  D  E  F  I  S  Y  N  S  R  W  K  M  P  F  E  E  S  G  S  T  S  N  L  Y  Y  S  F  D  V  A  G  V  H  T  I  M  L  G  S  Y  T  D  Y  D  D  Y  S  D  Q  Y  R  W  L  K  :  A  D  L  H  K  V  D  R  N  K  T  P  W  L  V  V  L  F  H  V  P  W  Y  N  S  N  E  A  H  Q  G  E  A  D  D  M  M  A  S  I  E  P  L  L  Y  A  A  G  A  D  I  V  F  A  G  H  V  H  A  Y  E  R  T  :  Q  R  V  Y  N  G  K  P  D  P  C  G  A  V  H  I  T  I  G  D  G  G  N  K  E  G  L  A  R  K :   Y  K  L  P  Q  P  E  W  S  V  F  R  E  A  S  F  G  H  G  E  L  A  I  I  N  S  T  H  A  S  W  S  W  H  R  N  D  D  D  E  P  V  R  S  D  Q  V  S  I  T  S  L  I  D  S  G  C  S  S  V  R  V  M  N  *  E  K  S  L  E  A  L  S  S  T  C  N  R  N  Q  L  L  V  L  I  I  K  *  I  *  E  I  Y  *  V  M  S  L  V  A  Q  T  Q  Q  S  K  T  *  R  *  E  L  *  V  E  Y  H  A  I  K  M  *  L  I  V  L  *  K  T  S  I  I  Q  K  L  *  H  E  R  L  H  V  T  Q  K  V  V  Y  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104689" stop="104516"/>
                    <exon start="103461" stop="102793"/>
                    <exon start="102701" stop="102513"/>
                    <exon start="102427" stop="102339"/>
                    <exon start="102131" stop="101936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1314</number_coding_nucleotides>
                  <number_encoded_amino_acids>438</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIMELKLKILLLLLLSLTSIPFISRTVRAGEEVEYLRPPPRKAFRLPWDPQSSSQPQQVHISLAGDKHIRVSWVTTDKSSPSIVEYGTSTGKYSYKAQGESTKYSYLFYRSGMIHHTVIGPLQDSTVYFYRCGGEDPEFQFKTPPSKFPVTFAVAGDLGQTGWTKSTLDHIDQCKYDVHLLPGDLSYADYVQHRWDTFGQLVQPLASARPWMVTQGNHEKENIPFVVDEFISYNSRWKMPFEESGSTSNLYYSFDVAGVHTIMLGSYTDYDDYSDQYRWLKADLHKVDRNKTPWLVVLFHVPWYNSNEAHQGEADDMMASIEPLLYAAGADIVFAGHVHAYERTQRVYNGKPDPCGAVHITIGDGGNKEGLARKYKLPQPEWSVFREASFGHGELAIINSTHASWSWHRNDDDEPVRSDQVSITSLIDSGCSSVRVMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="109330" PGL_stop="105431"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109330" e_stop="108937"/>
            <exon e_start="108408" e_stop="107943"/>
            <exon e_start="106556" e_stop="106501"/>
            <exon e_start="106425" e_stop="106295"/>
            <exon e_start="106209" e_stop="106113"/>
            <exon e_start="106040" e_stop="105879"/>
            <exon e_start="105767" e_stop="105431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.054" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109330" e_stop="108937" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108408" e_stop="107943" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.949">
            <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106556" e_stop="106501" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106425" e_stop="106295" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.931">
            <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106209" e_stop="106113" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106040" e_stop="105879" e_length="162"/>
          </exon>
          <intron i_serial="6" don_prob="0.054" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105431" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109330" stop="108937"/>
              <exon start="108408" stop="108000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109330" stop="108937"/>
              <exon start="108408" stop="108163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109321" stop="108937"/>
              <exon start="108408" stop="108174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109318" stop="108937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109296" stop="108937"/>
              <exon start="108408" stop="108133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109291" stop="108937"/>
              <exon start="108408" stop="108385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109288" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109288" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109285" stop="108937"/>
              <exon start="108408" stop="108255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109283" stop="108937"/>
              <exon start="108408" stop="108069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109282" stop="108937"/>
              <exon start="108408" stop="108072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109282" stop="108937"/>
              <exon start="108408" stop="108284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108937"/>
              <exon start="108408" stop="108243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108937"/>
              <exon start="108408" stop="108250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109277" stop="108937"/>
              <exon start="108408" stop="108275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109277" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109275" stop="108937"/>
              <exon start="108408" stop="108286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109275" stop="108937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109272" stop="108937"/>
              <exon start="108408" stop="108122"/>
            </gDNA_exon_coordinates>
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          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG : CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG : CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT : ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG : AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG : TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</gDNA_template>
            <first_frame> V  T  V  P  F  F  F  S  L  F  H  T  P  R  V  S  S  *  L  V  R  F  R  L  K  N  D  A  T  K  W  S  C  S  A  S  N  G  T  Y  V  N  G  S  V  S  A  A  S  S  A  D  A  A  A  T  T  M  D  D  A  T  S  A  S  S  T  T  S  I  S  T  F  L  G  S  A  A  T  T  A  I  A  N  Y  V  S  T  V  C  C  D  *  F  *  P  *  L  E  C  *  S  K  *  G  *  V  S  L  D  W  G  L  A  V  L  D  G  *  E  L  S  L  H  L  F  L  S  H  R  R   : A  C  F  C  *  G  H  Q  E  Q  A  K  W  P  V  *  R  L  W  I  P  R  I  Q  E  S  C  G  C  R  N  C  F  T  N  I  *  W  R  L  D  A  K  C  G  T  E  F  P  Y  E  L  G  I  S  W  C  R  *  E  A  R  *  F  T  R  V  H  N  I  C  W  *  F  G  C  *  C  D  G  L  C  A  T  R  D  I  Q  T  R  V  F  I  S  K  R  C  K  S  C  N  R  *  N  Y  W  T  Y  Q  G  I  W  I  C  Q  V  L  *  *  E  *  T  I  A  C  Y  D  *  N  E  W  C  T  L  F  I  *  A  H  E  D  W  P  G  C  K  Q  E  T  N  G  Y  P  P  E  S :   Y  L  P  K  S  S  S  Y  S  R  R  K  *  P  Q  *  Y  N   : Y  I  C  W  W  F  G  S  Q  C  C  R  R  A  F  A  T  S  F  L  P  I  W  *  I  G  S  R  E  D  S  G  W  K  A  L  W  L  C  S  V  W  *  *  :  S  F  C  *  A  G  F  V  K  L  E  W  H  T  I  G  R  T  K  H  S  A  F  L  G  A  *  P  L  *  Q  T   : V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  T  I  S  D  L  Q  Y  S  I  A  F  G  L  L  V  S  S  I  *  *  M  *  C  L  *  L  T  K  Q  R   </first_frame>
            <second_frame>  S  P  F  H  F  F  S  L  S  F  I  P  L  G  F  H  L  S  S  F  D  F  A  *  K  M  M  P  Q  S  G  V  A  Q  P  A  M  A  P  M  S  M  D  Q  Y  Q  Q  Q  A  P  P  T  Q  Q  Q  Q  Q  W  M  M  Q  P  P  Q  A  Q  Q  P  Q  F  Q  P  S  W  G  Q  Q  Q  Q  Q  P  S  Q  T  M  S  Q  Q  Y  V  A  T  N  S  S  P  S  S  N  V  N  P  N  E  V  R  S  L  W  I  G  D  L  Q  Y  W  M  D  E  S  Y  L  S  T  C  F  Y  H  T  G  E  :  L  V  S  A  K  V  I  R  N  K  Q  S  G  Q  S  E  G  Y  G  F  L  E  F  R  S  H  A  A  A  E  T  V  L  Q  T  Y  N  G  A  L  M  P  N  V  E  Q  N  F  R  M  N  W  A  S  L  G  A  G  E  R  R  D  D  S  P  E  Y  T  I  F  V  G  D  L  A  A  D  V  T  D  Y  V  L  Q  E  T  F  K  P  V  Y  S  S  V  K  G  A  K  V  V  T  D  R  I  T  G  R  T  K  G  Y  G  F  V  K  F  S  D  E  S  E  Q  L  R  A  M  T  E  M  N  G  V  L  C  S  S  R  P  M  R  I  G  P  A  A  N  K  K  P  M  G  T  P  Q  K   : A  T  Y  Q  N  P  Q  A  T  Q  G  E  S  D  P  N  N  T  T  :  I  F  V  G  G  L  D  P  S  V  A  E  E  H  L  R  Q  V  F  S  P  Y  G  E  L  V  H  V  K  I  V  A  G  K  R  C  G  F  V  Q  F  G  S  R :   A  S  A  E  Q  A  L  S  S  L  N  G  T  Q  L  G  G  Q  S  I  R  L  S  W  G  R  S  P  S  N  K  Q  :  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L  P  F  L  I  C  S  I  R  L  H  L  V  C  L  *  A  A  S  S  K  C  D  A  Y  N  *  R  N  K  D  </second_frame>
            <third_frame>   H  R  S  I  F  F  L  S  L  S  Y  P  *  G  F  I  L  A  R  S  I  S  P  E  K  *  C  H  K  V  E  L  L  S  Q  Q  W  H  L  C  Q  W  I  S  I  S  S  K  L  R  R  R  S  S  N  N  N  G  *  C  N  L  R  K  L  N  N  L  N  F  N  L  L  G  V  S  S  N  N  S  H  R  K  L  C  L  N  S  M  L  R  L  I  L  A  L  A  R  M  L  I  Q  M  R  L  G  L  F  G  L  G  T  C  S  I  G  W  M  R  V  I  S  P  L  V  S  I  T  P  A  S :   L  F  L  L  R  S  S  G  T  S  K  V  A  S  L  K  V  M  D  S  S  N  S  G  V  M  R  L  Q  K  L  F  Y  K  H  I  M  A  P  *  C  Q  M  W  N  R  I  S  V  *  T  G  H  L  L  V  P  V  R  G  E  M  I  H  P  S  T  Q  Y  L  L  V  I  W  L  L  M  *  R  I  M  C  Y  K  R  H  S  N  P  C  I  H  Q  *  K  V  Q  K  L  *  Q  I  E  L  L  D  V  P  R  D  M  D  L  S  S  S  L  M  R  V  N  N  C  V  L  *  L  K  *  M  V  Y  F  V  H  L  G  P  *  G  L  A  R  L  Q  T  R  N  Q  W  V  P  P  R  K  :  L  P  T  K  I  L  K  L  L  K  A  K  V  T  P  I  I  Q  L :   Y  L  L  V  V  W  I  P  V  L  Q  K  S  I  C  D  K  F  S  P  H  M  V  N  W  F  T  *  R  *  W  L  E  S  A  V  A  L  F  S  L  V  V   : E  L  L  L  S  R  L  C  Q  A  *  M  A  H  N  W  E  D  K  A  F  G  F  L  G  G  V  A  P  L  T  N  S :   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S  Y  H  F  *  F  A  V  F  D  C  I  W  F  A  C  E  Q  H  L  V  N  V  M  L  I  I  D  E  T  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109257" stop="108937"/>
                    <exon start="108408" stop="107943"/>
                    <exon start="106556" stop="106501"/>
                    <exon start="106425" stop="106295"/>
                    <exon start="106209" stop="106113"/>
                    <exon start="106040" stop="105879"/>
                    <exon start="105767" stop="105765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMPQSGVAQPAMAPMSMDQYQQQAPPTQQQQQWMMQPPQAQQPQFQPSWGQQQQQPSQTMSQQYVATNSSPSSNVNPNEVRSLWIGDLQYWMDESYLSTCFYHTGELVSAKVIRNKQSGQSEGYGFLEFRSHAAAETVLQTYNGALMPNVEQNFRMNWASLGAGERRDDSPEYTIFVGDLAADVTDYVLQETFKPVYSSVKGAKVVTDRITGRTKGYGFVKFSDESEQLRAMTEMNGVLCSSRPMRIGPAANKKPMGTPQKATYQNPQATQGESDPNNTTIFVGGLDPSVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGSRASAEQALSSLNGTQLGGQSIRLSWGRSPSNKQSDQAQWGGSAGAGAGAYYGYAQGYEAYGYAPPAQDPNMYYGNYPGYGNYQQPQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109330" e_stop="108937"/>
            <exon e_start="108408" e_stop="107943"/>
            <exon e_start="106556" e_stop="106501"/>
            <exon e_start="106425" e_stop="106295"/>
            <exon e_start="106209" e_stop="106113"/>
            <exon e_start="106040" e_stop="105856"/>
            <exon e_start="105767" e_stop="105431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109330" e_stop="108937" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108936" i_stop="108409" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108408" e_stop="107943" e_length="466"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.949">
            <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106556" e_stop="106501" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106425" e_stop="106295" e_length="131"/>
          </exon>
          <intron i_serial="4" don_prob="0.850" acc_prob="0.931">
            <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106209" e_stop="106113" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106040" e_stop="105856" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.846" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105855" i_stop="105768" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105431" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109330" stop="108937"/>
              <exon start="108408" stop="108000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109330" stop="108937"/>
              <exon start="108408" stop="108163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109321" stop="108937"/>
              <exon start="108408" stop="108174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109318" stop="108937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109296" stop="108937"/>
              <exon start="108408" stop="108133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109291" stop="108937"/>
              <exon start="108408" stop="108385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109288" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109288" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109287" stop="108937"/>
              <exon start="108408" stop="108363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109285" stop="108937"/>
              <exon start="108408" stop="108255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109283" stop="108937"/>
              <exon start="108408" stop="108069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109282" stop="108937"/>
              <exon start="108408" stop="108072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109282" stop="108937"/>
              <exon start="108408" stop="108284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108937"/>
              <exon start="108408" stop="108243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109280" stop="108937"/>
              <exon start="108408" stop="108250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109277" stop="108937"/>
              <exon start="108408" stop="108275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109277" stop="108962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109275" stop="108937"/>
              <exon start="108408" stop="108286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109275" stop="108937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109272" stop="108937"/>
              <exon start="108408" stop="108122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109271" stop="108937"/>
              <exon start="108408" stop="108106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109271" stop="108937"/>
              <exon start="108408" stop="108215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109269" stop="108937"/>
              <exon start="108408" stop="108287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109269" stop="108937"/>
              <exon start="108408" stop="108287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109254" stop="108937"/>
              <exon start="108408" stop="107995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109240" stop="108937"/>
              <exon start="108408" stop="108103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109224" stop="108937"/>
              <exon start="108408" stop="108239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109215" stop="108975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109124" stop="108937"/>
              <exon start="108408" stop="107994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109100" stop="108937"/>
              <exon start="108408" stop="108110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109090" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109067" stop="108937"/>
              <exon start="108408" stop="108024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109004" stop="108937"/>
              <exon start="108408" stop="108018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108970" stop="108937"/>
              <exon start="108408" stop="108012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108965" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108965" stop="108937"/>
              <exon start="108408" stop="108014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108964" stop="108937"/>
              <exon start="108408" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108964" stop="108937"/>
              <exon start="108408" stop="107976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108347" stop="108018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108314" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108284" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108284" stop="107980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108271" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108230" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108187" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108185" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108153" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108100" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107960" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105856"/>
              <exon start="105767" stop="105514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373560" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105999" stop="105856"/>
              <exon start="105767" stop="105514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292116" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105764" stop="105504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222227" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACCGTTCCATTTTTTTTCTCTCTCTTTCATACCCCTAGGGTTTCATCTTAGCTCGTTCGATTTCGCCTGAAAAATGATGCCACAAAGTGGAGTTGCTCAGCCAGCAATGGCACCTATGTCAATGGATCAGTATCAGCAGCAAGCTCCGCCGACGCAGCAGCAACAACAATGGATGATGCAACCTCCGCAAGCTCAACAACCTCAATTTCAACCTTCTTGGGGTCAGCAGCAACAACAGCCATCGCAAACTATGTCTCAACAGTATGTTGCGACTAATTCTAGCCCTAGCTCGAATGTTAATCCAAATGAGGTTAGGTCTCTTTGGATTGGGGACTTGCAGTATTGGATGGATGAGAGTTATCTCTCCACTTGTTTCTATCACACCGGCGAG : CTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG : CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT : ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG : AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG : TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAGGTATGACAAATATGGCCTTGAAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</gDNA_template>
            <first_frame> V  T  V  P  F  F  F  S  L  F  H  T  P  R  V  S  S  *  L  V  R  F  R  L  K  N  D  A  T  K  W  S  C  S  A  S  N  G  T  Y  V  N  G  S  V  S  A  A  S  S  A  D  A  A  A  T  T  M  D  D  A  T  S  A  S  S  T  T  S  I  S  T  F  L  G  S  A  A  T  T  A  I  A  N  Y  V  S  T  V  C  C  D  *  F  *  P  *  L  E  C  *  S  K  *  G  *  V  S  L  D  W  G  L  A  V  L  D  G  *  E  L  S  L  H  L  F  L  S  H  R  R   : A  C  F  C  *  G  H  Q  E  Q  A  K  W  P  V  *  R  L  W  I  P  R  I  Q  E  S  C  G  C  R  N  C  F  T  N  I  *  W  R  L  D  A  K  C  G  T  E  F  P  Y  E  L  G  I  S  W  C  R  *  E  A  R  *  F  T  R  V  H  N  I  C  W  *  F  G  C  *  C  D  G  L  C  A  T  R  D  I  Q  T  R  V  F  I  S  K  R  C  K  S  C  N  R  *  N  Y  W  T  Y  Q  G  I  W  I  C  Q  V  L  *  *  E  *  T  I  A  C  Y  D  *  N  E  W  C  T  L  F  I  *  A  H  E  D  W  P  G  C  K  Q  E  T  N  G  Y  P  P  E  S :   Y  L  P  K  S  S  S  Y  S  R  R  K  *  P  Q  *  Y  N   : Y  I  C  W  W  F  G  S  Q  C  C  R  R  A  F  A  T  S  F  L  P  I  W  *  I  G  S  R  E  D  S  G  W  K  A  L  W  L  C  S  V  W  *  *  :  S  F  C  *  A  G  F  V  K  L  E  W  H  T  I  G  R  T  K  H  S  A  F  L  G  A  *  P  L  *  Q  T   : V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A  G  M  T  N  M  A  L  K  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L  P  F  L  I  C  S  I  R  L  H  L  V  C  L  *  A  A  S  S  K  C  D  A  Y  N  *  R  N  K  D  </first_frame>
            <second_frame>  S  P  F  H  F  F  S  L  S  F  I  P  L  G  F  H  L  S  S  F  D  F  A  *  K  M  M  P  Q  S  G  V  A  Q  P  A  M  A  P  M  S  M  D  Q  Y  Q  Q  Q  A  P  P  T  Q  Q  Q  Q  Q  W  M  M  Q  P  P  Q  A  Q  Q  P  Q  F  Q  P  S  W  G  Q  Q  Q  Q  Q  P  S  Q  T  M  S  Q  Q  Y  V  A  T  N  S  S  P  S  S  N  V  N  P  N  E  V  R  S  L  W  I  G  D  L  Q  Y  W  M  D  E  S  Y  L  S  T  C  F  Y  H  T  G  E  :  L  V  S  A  K  V  I  R  N  K  Q  S  G  Q  S  E  G  Y  G  F  L  E  F  R  S  H  A  A  A  E  T  V  L  Q  T  Y  N  G  A  L  M  P  N  V  E  Q  N  F  R  M  N  W  A  S  L  G  A  G  E  R  R  D  D  S  P  E  Y  T  I  F  V  G  D  L  A  A  D  V  T  D  Y  V  L  Q  E  T  F  K  P  V  Y  S  S  V  K  G  A  K  V  V  T  D  R  I  T  G  R  T  K  G  Y  G  F  V  K  F  S  D  E  S  E  Q  L  R  A  M  T  E  M  N  G  V  L  C  S  S  R  P  M  R  I  G  P  A  A  N  K  K  P  M  G  T  P  Q  K   : A  T  Y  Q  N  P  Q  A  T  Q  G  E  S  D  P  N  N  T  T  :  I  F  V  G  G  L  D  P  S  V  A  E  E  H  L  R  Q  V  F  S  P  Y  G  E  L  V  H  V  K  I  V  A  G  K  R  C  G  F  V  Q  F  G  S  R :   A  S  A  E  Q  A  L  S  S  L  N  G  T  Q  L  G  G  Q  S  I  R  L  S  W  G  R  S  P  S  N  K  Q  :  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  V  *  Q  I  W  P  *  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S  Y  H  F  *  F  A  V  F  D  C  I  W  F  A  C  E  Q  H  L  V  N  V  M  L  I  I  D  E  T  K  M </second_frame>
            <third_frame>   H  R  S  I  F  F  L  S  L  S  Y  P  *  G  F  I  L  A  R  S  I  S  P  E  K  *  C  H  K  V  E  L  L  S  Q  Q  W  H  L  C  Q  W  I  S  I  S  S  K  L  R  R  R  S  S  N  N  N  G  *  C  N  L  R  K  L  N  N  L  N  F  N  L  L  G  V  S  S  N  N  S  H  R  K  L  C  L  N  S  M  L  R  L  I  L  A  L  A  R  M  L  I  Q  M  R  L  G  L  F  G  L  G  T  C  S  I  G  W  M  R  V  I  S  P  L  V  S  I  T  P  A  S :   L  F  L  L  R  S  S  G  T  S  K  V  A  S  L  K  V  M  D  S  S  N  S  G  V  M  R  L  Q  K  L  F  Y  K  H  I  M  A  P  *  C  Q  M  W  N  R  I  S  V  *  T  G  H  L  L  V  P  V  R  G  E  M  I  H  P  S  T  Q  Y  L  L  V  I  W  L  L  M  *  R  I  M  C  Y  K  R  H  S  N  P  C  I  H  Q  *  K  V  Q  K  L  *  Q  I  E  L  L  D  V  P  R  D  M  D  L  S  S  S  L  M  R  V  N  N  C  V  L  *  L  K  *  M  V  Y  F  V  H  L  G  P  *  G  L  A  R  L  Q  T  R  N  Q  W  V  P  P  R  K  :  L  P  T  K  I  L  K  L  L  K  A  K  V  T  P  I  I  Q  L :   Y  L  L  V  V  W  I  P  V  L  Q  K  S  I  C  D  K  F  S  P  H  M  V  N  W  F  T  *  R  *  W  L  E  S  A  V  A  L  F  S  L  V  V   : E  L  L  L  S  R  L  C  Q  A  *  M  A  H  N  W  E  D  K  A  F  G  F  L  G  G  V  A  P  L  T  N  S :   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  R  Y  D  K  Y  G  L  E   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  T  I  S  D  L  Q  Y  S  I  A  F  G  L  L  V  S  S  I  *  *  M  *  C  L  *  L  T  K  Q  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109257" stop="108937"/>
                    <exon start="108408" stop="107943"/>
                    <exon start="106556" stop="106501"/>
                    <exon start="106425" stop="106295"/>
                    <exon start="106209" stop="106113"/>
                    <exon start="106040" stop="105873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMMPQSGVAQPAMAPMSMDQYQQQAPPTQQQQQWMMQPPQAQQPQFQPSWGQQQQQPSQTMSQQYVATNSSPSSNVNPNEVRSLWIGDLQYWMDESYLSTCFYHTGELVSAKVIRNKQSGQSEGYGFLEFRSHAAAETVLQTYNGALMPNVEQNFRMNWASLGAGERRDDSPEYTIFVGDLAADVTDYVLQETFKPVYSSVKGAKVVTDRITGRTKGYGFVKFSDESEQLRAMTEMNGVLCSSRPMRIGPAANKKPMGTPQKATYQNPQATQGESDPNNTTIFVGGLDPSVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGSRASAEQALSSLNGTQLGGQSIRLSWGRSPSNKQSDQAQWGGSAGAGAGAYYGYAQGYEAYGYAPPAQDPNMYYGNYPGYGNYQQPQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="108412" e_stop="107943"/>
            <exon e_start="106556" e_stop="106501"/>
            <exon e_start="106425" e_stop="106295"/>
            <exon e_start="106209" e_stop="106113"/>
            <exon e_start="106040" e_stop="105879"/>
            <exon e_start="105767" e_stop="105431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.949" e_score="0.996"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.054" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="108412" e_stop="107943" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.949">
            <gDNA_intron_boundary i_start="107942" i_stop="106557" i_length="1386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106556" e_stop="106501" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106425" e_stop="106295" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.931">
            <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106209" e_stop="106113" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106040" e_stop="105879" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.054" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105431" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108412" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108347" stop="108018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108314" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108284" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108284" stop="107980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108271" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108230" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108222" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108189" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108187" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108185" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108153" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108135" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555915" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108132" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555726" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108132" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555923" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108129" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108108" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555667" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108107" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108104" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108100" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108069" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554694" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108068" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557028" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108057" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556960" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107997" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556712" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107989" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371461" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107974" stop="107943"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106395" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106387" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106324" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106324" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230656" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105937" stop="105879"/>
              <exon start="105767" stop="105631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105764" stop="105504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222227" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCTTGTTTCTGCTAAGGTCATCAGGAACAAGCAAAGTGGCCAGTCTGAAGGTTATGGATTCCTCGAATTCAGGAGTCATGCGGCTGCAGAAACTGTTTTACAAACATATAATGGCGCCTTGATGCCAAATGTGGAACAGAATTTCCGTATGAACTGGGCATCTCTTGGTGCCGGTGAGAGGCGAGATGATTCACCCGAGTACACAATATTTGTTGGTGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAAACCCGTGTATTCATCAGTAAAAGGTGCAAAAGTTGTAACAGATAGAATTACTGGACGTACCAAGGGATATGGATTTGTCAAGTTCTCTGATGAGAGTGAACAATTGCGTGCTATGACTGAAATGAATGGTGTACTTTGTTCATCTAGGCCCATGAGGATTGGCCCGGCTGCAAACAAGAAACCAATGGGTACCCCCCAGAAAG : CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT : ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG : AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG : TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</gDNA_template>
            <first_frame> A  A  C  F  C  *  G  H  Q  E  Q  A  K  W  P  V  *  R  L  W  I  P  R  I  Q  E  S  C  G  C  R  N  C  F  T  N  I  *  W  R  L  D  A  K  C  G  T  E  F  P  Y  E  L  G  I  S  W  C  R  *  E  A  R  *  F  T  R  V  H  N  I  C  W  *  F  G  C  *  C  D  G  L  C  A  T  R  D  I  Q  T  R  V  F  I  S  K  R  C  K  S  C  N  R  *  N  Y  W  T  Y  Q  G  I  W  I  C  Q  V  L  *  *  E  *  T  I  A  C  Y  D  *  N  E  W  C  T  L  F  I  *  A  H  E  D  W  P  G  C  K  Q  E  T  N  G  Y  P  P  E  S :   Y  L  P  K  S  S  S  Y  S  R  R  K  *  P  Q  *  Y  N   : Y  I  C  W  W  F  G  S  Q  C  C  R  R  A  F  A  T  S  F  L  P  I  W  *  I  G  S  R  E  D  S  G  W  K  A  L  W  L  C  S  V  W  *  *  :  S  F  C  *  A  G  F  V  K  L  E  W  H  T  I  G  R  T  K  H  S  A  F  L  G  A  *  P  L  *  Q  T   : V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  T  I  S  D  L  Q  Y  S  I  A  F  G  L  L  V  S  S  I  *  *  M  *  C  L  *  L  T  K  Q  R   </first_frame>
            <second_frame>  Q  L  V  S  A  K  V  I  R  N  K  Q  S  G  Q  S  E  G  Y  G  F  L  E  F  R  S  H  A  A  A  E  T  V  L  Q  T  Y  N  G  A  L  M  P  N  V  E  Q  N  F  R  M  N  W  A  S  L  G  A  G  E  R  R  D  D  S  P  E  Y  T  I  F  V  G  D  L  A  A  D  V  T  D  Y  V  L  Q  E  T  F  K  P  V  Y  S  S  V  K  G  A  K  V  V  T  D  R  I  T  G  R  T  K  G  Y  G  F  V  K  F  S  D  E  S  E  Q  L  R  A  M  T  E  M  N  G  V  L  C  S  S  R  P  M  R  I  G  P  A  A  N  K  K  P  M  G  T  P  Q  K   : A  T  Y  Q  N  P  Q  A  T  Q  G  E  S  D  P  N  N  T  T  :  I  F  V  G  G  L  D  P  S  V  A  E  E  H  L  R  Q  V  F  S  P  Y  G  E  L  V  H  V  K  I  V  A  G  K  R  C  G  F  V  Q  F  G  S  R :   A  S  A  E  Q  A  L  S  S  L  N  G  T  Q  L  G  G  Q  S  I  R  L  S  W  G  R  S  P  S  N  K  Q  :  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L  P  F  L  I  C  S  I  R  L  H  L  V  C  L  *  A  A  S  S  K  C  D  A  Y  N  *  R  N  K  D  </second_frame>
            <third_frame>   S  L  F  L  L  R  S  S  G  T  S  K  V  A  S  L  K  V  M  D  S  S  N  S  G  V  M  R  L  Q  K  L  F  Y  K  H  I  M  A  P  *  C  Q  M  W  N  R  I  S  V  *  T  G  H  L  L  V  P  V  R  G  E  M  I  H  P  S  T  Q  Y  L  L  V  I  W  L  L  M  *  R  I  M  C  Y  K  R  H  S  N  P  C  I  H  Q  *  K  V  Q  K  L  *  Q  I  E  L  L  D  V  P  R  D  M  D  L  S  S  S  L  M  R  V  N  N  C  V  L  *  L  K  *  M  V  Y  F  V  H  L  G  P  *  G  L  A  R  L  Q  T  R  N  Q  W  V  P  P  R  K  :  L  P  T  K  I  L  K  L  L  K  A  K  V  T  P  I  I  Q  L :   Y  L  L  V  V  W  I  P  V  L  Q  K  S  I  C  D  K  F  S  P  H  M  V  N  W  F  T  *  R  *  W  L  E  S  A  V  A  L  F  S  L  V  V   : E  L  L  L  S  R  L  C  Q  A  *  M  A  H  N  W  E  D  K  A  F  G  F  L  G  G  V  A  P  L  T  N  S :   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S  Y  H  F  *  F  A  V  F  D  C  I  W  F  A  C  E  Q  H  L  V  N  V  M  L  I  I  D  E  T  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108411" stop="107943"/>
                    <exon start="106556" stop="106501"/>
                    <exon start="106425" stop="106295"/>
                    <exon start="106209" stop="106113"/>
                    <exon start="106040" stop="105879"/>
                    <exon start="105767" stop="105765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLVSAKVIRNKQSGQSEGYGFLEFRSHAAAETVLQTYNGALMPNVEQNFRMNWASLGAGERRDDSPEYTIFVGDLAADVTDYVLQETFKPVYSSVKGAKVVTDRITGRTKGYGFVKFSDESEQLRAMTEMNGVLCSSRPMRIGPAANKKPMGTPQKATYQNPQATQGESDPNNTTIFVGGLDPSVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGSRASAEQALSSLNGTQLGGQSIRLSWGRSPSNKQSDQAQWGGSAGAGAGAYYGYAQGYEAYGYAPPAQDPNMYYGNYPGYGNYQQPQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="107587" e_stop="107565"/>
            <exon e_start="106556" e_stop="106501"/>
            <exon e_start="106425" e_stop="106295"/>
            <exon e_start="106209" e_stop="106113"/>
            <exon e_start="106040" e_stop="105879"/>
            <exon e_start="105767" e_stop="105431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.054" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107587" e_stop="107565" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.949">
            <gDNA_intron_boundary i_start="107564" i_stop="106557" i_length="1008"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106556" e_stop="106501" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106500" i_stop="106426" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106425" e_stop="106295" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.850" acc_prob="0.931">
            <gDNA_intron_boundary i_start="106294" i_stop="106210" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106209" e_stop="106113" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="106112" i_stop="106041" i_length="72"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106040" e_stop="105879" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.054" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105431" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107587" stop="107565"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107587" stop="107565"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107587" stop="107565"/>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106556" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106551" stop="106501"/>
              <exon start="106425" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106395" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106387" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106324" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106324" stop="106295"/>
              <exon start="106209" stop="106113"/>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230656" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105937" stop="105879"/>
              <exon start="105767" stop="105631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105764" stop="105504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222227" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGTGCGTGGCCTCATTTTAG : CTACCTACCAAAATCCTCAAGCTACTCAAGGCGAAAGTGACCCCAATAATACAACT : ATATTTGTTGGTGGTTTGGATCCCAGTGTTGCAGAAGAGCATTTGCGACAAGTTTTCTCCCCATATGGTGAATTGGTTCACGTGAAGATAGTGGCTGGAAAGCGCTGTGGCTTTGTTCAGTTTGGTAGTAG : AGCTTCTGCTGAGCAGGCTTTGTCAAGCTTGAATGGCACACAATTGGGAGGACAAAGCATTCGGCTTTCTTGGGGGCGTAGCCCCTCTAACAAACAG : TCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</gDNA_template>
            <first_frame> F  S  A  W  P  H  F  S :   Y  L  P  K  S  S  S  Y  S  R  R  K  *  P  Q  *  Y  N   : Y  I  C  W  W  F  G  S  Q  C  C  R  R  A  F  A  T  S  F  L  P  I  W  *  I  G  S  R  E  D  S  G  W  K  A  L  W  L  C  S  V  W  *  *  :  S  F  C  *  A  G  F  V  K  L  E  W  H  T  I  G  R  T  K  H  S  A  F  L  G  A  *  P  L  *  Q  T   : V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  T  I  S  D  L  Q  Y  S  I  A  F  G  L  L  V  S  S  I  *  *  M  *  C  L  *  L  T  K  Q  R   </first_frame>
            <second_frame>  L  V  R  G  L  I  L   : A  T  Y  Q  N  P  Q  A  T  Q  G  E  S  D  P  N  N  T  T  :  I  F  V  G  G  L  D  P  S  V  A  E  E  H  L  R  Q  V  F  S  P  Y  G  E  L  V  H  V  K  I  V  A  G  K  R  C  G  F  V  Q  F  G  S  R :   A  S  A  E  Q  A  L  S  S  L  N  G  T  Q  L  G  G  Q  S  I  R  L  S  W  G  R  S  P  S  N  K  Q  :  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L  P  F  L  I  C  S  I  R  L  H  L  V  C  L  *  A  A  S  S  K  C  D  A  Y  N  *  R  N  K  D  </second_frame>
            <third_frame>   *  C  V  A  S  F  *  :  L  P  T  K  I  L  K  L  L  K  A  K  V  T  P  I  I  Q  L :   Y  L  L  V  V  W  I  P  V  L  Q  K  S  I  C  D  K  F  S  P  H  M  V  N  W  F  T  *  R  *  W  L  E  S  A  V  A  L  F  S  L  V  V   : E  L  L  L  S  R  L  C  Q  A  *  M  A  H  N  W  E  D  K  A  F  G  F  L  G  G  V  A  P  L  T  N  S :   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S  Y  H  F  *  F  A  V  F  D  C  I  W  F  A  C  E  Q  H  L  V  N  V  M  L  I  I  D  E  T  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107586" stop="107565"/>
                    <exon start="106556" stop="106501"/>
                    <exon start="106425" stop="106295"/>
                    <exon start="106209" stop="106113"/>
                    <exon start="106040" stop="105879"/>
                    <exon start="105767" stop="105765"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVRGLILATYQNPQATQGESDPNNTTIFVGGLDPSVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGSRASAEQALSSLNGTQLGGQSIRLSWGRSPSNKQSDQAQWGGSAGAGAGAYYGYAQGYEAYGYAPPAQDPNMYYGNYPGYGNYQQPQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="106041" e_stop="105879"/>
            <exon e_start="105767" e_stop="105431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.054" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106041" e_stop="105879" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.054" acc_prob="0.819">
            <gDNA_intron_boundary i_start="105878" i_stop="105768" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105767" e_stop="105431" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106041" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106040" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230656" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="105879"/>
              <exon start="105767" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230588" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105937" stop="105879"/>
              <exon start="105767" stop="105631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554833" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105764" stop="105504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230878" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105757" stop="105520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222227" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105736" stop="105431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234330" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCGATCAGGCTCAATGGGGTGGAAGTGCCGGTGCTGGTGCTGGTGCATATTATGGGTATGCCCAAGGATATGAGGCTTATGGATATGCTCCTCCCGCTCAGGACCCTAATATGTATTATGGGAATTACCCAGGATATGGGAATTATCAGCAGCCACAGCAG : TGAAGTTTAATTATTTTCAAGGAGGCTAAGAAGTAGACGACGTTCAAATTTCCAGTGCTTAGGCTGATCTTTCCCGTCGGTGTGACTGGTTGTACAATGAATTTGATAAACTGAGTGATTGTGAGTTTTTGTGGGACATTTTCTTTTCTCCTGTCTGTAACTTGAGTTTGCTATTACACTAACGTGTACCGAAACATTCCAAACTGTACCTTGACCTGTGTGTAGACTCTGTTAAGTTTTTTCTTACCATTTCTGATTTGCAGTATTCGATTGCATTTGGTTTGCTTGTGAGCAGCATCTAGTAAATGTGATGCTTATAATTGACGAAACAAAGATG</gDNA_template>
            <first_frame> V  R  S  G  S  M  G  W  K  C  R  C  W  C  W  C  I  L  W  V  C  P  R  I  *  G  L  W  I  C  S  S  R  S  G  P  *  Y  V  L  W  E  L  P  R  I  W  E  L  S  A  A  T  A   : V  K  F  N  Y  F  Q  G  G  *  E  V  D  D  V  Q  I  S  S  A  *  A  D  L  S  R  R  C  D  W  L  Y  N  E  F  D  K  L  S  D  C  E  F  L  W  D  I  F  F  S  P  V  C  N  L  S  L  L  L  H  *  R  V  P  K  H  S  K  L  Y  L  D  L  C  V  D  S  V  K  F  F  L  T  I  S  D  L  Q  Y  S  I  A  F  G  L  L  V  S  S  I  *  *  M  *  C  L  *  L  T  K  Q  R   </first_frame>
            <second_frame>  S  D  Q  A  Q  W  G  G  S  A  G  A  G  A  G  A  Y  Y  G  Y  A  Q  G  Y  E  A  Y  G  Y  A  P  P  A  Q  D  P  N  M  Y  Y  G  N  Y  P  G  Y  G  N  Y  Q  Q  P  Q  Q  :  *  S  L  I  I  F  K  E  A  K  K  *  T  T  F  K  F  P  V  L  R  L  I  F  P  V  G  V  T  G  C  T  M  N  L  I  N  *  V  I  V  S  F  C  G  T  F  S  F  L  L  S  V  T  *  V  C  Y  Y  T  N  V  Y  R  N  I  P  N  C  T  L  T  C  V  *  T  L  L  S  F  F  L  P  F  L  I  C  S  I  R  L  H  L  V  C  L  *  A  A  S  S  K  C  D  A  Y  N  *  R  N  K  D  </second_frame>
            <third_frame>   P  I  R  L  N  G  V  E  V  P  V  L  V  L  V  H  I  M  G  M  P  K  D  M  R  L  M  D  M  L  L  P  L  R  T  L  I  C  I  M  G  I  T  Q  D  M  G  I  I  S  S  H  S  S :   E  V  *  L  F  S  R  R  L  R  S  R  R  R  S  N  F  Q  C  L  G  *  S  F  P  S  V  *  L  V  V  Q  *  I  *  *  T  E  *  L  *  V  F  V  G  H  F  L  F  S  C  L  *  L  E  F  A  I  T  L  T  C  T  E  T  F  Q  T  V  P  *  P  V  C  R  L  C  *  V  F  S  Y  H  F  *  F  A  V  F  D  C  I  W  F  A  C  E  Q  H  L  V  N  V  M  L  I  I  D  E  T  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0059P18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="114436" PGL_stop="112046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114436" e_stop="113990"/>
            <exon e_start="113588" e_stop="113313"/>
            <exon e_start="112809" e_stop="112486"/>
            <exon e_start="112193" e_stop="112046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.537" acc_prob="0.995" e_score="0.996"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="114436" e_stop="113990" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.537" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113989" i_stop="113589" i_length="401"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113588" e_stop="113313" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="113312" i_stop="112810" i_length="503"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112809" e_stop="112486" e_length="324"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="112485" i_stop="112194" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="112193" e_stop="112046" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114436" stop="113990"/>
              <exon start="113588" stop="113325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114368" stop="113990"/>
              <exon start="113588" stop="113402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114239" stop="113990"/>
              <exon start="113588" stop="113313"/>
              <exon start="112809" stop="112732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113543" stop="113313"/>
              <exon start="112809" stop="112486"/>
              <exon start="112193" stop="112046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTCTCGCCGGCCGTTCATATTTTGCTCACCGGCGGGACACTTCCATCAATAAGCGATTGCAAAAGGTATGGGAAAGCATGCACCTAAGTCACGGAAAGTTAAAATACAGAATCGGTTATCAGAGGTTCATGAAATTGAGCTTCTGGAGGAATGGATAGAATCAGGTAAACCGGAATCCGGTTCAAATCCGTTGTCGCTTGAGCCATTACCACATAAAGCTCCGGTTGGACGTCTTCCGGATGGTTCATTCTCTAGGTATGCTGGTTGTGATAGGTTCAGTCAGTTGCCGGTTTCTAAGAAAACTAAAGATGGGTTAACTCAGTGCAAATACAAAACTATGACCGATATTCAAAGGGCTTCTCTGCCACACTCTCTTTGCGGCCGTGATATTCTTGGTGCGGCGAAAACTGGTTCTGGAAAGACTTTGGCTTTTGTTATTCCG : GTGCTAGAGAAATTGTATAAAGCTCGATGGGGACCAGAGGACGGTGTTGGATGCATCATAATGTCTCCCACAAGGGAGTTAGCAGGTCAACTTTTTGAAGTACTTAAATCTGTTGGGAAACATCAAGGCTTCAGTGCTGGCCTTCTGATTGGTGGCCGCAAAGATGTTGATGCTGAAAAAGAACATGTTAATGGATTGAACATCCTGGTCTGTACTCCTGGTCGGCTTCTTCAGCATATGGATGAGACACCAAATTTTGATTGTTCACAACTTCAG : GTTTTAGTTCTTGATGAAGCAGATCGTATTCTTGATGTGGGGTTTAAGAGGGATCTAAATGCAATCATTTCACAATTGCCTAAGCATAGGCAGACCTTATTGTTTTCAGCAACCCAGACCAAGTCTGTCCAAGATCTGGCAAGGCTCAGCCTGAAAGACCCTGAATATTTGGGTGTACACGAGGAGTCCGATACTGCGACTCCCAACCGCTTACAACAAACAGCAATGCTTGTTCCTCTTGATAAGAAATTTGACATGTTGTGGAGTTTTATAAAGGCACATCTTAACTCAAGGATATTGGTTTTCCTGTCAAGCTGCAAGCAG : GTAAAATTTGTTTTTGAAACTTTCAAAAAACTCCGTCCTGGGATTCCCCTCAAGTGTCTTCATGGAAGGATGAAGCAAGATAGAAGGATGAGAATTTATTCCCAATTTTGTGAACAACGTTCTGTTCTGTTCTCCACTGATGTTGCTT</gDNA_template>
            <first_frame> F  N  S  R  R  P  F  I  F  C  S  P  A  G  H  F  H  Q  *  A  I  A  K  G  M  G  K  H  A  P  K  S  R  K  V  K  I  Q  N  R  L  S  E  V  H  E  I  E  L  L  E  E  W  I  E  S  G  K  P  E  S  G  S  N  P  L  S  L  E  P  L  P  H  K  A  P  V  G  R  L  P  D  G  S  F  S  R  Y  A  G  C  D  R  F  S  Q  L  P  V  S  K  K  T  K  D  G  L  T  Q  C  K  Y  K  T  M  T  D  I  Q  R  A  S  L  P  H  S  L  C  G  R  D  I  L  G  A  A  K  T  G  S  G  K  T  L  A  F  V  I  P  :  V  L  E  K  L  Y  K  A  R  W  G  P  E  D  G  V  G  C  I  I  M  S  P  T  R  E  L  A  G  Q  L  F  E  V  L  K  S  V  G  K  H  Q  G  F  S  A  G  L  L  I  G  G  R  K  D  V  D  A  E  K  E  H  V  N  G  L  N  I  L  V  C  T  P  G  R  L  L  Q  H  M  D  E  T  P  N  F  D  C  S  Q  L  Q  :  V  L  V  L  D  E  A  D  R  I  L  D  V  G  F  K  R  D  L  N  A  I  I  S  Q  L  P  K  H  R  Q  T  L  L  F  S  A  T  Q  T  K  S  V  Q  D  L  A  R  L  S  L  K  D  P  E  Y  L  G  V  H  E  E  S  D  T  A  T  P  N  R  L  Q  Q  T  A  M  L  V  P  L  D  K  K  F  D  M  L  W  S  F  I  K  A  H  L  N  S  R  I  L  V  F  L  S  S  C  K  Q  :  V  K  F  V  F  E  T  F  K  K  L  R  P  G  I  P  L  K  C  L  H  G  R  M  K  Q  D  R  R  M  R  I  Y  S  Q  F  C  E  Q  R  S  V  L  F  S  T  D  V  A  </first_frame>
            <second_frame>  L  I  L  A  G  R  S  Y  F  A  H  R  R  D  T  S  I  N  K  R  L  Q  K  V  W  E  S  M  H  L  S  H  G  K  L  K  Y  R  I  G  Y  Q  R  F  M  K  L  S  F  W  R  N  G  *  N  Q  V  N  R  N  P  V  Q  I  R  C  R  L  S  H  Y  H  I  K  L  R  L  D  V  F  R  M  V  H  S  L  G  M  L  V  V  I  G  S  V  S  C  R  F  L  R  K  L  K  M  G  *  L  S  A  N  T  K  L  *  P  I  F  K  G  L  L  C  H  T  L  F  A  A  V  I  F  L  V  R  R  K  L  V  L  E  R  L  W  L  L  L  F  R :   C  *  R  N  C  I  K  L  D  G  D  Q  R  T  V  L  D  A  S  *  C  L  P  Q  G  S  *  Q  V  N  F  L  K  Y  L  N  L  L  G  N  I  K  A  S  V  L  A  F  *  L  V  A  A  K  M  L  M  L  K  K  N  M  L  M  D  *  T  S  W  S  V  L  L  V  G  F  F  S  I  W  M  R  H  Q  I  L  I  V  H  N  F  R :   F  *  F  L  M  K  Q  I  V  F  L  M  W  G  L  R  G  I  *  M  Q  S  F  H  N  C  L  S  I  G  R  P  Y  C  F  Q  Q  P  R  P  S  L  S  K  I  W  Q  G  S  A  *  K  T  L  N  I  W  V  Y  T  R  S  P  I  L  R  L  P  T  A  Y  N  K  Q  Q  C  L  F  L  L  I  R  N  L  T  C  C  G  V  L  *  R  H  I  L  T  Q  G  Y  W  F  S  C  Q  A  A  S  R :   *  N  L  F  L  K  L  S  K  N  S  V  L  G  F  P  S  S  V  F  M  E  G  *  S  K  I  E  G  *  E  F  I  P  N  F  V  N  N  V  L  F  C  S  P  L  M  L  L </second_frame>
            <third_frame>   *  F  S  P  A  V  H  I  L  L  T  G  G  T  L  P  S  I  S  D  C  K  R  Y  G  K  A  C  T  *  V  T  E  S  *  N  T  E  S  V  I  R  G  S  *  N  *  A  S  G  G  M  D  R  I  R  *  T  G  I  R  F  K  S  V  V  A  *  A  I  T  T  *  S  S  G  W  T  S  S  G  W  F  I  L  *  V  C  W  L  *  *  V  Q  S  V  A  G  F  *  E  N  *  R  W  V  N  S  V  Q  I  Q  N  Y  D  R  Y  S  K  G  F  S  A  T  L  S  L  R  P  *  Y  S  W  C  G  E  N  W  F  W  K  D  F  G  F  C  Y  S   : G  A  R  E  I  V  *  S  S  M  G  T  R  G  R  C  W  M  H  H  N  V  S  H  K  G  V  S  R  S  T  F  *  S  T  *  I  C  W  E  T  S  R  L  Q  C  W  P  S  D  W  W  P  Q  R  C  *  C  *  K  R  T  C  *  W  I  E  H  P  G  L  Y  S  W  S  A  S  S  A  Y  G  *  D  T  K  F  *  L  F  T  T  S   : G  F  S  S  *  *  S  R  S  Y  S  *  C  G  V  *  E  G  S  K  C  N  H  F  T  I  A  *  A  *  A  D  L  I  V  F  S  N  P  D  Q  V  C  P  R  S  G  K  A  Q  P  E  R  P  *  I  F  G  C  T  R  G  V  R  Y  C  D  S  Q  P  L  T  T  N  S  N  A  C  S  S  *  *  E  I  *  H  V  V  E  F  Y  K  G  T  S  *  L  K  D  I  G  F  P  V  K  L  Q  A   : G  K  I  C  F  *  N  F  Q  K  T  P  S  W  D  S  P  Q  V  S  S  W  K  D  E  A  R  *  K  D  E  N  L  F  P  I  L  *  T  T  F  C  S  V  L  H  *  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114379" stop="113990"/>
                    <exon start="113588" stop="113313"/>
                    <exon start="112809" stop="112486"/>
                    <exon start="112193" stop="112047"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIAKGMGKHAPKSRKVKIQNRLSEVHEIELLEEWIESGKPESGSNPLSLEPLPHKAPVGRLPDGSFSRYAGCDRFSQLPVSKKTKDGLTQCKYKTMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEKLYKARWGPEDGVGCIIMSPTRELAGQLFEVLKSVGKHQGFSAGLLIGGRKDVDAEKEHVNGLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKRDLNAIISQLPKHRQTLLFSATQTKSVQDLARLSLKDPEYLGVHEESDTATPNRLQQTAMLVPLDKKFDMLWSFIKAHLNSRILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDRRMRIYSQFCEQRSVLFSTDVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="131507" PGL_stop="128211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131507" e_stop="130780"/>
            <exon e_start="130688" e_stop="130298"/>
            <exon e_start="128652" e_stop="128636"/>
            <exon e_start="128495" e_stop="128422"/>
            <exon e_start="128245" e_stop="128211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.595" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.588"/>
          <exon-intron don_prob="0.969" acc_prob="0.425" e_score="0.473"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="131507" e_stop="130780" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130688" e_stop="130298" e_length="391"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.595">
            <gDNA_intron_boundary i_start="130297" i_stop="128653" i_length="1645"/>
          </intron>
          <exon e_serial="3" e_score="0.588">
            <gDNA_exon_boundary e_start="128652" e_stop="128636" e_length="17"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="128635" i_stop="128496" i_length="140"/>
          </intron>
          <exon e_serial="4" e_score="0.473">
            <gDNA_exon_boundary e_start="128495" e_stop="128422" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.425">
            <gDNA_intron_boundary i_start="128421" i_stop="128246" i_length="176"/>
          </intron>
          <exon e_serial="5" e_score="0.400">
            <gDNA_exon_boundary e_start="128245" e_stop="128211" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131507" stop="130780"/>
              <exon start="130688" stop="130543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131378" stop="130780"/>
              <exon start="130688" stop="130647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131377" stop="130780"/>
              <exon start="130688" stop="130572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131377" stop="131150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131188" stop="130780"/>
              <exon start="130688" stop="130380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131130" stop="130780"/>
              <exon start="130688" stop="130364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550536" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131089" stop="130780"/>
              <exon start="130688" stop="130320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369118" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131070" stop="130780"/>
              <exon start="130688" stop="130370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130780"/>
              <exon start="130688" stop="130298"/>
              <exon start="128652" stop="128636"/>
              <exon start="128495" stop="128422"/>
              <exon start="128245" stop="128211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCATAAGAAATGAGGTTCGTCCTCCGGCTGTAAACCAGCTTCAGGCGTATGGCCCTAGGGCTGAGCGCAATGGATCAGTTAAGCTTGGATCTAGGTCCTCAAAAAGCAAACAGGTAATAATGCATCCCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG : GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGC : TTCAAAACGGAAAATCC : AAGATCGAAAACTTTAGAAAAGAATCATGCTGCCAGACATTGAGAAGAAACGAAAAAGGAATCTCAATAGGCAG : TGCTTGTGGTGCTGTACTTCCTGCAGCAAGGGATG</gDNA_template>
            <first_frame> C  S  *  E  M  R  F  V  L  R  L  *  T  S  F  R  R  M  A  L  G  L  S  A  M  D  Q  L  S  L  D  L  G  P  Q  K  A  N  R  *  *  C  I  P  Q  S  L  Q  W  V  S  E  A  Q  *  F  L  L  C  Y  N  L  S  I  *  Q  M  D  *  H  L  V  K  A  L  H  P  K  L  Q  T  G  S  L  *  G  R  K  M  F  R  W  L  S  H  W  L  C  C  H  L  M  D  Q  *  P  L  D  S  Y  H  Q  N  Q  L  V  K  Y  L  L  H  K  L  K  L  A  T  K  *  Q  *  V  L  G  R  M  K  A  I  L  A  R  E  E  K  L  S  K  R  K  R  R  S  Q  L  H  Q  P  T  *  Q  Y  L  L  Q  W  P  T  C  L  K  D  L  G  W  Q  K  K  I  L  E  T  M  R  P  L  T  S  C  Q  L  N  I  H  L  *  Y  P  N  *  I  L  *  I  R  F  P  Q  Q  N  Q  V  N  Q  Q  S  P  L  F  L  P  R  L  H  L  F  L  S  C  *  *  T  M  V  L  A  G  *  P  N  F  Y  R :   L  C  R  K  I  *  R  R  T  S  C  F  V  L  E  N  Q  D  L  V  *  *  R  L  Q  Q  L  M  A  V  W  R  R  L  A  F  S  S  I  A  G  T  S  A  Y  S  H  L  *  N  S  H  P  V  D  S  G  R  L  Y  S  Q  *  *  Y  *  C  L  K  I  A  P  G  W  H  *  P  N  L  E  K  L  I  F  I  C  L  S  V  Q  I  K  I  L  H  R  R  K  R  L  W  K  L  F  I  T  V  D  Y  T  F  R  S  Y  I  C  F  A  I  V  L  L  M  S  A  M  Q  S  Y  C  :  F  K  T  E  N  P :   R  S  K  T  L  E  K  N  H  A  A  R  H  *  E  E  T  K  K  E  S  Q  *  A   : V  L  V  V  L  Y  F  L  Q  Q  G  M </first_frame>
            <second_frame>  A  H  K  K  *  G  S  S  S  G  C  K  P  A  S  G  V  W  P  *  G  *  A  Q  W  I  S  *  A  W  I  *  V  L  K  K  Q  T  G  N  N  A  S  L  S  P  S  S  G  C  Q  R  H  S  S  S  C  C  A  T  T  C  Q  F  N  K  W  T  S  I  *  S  K  L  C  I  P  S  F  K  Q  G  V  Y  K  G  E  R  C  S  D  G  *  A  I  G  Y  A  A  T  *  W  T  S  N  P  W  T  A  T  T  R  T  N  S  *  N  T  C  F  T  S  S  S  W  Q  Q  S  S  N  R  Y  W  A  E  *  R  L  S  *  Q  G  R  R  S  C  Q  R  G  K  G  A  A  S  C  I  N  Q  H  S  N  T  C  C  S  G  L  R  V  S  R  I  W  A  G  K  R  R  Y  W  K  Q  *  G  L  *  Q  V  A  S  *  T  F  T  C  D  T  Q  T  R  Y  C  E  S  G  S  L  S  K  T  K  *  T  S  N  P  H  S  S  Y  P  G  Y  I  C  S  *  A  A  D  E  L  W  Y  W  Q  D  D  R  T  S  T   : G  C  A  G  K  S  E  G  E  P  A  A  S  Y  W  R  I  R  T  W  C  D  E  D  S  S  N  *  W  Q  Y  G  G  D  *  H  S  V  A  *  Q  E  H  P  H  I  L  I  S  E  T  H  I  P  *  T  L  A  D  C  I  V  N  S  D  T  N  V  S  K  *  L  L  V  G  I  S  Q  T  L  R  S  L  S  L  Y  V  Y  Q  F  R  L  K  S  C  I  D  V  N  V  Y  G  N  C  L  *  R  W  I  I  L  S  V  L  I  S  A  L  Q  S  Y  C  S  C  L  L  C  S  R  I  A :   S  K  R  K  I   : Q  D  R  K  L  *  K  R  I  M  L  P  D  I  E  K  K  R  K  R  N  L  N  R  Q  :  C  L  W  C  C  T  S  C  S  K  G   </second_frame>
            <third_frame>   L  I  R  N  E  V  R  P  P  A  V  N  Q  L  Q  A  Y  G  P  R  A  E  R  N  G  S  V  K  L  G  S  R  S  S  K  S  K  Q  V  I  M  H  P  S  V  P  P  V  G  V  R  G  T  V  V  P  V  V  L  Q  P  V  N  L  T  N  G  L  A  S  S  Q  S  S  A  S  Q  A  S  N  R  E  S  I  R  E  K  D  V  Q  M  V  K  P  L  A  M  L  P  P  D  G  P  V  T  P  G  Q  L  P  P  E  P  T  R  E  I  L  A  S  Q  A  Q  V  G  N  K  V  A  I  G  T  G  Q  N  E  G  Y  L  S  K  G  G  E  A  V  K  E  E  K  A  Q  P  A  A  S  T  N  I  A  I  P  V  A  V  A  Y  V  S  Q  G  S  G  L  A  K  E  D  T  G  N  N  E  A  S  N  K  L  P  A  E  H  S  P  V  I  P  K  L  D  T  V  N  Q  V  P  S  A  K  P  S  E  P  A  I  P  T  L  P  T  Q  A  T  S  V  P  K  L  L  M  N  Y  G  T  G  R  M  T  E  L  L  Q  :  A  V  Q  E  N  L  K  E  N  Q  L  L  R  T  G  E  S  G  L  G  V  M  K  T  P  A  T  D  G  S  M  E  E  T  S  I  Q  *  H  S  R  N  I  R  I  F  S  S  L  K  L  T  S  R  R  L  W  Q  T  V  *  S  I  V  I  L  M  S  Q  N  S  S  W  L  A  L  A  K  P  *  E  A  Y  L  Y  M  F  I  S  S  D  *  N  L  A  *  T  *  T  F  M  E  T  V  Y  N  G  G  L  Y  F  P  F  L  Y  L  L  C  N  R  I  A  H  V  C  Y  A  V  V  L   : L  Q  N  G  K  S  :  K  I  E  N  F  R  K  E  S  C  C  Q  T  L  R  R  N  E  K  G  I  S  I  G  S :   A  C  G  A  V  L  P  A  A  R  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131505" stop="130780"/>
                    <exon start="130688" stop="130575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRNEVRPPAVNQLQAYGPRAERNGSVKLGSRSSKSKQVIMHPSVPPVGVRGTVVPVVLQPVNLTNGLASSQSSASQASNRESIREKDVQMVKPLAMLPPDGPVTPGQLPPEPTREILASQAQVGNKVAIGTGQNEGYLSKGGEAVKEEKAQPAASTNIAIPVAVAYVSQGSGLAKEDTGNNEASNKLPAEHSPVIPKLDTVNQVPSAKPSEPAIPTLPTQATSVPKLLMNYGTGRMTELLQAVQENLKENQLLRTGESGLGVMKTPATDGSMEETSIQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130394" stop="130298"/>
                    <exon start="128652" stop="128636"/>
                    <exon start="128495" stop="128422"/>
                    <exon start="128245" stop="128212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFMETVYNGGLYFPFLYLLCNRIAHVCYAVVLLQNGKSKIENFRKESCCQTLRRNEKGISIGSACGAVLPAARD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="131507" e_stop="130780"/>
            <exon e_start="130688" e_stop="130296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="131507" e_stop="130780" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="130779" i_stop="130689" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="130688" e_stop="130296" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131507" stop="130780"/>
              <exon start="130688" stop="130543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131378" stop="130780"/>
              <exon start="130688" stop="130647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131377" stop="130780"/>
              <exon start="130688" stop="130572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131377" stop="131150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131188" stop="130780"/>
              <exon start="130688" stop="130380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131130" stop="130780"/>
              <exon start="130688" stop="130364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550536" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131089" stop="130780"/>
              <exon start="130688" stop="130320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369118" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131070" stop="130780"/>
              <exon start="130688" stop="130370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131013" stop="130780"/>
              <exon start="130688" stop="130296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCATAAGAAATGAGGTTCGTCCTCCGGCTGTAAACCAGCTTCAGGCGTATGGCCCTAGGGCTGAGCGCAATGGATCAGTTAAGCTTGGATCTAGGTCCTCAAAAAGCAAACAGGTAATAATGCATCCCTCAGTCCCTCCAGTGGGTGTCAGAGGCACAGTAGTTCCTGTTGTGCTACAACCTGTCAATTTAACAAATGGACTAGCATCTAGTCAAAGCTCTGCATCCCAAGCTTCAAACAGGGAGTCTATAAGGGAGAAAGATGTTCAGATGGTTAAGCCATTGGCTATGCTGCCACCTGATGGACCAGTAACCCCTGGACAGCTACCACCAGAACCAACTCGTGAAATACTTGCTTCACAAGCTCAAGTTGGCAACAAAGTAGCAATAGGTACTGGGCAGAATGAAGGCTATCTTAGCAAGGGAGGAGAAGCTGTCAAAGAGGAAAAGGCGCAGCCAGCTGCATCAACCAACATAGCAATACCTGTTGCAGTGGCCTACGTGTCTCAAGGATCTGGGCTGGCAAAAGAAGATACTGGAAACAATGAGGCCTCTAACAAGTTGCCAGCTGAACATTCACCTGTGATACCCAAACTAGATACTGTGAATCAGGTTCCCTCAGCAAAACCAAGTGAACCAGCAATCCCCACTCTTCCTACCCAGGCTACATCTGTTCCTAAGCTGCTGATGAACTATGGTACTGGCAGGATGACCGAACTTCTACAG : GCTGTGCAGGAAAATCTGAAGGAGAACCAGCTGCTTCGTACTGGAGAATCAGGACTTGGTGTGATGAAGACTCCAGCAACTGATGGCAGTATGGAGGAGACTAGCATTCAGTAGCATAGCAGGAACATCCGCATATTCTCATCTCTGAAACTCACATCCCGTAGACTCTGGCAGACTGTATAGTCAATAGTGATACTAATGTCTCAAAATAGCTCCTGGTTGGCATTAGCCAAACCTTGAGAAGCTTATCTTTATATGTTTATCAGTTCAGATTAAAATCTTGCATAGACGTAAACGTTTATGGAAACTGTTTATAACGGTGGATTATACTTTCCGTTCTTATATCTGCTTTGCAATCGTATTGCTCATGTCTGCTATGCAGTCGTATTGCTT</gDNA_template>
            <first_frame> C  S  *  E  M  R  F  V  L  R  L  *  T  S  F  R  R  M  A  L  G  L  S  A  M  D  Q  L  S  L  D  L  G  P  Q  K  A  N  R  *  *  C  I  P  Q  S  L  Q  W  V  S  E  A  Q  *  F  L  L  C  Y  N  L  S  I  *  Q  M  D  *  H  L  V  K  A  L  H  P  K  L  Q  T  G  S  L  *  G  R  K  M  F  R  W  L  S  H  W  L  C  C  H  L  M  D  Q  *  P  L  D  S  Y  H  Q  N  Q  L  V  K  Y  L  L  H  K  L  K  L  A  T  K  *  Q  *  V  L  G  R  M  K  A  I  L  A  R  E  E  K  L  S  K  R  K  R  R  S  Q  L  H  Q  P  T  *  Q  Y  L  L  Q  W  P  T  C  L  K  D  L  G  W  Q  K  K  I  L  E  T  M  R  P  L  T  S  C  Q  L  N  I  H  L  *  Y  P  N  *  I  L  *  I  R  F  P  Q  Q  N  Q  V  N  Q  Q  S  P  L  F  L  P  R  L  H  L  F  L  S  C  *  *  T  M  V  L  A  G  *  P  N  F  Y  R :   L  C  R  K  I  *  R  R  T  S  C  F  V  L  E  N  Q  D  L  V  *  *  R  L  Q  Q  L  M  A  V  W  R  R  L  A  F  S  S  I  A  G  T  S  A  Y  S  H  L  *  N  S  H  P  V  D  S  G  R  L  Y  S  Q  *  *  Y  *  C  L  K  I  A  P  G  W  H  *  P  N  L  E  K  L  I  F  I  C  L  S  V  Q  I  K  I  L  H  R  R  K  R  L  W  K  L  F  I  T  V  D  Y  T  F  R  S  Y  I  C  F  A  I  V  L  L  M  S  A  M  Q  S  Y  C   </first_frame>
            <second_frame>  A  H  K  K  *  G  S  S  S  G  C  K  P  A  S  G  V  W  P  *  G  *  A  Q  W  I  S  *  A  W  I  *  V  L  K  K  Q  T  G  N  N  A  S  L  S  P  S  S  G  C  Q  R  H  S  S  S  C  C  A  T  T  C  Q  F  N  K  W  T  S  I  *  S  K  L  C  I  P  S  F  K  Q  G  V  Y  K  G  E  R  C  S  D  G  *  A  I  G  Y  A  A  T  *  W  T  S  N  P  W  T  A  T  T  R  T  N  S  *  N  T  C  F  T  S  S  S  W  Q  Q  S  S  N  R  Y  W  A  E  *  R  L  S  *  Q  G  R  R  S  C  Q  R  G  K  G  A  A  S  C  I  N  Q  H  S  N  T  C  C  S  G  L  R  V  S  R  I  W  A  G  K  R  R  Y  W  K  Q  *  G  L  *  Q  V  A  S  *  T  F  T  C  D  T  Q  T  R  Y  C  E  S  G  S  L  S  K  T  K  *  T  S  N  P  H  S  S  Y  P  G  Y  I  C  S  *  A  A  D  E  L  W  Y  W  Q  D  D  R  T  S  T   : G  C  A  G  K  S  E  G  E  P  A  A  S  Y  W  R  I  R  T  W  C  D  E  D  S  S  N  *  W  Q  Y  G  G  D  *  H  S  V  A  *  Q  E  H  P  H  I  L  I  S  E  T  H  I  P  *  T  L  A  D  C  I  V  N  S  D  T  N  V  S  K  *  L  L  V  G  I  S  Q  T  L  R  S  L  S  L  Y  V  Y  Q  F  R  L  K  S  C  I  D  V  N  V  Y  G  N  C  L  *  R  W  I  I  L  S  V  L  I  S  A  L  Q  S  Y  C  S  C  L  L  C  S  R  I  A  </second_frame>
            <third_frame>   L  I  R  N  E  V  R  P  P  A  V  N  Q  L  Q  A  Y  G  P  R  A  E  R  N  G  S  V  K  L  G  S  R  S  S  K  S  K  Q  V  I  M  H  P  S  V  P  P  V  G  V  R  G  T  V  V  P  V  V  L  Q  P  V  N  L  T  N  G  L  A  S  S  Q  S  S  A  S  Q  A  S  N  R  E  S  I  R  E  K  D  V  Q  M  V  K  P  L  A  M  L  P  P  D  G  P  V  T  P  G  Q  L  P  P  E  P  T  R  E  I  L  A  S  Q  A  Q  V  G  N  K  V  A  I  G  T  G  Q  N  E  G  Y  L  S  K  G  G  E  A  V  K  E  E  K  A  Q  P  A  A  S  T  N  I  A  I  P  V  A  V  A  Y  V  S  Q  G  S  G  L  A  K  E  D  T  G  N  N  E  A  S  N  K  L  P  A  E  H  S  P  V  I  P  K  L  D  T  V  N  Q  V  P  S  A  K  P  S  E  P  A  I  P  T  L  P  T  Q  A  T  S  V  P  K  L  L  M  N  Y  G  T  G  R  M  T  E  L  L  Q  :  A  V  Q  E  N  L  K  E  N  Q  L  L  R  T  G  E  S  G  L  G  V  M  K  T  P  A  T  D  G  S  M  E  E  T  S  I  Q  *  H  S  R  N  I  R  I  F  S  S  L  K  L  T  S  R  R  L  W  Q  T  V  *  S  I  V  I  L  M  S  Q  N  S  S  W  L  A  L  A  K  P  *  E  A  Y  L  Y  M  F  I  S  S  D  *  N  L  A  *  T  *  T  F  M  E  T  V  Y  N  G  G  L  Y  F  P  F  L  Y  L  L  C  N  R  I  A  H  V  C  Y  A  V  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0059P18.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131505" stop="130780"/>
                    <exon start="130688" stop="130575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRNEVRPPAVNQLQAYGPRAERNGSVKLGSRSSKSKQVIMHPSVPPVGVRGTVVPVVLQPVNLTNGLASSQSSASQASNRESIREKDVQMVKPLAMLPPDGPVTPGQLPPEPTREILASQAQVGNKVAIGTGQNEGYLSKGGEAVKEEKAQPAASTNIAIPVAVAYVSQGSGLAKEDTGNNEASNKLPAEHSPVIPKLDTVNQVPSAKPSEPAIPTLPTQATSVPKLLMNYGTGRMTELLQAVQENLKENQLLRTGESGLGVMKTPATDGSMEETSIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 347 chains have been computed
$ 
$ memory statistics:
$ 1683160 bytes spliced alignments in total
$ 313 spliced alignments have been stored
$ 5377 bytes was the average size of a spliced alignment
$ 34376 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 2148 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 417 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-07 02:30:29
-->
