<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 07:40:32"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E302834" ref_strand="+" ref_description="SGN-E302834 [cLEY-2-G15]">
      <seq>gtaaagttacaattggagacttaccgcctttgatggcgaaactaaaggctttcaatgagatgtttaatgaggaagagatccggaatatcttggctgaatcaggttcagatgtgaatgatgagattgatttcgaaagcttccttaaaacatacttgaatctacaagctcgagctgccccaaaagtaggcagttctaaaagttcgtcgtccttcctgaaggcttccacaactacactccttcacacgatcagtgaatcagagaaatcatcttatgttgctcatataaacagctatttaagagatgatccattcttaaagcaatttcttccaatagatccagcttcaaatgctttgtttgatttggcaaaggatggagttcttttatgtaagctgatcaatgtagctgtacctggcacaatagacgagcgggctattaacatgaaacgagtaattaatccatgggagagaaatgagaatcacaccctttgcctcaattctgcaaaggctattggctgcactgttgtcaatattggcactcaggacctggttgaaggacgacctcacctagtacttgggcttatttctcaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="342" stop="1810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="642" g_stop="787" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="788" i_stop="1014" i_length="227">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1015" g_stop="1253" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="385" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1254" i_stop="1338" i_length="85">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1339" g_stop="1510" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="557" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1511" i_stop="1597" i_length="87">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.487" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1598" g_stop="1631" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="591" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E302834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="642" e_stop="787"/>
          <exon e_start="1015" e_stop="1253"/>
          <exon e_start="1339" e_stop="1510"/>
          <exon e_start="1598" e_stop="1631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTTACAATTGGAGACTTACCGCCTTTGATGGCGAAACTAAAGGCTTTCAATGAGATGTTTAATGAGGAAGAGATCCGGAATATCTTGGCTGAATCAGGTTCAGATGTGAATGATGAGATTGATTTCGAAAGCTTCCTTAAAGTGAGTATTTAATTAAGTTTTTTTTTTTTGTATTAGCGAGTCCATTTGGTTTGTTTACTCATTGCTGTTGACTGAATGGAAATGAACAATGTANATTAGTCTAGTAGTTAAACAAAGTTTTCAGGGGTTCTAGCTGATTAACAAGAAAGTAGAATTTGCTGTACTTTCACCTCATTATTCTGAATTTTAGTTTAGTGACATTATGGTCAATTGCTTGTGTTCGACAGACATACTTGAATCTACAAGCTCGAGCTGCCCCAAAAGTAGGCAGTTCTAAAAGTTCGTCGTCCTTCCTGAAGGCTTCCACAACTACACTCCTTCACACGATCAGTGAATCAGAGAAATCATCTTATGTTGCTCATATAAACAGCTATTTAAGAGATGATCCATTCTTAAAGCAATTTCTTCCAATAGATCCAGCTTCAAATGCTTTGTTTGATTTGGCAAAGGATGGAGTTCTTTTATGGTATTTAAACTTAACCTGTTTTTATGTTATTCTATGATGAGAGTTTCTGTTGGCTCATTATACTTTTCTTTATTTGGTTCATTAGTAAGCTGATCAATGTAGCTGTACCTGGCACAATAGACGAGCGGGCTATTAACATGAAACGAGTAATTAATCCATGGGAGAGAAATGAGAATCACACCCTTTGCCTCAATTCTGCAAAGGCTATTGGCTGCACTGTTGTCAATATTGGCACTCAGGACCTGNTTGAAGGACGAGTGAGTNCAATATTTTTTCTTCATTTGCATTACTTCAATGAACCTCTGGGATGTATGTATAAGTTTNNNNNCTCTATATCTTTGCAGCCTCACCTAATACTTGGGCTTTTTTCTCAAATCA</genome_strand>
        <mrna_strand>GTAAAGTTACAATTGGAGACTTACCGCCTTTGATGGCGAAACTAAAGGCTTTCAATGAGATGTTTAATGAGGAAGAGATCCGGAATATCTTGGCTGAATCAGGTTCAGATGTGAATGATGAGATTGATTTCGAAAGCTTCCTTAAA...................................................................................................................................................................................................................................ACATACTTGAATCTACAAGCTCGAGCTGCCCCAAAAGTAGGCAGTTCTAAAAGTTCGTCGTCCTTCCTGAAGGCTTCCACAACTACACTCCTTCACACGATCAGTGAATCAGAGAAATCATCTTATGTTGCTCATATAAACAGCTATTTAAGAGATGATCCATTCTTAAAGCAATTTCTTCCAATAGATCCAGCTTCAAATGCTTTGTTTGATTTGGCAAAGGATGGAGTTCTTTTATG.....................................................................................TAAGCTGATCAATGTAGCTGTACCTGGCACAATAGACGAGCGGGCTATTAACATGAAACGAGTAATTAATCCATGGGAGAGAAATGAGAATCACACCCTTTGCCTCAATTCTGCAAAGGCTATTGGCTGCACTGTTGTCAATATTGGCACTCAGGACCTGGTTGAAGGACGA.......................................................................................CCTCACCTAGTACTTGGGCTTATTTCTCAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E277805" ref_strand="+" ref_description="SGN-E277805 [cLEL-5-K13]">
      <seq>gcacgagctctcttcctcctctgtttttgctccaaatcaaagcaaacacccatctctctctgttgaagacctttctataattgacaagaacagtcaaaacctttgaaattaacaagaaaacgaagttcgtttaagcaaatctttggtttttttttttaagtaagtagtactgggaatcgcgggggaaagggagatgtcttttgttggtgttattgtttctgatcaatggctacatagtcaattcactcaggtggagcttcgcagcctcaaatcgaaattcatttcagttaagagtcaaaatggtaaagttacaattggagacttaccgcctttgatggcgaaactaaaggctttaatgagatgttaatgaggaaaaagatccggaatatcttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="4588" stop="5978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4881" g_stop="5044" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5045" i_stop="5339" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5340" g_stop="5452" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="277" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5453" i_stop="5560" i_length="108">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5561" g_stop="5678" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="397" r_length="120" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E277805" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4881" e_stop="5044"/>
          <exon e_start="5340" e_stop="5452"/>
          <exon e_start="5561" e_stop="5678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCTCTCTTCCTCCTCTGTTTTTGCTCCAAATCAAAGCAAACACCCATCTCTCTCTGTTGAAGAGTTTTCTATAATTGACAAGAACAGTCAAAACCTTTGAAATTAACAAGAAAACGAAGTTCGTTTAAGCAAATCTTTGGTTTTTTTTTTTAAGTAAGGTAACTTGTTAATGGATTATAGTCAATCATATGGTTGTTCAGTTTGATGTTTGGACTAGGGATGATAATTTTGTATGTTGAGTAATGGGTAATTGGAGATTCATTGACTTGACGTCTCTGCTTTGCATGAAGTATAAAACAGTTAGTTTTTGTTGCTCATTTTGGATTTAACCATTAGTGTTGACTGGGTGTGTTTAATTTTTTGTGGGGTTGTTGAAATTCTGGGTTTTATAGCTTCATGTTGAATTTAAGTGGAAGTTTTAAGATGGGGTTTGATCTTTTTGTGTTATTGCAGTAGTACTGGGAATCGCGGGGGAAAGGGAGATGTCTTTTGTTGGTGTTATGGTTTCTGATCAATGGCTACATAGTCAATTCATTCAGGTGGAGCTTCGCAGCCTCAAATCGAAAGTATGGTTTCGACTCCTTTTCTATCTGCTTGTTGGATTTGATTGATGTATTGTTTTTNGAATGTGATGTTTATAATCTGTTGGTTTGTTTGTTTTTTGGGTTCCTTAATTCATTTCAGTTAAAAGTCAAAATGGTAAAATTAACATTGGAGACTTACCGCC-TTGATGGCGAAACTAAAAGGTTTCAATGAAATGTTAATGAGGAAAAA-ATCCGGAATAT-TTGGNTG</genome_strand>
        <mrna_strand>GCACGAGCTCTCTTCCTCCTCTGTTTTTGCTCCAAATCAAAGCAAACACCCATCTCTCTCTGTTGAAGACCTTTCTATAATTGACAAGAACAGTCAAAACCTTTGAAATTAACAAGAAAACGAAGTTCGTTTAAGCAAATCTTTGGTTTTTTTTTTTAAGTAAG.......................................................................................................................................................................................................................................................................................................TAGTACTGGGAATCGCGGGGGAAAGGGAGATGTCTTTTGTTGGTGTTATTGTTTCTGATCAATGGCTACATAGTCAATTCACTCAGGTGGAGCTTCGCAGCCTCAAATCGAAA............................................................................................................TTCATTTCAGTTAAGAGTCAAAATGGTAAAGTTACAATTGGAGACTTACCGCCTTTGATGGCGAAACT-AAAGGCTTTAATGAGATGTTAATGAGGAAAAAGATCCGGAATATCTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E251866" ref_strand="+" ref_description="SGN-E251866 [cLEG-14-F14]">
      <seq>tgccgtagaaaacgccatttcaaagaaattgagagaaggaattgtgaagcttgattcttcattgcagtccctaccaaaggaaattccaataagaaacattgctgctttaaatgttacctttgttggtaacccacaatttagagactcgtctcttgttctttcaattaatgggttaattagtgccaaggaagcatacacagtacctccttactatcacttatttgcgtctctagaacacttattagcgtcaattcctttgaaggatccggaaagcatggttactatttccttgcatgaaaaagttttagcgtctgcatcagctgtttactatgatgccaataaaatgcactggattgttgacaaagtacccgaacagtccttgttaaacacagctggatggaggttcattatcccacaactttacaggcgatatccaaatgctgatatgaatctgaatgtttccatttattctccaccccatctgataattaaagaacatcagattgatctgacggttcatgcagatgtcattattaatgttttgaattcaagtgaagtgacaccagttgcatgcttttcaatggcagtcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="8917" stop="10377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9217" g_stop="9550" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9551" i_stop="9818" i_length="268">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9819" g_stop="10067" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="583" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E251866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9217" e_stop="9550"/>
          <exon e_start="9819" e_stop="10067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTAGAAAACGCCATTTCAAAGAAATTGAGAGAAGGAATTGTGAAGCTTGATTCTTCATTGCAGTCCCTACCAAAGGAAATTCCAATAAGAAACATTGCTGCTTTAAATGTTACCTTTGTTGGTAACCCACAATTTAGAGACTCGTCTCTTGTTCTTTCAATTAATGGGTTAATTAGTGCCAAGGAAGCATACACAGTACCTCCTTACTATCACTTATTTGCGTCTCTAGAACACTTATTAGCGTCAATTCCTTTGAAGGATCCGGAAAGCATGGTTACTATTTCCTTGCATGAAAAAGTTTTAGCGTCTGCATCAGCTGTTTACTATGATGTAAGTACTTCAGCTATTCTTTCCAAGTAATCCAATGCATAACTAGAACAAAATTGATTATATATTCTACCAGCTATCCATTGACCTTTACATTTGTACATGCATTGTTCCATGTCTCAATTTGATCATTCAACATGCCTAGTTCTAATATTTTCTATGAAAATTAGTTAACAGTTGTACTCAATGTTAAGTGCCTTTGACTCGTGCAAGTTTCATTTTGGAGTATTATATGGCATGACTTTGTATCTAATAGGTGCTATCTATTCAGGCCAATAAAATGCACTGGATTGTTGACAAAGTACCCGAACAGTCCTTGTTAAACACAGCTGGATGGAGGTTCATTATCCCACAACTTTACAGGCGATATCCAAATGCTGATATGAATCTGAATGTTTCCATTTATTCTCCACCCCATCTGATAATTAAAGAACATCAGATTGATCTGACGGTTCATGCAGATGTCATTATTAATGTTTTGAATTCAGGTGAAGTGACACCAGTTGCATGCTTTTCAATG</genome_strand>
        <mrna_strand>TGCCGTAGAAAACGCCATTTCAAAGAAATTGAGAGAAGGAATTGTGAAGCTTGATTCTTCATTGCAGTCCCTACCAAAGGAAATTCCAATAAGAAACATTGCTGCTTTAAATGTTACCTTTGTTGGTAACCCACAATTTAGAGACTCGTCTCTTGTTCTTTCAATTAATGGGTTAATTAGTGCCAAGGAAGCATACACAGTACCTCCTTACTATCACTTATTTGCGTCTCTAGAACACTTATTAGCGTCAATTCCTTTGAAGGATCCGGAAAGCATGGTTACTATTTCCTTGCATGAAAAAGTTTTAGCGTCTGCATCAGCTGTTTACTATGAT............................................................................................................................................................................................................................................................................GCCAATAAAATGCACTGGATTGTTGACAAAGTACCCGAACAGTCCTTGTTAAACACAGCTGGATGGAGGTTCATTATCCCACAACTTTACAGGCGATATCCAAATGCTGATATGAATCTGAATGTTTCCATTTATTCTCCACCCCATCTGATAATTAAAGAACATCAGATTGATCTGACGGTTCATGCAGATGTCATTATTAATGTTTTGAATTCAAGTGAAGTGACACCAGTTGCATGCTTTTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E356218" ref_strand="+" ref_description="SGN-E356218 [cTOS-20-L15]">
      <seq>gattgcaggcagtcagtggctcagcttctccatggatttccaacaataatcttggaggaagtattggattagatgaactctctttatctttgaaatggagtaaaattggcaatttgcatgtgaatctagtccgggcactgatttcaactgcactgaggactgtgatcctgccatacataaatttaaaacttagtagaggatatcagctgcccacatttcacggctacatgctttcaaatgctaatatcttgtgcagtgactcatgggattaagatttcccagtgacgttgcgtctgtcaatcaatttatttataaagttagttcctacatcacatgggntgtgagctatgttgcttggaccctctaaaatgctgctactctcgtgtcaaatcctccaaaattggatagcttttggaggatccaagacacacctgacagtatgtttgaagggtctgatcaacgtaagttgtgagttcctcattcccactgcaccagacgcttttactgaaatgtagcttttggagaatccgacagacaaaaatgtatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="10446" stop="12108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10746" g_stop="10879" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10880" i_stop="11398" i_length="519">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11399" g_stop="11808" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="549" r_length="415" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E356218" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10746" e_stop="10879"/>
          <exon e_start="11399" e_stop="11808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGCAGGCAGTCAGTGGCTCAGCTTCTCCATGGATTTCCAACAATAATCTTGGAGGAAGTATTGGATTAGATGAACTCTCTTTATCTTTGAAATGGAGTAAAATTGGCAATTTGCATGTGAATCTAGTCCGGGTATGTCTTTAGTTCACAGTGTTCTATTTTCCAGTTCGTTATGTTTTCAACTAAGAATCAACCTTGCTGCACTTTAACTCTTATTCCAGTTTGTTGCTGGTACCTTTTTGAGTCATGATGTTCATTTAAAAGCGTTTTAATCAAATAGTGCTGACATAGAAAAGCATTTAACAAATGGTCATCTACACTCATTGGCACTGTATCATTGATGTTAATTACCACTATCTTGCTTGCTTATTGCTGTAACCCCTTGTCTCTTCATATGCTGCTTAAACATTGCATCAATTGGACCTCTTTGTTATGGTTTTATTTATTCATCTCAAAAAACTGCTAGGCTTTATAGCTGTGTCTACGTAAATGGAACGAACGATTAGCTGCATAGGCTTTCTAGCTGTATCAACATTAGCATGATAAATATCATTTAGATATTGTTTTAGCATTATTATTGTGTGACAACAAAACACAGTTCCTTTCTCTAGCTGATCACAAAACTGACCCGAACCCTGAAAACTCTTGCAGGCACTGATTTCAACTGCACTGAGGACTGTGATCCTGCCATACATAAATTTAAAACTTAGTAGAGGATATCAGCTGCCCACATTTCACGGCTACATGCTTCAAAATGCTAATATCTTGTGCAGTGACTCAT-GGATTAAGATTT-CCAGTGACGTTGCGTCTGTCAATCAA-TTATTTAT-AAGTTAGTTCCTACATCACAT-GGTTGTGAGCTATGTTGCTTGGACCCTCTAAAATGCTGCTACTCTCGTGTCAAATCCTCCAAAATTGGATAGCTTTTGGAGGATCCAAGACACACCTGACAGTATGTTTGAAGGGTCTGATCAACGTAAGTTGTGAGTTCCTCATTCCCACTGCACCAGACGCTTTTACTGAAATGTAGCTTTTGGAGAATCCGACAGACAAAAATGTATACT</genome_strand>
        <mrna_strand>GATTGCAGGCAGTCAGTGGCTCAGCTTCTCCATGGATTTCCAACAATAATCTTGGAGGAAGTATTGGATTAGATGAACTCTCTTTATCTTTGAAATGGAGTAAAATTGGCAATTTGCATGTGAATCTAGTCCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGATTTCAACTGCACTGAGGACTGTGATCCTGCCATACATAAATTTAAAACTTAGTAGAGGATATCAGCTGCCCACATTTCACGGCTACATGCTTTCAAATGCTAATATCTTGTGCAGTGACTCATGGGATTAAGATTTCCCAGTGACGTTGCGTCTGTCAATCAATTTATTTATAAAGTTAGTTCCTACATCACATGGGNTGTGAGCTATGTTGCTTGGACCCTCTAAAATGCTGCTACTCTCGTGTCAAATCCTCCAAAATTGGATAGCTTTTGGAGGATCCAAGACACACCTGACAGTATGTTTGAAGGGTCTGATCAACGTAAGTTGTGAGTTCCTCATTCCCACTGCACCAGACGCTTTTACTGAAATGTAGCTTTTGGAGAATCCGACAGACAAAAATGTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E736053" ref_strand="+" ref_description="SGN-E736053 [LC04AF10]">
      <seq>cactcaattacccgccaataagtagatttgaatggctgagatcgaaccagatcgggtattggaagtattggggaagaggaggctggtagcggtggatgataggagattgacgaagaaggcaagggaggtggtggatgggaatgtgagggaagttgctgagatggtgcttgtattatctgctctagggaagatgagaggaggtagaggtccaactgttgcagagaaggagatggtggaggaggctagggagagattagctgaggtttgtttgaagtttgcgccgaaggatgtgtttccgagtgatggttttggaagtgttattgaggatcttgggattaataagctgacggatgtgagtgtagggtattggcagcctcctaaaatgtcgattactgagaagctgctggttgtgacaagaaagatggaaaaggcgcaggaattttctctaccctctgccagctacccatctcaacggtctcaaatagcaatgggtacagcaactgaaagccatagtgcatcacagattaaaatgtttcctcaaccaagtcatgcagtaaattcatcaggcagcttacaacctgcttcacctatggaacatgggactccattaagttctgcatctttcccttatcagctgcccaccagtgaggtcaggcctttaatcaacggtggggtggtctctggtaatcttgtaagggattcttcttcagttgcatctcccagagttggaaaacatcatttccaaatggatggacggcaaagtggatcttcccatgcattgcaagttcaagcaactactggcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="17377" stop="20027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17676" g_stop="17697" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17698" i_stop="17795" i_length="98">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17796" g_stop="18194" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="421" r_length="399" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18195" i_stop="18837" i_length="643">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18838" g_stop="19207" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="791" r_length="370" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19208" i_stop="19710" i_length="503">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19711" g_stop="19727" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="808" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E736053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17676" e_stop="17697"/>
          <exon e_start="17796" e_stop="18194"/>
          <exon e_start="18838" e_stop="19207"/>
          <exon e_start="19711" e_stop="19727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCAATTACCCGCCAATAAGGTATAATTTTTCACTCAATTTTTTCAAATTTCTCTCTCTCTAGGGTTAATTTCTCCTCGTTGTTCTCCAATGGCGTCTTACTTCTCTCTTTCTCACAGTAGATTTGAATGGCTGAGATCGAACCAGATCGGGTATTGGAAGTATTGGGGAAGAGGAGGCTGGTAGCGGTGGATGATAGGAGATTGACGAAGAAGGCAAGGGAGGTGGTGGATGGGAATGTGAGGGAAGTTGCTGAGATGGTGCTTGTATTATCTGCTCTAGGGAAGATGAGAGGAGGTAGAGGTCCAACTGTTGCAGAGAAGGAGATGGTGGAGGAGGCTAGGGAGAGATTAGCTGAGGTTTGTTTGAAGTTTGCGCCGAAGGATGTGTTTCCGAGTGATGGTTTTGGAAGTGTTATTGAGGATCTTGGGATTAATAAGCTGACGGATGTGAGTGTAGGGTATTGGCAGCCTCCTAAAATGTCGATTACTGAGAAGCTGCTGGTTGTGAAAAGAAAGGTATGGAAGCTTTATTTTTAGTTTGGGATACACTGTTTGTGTGAGGGTGAGGGTGGTTGTGTAATGGGAGAGAGTATATGTCTAAGATGATTGCTTATTCTGTTGAATTGGTAGATTATTTAGTCTGTCTTGTTTTGGATTCATTCTATATTTTGTTAATATGAGCTTTTTTGCTGAATTATTAGATTATTTAGTCTATCTTGTTTTGGATTAATTCTGTAGTTGGTAAATATGAACTCCTTTTAGAGGGGTGTCGAGATAATTAAGCTACTCAATTGTTTTGGATTAGGACCTTGGTTTGGTGTTTGTAGTCTTCTTTGCAAGTATTAGTGTAGAATTACCATTCAGGGTAACTATTCCTCGTTTTTGCTTGTAAAAATAAAATAAAATTGGAAGCTTGGGAGTTTTTCAACACAGTTGAAGGATAATTGATAGATCAAGTGCATGCAGATTACAAAATTTGAACTTTTTGGTTAATTTGTTGCTCTTTGTCTGTAAAGCTTAGCTGGCTAGGAGTTCATGGATTTGATTAAAAGCAAGTCCACTGCTTCACAATATAACCAATTGTAGTCAAGTCAGACTGTTGAGTTGCATCTTATCGAACTCAGTTTGCATTTTTATCTCTTCTCTTTTTTGCTTTTAGATGGAAAAGGCGCAGGAATTTTCTCTACCCTCTGCCAGCTACCCATCTCAACGGTCTCAAATAGCAATGGGTACAGCAACTGAAAGCCATAGTGCATCACAGATTAAAATGTTTCCTCAACCAAGTCATGCAGTAAATTCATCAGGCAGCTTACAACCTGCTTCACCTATGGAACATGGGACTCCATTAAGTTCTGCATCTTTGCCTTATCAGCTGCCCACCAGTGAGGTCAGGCCTTTAATCAACGGTGGGGTGGTCTCTGGTAATCTTGTAAGGGATTCTTCTTCAGTTGCATCTCCCAGAGTTGGAAGACATCATTTCCAAATGGATGGACGGCAAAGTGGATCTTCCCATGCATTGCAAGTTCAAGGTAACCAATTTGTGTTCCTCTAAACTGTCCAAGGTGCGTCAGGATCTTTGTTTGTAAGTGATTCCCACCATGAGGAACTTTACCAACTTGCCAGAATAAATAGGGGGACTTGTCTAAATGACATTCAGGTTAGGTATGGAGCATAGCTTTCTAGGTTGTACAATTTCTTCACTTAGCCTAGTACATCTTCTAGCTTCAAACAAGTCAGAAAGATCCTAGGTGATTATTAGGTCGAACATGCTTACTTATCAGCATGGTCATCATCTAGGATCAGAGTTGACCATTGAGTGCCATTTTACAAGTAGCTTAAGTGATCTTTCATTCGACTCTAATTCATCTAGCTGTTCTCTTTATCTTTTCAACAACACATAGCCAGACCTAGTTTGCTGGTCATCGATCAAGGAAGTTGTCTTTGCTTGAATTGTTTTCACGAATGTTCCCTTTAAATTTTACTCTTTATTCATTTTTTCGTGCTGAACCATCTGAAGCTTATTGATTTGTAGCAACTACTGGCAATCAC</genome_strand>
        <mrna_strand>CACTCAATTACCCGCCAATAAG..................................................................................................TAGATTTGAATGGCTGAGATCGAACCAGATCGGGTATTGGAAGTATTGGGGAAGAGGAGGCTGGTAGCGGTGGATGATAGGAGATTGACGAAGAAGGCAAGGGAGGTGGTGGATGGGAATGTGAGGGAAGTTGCTGAGATGGTGCTTGTATTATCTGCTCTAGGGAAGATGAGAGGAGGTAGAGGTCCAACTGTTGCAGAGAAGGAGATGGTGGAGGAGGCTAGGGAGAGATTAGCTGAGGTTTGTTTGAAGTTTGCGCCGAAGGATGTGTTTCCGAGTGATGGTTTTGGAAGTGTTATTGAGGATCTTGGGATTAATAAGCTGACGGATGTGAGTGTAGGGTATTGGCAGCCTCCTAAAATGTCGATTACTGAGAAGCTGCTGGTTGTGACAAGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAAAGGCGCAGGAATTTTCTCTACCCTCTGCCAGCTACCCATCTCAACGGTCTCAAATAGCAATGGGTACAGCAACTGAAAGCCATAGTGCATCACAGATTAAAATGTTTCCTCAACCAAGTCATGCAGTAAATTCATCAGGCAGCTTACAACCTGCTTCACCTATGGAACATGGGACTCCATTAAGTTCTGCATCTTTCCCTTATCAGCTGCCCACCAGTGAGGTCAGGCCTTTAATCAACGGTGGGGTGGTCTCTGGTAATCTTGTAAGGGATTCTTCTTCAGTTGCATCTCCCAGAGTTGGAAAACATCATTTCCAAATGGATGGACGGCAAAGTGGATCTTCCCATGCATTGCAAGTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTGGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E329768" ref_strand="+" ref_description="SGN-E329768 [cTOD-3-A6]">
      <seq>agcaactgaaagccatagtgcatcacagattaaaatgtgtcctcaaccaagtcatgcagtaaattcatcaggcagcttacaacctgcttcacctatggaacatgggactccattaagttctgcatctttgccttatcagctgcccaccagtgaggtcaggcctttaatcaacggtggggtggtctctggtaatcttgtaagggattcttcttcagttgcatctcccagagttggaagacatcatttccaaatggatggacggcaaagtggatcttcccatgcattgcaagttcaagcaactactggcaatcactcaactgtcagaactccaacttggtcggtgctacctgcatcagtttcagcagctcgacttggggcggatcacaaggcgacaccacatgcaactattaaaattgagggaggtgctgatgtcaggtcaacaatggcaccacaagtgacaacatctaggtcatttattactgagagcacatctggaaattcaccaagcacataccctcatttacaaggcacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="18612" stop="20247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18912" g_stop="19207" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19208" i_stop="19710" i_length="503">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19711" g_stop="19947" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="533" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E329768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18912" e_stop="19207"/>
          <exon e_start="19711" e_stop="19947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACTGAAAGCCATAGTGCATCACAGATTAAAATGTTTCCTCAACCAAGTCATGCAGTAAATTCATCAGGCAGCTTACAACCTGCTTCACCTATGGAACATGGGACTCCATTAAGTTCTGCATCTTTGCCTTATCAGCTGCCCACCAGTGAGGTCAGGCCTTTAATCAACGGTGGGGTGGTCTCTGGTAATCTTGTAAGGGATTCTTCTTCAGTTGCATCTCCCAGAGTTGGAAGACATCATTTCCAAATGGATGGACGGCAAAGTGGATCTTCCCATGCATTGCAAGTTCAAGGTAACCAATTTGTGTTCCTCTAAACTGTCCAAGGTGCGTCAGGATCTTTGTTTGTAAGTGATTCCCACCATGAGGAACTTTACCAACTTGCCAGAATAAATAGGGGGACTTGTCTAAATGACATTCAGGTTAGGTATGGAGCATAGCTTTCTAGGTTGTACAATTTCTTCACTTAGCCTAGTACATCTTCTAGCTTCAAACAAGTCAGAAAGATCCTAGGTGATTATTAGGTCGAACATGCTTACTTATCAGCATGGTCATCATCTAGGATCAGAGTTGACCATTGAGTGCCATTTTACAAGTAGCTTAAGTGATCTTTCATTCGACTCTAATTCATCTAGCTGTTCTCTTTATCTTTTCAACAACACATAGCCAGACCTAGTTTGCTGGTCATCGATCAAGGAAGTTGTCTTTGCTTGAATTGTTTTCACGAATGTTCCCTTTAAATTTTACTCTTTATTCATTTTTTCGTGCTGAACCATCTGAAGCTTATTGATTTGTAGCAACTACTGGCAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGA</genome_strand>
        <mrna_strand>AGCAACTGAAAGCCATAGTGCATCACAGATTAAAATGTGTCCTCAACCAAGTCATGCAGTAAATTCATCAGGCAGCTTACAACCTGCTTCACCTATGGAACATGGGACTCCATTAAGTTCTGCATCTTTGCCTTATCAGCTGCCCACCAGTGAGGTCAGGCCTTTAATCAACGGTGGGGTGGTCTCTGGTAATCTTGTAAGGGATTCTTCTTCAGTTGCATCTCCCAGAGTTGGAAGACATCATTTCCAAATGGATGGACGGCAAAGTGGATCTTCCCATGCATTGCAAGTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTGGCAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E244278" ref_strand="+" ref_description="SGN-E244278 [cLEF-37-E5]">
      <seq>tttgtagcaactactgttaatcactcaactgtcagaactccaacttggtcggtgctacctgcatcagtttcagcagctcgacttggggcggatcacaaggcgacaccacatgcaactattaaaattgagggaggtgctgatgtcaggtcaacaatggcaccacaagtgacaacatctaggtcatttattactgagagcacatctggaaattcaccaagcacataccctcatttacaaggcacgagctttattcaggcttctcctctgagcagtacacattctgaaattggcaagcttgttcacaaattcttacagcctctgcttcctgagcggcctgcatggactctgccatcccgtgattacatgaataaggctttggcttgtcaaatgtgcaattcaacaataaatgaggttgacaacgtacttgtgtgtgatgcttgtgaaaaaggctaccacttaaaatgtctccaaacaacaagtcaaaaaaatgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="19404" stop="20498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19704" g_stop="20198" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E244278" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19704" e_stop="20198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAGCAACTACTGGCAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGAGCTTTATTCAGGCTTCTCCTCTGAGCAGTACACATTCTGAAATTGGCAAGCTTGTTCACAAATTCTTACAGCCTCTGCTTCCTGAGCGGCCTGCATGGACTCTGCCATCCCGTGATTACATGAATAAGGCTTTGGCTTGTCAAATGTGCAATTCAACAATAAATGAGGTTGACAACGTACTTGTGTGTGATGCTTGTGAAAAAGGCTACCACTTAAAATGTCTCCAAACAACAAGTCAAAAAAATGTACCT</genome_strand>
        <mrna_strand>TTTGTAGCAACTACTGTTAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGAGCTTTATTCAGGCTTCTCCTCTGAGCAGTACACATTCTGAAATTGGCAAGCTTGTTCACAAATTCTTACAGCCTCTGCTTCCTGAGCGGCCTGCATGGACTCTGCCATCCCGTGATTACATGAATAAGGCTTTGGCTTGTCAAATGTGCAATTCAACAATAAATGAGGTTGACAACGTACTTGTGTGTGATGCTTGTGAAAAAGGCTACCACTTAAAATGTCTCCAAACAACAAGTCAAAAAAATGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E352019" ref_strand="+" ref_description="SGN-E352019 [cTOS-13-I12]">
      <seq>caaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttattcgttaatgtattttttcttacacgcaccaactataataattgtgcctcgatccctagtaagttgggaatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25740" stop="26964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26040" g_stop="26667" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E352019" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26040" e_stop="26667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</genome_strand>
        <mrna_strand>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E349642" ref_strand="+" ref_description="SGN-E349642 [cTOS-3-A11]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25741" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26041" g_stop="26571" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="543"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E349642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26041" e_stop="26571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E351517" ref_strand="+" ref_description="SGN-E351517 [cTOS-12-O1]">
      <seq>aaaatggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaaagttgacatttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25741" stop="26822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26041" g_stop="26522" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E351517" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26041" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAAGTTGACA-TTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E357041" ref_strand="+" ref_description="SGN-E357041 [cTOS-22-G20]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25744" stop="26874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="26574" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="541"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E357041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="26574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E356545" ref_strand="+" ref_description="SGN-E356545 [cTOS-21-E2]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctatagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaatttgttcgcttcactttgtgaagtttgacattttttttttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25744" stop="26822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="26522" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E356545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="26522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTATAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTTGTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E351656" ref_strand="+" ref_description="SGN-E351656 [cTOS-8-I7]">
      <seq>atggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaagggtcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggaatttaatgcgtatgctaaagaaatggtgggactaattaagaaaaaagaacatgtatttttacctgaatttgttttgaattggttcgcctcactttgtgaagattgacatttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25744" stop="26820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26044" g_stop="26520" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E351656" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26044" e_stop="26520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTT</genome_strand>
        <mrna_strand>ATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGGTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGAATTTAATGCGTATGCTAAAGAAATGGTGGGACTAATTAAGAAAAAAGAACATGTATTTTTACCTGAATTTGTTTTGAATTGGTTCGCCTCACTTTGTGAAGATTGACATTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E354271" ref_strand="+" ref_description="SGN-E354271 [cTOS-16-L17]">
      <seq>tggctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttcggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25745" stop="26889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26045" g_stop="26588" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="557"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E354271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26045" e_stop="26588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</genome_strand>
        <mrna_strand>TGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E352263" ref_strand="+" ref_description="SGN-E352263 [cTOS-13-H16]">
      <seq>gctaaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25747" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26047" g_stop="26574" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E352263" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26047" e_stop="26574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>GCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E354135" ref_strand="+" ref_description="SGN-E354135 [cTOS-16-F16]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25749" stop="26883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26049" g_stop="26580" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="546"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E354135" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26049" e_stop="26580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACA-TTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E349272" ref_strand="+" ref_description="SGN-E349272 [cTOS-2-D14]">
      <seq>taaatcatatagtacaatgatttttttgctttttgcactgattatcacagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25749" stop="26883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26049" g_stop="26580" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="547"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E349272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26049" e_stop="26580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E213293" ref_strand="-" ref_description="SGN-E213293 [cLEC-71-G12]">
      <seq>tttttttgctttttgcactgattatcacagttcaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaactggagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25769" stop="83638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26069" g_stop="26571" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26572" i_stop="27376" i_length="805">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27377" g_stop="27409" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="536" r_length="33" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E213293" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213293" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26069" e_stop="26571"/>
          <exon e_start="27377" e_stop="27409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGGATGTTGTAGAGTGTGGAAACATCATGAAAAAGGACGTTGGAGAGGTGATGCTTCATCGCAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGNCTC</genome_strand>
        <mrna_strand>TTTTTTTGCTTTTTGCACTGATTATCACAGTTCAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACTGGAGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E341926" ref_strand="+" ref_description="SGN-E341926 [cTOF-9-J13]">
      <seq>ttttttgccttttgcaccgactctcacagtacaaattgcaaccaataaatgcctgcagaaacaccagaagttacttgcaaggtcacaatcaatgaccttatgctatgtttaccctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgagttgttgggggttccggttnnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25770" stop="26888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26070" g_stop="26580" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="545"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E341926" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26070" e_stop="26580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAA-CAATAAATG-CTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTA-CCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</genome_strand>
        <mrna_strand>TTTTTTGCCTTTTGCACCGACTCTCACAGTACAAATTGCAACCAATAAATGCCTGCAGAAACACCAGAAGTTACTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E350476" ref_strand="+" ref_description="SGN-E350476 [cTOS-5-C5]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25795" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26095" g_stop="26572" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E350476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26095" e_stop="26572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E353813" ref_strand="+" ref_description="SGN-E353813 [cTOS-10-I6]">
      <seq>acagtacaaattgcaacaataaatgctgcagaaacaccagaagttatttgcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgtttttgattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctgggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25795" stop="26845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26095" g_stop="26547" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E353813" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26095" e_stop="26547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTG</genome_strand>
        <mrna_strand>ACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTTGATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E722721" ref_strand="+" ref_description="SGN-E722721 [FC18AD12]">
      <seq>gggcgattggcggccaatcggccgaattggcaaggtcacaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgggcgtttgaaatttcgggtatttgaaaatttaaataaactttctttgagttgttggggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25840" stop="83622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26149" g_stop="26580" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="466" r_length="432" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26581" i_stop="27343" i_length="763">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27344" g_stop="27402" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="525" r_length="59" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E722721" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26149" e_stop="26580"/>
          <exon e_start="27344" e_stop="27402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGGATGTTGTAGAGTGTGGAAACATCATGAAAAAGGACGTTGGAGAGGTGATGCTTCATCGCAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGGGCGTTTGAAATTTCGGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTTGTTGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E552293" ref_strand="+" ref_description="SGN-E552293 [cTSB-3-H16]">
      <seq>acaatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25852" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26152" g_stop="26571" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E552293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26152" e_stop="26571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>ACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E715121" ref_strand="+" ref_description="SGN-E715121 [FB13BF05]">
      <seq>aatcaatgaccttatgctatgtttacctgcagtaatggggaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgaaatttctggtatttgaaaatttaaataaactttctttgagttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25854" stop="26875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26154" g_stop="26574" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="432"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E715121" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26154" e_stop="26574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT</genome_strand>
        <mrna_strand>AATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGAAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E554017" ref_strand="-" ref_description="SGN-E554017 [cTSC-2-P15]">
      <seq>gccaggaaatttcagcatcttcaggataatagaaacgaatagtcccttgtattttttaccatatcgatctttctttttaacccatttgtgacttttggtgcatggaagctggtggaagctcttgatcctgcaggttttgcaggttttgaagcaacactcttattgctctgcgaatggttagatttcacgactttagtttttagattnggattctccagcagagacnngcnntnnngnnncttttttttaaaaaaccccccccgaaaatttttaaacccccccctagggggaaaggggggcccccccccccccccaaaattttttttttttttttttttttttttttttttttttttttttttttttactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcggaggtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83625" stop="25893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34216" g_stop="34104" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.533"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34103" i_stop="33810" i_length="294">
            <donor d_prob="0.438" d_score="0.53"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33809" g_stop="33779" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="143" r_length="30" r_score="0.581"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33778" i_stop="32993" i_length="786">
            <donor d_prob="0.642" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32992" g_stop="32944" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="194" r_length="51" r_score="0.551"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32943" i_stop="32826" i_length="118">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32825" g_stop="32812" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="208" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32811" i_stop="32625" i_length="187">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32624" g_stop="32602" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="229" r_length="21" r_score="0.565"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32601" i_stop="32403" i_length="199">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32402" g_stop="32369" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="263" r_length="34" r_score="0.441"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32368" i_stop="31020" i_length="1349">
            <donor d_prob="0.039" d_score="0.00"/>
            <acceptor a_prob="0.536" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31019" g_stop="30994" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="287" r_length="24" r_score="0.538"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="30993" i_stop="29380" i_length="1614">
            <donor d_prob="0.228" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29379" g_stop="29353" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="314" r_length="27" r_score="0.370"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29352" i_stop="28580" i_length="773">
            <donor d_prob="0.754" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.68"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28579" g_stop="28529" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="365" r_length="51" r_score="0.667"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28528" i_stop="26575" i_length="1954">
            <donor d_prob="0.900" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="26574" g_stop="26193" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="747" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E554017" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554017" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34216" e_stop="34104"/>
          <exon e_start="33809" e_stop="33779"/>
          <exon e_start="32992" e_stop="32944"/>
          <exon e_start="32825" e_stop="32812"/>
          <exon e_start="32624" e_stop="32602"/>
          <exon e_start="32402" e_stop="32369"/>
          <exon e_start="31019" e_stop="30994"/>
          <exon e_start="29379" e_stop="29353"/>
          <exon e_start="28579" e_stop="28529"/>
          <exon e_start="26574" e_stop="26193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGATGTGAGTTTCGATTATATTGTGACAAGCTTTGATCAACTTTTTTCTCTCCTTTTGCTTTTATTTACTTTTCTATGATGATACATGAAAATACATTATTTCTTTTCATCTGTATGGTCACATGTATTTTATATGTATAAGAAAATATGTTTGGTGACATGGGCTCTGCTTGCCAGATTGGTTGACCTCTTATATTTATTATCAGCTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTATGTAGGTTCCATGCTTGTCGTAATTTGTTGCCTAGTATATTATTCTTTCTCAAAAAGTTTTAGGAGGCAGAGTAGTTATGGTCACATGTTACAACAACAGCATAACTAGTGTAATCCCACAAGTGAGATCTGGGGAGGGTGGTGTGTACGTAGCCTTACTCCTACCTCGTGAAGGTAGAGAAGCTGTTTCCCGTAGACCCCCAGCTCAAGTAACACATATGGTCGTAACTCGTATGTTGCACTGAATAATTATTGCAATTGTGGAAACAGACCTTTCGTTATTGATAAGTTTGAATGTGACCTTTCTTTCTGGAGAAAGTAGATGGAAATCAATGGGACAGATGGGGGGCTACTACTGTCCTTTTTGAAGTGTAATTGGAAAGATCTTATAATACTGTCATTTAAAGGAAAGCCTTAATGTAGACCTTCAAAGTTTCTTGTTTTTAGGCCCAATGACGGGCTCTTACTTTAGTGTGTGTTTCCCTGTTAACACTTTAATATTTTTGAGTTTTGAGCATCCTTCGGGGGCCCAGCCCAGTGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTAGCCTTCTGGGTCGAGCTCGTCGCACCAAGCTTGTCTAGTGCGGGTCACCTCTCCTATGTGGTTTGCGAGTTATTGCATAGAAGTGGGGGTTTAACCCGGTGCGCATCCAAAGGCTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAATAATTTTGAGTTTTG-AGCTTTGAACATGTGGCTGTTAAATTGCTTAGATTTCTTG-CTTGAAATAATTAGTTCCTTTCAAGAGCATCAGAAGACATAGTAATTGCAAGCTATTACTAAAGCTAATGTTTAGTTCATTTCTTTTGTTAGACAATGTTGTCCCACTAATTAGTTTAGTACAGTTTTTGGATTTTATATCATTTCAGTTCTTGATTGGGACATTTTATTTTGGATAAACAATGTTCTCCTACACTTTTTTTCTTTAGTAATATTAGCCTCCTGTAACTTTGCATGTCTTGATGCCTGTCTATGAAACACATTACTTCATCAAAATATATAATTGCAAGCTATTGTTGCTAACTGCCTGTGGCATTGTTGCAGGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATCAATGAAGTGTATTGTGCTAAACAGTTGGACTCATCGAGTGTGCAAACATTCTTCTGCTGTGTTTTCACTATTTGATTTATTTGTAGATTGTGGTTTTCATCGACTGAGCTATCGTTTCATAGTGTTGGTGTTATGTATGCATGCGTCTACGAGTCCCATCATCGTTTTTCTTTAGAGAGCTAATATATATGTGGTGATTCTGTACTTTTATTTGTTTGATAAACTATGTTCCTTGGAATATTCATCAATTTTGATTGCACCTAGAAAAGAAACAAGAAAAGTATATCTCCATAGTACAAGGAGAGTATCATAGTAATGCACAAATTTTAGTCATCTTGAGCTGTGAGTTGAAGCTAAGTTGTCAGCTTCTTTACATTAAGTAAATAAAAGTGTATATTGTATGTATAACAATTTAAGCTTTTCGATGAGATTATAAGTAAGTCGATGCACTAATGCAACCAACATTTATGAGTCTTGTCCTTGTTATTATCAAGTTCTATGTTTCTCATCATTCATTTTGGGTATTATTGATACCTCCAAGGAAAAACAATATCTTTTTCTGTAGGGTAAAAACATAGCCTAATCAAATTTCTTTTCTAGATTCCTAGGTTGAGAAAAACTATATATCACTATTAATCATCCATATAAAACTTACCCTTTCTCAATTACTTTCTATAGATACAAATTCTTGATTTTTCTTCTTCTTCTACAAGTCATGGGTGCAAGTACTCTTTGTGGGTTTGGACAAATTAGTTTAAAATGCCTTTGGGCATCAATGAAGAAGAAAAAAAGACAAAATCAACATCATCATGATCATCAGAAGAAGAATAAATTCTTGAAGGATGCTACTAATAGTAGTAAAAATGATTTTGTGACATTAGAGGAATGTATATTGGCTTCACCCAGGGTCTAATAAACAATCCTCTAATAAAGTTTATCCTTCACTTGGAGGACTATTATTATCTTACAATAATGGTAGTACTAATAATGTTGAAATTATTAGTAGCTATCAAAAAAATAATAGTTGTAGTACTAGTGAAGTTGTTGAAGTAATTAAAGATCAAAGAGAAGATAATTGTTCTTCAATTTGTAGAAGCCAAAGTGGAAAATTCAAGAAAAAAGTGAGTTTTAGATATCCTGAGGTGGCTGATGTATTCATATTAGACAATTGAATAAATAATAAAAATGTTATGTCACTATGATCACTGGCTACAATCAATAGCTTTTGACTGACTTCAAACTTTTCTGAGAGCCTTGAGTACAAACAAATCGTAATAAATAACGTTATCTTTAAATAAATCTTATTTGATGTGAATTCAAATTAATCAGTGATTTACTTGCAGTTGGTTTTTAAGTATTACTTATTGTATTGTTAGTTTAAATATAATGTTTATTTTTTTATTATATTATATCATAAAATATATTATTATATTATGATGAAAAATCTCATTTTATATAACAATTTATTCAATTTAATTGTGTCATTATCTTATTTTATTCTTTAATTACCAAACATTTTATAATAATTCTTTAAATCACATATCACATATCTTTAGTTTAATATAACATATAATAGTGATTTTTAAAAAATAATCATATTGAATCAAAATCAAATAAATAAATTAAAATGAAAATATTCTTATTTGGAAAGGCTGGTAAGATGTTGTTGACATGCATGCATATATATCATTGTCAAGAAGAGACAAAATAGAAAAGAAAATGAGACAAACTTACTGAATTACCAATTTTAATTATTAATGTTATATGTCACTTCATTTTCCTAAGAAAATATAGCATGTCCCTTGACTTATTATAACTTGCAAAATGTCTTTACTTTCCCATATTTTTTGTCGGACAATTATATAAAAAATGGAGTACCTAAACATTATTCATAATTCATAAAAGACAAGAAAAATTAAATATTTTTTTGTTCTTATTGATGTGTCATTACTTTTATATCACACAAGTATAGCAATTTAATTGGCCTCGTTCATCGTTAATGCAAGAGCGTTTGATCAGTGAGCTATATGTAATTATCATTAAAAAAATTGGTGATATTTTAAGATCAGAATCTATCTTAATTTGATCCTTTAATCAAGTAGTGTTTTCTTTTTTAGCTAAATTGTTCAAAAACATCTCAATATTCGATTAACTTCTCAGAAATTTCATAAAATGAGCTTACTAGAGATCTCAGTTATCAAACTTCGCATGAATTGCTAAGTACTTTTTTTTTTCATTTGTTGTTCGCTATTCGCATTGGAATCTGACTAAATTTAAATTTACGCTAGAAAGTCTTATATTTGGAAGTAAAATATTCCCTAACAAAAACGATTTCATATATAACCAGAGAGACTTAAACTCAAAATGTCTATTTACAAATAAATTAAATACTTACCACTCAACTATAATTCGATGTTGGTCATCATTTATTTTCTGTCTCACTGTAAATCATTCTCTAAGGAACAAAATTGTAGTGGGACTTTGGGCAAAGTATTCATGGTTTTGGTTTTGGATTTATCAGGCAAAATGAAAACAGGGCCCTAGTCTTGTACTCTTATATCCACTACACAACTAGTAATTAAAAGTAAAAATTAGTAAACTAATCAAAATAAATAACATATTTAATAAAAATATTTATACTTTATAAATATTAGCAATAATATCAAAAATGTCGTTATTTTAAAAAATTTATGTGTCCCAATTTTCTTCCTATTTTATCTCTCTTTTTCAATTAATTCTATATATCCTTTTTTTAGAAAAAAAAATTATTCTCTCTCATATTTTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTATCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAATTGCAAGTATTTTTTTGCCATATATTTTGTTTGTTTTTTTAGTTCAAAATTGAATCAACAAGAAATCCTTTGATTAACGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAGAATATTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGTTGAATCTAAGAGGCTTACTAGAGGTATTCATCTTAATCAACTAATTTCTGGTGACTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTATATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAAAGGGTAAGAACATTTGCAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTGGTATGCTTTCTTTAATTTGTATTCAAATCACTTATGTATAATATCAATATTTATATTTATTAAAAATTTCATGTTGCATGGTTTATGAATCTTGTATTTGTCCCTAATTTGTATTCATCCAAATGTATGTCAACTAGTTATGTATTTTATTTATAAGAAGAACAACTTTCTATTAGTTTATTTGTATTCGAATACAAATACAAATAATAGACATATTGGAATGAATACGACTTAGAAAAGGAAACAAGATTTTGAAAAGAAAAATAAATACATAGTGAAAATATATATGAATACAAATGTATTTCTTAAATAGCTACATTTTATTTGACATACATATTGGAATGAATACAAACTAACAAAGGTATGTCAACTTGAATTTGATATTTTTTTCTAATTTGTATTTATTCTAAAGATATGTCAACTAGTTATGCGTTTTATTTAAGAATGAGTACACCAAATATTCAATTATTTCTTTTCAATTTTATATTTCATTCACTTTTTCATCATACTAATTTTTTGTATTTTATATATTATTATACAAAATTCTAAATAAAAACTAAAATAAATAGAAATACAAATAAAATACATATTGAAATGAATACATATAGGATTNNNGAANAAAAAATTAACTATATANGGAAAAAATATATGAAAATANAAATATATTTCTTAAATGACTATATAAATAAATTCNNCATTACTATTGAAATGAATACAAACTAATAAAAAACTATTATAAATATAACTACAATATATTGTANAATGAACATAATTTTAAAAAGGTTAAATCCTGGAAAAAAAAAAAACACAATTTAAATTTAATTTGAACATGTTACTGGATCAAAAAATAAAAATGCTTGCCTTTTTTGAAAATACCCCCCCTAAATCCCCCCCTTNGGGTACTAANAAACTTAATTCCTTNNCATNACNTCANTNACTAAATTTTCCCTACCAANTCAACAGGCCTCTTTCCCAAAAATTCAACATTGGCACACCGAACTCCCTAAAGCGCACACCAAAAATTCGCATTTAAAACCTTCCCCAACTCAAATNCAACCTAACTTCTCCTAAATAACCCCTTGNTCTCCTAAAAAATCGTCCCTCAACCTCCACGTCCCAGAGNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGCGATGAAGCATCACCTCTCCAACGTCCTTTTTCATGATGTTTCCACACTCTACAACATCCTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</genome_strand>
        <mrna_strand>GCCAGGAAATTTCAGCATCTTCAGGATAATAGAAACGAATAGTCCCTTGTATTTTTTACCATATCGATCTTTCTTTTTAACCCATTTGTGACTTTTGGTGCATGGAAGCTGGT......................................................................................................................................................................................................................................................................................................GGAAGCTCTTGATCCTGCAG-GTTTTGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAGCAACACTCTTATTGCTCTGCGAATGGTTAGATTTCACGACTTT......................................................................................................................AGTTTTTAGATTNG...........................................................................................................................................................................................GATTCTCCAGC-AG-AGACNNGC.......................................................................................................................................................................................................NNTNNNGNNNCTTTTTTTTAAAAAACCCCCCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAATTTTTA-AACCCCCCCCTAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAGGGGGGCCCCCCCCCCCCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E551630" ref_strand="+" ref_description="SGN-E551630 [cTSB-1-F20]">
      <seq>gaagagacctccgaaaccgacgccggattgttgcgcagtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgaaaatttaaataaactttctttgagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatggggggggggggggggggccccctttcccccaataggggggtaaaaaaaatttcggggggggttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25893" stop="83623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26193" g_stop="26574" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26575" i_stop="34034" i_length="7460">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.628" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34035" g_stop="34066" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="414" r_length="32" r_score="0.719"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34067" i_stop="34117" i_length="51">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34118" g_stop="34210" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="507" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E551630" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26193" e_stop="26574"/>
          <exon e_start="34035" e_stop="34066"/>
          <exon e_start="34118" e_stop="34210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGGATTTATGGGTTCGGACGAATTCACTGGCTTTTTCGTATAGATCCTATGTTGAGTTAGAAAATTATTTTTTTTAAATGTATATTAACTTATGAACCTTAAATAAATCAATTTAGATTCTTCAAACTCTTAATCTTGACTCCGACAACTATATGATTCTCATTGTCAGTTAAGCTTGTCTTGAGTTTCTACATCTGCTATTTAGAAATGATATAGTCTCTTTATATAGTATGGACTGTTACGTTGTGGAGCTTGATTAATATTTGATGTACTGTCATATATTAATGTTCATATATTTATTCTCCATTTATTCTCTGTAACCTAAAATACTCTCATTTATTAATATATATATCCACCGCCGTGGAAGTTTACTCACGGAGTGTTACCACGAAACATTGATTTCTCTCTTTCTCTCTCATCTCTTTCTCTCTAAAGTTCTTGTGTTCTTCATTCGTTAAGTGTGTGGGGAATTCGATCCTAACATGGACAATCATTATCTTAAGAGCTCGTTCTTGAGATTGAGTTGAATTAAATTTTTAATTTCTTTATCAATTTCGATCTTATATAACAAAGGATGTTGTAGAGTGTGGAAACATCATGAAAAAGGACGTTGGAGAGGTGATGCTTCATCGCAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGNCTCTGGGACGTGGAGGTTGAGGGACGATTTTTTAGGAGANCAAGGGGTTATTTAGGAGAAGTTAGGTTGNATTTGAGTTGGGGAAGGTTTTAAATGCGAATTTTTGGTGTGCGCTTTAGGGAGTTCGGTGTGCCAATGTTGAATTTTTGGGAAAGAGGCCTGTTGANTTGGTAGGGAAAATTTAGTNANTGANGTNATGNNAAGGAATTAAGTTTNTTAGTACCCNAAGGGGGGGATTTAGGGGGGGTATTTTCAAAAAAGGCAAGCATTTTTATTTTTTGATCCAGTAACATGTTCAAATTAAATTTAAATTGTGTTTTTTTTTTTTCCAGGATTTAACCTTTTTAAAATTATGTTCATTNTACAATATATTGTAGTTATATTTATAATAGTTTTTTATTAGTTTGTATTCATTTCAATAGTAATGNNGAATTTATTTATATAGTCATTTAAGAAATATATTTNTATTTTCATATATTTTTTCCNTATATAGTTAATTTTTTNTTCNNNAATCCTATATGTATTCATTTCAATATGTATTTTATTTGTATTTCTATTTATTTTAGTTTTTATTTAGAATTTTGTATAATAATATATAAAATACAAAAAATTAGTATGATGAAAAAGTGAATGAAATATAAAATTGAAAAGAAATAATTGAATATTTGGTGTACTCATTCTTAAATAAAACGCATAACTAGTTGACATATCTTTAGAATAAATACAAATTAGAAAAAAATATCAAATTCAAGTTGACATACCTTTGTTAGTTTGTATTCATTCCAATATGTATGTCAAATAAAATGTAGCTATTTAAGAAATACATTTGTATTCATATATATTTTCACTATGTATTTATTTTTCTTTTCAAAATCTTGTTTCCTTTTCTAAGTCGTATTCATTCCAATATGTCTATTATTTGTATTTGTATTCGAATACAAATAAACTAATAGAAAGTTGTTCTTCTTATAAATAAAATACATAACTAGTTGACATACATTTGGATGAATACAAATTAGGGACAAATACAAGATTCATAAACCATGCAACATGAAATTTTTAATAAATATAAATATTGATATTATACATAAGTGATTTGAATACAAATTAAAGAAAGCATACCAAATTCTAAAAAAAAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGACAACTATTCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGCAAATGTTCTTACCCTTTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATATACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAGTCACCAGAAATTAGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTAGATTCAACCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAATATTCTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACGTTAATCAAAGGATTTCTTGTTGATTCAATTTTGAACTAAAAAAACAAACAAAATATATGGCAAAAAAATACTTGCAATTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATGAGAGATAAAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAAAATATGAGAGAGAATAATTTTTTTTTCTAAAAAAAGGATATATAGAATTAATTGAAAAAGAGAGATAAAATAGGAAGAAAATTGGGACACATAAATTTTTTAAAATAACGACATTTTTGATATTATTGCTAATATTTATAAAGTATAAATATTTTTATTAAATATGTTATTTATTTTGATTAGTTTACTAATTTTTACTTTTAATTACTAGTTGTGTAGTGGATATAAGAGTACAAGACTAGGGCCCTGTTTTCATTTTGCCTGATAAATCCAAAACCAAAACCATGAATACTTTGCCCAAAGTCCCACTACAATTTTGTTCCTTAGAGAATGATTTACAGTGAGACAGAAAATAAATGATGACCAACATCGAATTATAGTTGAGTGGTAAGTATTTAATTTATTTGTAAATAGACATTTTGAGTTTAAGTCTCTCTGGTTATATATGAAATCGTTTTTGTTAGGGAATATTTTACTTCCAAATATAAGACTTTCTAGCGTAAATTTAAATTTAGTCAGATTCCAATGCGAATAGCGAACAACAAATGAAAAAAAAAAGTACTTAGCAATTCATGCGAAGTTTGATAACTGAGATCTCTAGTAAGCTCATTTTATGAAATTTCTGAGAAGTTAATCGAATATTGAGATGTTTTTGAACAATTTAGCTAAAAAAGAAAACACTACTTGATTAAAGGATCAAATTAAGATAGATTCTGATCTTAAAATATCACCAATTTTTTTAATGATAATTACATATAGCTCACTGATCAAACGCTCTTGCATTAACGATGAACGAGGCCAATTAAATTGCTATACTTGTGTGATATAAAAGTAATGACACATCAATAAGAACAAAAAAATATTTAATTTTTCTTGTCTTTTATGAATTATGAATAATGTTTAGGTACTCCATTTTTTATATAATTGTCCGACAAAAAATATGGGAAAGTAAAGACATTTTGCAAGTTATAATAAGTCAAGGGACATGCTATATTTTCTTAGGAAAATGAAGTGACATATAACATTAATAATTAAAATTGGTAATTCAGTAAGTTTGTCTCATTTTCTTTTCTATTTTGTCTCTTCTTGACAATGATATATATGCATGCATGTCAACAACATCTTACCAGCCTTTCCAAATAAGAATATTTTCATTTTAATTTATTTATTTGATTTTGATTCAATATGATTATTTTTTAAAAATCACTATTATATGTTATATTAAACTAAAGATATGTGATATGTGATTTAAAGAATTATTATAAAATGTTTGGTAATTAAAGAATAAAATAAGATAATGACACAATTAAATTGAATAAATTGTTATATAAAATGAGATTTTTCATCATAATATAATAATATATTTTATGATATAATATAATAAAAAAATAAACATTATATTTAAACTAACAATACAATAAGTAATACTTAAAAACCAACTGCAAGTAAATCACTGATTAATTTGAATTCACATCAAATAAGATTTATTTAAAGATAACGTTATTTATTACGATTTGTTTGTACTCAAGGCTCTCAGAAAAGTTTGAAGTCAGTCAAAAGCTATTGATTGTAGCCAGTGATCATAGTGACATAACATTTTTATTATTTATTCAATTGTCTAATATGAATACATCAGCCACCTCAGGATATCTAAAACTCACTTTTTTCTTGAATTTTCCACTTTGGCTTCTACAAATTGAAGAACAATTATCTTCTCTTTGATCTTTAATTACTTCAACAACTTCACTAGTACTACAACTATTATTTTTTTGATAGCTACTAATAATTTCAACATTATTAGTACTACCATTATTGTAAGATAATAATAGTCCTCCAAGTGAAGGATAAACTTTATTAGAGGATTGTTTATTAGACCCTGGGTGAAGCCAATATACATTCCTCTAATGTCACAAAATCATTTTTACTACTATTAGTAGCATCCTTCAAGAATTTATTCTTCTTCTGATGATCATGATGATGTTGATTTTGTCTTTTTTTCTTCTTCATTGATGCCCAAAGGCATTTTAAACTAATTTGTCCAAACCCACAAAGAGTACTTGCACCCATGACTTGTAGAAGAAGAAGAAAAATCAAGAATTTGTATCTATAGAAAGTAATTGAGAAAGGGTAAGTTTTATATGGATGATTAATAGTGATATATAGTTTTTCTCAACCTAGGAATCTAGAAAAGAAATTTGATTAGGCTATGTTTTTACCCTACAGAAAAAGATATTGTTTTTCCTTGGAGGTATCAATAATACCCAAAATGAATGATGAGAAACATAGAACTTGATAATAACAAGGACAAGACTCATAAATGTTGGTTGCATTAGTGCATCGACTTACTTATAATCTCATCGAAAAGCTTAAATTGTTATACATACAATATACACTTTTATTTACTTAATGTAAAGAAGCTGACAACTTAGCTTCAACTCACAGCTCAAGATGACTAAAATTTGTGCATTACTATGATACTCTCCTTGTACTATGGAGATATACTTTTCTTGTTTCTTTTCTAGGTGCAATCAAAATTGATGAATATTCCAAGGAACATAGTTTATCAAACAAATAAAAGTACAGAATCACCACATATATATTAGCTCTCTAAAGAAAAACGATGATGGGACTCGTAGACGCATGCATACATAACACCAACACTATGAAACGATAGCTCAGTCGATGAAAACCACAATCTACAAATAAATCAAATAGTGAAAACACAGCAGAAGAATGTTTGCACACTCGATGAGTCCAACTGTTTAGCACAATACACTTCATTGATCAGCTGATGGGTTTGTCAGCAACTCAAGTGATTTTTTGAGGTAATCTACAGCGATAGAGACATCATCAAATGCCAGAGCTCCGACAGCAAACCTTGCAGCCTTGTGTGCTTCAGCTATTTTCTCCGGAGGGGGCTGGTAATTGCTGTCGTATGCGTATGTTTTCGCTGGAGCAGCTGCAACTTCTGGTGCAGACCCATTTCTGTCATTTGAGTTGTATTGAGCGCTTGATGGATAGTTTGCAGTGTTAGATGGAGGCAATGTGGAATACGAAGCATCCGCACCTTGGTAGTAAGAAGGGTAATGCGATGGTGCAGAAGGAAGACTACTCTCGGAAAAGCTAGGATACGACTGGAAATTGGGGTATTGTGAAGGGTAGTGCGGCTGCGACAAGTGCGACTGTGGTTCTTGCGTATAAGGTTGATGGTGATACGGCTGGGAGTAAGAAGAATTTTCAGATGCATCACCGGGTGGAGGCTGCTGAAAATTATGAGAAGGATACTCACCACTAGGATAGGAAGGAGGTGATGGAGGGAAATGTGAAGGAGGTGACTGTGTGGTCGATGCCGAAGGCGATGGAGGGATGTGTGAATGAGGTGGTGGTGGGGTGGTTGCTGGAGGAGACGGTCTTGCAGGTAATGGTGCACTGTCATACATGTGATTGGACGAATCTGATTCTGGTTCAGGTTTGATGAATGAATCAGTTCCACTAGATGGAAGATCCTGCAACAATGCCACAGGCAGTTAGCAACAATAGCTTGCAATTATATATTTTGATGAAGTAATGTGTTTCATAGACAGGCATCAAGACATGCAAAGTTACAGGAGGCTAATATTACTAAAGAAAAAAAGTGTAGGAGAACATTGTTTATCCAAAATAAAATGTCCCAATCAAGAACTGAAATGATATAAAATCCAAAAACTGTACTAAACTAATTAGTGGGACAACATTGTCTAACAAAAGAAATGAACTAAACATTAGCTTTAGTAATAGCTTGCAATTACTATGTCTTCTGATGCTCTTGAAAGGAACTAATTATTTCAAGCAAGAAATCTAAGCAATTTAACAGCCACATGTTCAAAGCTCAAAACTCAAAATTATTTTTTTTTATGACAAGGGAAATCCGCAGCCGCTAGCCTTTGGATGCGCACCGGGTTAAACCCCCACTTCTATGCAATAACTCGCAAACCACATAGGAGAGGTGACCCGCACTAGACAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCTAACCCCTTGCTTTCGCTGGCAAAGGGTTTCGAACTTGAGACCTCCAACATGAAAGTCCCAAGCTCAAACCACTGGGCTGGGCCCCCGAAGGATGCTCAAAACTCAAAAATATTAAAGTGTTAACAGGGAAACACACACTAAAGTAAGAGCCCGTCATTGGGCCTAAAAACAAGAAACTTTGAAGGTCTACATTAAGGCTTTCCTTTAAATGACAGTATTATAAGATCTTTCCAATTACACTTCAAAAAGGACAGTAGTAGCCCCCCATCTGTCCCATTGATTTCCATCTACTTTCTCCAGAAAGAAAGGTCACATTCAAACTTATCAATAACGAAAGGTCTGTTTCCACAATTGCAATAATTATTCAGTGCAACATACGAGTTACGACCATATGTGTTACTTGAGCTGGGGGTCTACGGGAAACAGCTTCTCTACCTTCACGAGGTAGGAGTAAGGCTACGTACACACCACCCTCCCCAGATCTCACTTGTGGGATTACACTAGTTATGCTGTTGTTGTAACATGTGACCATAACTACTCTGCCTCCTAAAACTTTTTGAGAAAGAATAATATACTAGGCAACAAATTACGACAAGCATGGAACCTACATAGGTATTACTTGGTACACTGGTAAACTCTGAAGTATCTCCTTCATCACCAGGAGGGCCTGGTATAGGCTTCCTTCCTTCTTTCAAAGCTTTTCTTATGTCTGCTGCCTTCCACGCTGCATACTTCTGCTTCTGCTCAAGCTGATAATAAATATAAGAGGTCAACCAATCTGGCAAGCAGAGCCCATGTCACCAAACATATTTTCTTATACATATAAAATACATGTGACCATACAGATGAAAAGAAATAATGTATTTTCATGTATCATCATAGAAAAGTAAATAAAAGCAAAAGGAGAGAAAAAAGTTGATCAAAGCTTGTCACAATATAATCGAAACTCACATCAGGCTGGAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAAAATTTAAATAAACTTTCTTTGAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................AAAAAAAAAAAAAAAAATGGGGGGGGGGGGGGGGGGCCCCCTTTCCCCCAATAGGGGGGTAAAAAAAATTTCGGGGGGGGTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E553151" ref_strand="-" ref_description="SGN-E553151 [cTSB-1-P15]">
      <seq>ctttttttttaaaaagggccccccaaattttatttaactcccctttagggggaaagggggccccccccccccccccaagtttttttttttttttttttttttttttttttttttttttttttttttttactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcggaggtctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83625" stop="25893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28546" g_stop="28529" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.722"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28528" i_stop="27407" i_length="1122">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27406" g_stop="27298" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="127" r_length="109" r_score="0.625"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27297" i_stop="26575" i_length="723">
            <donor d_prob="0.000" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26574" g_stop="26193" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="509" r_length="382" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E553151" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553151" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28546" e_stop="28529"/>
          <exon e_start="27406" e_stop="27298"/>
          <exon e_start="26574" e_stop="26193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTTAGAATTTGGTATGCTTTCTTTAATTTGTATTCAAATCACTTATGTATAATATCAATATTTATATTTATTAAAAATTTCATGTTGCATGGTTTATGAATCTTGTATTTGTCCCTAATTTGTATTCATCCAAATGTATGTCAACTAGTTATGTATTTTATTTATAAGAAGAACAACTTTCTATTAGTTTATTTGTATTCGAATACAAATACAAATAATAGACATATTGGAATGAATACGACTTAGAAAAGGAAACAAGATTTTGAAAAGAAAAATAAATACATAGTGAAAATATATATGAATACAAATGTATTTCTTAAATAGCTACATTTTATTTGACATACATATTGGAATGAATACAAACTAACAAAGGTATGTCAACTTGAATTTGATATTTTTTTCTAATTTGTATTTATTCTAAAGATATGTCAACTAGTTATGCGTTTTATTTAAGAATGAGTACACCAAATATTCAATTATTTCTTTTCAATTTTATATTTCATTCACTTTTTCATCATACTAATTTTTTGTATTTTATATATTATTATACAAAATTCTAAATAAAAACTAAAATAAATAGAAATACAAATAAAATACATATTGAAATGAATACATATAGGATTNNNGAANAAAAAATTAACTATATANGGAAAAAATATATGAAAATANAAATATATTTCTTAAATGACTATATAAATAAATTCNNCATTACTATTGAAATGAATACAAACTAATAAAAAACTATTATAAATATAACTACAATATATTGTANAATGAACATAATTTTAAAAAGGTTAAATCCTGGAAAAAAAAAAAACACAATTTAAATTTAATTTGAACATGTTACTGGATCAAAAAATAAAAATGCTTGCCTTTTTTGAAAATACCCCCCCTAAATCCCCCCCTTNGGGTACTAANAAACTTAATTCCTTNNCATNACNTCANTNACTAAATTTTCCCTACCAANTCAACAGGCCTCTTTCCCAAAAATTCAACATTGGCACACCGAACTCCCTAAAGCGCACACCAAAAATTCGCATTTAAAACCTTCCCCAACTCAAATNCAACCTAACTTCTCCTAAATAACCCCTTGNTCTCCTAAAAAATCGTCCCTCAACCTCCACGTCCCAGAGNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGCGATGAAGCATCACCTCTCCAACGTCCTTTTTCATGATGTTTCCACACTCTACAACATCCTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</genome_strand>
        <mrna_strand>CTTTTTTTTTAAAAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCAAATTTTATTTAACTCCCCTTTAGGGGGAAAGGGGGCCCCCCCCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E555084" ref_strand="-" ref_description="SGN-E555084 [cTSC-6-F7]">
      <seq>ttttttttttaaacccccccccccgaaaaaaatatcccccccccctggggaagggggggcccccccccccccccccccttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaccccaacaactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83622" stop="25903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34185" g_stop="34104" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.467"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34103" i_stop="29680" i_length="4424">
            <donor d_prob="0.438" d_score="0.47"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29679" g_stop="29659" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="103" r_length="21" r_score="0.762"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29658" i_stop="29023" i_length="636">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29022" g_stop="28989" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="137" r_length="34" r_score="0.706"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28988" i_stop="28564" i_length="425">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28563" g_stop="28529" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="172" r_length="35" r_score="0.686"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28528" i_stop="26584" i_length="1945">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26583" g_stop="26203" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="553" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E555084" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34185" e_stop="34104"/>
          <exon e_start="29679" e_stop="29659"/>
          <exon e_start="29022" e_stop="28989"/>
          <exon e_start="28563" e_stop="28529"/>
          <exon e_start="26583" e_stop="26203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGATGTGAGTTTCGATTATATTGTGACAAGCTTTGATCAACTTTTTTCTCTCCTTTTGCTTTTATTTACTTTTCTATGATGATACATGAAAATACATTATTTCTTTTCATCTGTATGGTCACATGTATTTTATATGTATAAGAAAATATGTTTGGTGACATGGGCTCTGCTTGCCAGATTGGTTGACCTCTTATATTTATTATCAGCTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTATGTAGGTTCCATGCTTGTCGTAATTTGTTGCCTAGTATATTATTCTTTCTCAAAAAGTTTTAGGAGGCAGAGTAGTTATGGTCACATGTTACAACAACAGCATAACTAGTGTAATCCCACAAGTGAGATCTGGGGAGGGTGGTGTGTACGTAGCCTTACTCCTACCTCGTGAAGGTAGAGAAGCTGTTTCCCGTAGACCCCCAGCTCAAGTAACACATATGGTCGTAACTCGTATGTTGCACTGAATAATTATTGCAATTGTGGAAACAGACCTTTCGTTATTGATAAGTTTGAATGTGACCTTTCTTTCTGGAGAAAGTAGATGGAAATCAATGGGACAGATGGGGGGCTACTACTGTCCTTTTTGAAGTGTAATTGGAAAGATCTTATAATACTGTCATTTAAAGGAAAGCCTTAATGTAGACCTTCAAAGTTTCTTGTTTTTAGGCCCAATGACGGGCTCTTACTTTAGTGTGTGTTTCCCTGTTAACACTTTAATATTTTTGAGTTTTGAGCATCCTTCGGGGGCCCAGCCCAGTGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTAGCCTTCTGGGTCGAGCTCGTCGCACCAAGCTTGTCTAGTGCGGGTCACCTCTCCTATGTGGTTTGCGAGTTATTGCATAGAAGTGGGGGTTTAACCCGGTGCGCATCCAAAGGCTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAATAATTTTGAGTTTTGAGCTTTGAACATGTGGCTGTTAAATTGCTTAGATTTCTTGCTTGAAATAATTAGTTCCTTTCAAGAGCATCAGAAGACATAGTAATTGCAAGCTATTACTAAAGCTAATGTTTAGTTCATTTCTTTTGTTAGACAATGTTGTCCCACTAATTAGTTTAGTACAGTTTTTGGATTTTATATCATTTCAGTTCTTGATTGGGACATTTTATTTTGGATAAACAATGTTCTCCTACACTTTTTTTCTTTAGTAATATTAGCCTCCTGTAACTTTGCATGTCTTGATGCCTGTCTATGAAACACATTACTTCATCAAAATATATAATTGCAAGCTATTGTTGCTAACTGCCTGTGGCATTGTTGCAGGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATCAATGAAGTGTATTGTGCTAAACAGTTGGACTCATCGAGTGTGCAAACATTCTTCTGCTGTGTTTTCACTATTTGATTTATTTGTAGATTGTGGTTTTCATCGACTGAGCTATCGTTTCATAGTGTTGGTGTTATGTATGCATGCGTCTACGAGTCCCATCATCGTTTTTCTTTAGAGAGCTAATATATATGTGGTGATTCTGTACTTTTATTTGTTTGATAAACTATGTTCCTTGGAATATTCATCAATTTTGATTGCACCTAGAAAAGAAACAAGAAAAGTATATCTCCATAGTACAAGGAGAGTATCATAGTAATGCACAAATTTTAGTCATCTTGAGCTGTGAGTTGAAGCTAAGTTGTCAGCTTCTTTACATTAAGTAAATAAAAGTGTATATTGTATGTATAACAATTTAAGCTTTTCGATGAGATTATAAGTAAGTCGATGCACTAATGCAACCAACATTTATGAGTCTTGTCCTTGTTATTATCAAGTTCTATGTTTCTCATCATTCATTTTGGGTATTATTGATACCTCCAAGGAAAAACAATATCTTTTTCTGTAGGGTAAAAACATAGCCTAATCAAATTTCTTTTCTAGATTCCTAGGTTGAGAAAAACTATATATCACTATTAATCATCCATATAAAACTTACCCTTTCTCAATTACTTTCTATAGATACAAATTCTTGATTTTTCTTCTTCTTCTACAAGTCATGGGTGCAAGTACTCTTTGTGGGTTTGGACAAATTAGTTTAAAATGCCTTTGGGCATCAATGAAGAAGAAAAAAAGACAAAATCAACATCATCATGATCATCAGAAGAAGAATAAATTCTTGAAGGATGCTACTAATAGTAGTAAAAATGATTTTGTGACATTAGAGGAATGTATATTGGCTTCACCCAGGGTCTAATAAACAATCCTCTAATAAAGTTTATCCTTCACTTGGAGGACTATTATTATCTTACAATAATGGTAGTACTAATAATGTTGAAATTATTAGTAGCTATCAAAAAAATAATAGTTGTAGTACTAGTGAAGTTGTTGAAGTAATTAAAGATCAAAGAGAAGATAATTGTTCTTCAATTTGTAGAAGCCAAAGTGGAAAATTCAAGAAAAAAGTGAGTTTTAGATATCCTGAGGTGGCTGATGTATTCATATTAGACAATTGAATAAATAATAAAAATGTTATGTCACTATGATCACTGGCTACAATCAATAGCTTTTGACTGACTTCAAACTTTTCTGAGAGCCTTGAGTACAAACAAATCGTAATAAATAACGTTATCTTTAAATAAATCTTATTTGATGTGAATTCAAATTAATCAGTGATTTACTTGCAGTTGGTTTTTAAGTATTACTTATTGTATTGTTAGTTTAAATATAATGTTTATTTTTTTATTATATTATATCATAAAATATATTATTATATTATGATGAAAAATCTCATTTTATATAACAATTTATTCAATTTAATTGTGTCATTATCTTATTTTATTCTTTAATTACCAAACATTTTATAATAATTCTTTAAATCACATATCACATATCTTTAGTTTAATATAACATATAATAGTGATTTTTAAAAAATAATCATATTGAATCAAAATCAAATAAATAAATTAAAATGAAAATATTCTTATTTGGAAAGGCTGGTAAGATGTTGTTGACATGCATGCATATATATCATTGTCAAGAAGAGACAAAATAGAAAAGAAAATGAGACAAACTTACTGAATTACCAATTTTAATTATTAATGTTATATGTCACTTCATTTTCCTAAGAAAATATAGCATGTCCCTTGACTTATTATAACTTGCAAAATGTCTTTACTTTCCCATATTTTTTGTCGGACAATTATATAAAAAATGGAGTACCTAAACATTATTCATAATTCATAAAAGACAAGAAAAATTAAATATTTTTTTGTTCTTATTGATGTGTCATTACTTTTATATCACACAAGTATAGCAATTTAATTGGCCTCGTTCATCGTTAATGCAAGAGCGTTTGATCAGTGAGCTATATGTAATTATCATTAAAAAAATTGGTGATATTTTAAGATCAGAATCTATCTTAATTTGATCCTTTAATCAAGTAGTGTTTTCTTTTTTAGCTAAATTGTTCAAAAACATCTCAATATTCGATTAACTTCTCAGAAATTTCATAAAATGAGCTTACTAGAGATCTCAGTTATCAAACTTCGCATGAATTGCTAAGTACTTTTTTTTTTCATTTGTTGTTCGCTATTCGCATTGGAATCTGACTAAATTTAAATTTACGCTAGAAAGTCTTATATTTGGAAGTAAAATATTCCCTAACAAAAACGATTTCATATATAACCAGAGAGACTTAAACTCAAAATGTCTATTTACAAATAAATTAAATACTTACCACTCAACTATAATTCGATGTTGGTCATCATTTATTTTCTGTCTCACTGTAAATCATTCTCTAAGGAACAAAATTGTAGTGGGACTTTGGGCAAAGTATTCATGGTTTTGGTTTTGGATTTATCAGGCAAAATGAAAACAGGGCCCTAGTCTTGTACTCTTATATCCACTACACAACTAGTAATTAAAAGTAAAAATTAGTAAACTAATCAAAATAAATAACATATTTAATAAAAATATTTATACTTTATAAATATTAGCAATAATATCAAAAATGTCGTTATTTTAAAAAATTTATGTGTCCCAATTTTCTTCCTATTTTATCTCTCTTTTTCAATTAATTCTATATATCCTTTTTTTAGAAAAAAAAATTATTCTCTCTCATATTTTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTATCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAATTGCAAGTATTTTTTTGCCATATATTTTGTTTGTTTTTTTAGTTCAAAATTGAATCAACAAGAAATCCTTTGATTAACGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAGAATATTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGTTGAATCTAAGAGGCTTACTAGAGGTATTCATCTTAATCAACTAATTTCTGGTGACTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTATATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAAAGGGTAAGAACATTTGCAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTGGTATGCTTTCTTTAATTTGTATTCAAATCACTTATGTATAATATCAATATTTATATTTATTAAAAATTTCATGTTGCATGGTTTATGAATCTTGTATTTGTCCCTAATTTGTATTCATCCAAATGTATGTCAACTAGTTATGTATTTTATTTATAAGAAGAACAACTTTCTATTAGTTTATTTGTATTCGAATACAAATACAAATAATAGACATATTGGAATGAATACGACTTAGAAAAGGAAACAAGATTTTGAAAAGAAAAATAAATACATAGTGAAAATATATATGAATACAAATGTATTTCTTAAATAGCTACATTTTATTTGACATACATATTGGAATGAATACAAACTAACAAAGGTATGTCAACTTGAATTTGATATTTTTTTCTAATTTGTATTTATTCTAAAGATATGTCAACTAGTTATGCGTTTTATTTAAGAATGAGTACACCAAATATTCAATTATTTCTTTTCAATTTTATATTTCATTCACTTTTTCATCATACTAATTTTTTGTATTTTATATATTATTATACAAAATTCTAAATAAAAACTAAAATAAATAGAAATACAAATAAAATACATATTGAAATGAATACATATAGGATTNNNGAANAAAAAATTAACTATATANGGAAAAAATATATGAAAATANAAATATATTTCTTAAATGACTATATAAATAAATTCNNCATTACTATTGAAATGAATACAAACTAATAAAAAACTATTATAAATATAACTACAATATATTGTANAATGAACATAATTTTAAAAAGGTTAAATCCTGGAAAAAAAAAAAACACAATTTAAATTTAATTTGAACATGTTACTGGATCAAAAAATAAAAATGCTTGCCTTTTTTGAAAATACCCCCCCTAAATCCCCCCCTTNGGGTACTAANAAACTTAATTCCTTNNCATNACNTCANTNACTAAATTTTCCCTACCAANTCAACAGGCCTCTTTCCCAAAAATTCAACATTGGCACACCGAACTCCCTAAAGCGCACACCAAAAATTCGCATTTAAAACCTTCCCCAACTCAAATNCAACCTAACTTCTCCTAAATAACCCCTTGNTCTCCTAAAAAATCGTCCCTCAACCTCCACGTCCCAGAGNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGCGATGAAGCATCACCTCTCCAACGTCCTTTTTCATGATGTTTCCACACTCTACAACATCCTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</genome_strand>
        <mrna_strand>TTTTTTTTTTAAACCCCCCCCCCCGAAAAAAATATCCCCCCCCCCTGGGGAAGGGGGGGCCCCCCCCCCCCCCCCCCCTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAACAACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E554989" ref_strand="-" ref_description="SGN-E554989 [cTSC-6-B10]">
      <seq>ttttttttttaaaccccccccccggaattttatattttctcttaaaggggggggggggggcccccccccccccccccntttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaccccaacaactcaaagaaagtttatttaaattttcaaataccagaaattacaaacgcacataaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtagaaattggagagaatagagtgtacgcagatgttaacatccatcgggaaccttaattttacattgcttaggcagattcattgcagcttcaggactgattccaaatttccccaactcagatttctggttgcacatacactgtaaatcagccttgcgtagcactgcgcaacaatccggcgtcggtttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83622" stop="25903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34183" g_stop="34104" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.400"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34103" i_stop="29677" i_length="4427">
            <donor d_prob="0.438" d_score="0.40"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29676" g_stop="29662" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="95" r_length="15" r_score="0.867"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29661" i_stop="29023" i_length="639">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29022" g_stop="28989" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="129" r_length="34" r_score="0.706"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28988" i_stop="28575" i_length="414">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.67"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28574" g_stop="28529" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="175" r_length="46" r_score="0.674"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28528" i_stop="26584" i_length="1945">
            <donor d_prob="0.900" d_score="0.67"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26583" g_stop="26203" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="556" r_length="381" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E554989" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554989" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34183" e_stop="34104"/>
          <exon e_start="29676" e_stop="29662"/>
          <exon e_start="29022" e_stop="28989"/>
          <exon e_start="28574" e_stop="28529"/>
          <exon e_start="26583" e_stop="26203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGATGTGAGTTTCGATTATATTGTGACAAGCTTTGATCAACTTTTTTCTCTCCTTTTGCTTTTATTTACTTTTCTATGATGATACATGAAAATACATTATTTCTTTTCATCTGTATGGTCACATGTATTTTATATGTATAAGAAAATATGTTTGGTGACATGGGCTCTGCTTGCCAGATTGGTTGACCTCTTATATTTATTATCAGCTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTATGTAGGTTCCATGCTTGTCGTAATTTGTTGCCTAGTATATTATTCTTTCTCAAAAAGTTTTAGGAGGCAGAGTAGTTATGGTCACATGTTACAACAACAGCATAACTAGTGTAATCCCACAAGTGAGATCTGGGGAGGGTGGTGTGTACGTAGCCTTACTCCTACCTCGTGAAGGTAGAGAAGCTGTTTCCCGTAGACCCCCAGCTCAAGTAACACATATGGTCGTAACTCGTATGTTGCACTGAATAATTATTGCAATTGTGGAAACAGACCTTTCGTTATTGATAAGTTTGAATGTGACCTTTCTTTCTGGAGAAAGTAGATGGAAATCAATGGGACAGATGGGGGGCTACTACTGTCCTTTTTGAAGTGTAATTGGAAAGATCTTATAATACTGTCATTTAAAGGAAAGCCTTAATGTAGACCTTCAAAGTTTCTTGTTTTTAGGCCCAATGACGGGCTCTTACTTTAGTGTGTGTTTCCCTGTTAACACTTTAATATTTTTGAGTTTTGAGCATCCTTCGGGGGCCCAGCCCAGTGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTAGCCTTCTGGGTCGAGCTCGTCGCACCAAGCTTGTCTAGTGCGGGTCACCTCTCCTATGTGGTTTGCGAGTTATTGCATAGAAGTGGGGGTTTAACCCGGTGCGCATCCAAAGGCTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAATAATTTTGAGTTTTGAGCTTTGAACATGTGGCTGTTAAATTGCTTAGATTTCTTGCTTGAAATAATTAGTTCCTTTCAAGAGCATCAGAAGACATAGTAATTGCAAGCTATTACTAAAGCTAATGTTTAGTTCATTTCTTTTGTTAGACAATGTTGTCCCACTAATTAGTTTAGTACAGTTTTTGGATTTTATATCATTTCAGTTCTTGATTGGGACATTTTATTTTGGATAAACAATGTTCTCCTACACTTTTTTTCTTTAGTAATATTAGCCTCCTGTAACTTTGCATGTCTTGATGCCTGTCTATGAAACACATTACTTCATCAAAATATATAATTGCAAGCTATTGTTGCTAACTGCCTGTGGCATTGTTGCAGGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATCAATGAAGTGTATTGTGCTAAACAGTTGGACTCATCGAGTGTGCAAACATTCTTCTGCTGTGTTTTCACTATTTGATTTATTTGTAGATTGTGGTTTTCATCGACTGAGCTATCGTTTCATAGTGTTGGTGTTATGTATGCATGCGTCTACGAGTCCCATCATCGTTTTTCTTTAGAGAGCTAATATATATGTGGTGATTCTGTACTTTTATTTGTTTGATAAACTATGTTCCTTGGAATATTCATCAATTTTGATTGCACCTAGAAAAGAAACAAGAAAAGTATATCTCCATAGTACAAGGAGAGTATCATAGTAATGCACAAATTTTAGTCATCTTGAGCTGTGAGTTGAAGCTAAGTTGTCAGCTTCTTTACATTAAGTAAATAAAAGTGTATATTGTATGTATAACAATTTAAGCTTTTCGATGAGATTATAAGTAAGTCGATGCACTAATGCAACCAACATTTATGAGTCTTGTCCTTGTTATTATCAAGTTCTATGTTTCTCATCATTCATTTTGGGTATTATTGATACCTCCAAGGAAAAACAATATCTTTTTCTGTAGGGTAAAAACATAGCCTAATCAAATTTCTTTTCTAGATTCCTAGGTTGAGAAAAACTATATATCACTATTAATCATCCATATAAAACTTACCCTTTCTCAATTACTTTCTATAGATACAAATTCTTGATTTTTCTTCTTCTTCTACAAGTCATGGGTGCAAGTACTCTTTGTGGGTTTGGACAAATTAGTTTAAAATGCCTTTGGGCATCAATGAAGAAGAAAAAAAGACAAAATCAACATCATCATGATCATCAGAAGAAGAATAAATTCTTGAAGGATGCTACTAATAGTAGTAAAAATGATTTTGTGACATTAGAGGAATGTATATTGGCTTCACCCAGGGTCTAATAAACAATCCTCTAATAAAGTTTATCCTTCACTTGGAGGACTATTATTATCTTACAATAATGGTAGTACTAATAATGTTGAAATTATTAGTAGCTATCAAAAAAATAATAGTTGTAGTACTAGTGAAGTTGTTGAAGTAATTAAAGATCAAAGAGAAGATAATTGTTCTTCAATTTGTAGAAGCCAAAGTGGAAAATTCAAGAAAAAAGTGAGTTTTAGATATCCTGAGGTGGCTGATGTATTCATATTAGACAATTGAATAAATAATAAAAATGTTATGTCACTATGATCACTGGCTACAATCAATAGCTTTTGACTGACTTCAAACTTTTCTGAGAGCCTTGAGTACAAACAAATCGTAATAAATAACGTTATCTTTAAATAAATCTTATTTGATGTGAATTCAAATTAATCAGTGATTTACTTGCAGTTGGTTTTTAAGTATTACTTATTGTATTGTTAGTTTAAATATAATGTTTATTTTTTTATTATATTATATCATAAAATATATTATTATATTATGATGAAAAATCTCATTTTATATAACAATTTATTCAATTTAATTGTGTCATTATCTTATTTTATTCTTTAATTACCAAACATTTTATAATAATTCTTTAAATCACATATCACATATCTTTAGTTTAATATAACATATAATAGTGATTTTTAAAAAATAATCATATTGAATCAAAATCAAATAAATAAATTAAAATGAAAATATTCTTATTTGGAAAGGCTGGTAAGATGTTGTTGACATGCATGCATATATATCATTGTCAAGAAGAGACAAAATAGAAAAGAAAATGAGACAAACTTACTGAATTACCAATTTTAATTATTAATGTTATATGTCACTTCATTTTCCTAAGAAAATATAGCATGTCCCTTGACTTATTATAACTTGCAAAATGTCTTTACTTTCCCATATTTTTTGTCGGACAATTATATAAAAAATGGAGTACCTAAACATTATTCATAATTCATAAAAGACAAGAAAAATTAAATATTTTTTTGTTCTTATTGATGTGTCATTACTTTTATATCACACAAGTATAGCAATTTAATTGGCCTCGTTCATCGTTAATGCAAGAGCGTTTGATCAGTGAGCTATATGTAATTATCATTAAAAAAATTGGTGATATTTTAAGATCAGAATCTATCTTAATTTGATCCTTTAATCAAGTAGTGTTTTCTTTTTTAGCTAAATTGTTCAAAAACATCTCAATATTCGATTAACTTCTCAGAAATTTCATAAAATGAGCTTACTAGAGATCTCAGTTATCAAACTTCGCATGAATTGCTAAGTACTTTTTTTTTTCATTTGTTGTTCGCTATTCGCATTGGAATCTGACTAAATTTAAATTTACGCTAGAAAGTCTTATATTTGGAAGTAAAATATTCCCTAACAAAAACGATTTCATATATAACCAGAGAGACTTAAACTCAAAATGTCTATTTACAAATAAATTAAATACTTACCACTCAACTATAATTCGATGTTGGTCATCATTTATTTTCTGTCTCACTGTAAATCATTCTCTAAGGAACAAAATTGTAGTGGGACTTTGGGCAAAGTATTCATGGTTTTGGTTTTGGATTTATCAGGCAAAATGAAAACAGGGCCCTAGTCTTGTACTCTTATATCCACTACACAACTAGTAATTAAAAGTAAAAATTAGTAAACTAATCAAAATAAATAACATATTTAATAAAAATATTTATACTTTATAAATATTAGCAATAATATCAAAAATGTCGTTATTTTAAAAAATTTATGTGTCCCAATTTTCTTCCTATTTTATCTCTCTTTTTCAATTAATTCTATATATCCTTTTTTTAGAAAAAAAAATTATTCTCTCTCATATTTTTATCTTTTCAAATTGTTAATTCTCTCTCCCATTTAATTTTTTTTATCTCTCATGGTTATCTTTTCTGATTTTCCTCCAACATTCAAATTGCAAGTATTTTTTTGCCATATATTTTGTTTGTTTTTTTAGTTCAAAATTGAATCAACAAGAAATCCTTTGATTAACGTATCTCTAATCTTTATCCTATTTTCAGATTTCTTTTCTAATTTTATTTTTGTTTAAATCTTAAAAGAATATTGTTTGTATTTTTCAATTTCCGTTATGATTTACTCTCCAATGGTTGAATCTAAGAGGCTTACTAGAGGTATTCATCTTAATCAACTAATTTCTGGTGACTTTTCATCCTTTAATTTATTTATTATTTAACAAATAGTATATAATGTATGATCCGCTGCTAAAATGAGGGAAGAAAAAGGGTAAGAACATTTGCAAGACTCATTGGTGTGCAAAACCTTCCTCAAATTCAGAACGCAAATGTAGAATCTTTGTCTACTCGTGAGGATCTTGAAAAAGACGACGAAGATCGAATAGTTGTCGAACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTGGTATGCTTTCTTTAATTTGTATTCAAATCACTTATGTATAATATCAATATTTATATTTATTAAAAATTTCATGTTGCATGGTTTATGAATCTTGTATTTGTCCCTAATTTGTATTCATCCAAATGTATGTCAACTAGTTATGTATTTTATTTATAAGAAGAACAACTTTCTATTAGTTTATTTGTATTCGAATACAAATACAAATAATAGACATATTGGAATGAATACGACTTAGAAAAGGAAACAAGATTTTGAAAAGAAAAATAAATACATAGTGAAAATATATATGAATACAAATGTATTTCTTAAATAGCTACATTTTATTTGACATACATATTGGAATGAATACAAACTAACAAAGGTATGTCAACTTGAATTTGATATTTTTTTCTAATTTGTATTTATTCTAAAGATATGTCAACTAGTTATGCGTTTTATTTAAGAATGAGTACACCAAATATTCAATTATTTCTTTTCAATTTTATATTTCATTCACTTTTTCATCATACTAATTTTTTGTATTTTATATATTATTATACAAAATTCTAAATAAAAACTAAAATAAATAGAAATACAAATAAAATACATATTGAAATGAATACATATAGGATTNNNGAANAAAAAATTAACTATATANGGAAAAAATATATGAAAATANAAATATATTTCTTAAATGACTATATAAATAAATTCNNCATTACTATTGAAATGAATACAAACTAATAAAAAACTATTATAAATATAACTACAATATATTGTANAATGAACATAATTTTAAAAAGGTTAAATCCTGGAAAAAAAAAAAACACAATTTAAATTTAATTTGAACATGTTACTGGATCAAAAAATAAAAATGCTTGCCTTTTTTGAAAATACCCCCCCTAAATCCCCCCCTTNGGGTACTAANAAACTTAATTCCTTNNCATNACNTCANTNACTAAATTTTCCCTACCAANTCAACAGGCCTCTTTCCCAAAAATTCAACATTGGCACACCGAACTCCCTAAAGCGCACACCAAAAATTCGCATTTAAAACCTTCCCCAACTCAAATNCAACCTAACTTCTCCTAAATAACCCCTTGNTCTCCTAAAAAATCGTCCCTCAACCTCCACGTCCCAGAGNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGCGATGAAGCATCACCTCTCCAACGTCCTTTTTCATGATGTTTCCACACTCTACAACATCCTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</genome_strand>
        <mrna_strand>TTTTTTTTTTAAACCCCCCCCCCGGAATTTTATATTTTCTCTTAAAGGGGGGGGGGGGGGCCCCCCCCCCCCCCCCCNTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCAACAACTCAAAGAAAGTTTATTTAAATTTTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E221814" ref_strand="-" ref_description="SGN-E221814 [cLEL-10-O23]">
      <seq>agtgctacgcaaggctgatttacagtgtatgtgcaaccagaaatctgagttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttagtgcgtatgctagagaagtgttgggactaattaagaaaaaagagcatgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacattttttttttttatgtgcgtttgtaatttctggtatttgagaatttaaataaactttctttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25929" stop="26871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26229" g_stop="26571" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="361"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E221814" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26229" e_stop="26571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</genome_strand>
        <mrna_strand>AGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E722731" ref_strand="+" ref_description="SGN-E722731 [FC18AE12]">
      <seq>ttggggaaatttggaatcagtcctgaagctgcaatgaatctgcctaagcaatgtaaaattaaggttcccgatggatgttaacatctgcgtacactctattctctccaatttctacttgtgggattttaatgcgtatgctagataagtgttgggactaattaagaaaaaaaagcttgtatttttacctgattttgttttgaattgtttcgcttcactttgtgaagtttgacatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="25978" stop="26816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26278" g_stop="26516" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E722731" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26278" e_stop="26516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</genome_strand>
        <mrna_strand>TTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAATGCGTATGCTAGATAAGTGTTGGGACTAATTAAGAAAAAAAAGCTTGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E353041" ref_strand="+" ref_description="SGN-E353041 [cTOS-14-D9]">
      <seq>ttttttttttttttttttttttttttttttttccaaagaaagtttatttaaattctcaaataccagaaattacaaacgcacataaaaaaaaaaaaaatgtcaaacttcacaaagtgaagcgaaacaattcaaaacaaaatcaggtaaaaatacatgctcttttttcttaattagtcccaacacttctctagcatacgcactaaaatcccacaagtaaaaattggagagaataaagtgtacgcaaatgttaacatccatcgggaaccttaattttacattgcttaggcaaattcattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83622" stop="26006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28561" g_stop="28529" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28528" i_stop="26571" i_length="1958">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26570" g_stop="26306" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="300" r_length="267" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E353041" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28561" e_stop="28529"/>
          <exon e_start="26570" e_stop="26306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGTATTTATAGTTTTTTTTTAGAATTTGGTATGCTTTCTTTAATTTGTATTCAAATCACTTATGTATAATATCAATATTTATATTTATTAAAAATTTCATGTTGCATGGTTTATGAATCTTGTATTTGTCCCTAATTTGTATTCATCCAAATGTATGTCAACTAGTTATGTATTTTATTTATAAGAAGAACAACTTTCTATTAGTTTATTTGTATTCGAATACAAATACAAATAATAGACATATTGGAATGAATACGACTTAGAAAAGGAAACAAGATTTTGAAAAGAAAAATAAATACATAGTGAAAATATATATGAATACAAATGTATTTCTTAAATAGCTACATTTTATTTGACATACATATTGGAATGAATACAAACTAACAAAGGTATGTCAACTTGAATTTGATATTTTTTTCTAATTTGTATTTATTCTAAAGATATGTCAACTAGTTATGCGTTTTATTTAAGAATGAGTACACCAAATATTCAATTATTTCTTTTCAATTTTATATTTCATTCACTTTTTCATCATACTAATTTTTTGTATTTTATATATTATTATACAAAATTCTAAATAAAAACTAAAATAAATAGAAATACAAATAAAATACATATTGAAATGAATACATATAGGATTNNNGAANAAAAAATTAACTATATANGGAAAAAATATATGAAAATANAAATATATTTCTTAAATGACTATATAAATAAATTCNNCATTACTATTGAAATGAATACAAACTAATAAAAAACTATTATAAATATAACTACAATATATTGTANAATGAACATAATTTTAAAAAGGTTAAATCCTGGAAAAAAAAAAAACACAATTTAAATTTAATTTGAACATGTTACTGGATCAAAAAATAAAAATGCTTGCCTTTTTTGAAAATACCCCCCCTAAATCCCCCCCTTNGGGTACTAANAAACTTAATTCCTTNNCATNACNTCANTNACTAAATTTTCCCTACCAANTCAACAGGCCTCTTTCCCAAAAATTCAACATTGGCACACCGAACTCCCTAAAGCGCACACCAAAAATTCGCATTTAAAACCTTCCCCAACTCAAATNCAACCTAACTTCTCCTAAATAACCCCTTGNTCTCCTAAAAAATCGTCCCTCAACCTCCACGTCCCAGAGNCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTGCGATGAAGCATCACCTCTCCAACGTCCTTTTTCATGATGTTTCCACACTCTACAACATCCTTTGTTATATAAGATCGAAATTGATAAAGAAATTAAAAATTTAATTCAACTCAATCTCAAGAACGAGCTCTTAAGATAATGATTGTCCATGTTAGGATCGAATTCCCCACACACTTAACGAATGAAGAACACAAGAACTTTAGAGAGAAAGAGATGAGAGAGAAAGAGAGAAATCAATGTTTCGTGGTAACACTCCGTGAGTAAACTTCCACGGCGGTGGATATATATATTAATAAATGAGAGTATTTTAGGTTACAGAGAATAAATGGAGAATAAATATATGAACATTAATATATGACAGTACATCAAATATTAATCAAGCTCCACAACGTAACAGTCCATACTATATAAAGAGACTATATCATTTCTAAATAGCAGATGTAGAAACTCAAGACAAGCTTAACTGACAATGAGAATCATATAGTTGTCGGAGTCAAGATTAAGAGTTTGAAGAATCTAAATTGATTTATTTAAGGTTCATAAGTTAATATACATTTAAAAAAAATAATTTTCTAACTCAACATAGGATCTATACGAAAAAGCCAGTGAATTCGTCCGAACCCATAAATCCCTAACATTCCCAACTTACTAGGGATCGAGGCACAATTATTATAGTTGGTGCGTGTAAGAAAAAATACATTAACGAATAACCGAACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACAT--AAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAAAAATTGGAGAGAATAAAGTGTACGCAAATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAAATTCATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18]">
      <seq>aaattctaaaaaatcctataaatacaaaacaaactaatagaaaattgttcgcgatcttcgtcgtctttttcaagatcctcacgagtagacaaagattttacatttgcgttctgaatttgaggaaggttttgcacaccaatgagtcttgtaaatgttcttaccctctttcttccctcattttagcagcggatcatacattatacactatttgttaagtaataaataaattaaaggatgaaaaatcaccagaaattggttgattaagatgaatacctctagtaagtctcttggattcagtcattggagagtaaatcataacggaaattgaaaaatacaaacaacatttttttaagatttaaacaaaaataaaattagaaaagaaatctgaaaataggataaagactagagataccttaatcaaagggattcttgttgattcaattttggattaaaaaaacaacgaaaatatatggcaaaaaaaatttgcaacttgaatgttggaggaaaatcagaaaagataaccataagagagagaaaaaattaaatgggagagagaattaacaatttgaaaagataaatatgagagagaatatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="28230" stop="29438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28530" g_stop="29139" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28530" e_stop="29139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAAAAAAAAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGACAACTATTCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGCAAATGTTCTTACCCTTTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATATACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAGTCACCAGAAATTAGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTAGATTCAACCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAATATTCTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACGTTAATCAAAGGATTTCTTGTTGATTCAATTTTGAACTAAAAAAACAAACAAAATATATGGCAAAAAAATACTTGCAATTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATGAGAGATAAAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAAAATATGAGAGAGAATAATTTT</genome_strand>
        <mrna_strand>AAATTCT-AAAAAATCCTATAAATACAAAACAAACTAATAGAAAATTGTTCG---------CGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTTTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGTCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGACTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACGAAAATATATGGCAAAAAAA-ATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAGAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGAT--AAATATGAGAGAGAATATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18]">
      <seq>taaatacaaaacaaactaatagaaaattgttcgcgatcttcgtcgtctttttcaacatcctcacgagtagacaaagattttacatttgcgttctgaatttgaggaaggttttgcacaccaatgagtcttgtaaatgttcttaccctctttcttccctcattttagcagcggatcatacattatacactatttgttaagtaataaataaattaaaggatgaaaaatcaccagaaattggttgattaagatgaatacctctagtaagtctcttggattcagtcattggagagtaaatcataacggaaattgaaaaatacaaacaacatttttttaagatttaaacaaaaataaaattagaaaagaaatctgaaaataggataaagactagagataccttaatcaaagggattcttgttgattcaattttggattaaaaaaacaacgaaaatatatggcaaaaaaaatttgcaacttgaatgttggaggaaaatcagaaaagataaccataagagagagaaaaaattaaatgggagagagaattaacaatttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="28249" stop="29411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28549" g_stop="29111" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28549" e_stop="29111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACAAAACAAACTAATAGAAAATTGTTCGACAACTATTCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGCAAATGTTCTTACCCTTTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATATACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAGTCACCAGAAATTAGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTAGATTCAACCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAATATTCTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACGTTAATCAAAGGATTTCTTGTTGATTCAATTTTGAACTAAAAAAACAAACAAAATATATGGCAAAAAAATACTTGCAATTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATGAGAGATAAAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAA</genome_strand>
        <mrna_strand>TAAATACAAAACAAACTAATAGAAAATTGTTCG---------CGATCTTCGTCGTCTTTTTCAACATCCTCACGAGTAGACAAAGATTTTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGTCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGACTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACGAAAATATATGGCAAAAAAA-ATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAGAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E246739" ref_strand="+" ref_description="SGN-E246739 [cLEF-45-L21]">
      <seq>tgatcttccatctagtggaactgattcattcatcaaacctgaaccagaatcagattcgtccaatcacatgtatgacagtgcaccattacctgcaagaccgtctcctccagcaaccaccccaccaccacctcattcacacatccctccatcgccttcggcatcgaccacacagtcacctccttcacatttccctccatcacctccttcctatcctagtggtgagtatccttctcataattttcagcagcctccacccggtgatgcatctgaaaattcttcttactcccagccgtatcaccatcaaccttatacgcaagaaccacagtcgcacttgtcgcagccgcactacccttcacaataccccaatttccagtcgtatcctagcttttccgagagtagtcttccttctgcaccatcgcattacccttcttactaccaaggtgcggatgcttcgtattccacattgcctccatctaacactgcaaactatccatcaagcgctcaatacaactcaaatgacagaaatgggtctgcaccagaagttgcagctgctccagcgaaaacatacgcatacgacagcaattaccagccccctccggagaaaatagctgaagcacacaaggctgcaaggtttgctgtcggagctctggcatttgatgatgtctctatcgctgtagattacctcaaaaaatcacttgagttgctgacaaacccatcagctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="32924" stop="31601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32625" g_stop="31901" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E246739" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32625" e_stop="31901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATC</genome_strand>
        <mrna_strand>TGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E392026" ref_strand="+" ref_description="SGN-E392026 [TUS-24-M24]">
      <seq>atgatcttccatctagtggaactgattcattcatcaaacctgaaccagaatcagattcgtccaatcacatgtatgacagtgcaccattacctgcaagaccgtctcctccagcaaccaccccaccaccacctcattcacacatccctccatcgccttcggcatcgaccacacagtcacctccttcacatttccctccatcacctccttcctatcctagtggtgagtatccttctcataattttcagcagcctccacccggtgatgcatctgaaaattcttcttactcccagccgtatcaccatcaaccttatacgcaagaaccacagtcgcacttgtcgcagccgcactacccttcacaataccccaatttccagtcgtatcctagcttttccgagagtagtcttccttctgcaccatcgcattacccttcttactaccaaggtgcggatgcttcgtattccacattgcctccatctaacactgcaaactatccatcaagcgctcaatacaactcaaatgacagaaatgggtctgcaccagaagttgcagctgctccagcgaaaacatacgcatacgacagcaattaccagccccctcccgaaaaatagctgaagcacacaaggctgcaaggtttgctgtcggagctctggcatttgatgatgtctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="32926" stop="31657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32624" g_stop="31957" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="669" r_length="667" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E392026" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32624" e_stop="31957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTAT</genome_strand>
        <mrna_strand>GATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCCGA-AAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E704648" ref_strand="+" ref_description="SGN-E704648 [FA24DE06]">
      <seq>acaagatcgagctgggcgagcagacttgaatacagcaaagacgttttatgctgcgagtatcttctttgagatccttaatcagtttggtgaactccagcctgatcttgagcagaagcagaagtatgcagcgtggaaggcagcagacataagaaaagctttgaaagaaggaaggaagcctataccaggccctcctggtgatgaaggagatacttcagagtttaccagtgtaccaagtaatacctatgatcttccatctagtggaactgattcattcatcaaacctgaaccagaatcagattcgtccaatcacatgtatgacagtgcaccattacctgcaagaccgtctcctccagcaaccaccccaccaccacctcattcacacatccctccatcgccttcggcatcgaccacacagtcacctccttcacatttccctccatcacctccttcctatcctagtggtgagtatccttctcataattttcagcagcctccacccggtgatgcatctgaaaattcttcttactcccagccgtatcaccatcaaccttatacgcaagaaccacagtcgcacttgtcgccagccgcactacccttcacaataccccaatttccagtcgtatcctagcttttccgagagtagtcttccttctgcaccatcgcatcacccttcttactaccaaggtgcggatgcttcgtattccacattgcctccatctaacactgcaaactatccatcaagcgctcaatacaactcaaatgacagaaatgggtctgcaccagaagttgcagctgctccagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="34205" stop="31767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34205" g_stop="34104" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34103" i_stop="33902" i_length="202">
            <donor d_prob="0.438" d_score="0.87"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33901" g_stop="33761" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="244" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33760" i_stop="32625" i_length="1136">
            <donor d_prob="0.397" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32624" g_stop="32067" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="803" r_length="559" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E704648" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34205" e_stop="34104"/>
          <exon e_start="33901" e_stop="33761"/>
          <exon e_start="32624" e_stop="32067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG-ACTCCAGCCTGATGTGAGTTTCGATTATATTGTGACAAGCTTTGATCAACTTTTTTCTCTCCTTTTGCTTTTATTTACTTTTCTATGATGATACATGAAAATACATTATTTCTTTTCATCTGTATGGTCACATGTATTTTATATGTATAAGAAAATATGTTTGGTGACATGGGCTCTGCTTGCCAGATTGGTTGACCTCTTATATTTATTATCAGCTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTATGTAGGTTCCATGCTTGTCGTAATTTGTTGCCTAGTATATTATTCTTTCTCAAAAAGTTTTAGGAGGCAGAGTAGTTATGGTCACATGTTACAACAACAGCATAACTAGTGTAATCCCACAAGTGAGATCTGGGGAGGGTGGTGTGTACGTAGCCTTACTCCTACCTCGTGAAGGTAGAGAAGCTGTTTCCCGTAGACCCCCAGCTCAAGTAACACATATGGTCGTAACTCGTATGTTGCACTGAATAATTATTGCAATTGTGGAAACAGACCTTTCGTTATTGATAAGTTTGAATGTGACCTTTCTTTCTGGAGAAAGTAGATGGAAATCAATGGGACAGATGGGGGGCTACTACTGTCCTTTTTGAAGTGTAATTGGAAAGATCTTATAATACTGTCATTTAAAGGAAAGCCTTAATGTAGACCTTCAAAGTTTCTTGTTTTTAGGCCCAATGACGGGCTCTTACTTTAGTGTGTGTTTCCCTGTTAACACTTTAATATTTTTGAGTTTTGAGCATCCTTCGGGGGCCCAGCCCAGTGGTTTGAGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCGAAACCCTTTGCCAGCGAAAGCAAGGGGTTAGCCTTCTGGGTCGAGCTCGTCGCACCAAGCTTGTCTAGTGCGGGTCACCTCTCCTATGTGGTTTGCGAGTTATTGCATAGAAGTGGGGGTTTAACCCGGTGCGCATCCAAAGGCTAGCGGCTGCGGATTTCCCTTGTCATAAAAAAAAATAATTTTGAGTTTTGAGCTTTGAACATGTGGCTGTTAAATTGCTTAGATTTCTTGCTTGAAATAATTAGTTCCTTTCAAGAGCATCAGAAGACATAGTAATTGCAAGCTATTACTAAAGCTAATGTTTAGTTCATTTCTTTTGTTAGACAATGTTGTCCCACTAATTAGTTTAGTACAGTTTTTGGATTTTATATCATTTCAGTTCTTGATTGGGACATTTTATTTTGGATAAACAATGTTCTCCTACACTTTTTTTCTTTAGTAATATTAGCCTCCTGTAACTTTGCATGTCTTGATGCCTGTCTATGAAACACATTACTTCATCAAAATATATAATTGCAAGCTATTGTTGCTAACTGCCTGTGGCATTGTTGCAGGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCG-CAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCG</genome_strand>
        <mrna_strand>ACAAGATCGAGCTGGGCGAGCAGACTTGAATACAGCAAAGACGTTTTATGCTGCGAGTATCTTCTTTGAGATCCTTAATCAGTTTGGTGAACTCCAGCCTGAT..........................................................................................................................................................................................................CTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATCACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E317218" ref_strand="+" ref_description="SGN-E317218 [cTOA-28-E18]">
      <seq>ctctttgttcactagcaaaacaatagagacaaattaatatggcacctttaggagacaataataacaataatgttgttgtttcaaacttgaaacttgaaagaatgcttagtatgaagggaggcaaaggagaagctagttatgtcaataactctcaagctcaggggcaacatgcacgatcaatgctacacttattgaaagataccctcgacggagttcagctaaactcgccggagattccattcgtaatcgccgatttaggatgttcctgcggtggcaacacgattttcattatcgacgtaatcgtcgaacacatgagcaagcgttacgaagccaccggacaagagccgccggaattttcagctttcttctccgatctaccgtcgaacgatttcaacactctgtttcaattgctaccgcctttagctaataatggctgtggaagtatggaagaatgcttagcttctaatagccaccgctcttatttcgccgccggagttcctggttccttttaccggcgtcttttcccggccagatctatcgatgttttctattccgcattttctctgcattggctctctcangtgccggagatagtgttggataagagatcaccagcatataacaaaggaaaaatatacatacatggagcaaatgagagcacagcaaatgcatacagaaagcaatttcagacagatttggcttattttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="38491" stop="40579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38791" g_stop="38951" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38952" i_stop="39398" i_length="447">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39399" g_stop="39818" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="581" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39819" i_stop="40148" i_length="330">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40149" g_stop="40279" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="712" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E317218" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38791" e_stop="38951"/>
          <exon e_start="39399" e_stop="39818"/>
          <exon e_start="40149" e_stop="40279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGTTCACTAGCAAAACAATAGAGACAAATTAATATGGCACCTTTAGGAGACAATAATAACAATAATGTTGTTGTTTCAAACTTGAAACTTGAAAGAATGCTTAGTATGAAGGGAGGCAAAGGAGAAGCTAGTTATGTCAATAACTCTCAAGCTCAGGTCCATATTTATTTTTTTTAATTTTGAGTATTTAGTTATCACTTTCAAGTATTTTGTAAAATTAATTTTACTCTAATTTAGATGAATATTTAAGTTTGAGTGATTTAAGTGCTAGCAATTAAAGTTTTAAATCAAATATATAAATATCTTCTGGCTAAACTCTAAAATCTTTTATTTTTCTATAAAATTTAATAACGTAACTAATTTTCGAGTGTATGAATTGTGGATTCTAGAAAAAGTAGTTCACTAAATTTATTTGTTTATATTGAACGAAATTTTACTTCAGATACAAAATTTTAATTCAAAGTTACTGAGTTCTGTTGAATCTGTATCTGCAAGTTTAGTTCAAAATAGTAATTTTGGATTATTTGCAAAAATAAGTCCAGTCCTTCAATTTTTCCTTAACGTAAAATTGAACCCTTGTGTTATTATCCTATTATTATTCAGGGGCAACATGCACGATCAATGCTACACTTATTGAAAGATACCCTCGACGGAGTTCAGCTAAACTCGCCGGAGATTCCATTCGTAATCGCCGATTTAGGATGTTCCTGCGGTGGCAACACGATTTTCATTATCGACGTAATCGTCGAACACATGAGCAAGCGTTACGAAGCCACCGGACAAGAGCCGCCGGAATTTTCAGCTTTCTTCTCCGATCTACCGTCGAACGATTTCAACACTCTGTTTCAATTGCTACCGCCTTTAGCTAATAATGGCTGTGGAAGTATGGAAGAATGCTTAGCTTCTAATAGCCACCGCTCTTATTTCGCCGCCGGAGTTCCTGGTTCCTTTTACCGGCGTCTTTTCCCGGCCAGATCTATCGATGTTTTCTATTCCGCATTTTCTCTGCATTGGCTCTCTCAGGTAATTAAACTTTTACGTGTCCCTTCGAGTTTAAGTTATATCCACTCGTATTTAGTAATTCAATTTTGGGAAAAACAATAAATATGTTTCAATTATTATAAATAGTAGTTATATTTTTTGAACTGATGTTCCTGCCGTCTAAAATACTAATGGTCATAATTTTGGGATACTGATGCTCTTGCCGACCAAAATAAAGATATACACATGTCATAATTTTATACACCAGCCCGGCATATGAAGATATATTTATCATTTTTACCTTTAATTTTTCACTTTTATTTTATCTTCGTGGACCAAATTACCCTTGTTTAACGGTTCATCTGGATACAGGTGCCGGAGATAGTGTTGGATAAGAGATCACCAGCATATAACAAAGGAAAAATATACATACATGGAGCAAATGAGAGCACAGCAAATGCATACAGAAAGCAATTTCAGACAGATTTGGCTTATTTTTTGGG</genome_strand>
        <mrna_strand>CTCTTTGTTCACTAGCAAAACAATAGAGACAAATTAATATGGCACCTTTAGGAGACAATAATAACAATAATGTTGTTGTTTCAAACTTGAAACTTGAAAGAATGCTTAGTATGAAGGGAGGCAAAGGAGAAGCTAGTTATGTCAATAACTCTCAAGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAACATGCACGATCAATGCTACACTTATTGAAAGATACCCTCGACGGAGTTCAGCTAAACTCGCCGGAGATTCCATTCGTAATCGCCGATTTAGGATGTTCCTGCGGTGGCAACACGATTTTCATTATCGACGTAATCGTCGAACACATGAGCAAGCGTTACGAAGCCACCGGACAAGAGCCGCCGGAATTTTCAGCTTTCTTCTCCGATCTACCGTCGAACGATTTCAACACTCTGTTTCAATTGCTACCGCCTTTAGCTAATAATGGCTGTGGAAGTATGGAAGAATGCTTAGCTTCTAATAGCCACCGCTCTTATTTCGCCGCCGGAGTTCCTGGTTCCTTTTACCGGCGTCTTTTCCCGGCCAGATCTATCGATGTTTTCTATTCCGCATTTTCTCTGCATTGGCTCTCTCAN..........................................................................................................................................................................................................................................................................................................................................GTGCCGGAGATAGTGTTGGATAAGAGATCACCAGCATATAACAAAGGAAAAATATACATACATGGAGCAAATGAGAGCACAGCAAATGCATACAGAAAGCAATTTCAGACAGATTTGGCTTATTTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E336073" ref_strand="+" ref_description="SGN-E336073 [cTOE-12-O19]">
      <seq>ctctttgttcactagcaaaacaatagagacaaattaatatggcacctttaggagacaataataacaataatgttgttgtttcaaacttgaaacttgaaagaatgcttagtatgaagggaggcaaaggagaagctagttatgtcaataactctcaagctcaggggcaacatgcacgatcaatgctacacttattgaaagataccctcgacggagttcagctaaactcgccggagattccattcgtaatcgccgatttaggatgttcctgcggtggcaacacgattttcattatcgacgtaatcgtcgaacacatgagcaagcgttacgaagccaccggacaagagccgccggaattttcagctttcttctccgatctaccgtcgaacgatttcaacactctgtttcaattgctaccgcctttagctaataatggctgtggaagtatggaagaatgcttagcttctaatagccaccgctcttatttcgccgccggagttcctggttccttttaccggcgtcttttcccggccagatctatcgatgttttctattccgcattttctctgcattggctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="38491" stop="40116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38791" g_stop="38951" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38952" i_stop="39398" i_length="447">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39399" g_stop="39816" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="579" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E336073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38791" e_stop="38951"/>
          <exon e_start="39399" e_stop="39816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTGTTCACTAGCAAAACAATAGAGACAAATTAATATGGCACCTTTAGGAGACAATAATAACAATAATGTTGTTGTTTCAAACTTGAAACTTGAAAGAATGCTTAGTATGAAGGGAGGCAAAGGAGAAGCTAGTTATGTCAATAACTCTCAAGCTCAGGTCCATATTTATTTTTTTTAATTTTGAGTATTTAGTTATCACTTTCAAGTATTTTGTAAAATTAATTTTACTCTAATTTAGATGAATATTTAAGTTTGAGTGATTTAAGTGCTAGCAATTAAAGTTTTAAATCAAATATATAAATATCTTCTGGCTAAACTCTAAAATCTTTTATTTTTCTATAAAATTTAATAACGTAACTAATTTTCGAGTGTATGAATTGTGGATTCTAGAAAAAGTAGTTCACTAAATTTATTTGTTTATATTGAACGAAATTTTACTTCAGATACAAAATTTTAATTCAAAGTTACTGAGTTCTGTTGAATCTGTATCTGCAAGTTTAGTTCAAAATAGTAATTTTGGATTATTTGCAAAAATAAGTCCAGTCCTTCAATTTTTCCTTAACGTAAAATTGAACCCTTGTGTTATTATCCTATTATTATTCAGGGGCAACATGCACGATCAATGCTACACTTATTGAAAGATACCCTCGACGGAGTTCAGCTAAACTCGCCGGAGATTCCATTCGTAATCGCCGATTTAGGATGTTCCTGCGGTGGCAACACGATTTTCATTATCGACGTAATCGTCGAACACATGAGCAAGCGTTACGAAGCCACCGGACAAGAGCCGCCGGAATTTTCAGCTTTCTTCTCCGATCTACCGTCGAACGATTTCAACACTCTGTTTCAATTGCTACCGCCTTTAGCTAATAATGGCTGTGGAAGTATGGAAGAATGCTTAGCTTCTAATAGCCACCGCTCTTATTTCGCCGCCGGAGTTCCTGGTTCCTTTTACCGGCGTCTTTTCCCGGCCAGATCTATCGATGTTTTCTATTCCGCATTTTCTCTGCATTGGCTCTCTC</genome_strand>
        <mrna_strand>CTCTTTGTTCACTAGCAAAACAATAGAGACAAATTAATATGGCACCTTTAGGAGACAATAATAACAATAATGTTGTTGTTTCAAACTTGAAACTTGAAAGAATGCTTAGTATGAAGGGAGGCAAAGGAGAAGCTAGTTATGTCAATAACTCTCAAGCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAACATGCACGATCAATGCTACACTTATTGAAAGATACCCTCGACGGAGTTCAGCTAAACTCGCCGGAGATTCCATTCGTAATCGCCGATTTAGGATGTTCCTGCGGTGGCAACACGATTTTCATTATCGACGTAATCGTCGAACACATGAGCAAGCGTTACGAAGCCACCGGACAAGAGCCGCCGGAATTTTCAGCTTTCTTCTCCGATCTACCGTCGAACGATTTCAACACTCTGTTTCAATTGCTACCGCCTTTAGCTAATAATGGCTGTGGAAGTATGGAAGAATGCTTAGCTTCTAATAGCCACCGCTCTTATTTCGCCGCCGGAGTTCCTGGTTCCTTTTACCGGCGTCTTTTCCCGGCCAGATCTATCGATGTTTTCTATTCCGCATTTTCTCTGCATTGGCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E351237" ref_strand="+" ref_description="SGN-E351237 [cTOS-6-B3]">
      <seq>agaaaagggacaagttcaatattccagtgtatgcaccaagcattcaagatttcaaagaagtggtagaagcaaatgactcattcaaaattaacaatcttcaagtttttaggggaggtagccctcttgtggttagccatccagacgacgcggctgaaataggacgagcactggctaacagctgtagaagtgttagtggggtgctcgtcgatgcccacattggtgaacagctcagtgatgagctgttcaccagagtggaggaacgagccacgtgtcatgcaaaagagcttcttcagaatcttcagttttttcatattgttgcttcactttctcttgtgtagagatttgaatgtttaattagtagaattttcaaaagagagacaaagaggctctagtgaaagtctatatgtctctcatgtattagaatgaaatattgttagagaaattaagactgacttgtagtttggtttggttgataatatatgatcggtaaaaattaaatgtttaaatttgtgatttaaacaaaccttagacatttgtcatttgtttaatttttcaatctataaaaatctcgcgttgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="40438" stop="41620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40738" g_stop="41316" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="590"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E351237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40738" e_stop="41316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGGACAAGTTCAATATTCCAGTGTATGCACCAAGCATTCAAGATTTCAAAGAAGTGGTAGAAGCAAATGACTCATTCAAAATTAACAATCTTCAAGTTTTTAGGGGAGGTAGCCCTCTTGTGGTTAGCCATCCAGACGACGCGGCTGAAATAGGACGAGCACTGGCTAACAGCTGTAGAAGTGTTAGTGGGGTGCTCGTCGATGCCCACATTGGTGAACAGCTCAGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGATTTAAACAAACCTTAGACATTTGTCATTTGTTTAATTTTTCAATCTATAAAAATCTCGCGTTGTTA</genome_strand>
        <mrna_strand>AGAAAAGGGACAAGTTCAATATTCCAGTGTATGCACCAAGCATTCAAGATTTCAAAGAAGTGGTAGAAGCAAATGACTCATTCAAAATTAACAATCTTCAAGTTTTTAGGGGAGGTAGCCCTCTTGTGGTTAGCCATCCAGACGACGCGGCTGAAATAGGACGAGCACTGGCTAACAGCTGTAGAAGTGTTAGTGGGGTGCTCGTCGATGCCCACATTGGTGAACAGCTCAGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGATTTAAACAAACCTTAGACATTTGTCATTTGTTTAATTTTTCAATCTATAAAAATCTCGCGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E356139" ref_strand="+" ref_description="SGN-E356139 [cTOS-20-I1]">
      <seq>agaaaagggacaagttcaatattccagtgtatgcaccaagcattcaagatttcaaagaagtggtagaagcaaatgactcattcaaaattaacaatcttcaagtttttaggggaggtagccctcttgtggttagccatccagacgacgcggctgaaataggacgagcactggctaacagctgtagaagtgttagtggggtgctcgtcgatgcccacattggtgaacagctcagtgatgagctgttcaccagagtggaggaacgagccacgtgtcatgcaaaagagcttcttcagaatcttcagttttttcatattgttgcttcactttctcttgtgtagagatttgaatggttaattagtagaattttccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="40438" stop="41410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40738" g_stop="41110" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E356139" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40738" e_stop="41110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGGGACAAGTTCAATATTCCAGTGTATGCACCAAGCATTCAAGATTTCAAAGAAGTGGTAGAAGCAAATGACTCATTCAAAATTAACAATCTTCAAGTTTTTAGGGGAGGTAGCCCTCTTGTGGTTAGCCATCCAGACGACGCGGCTGAAATAGGACGAGCACTGGCTAACAGCTGTAGAAGTGTTAGTGGGGTGCTCGTCGATGCCCACATTGGTGAACAGCTCAGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAG</genome_strand>
        <mrna_strand>AGAAAAGGGACAAGTTCAATATTCCAGTGTATGCACCAAGCATTCAAGATTTCAAAGAAGTGGTAGAAGCAAATGACTCATTCAAAATTAACAATCTTCAAGTTTTTAGGGGAGGTAGCCCTCTTGTGGTTAGCCATCCAGACGACGCGGCTGAAATAGGACGAGCACTGGCTAACAGCTGTAGAAGTGTTAGTGGGGTGCTCGTCGATGCCCACATTGGTGAACAGCTCAGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGGTTAATTAGTAGAATTTTCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E349257" ref_strand="+" ref_description="SGN-E349257 [cTOS-2-N5]">
      <seq>agtgatgagctgttcaccagagtggaggaacgagccacgtgtcatgcaaaagagcttcttcagaatcttcagttttttcatattgttgcttcactttctcttgtgtagagatttgaatgtttaattagtagaattttcaaaagagagacaaagaggctctagtgaaagtctatatgtctctcatgtattagaatgaaatattgttagagaaattaagactgacttgtagtttggtttggttgataatatatgatcggtaaaaattaaatgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="40668" stop="41543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40968" g_stop="41250" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E349257" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40968" e_stop="41250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGA</genome_strand>
        <mrna_strand>AGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E352990" ref_strand="+" ref_description="SGN-E352990 [cTOS-14-C8]">
      <seq>agtgatgagctgttcaccagagtggaggaacgagccacgtgtcatgcaaaagagcttcttcagaatcttcagttttttcatattgttgcttcactttctcttgtgtagagatttgaatgtttaattagtagaattttcaaaagagagacaaagaggctctagtgaaagtctatatgtctctcatgtattagaatgaaatattgttagagaaattaagactgacttgtagtttggtttggttgataatatatgatcggtaaaaattaaatgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="40668" stop="41543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40968" g_stop="41250" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E352990" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40968" e_stop="41250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGA</genome_strand>
        <mrna_strand>AGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E222068" ref_strand="-" ref_description="SGN-E222068 [cLEL-36-E16]">
      <seq>aacgagccacgtgtcatgcaaaagagcttcttcagaatcttcagttttttcatattgttgcttcactttctcttgtgtagagatttgaatgtttaattagtagaattttcaaaagagagacaaagaggctctagtgaaagtctatatgtctctcatgtattagaatgaaatattgttagagaaattaagactgacttgtagtttggtttggttgataatatatgatcggtaaaaattaaatgtttaaatttgtgatttaaacaaaccttagacatttgtcatttgtttaatttttcaatctataaaaatctcgcgttgttaataattttgtttcatatttattcctaccttaacgattttctagcttgaatctgacatttggtccaaaatataaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="40696" stop="83621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40996" g_stop="41385" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41386" i_stop="42996" i_length="1611">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42997" g_stop="43026" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="0.733"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E222068" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="40996" e_stop="41385"/>
          <exon e_start="42997" e_stop="43026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGATTTAAACAAACCTTAGACATTTGTCATTTGTTTAATTTTTCAATCTATAAAAATCTCGCGTTGTTAATAATTTTGTTTCATATTTATTCCTACCTTAACGATTTTCTAGCTTGAATCTGACATTTGGTCCAAAATATATCCCTAGGATTCGAAACTAAAACCACATCATGTAAGGCCCTTAACGGTATAAATGAGCCTTACTATTGATTTTTTGACTGCCTCGAATTCAAAATTACTGATTAAAAAAATAAAAAACTCGCAAGTAACTTATCACAAGTAAGGTAGTAGAATACATAGTCTATGAGAAGAAAAAAAAGGTCCTATTTAGGCAAGAACTAGATTGATGATTTTAATTAGGGAAATTTTTTTAAAATGTCAATATTTTGATTTAGCATTTAAGAGGACTCATTAGCAACAATTTCAATATTTAGTAAAAATGTCATTTTAGTTTGTTATGTATATTTTTATTATTTATTTTTATTTAAAGAATATAATTATTTAATAACAAAAAGGAGAAAATTAAGGGGGAATATTTCAAAAAAAGGCAAGCATCTTTAATTTTTTCATCAGTTACATTTTCAAATTAAATTTAAATTTTGTTTTTTTTCTCTCCAGAATTTTACCTTTTTAAAATTATGTTCATTCTACAATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCAATAAATGGACGAGTTGTTCTTGTGATTATGTAAAATGCATTATGGGTTATTCAATTATTAAAGTAATCAAACCNCCATATATTTTCTTTCCTATGTTAATTATTAATCCAATTTCGATATTTTAAATACACAATTTATTTTATTATATATTTTTTAAAATATTGAAAAAATTAAAAAAAATCTTCCTCTCTTCTATTCTATGATTCATTATTTTACGGGTTTTATCTATTAAATACATCACTTTATATTATATATCGAGAATCGAGACATATATAATCTTAAAAAAAATGGAAAAAAAAATTTCGTACTCTCTTCTAATAATAATAATGGTCTTAAATTACAATTTATAGTGGTTGTGGGTAGATTTAGAAAGGTAAATCATGACTCTTTTTTTTTTTTTCTAATATGAGACAATATGTTAACGTATACGTAAATTTTGGAAAAGTAGTATTCCTTTCATTTTTTATATTATATTTAGAAAAGACAAATCATGTCATTTATTCCCCACAATTTTCGATCACATCTCATTTTGTACAATAAATACAAATAAAATTTGTGTTTTCTCTTCAAATAACTAAAATAGAAAAATATTTTCTTTTTATGTAGTTTGACGTAAATATGAGCAAGTTTTTAACTCATATTTCGGCAAAGATTAAATTACTATTGTTTTTTATTTATTTATTCAATTTTTAATGAAAAAAATTACTTAATATATATAATAATTTTCTTAAAATTAATCTCTCTCTCACATATATATATATATTCAAATACTATGATTGTAAACTGTAAAGAAAGAATTAAAGTATGCTTTTGGGAATTTAGTGTTGATGGCACGTTTTAATATTTGTGAATTTAAATTAATTGACTAAATTAAAGGCACTATATATAGGTTATTCTAGCTCTAGTTTTTAGCAATAAAGTTGAGGACGGCAACTACAAAGAGTTGGCTCCTCTAAAGTTGGAAATTGGAAAAAAAAGTGAAAAAGAAAGAATGAAATAATAAATAAAAAACAAAA</genome_strand>
        <mrna_strand>AACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGATTTAAACAAACCTTAGACATTTGTCATTTGTTTAATTTTTCAATCTATAAAAATCTCGCGTTGTTAATAATTTTGTTTCATATTTATTCCTACCTTAACGATTTTCTAGCTTGAATCTGACATTTGGTCCAAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E578367" ref_strand="-" ref_description="SGN-E578367 [LE12CH11]">
      <seq>ttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47478" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47178" g_stop="46451" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="729" polyA_stop="745"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E578367" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578367" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47178" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>TTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E216375" ref_strand="-" ref_description="SGN-E216375 [cLEL-13-K2]">
      <seq>gcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47120" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46820" g_stop="46451" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="386"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E216375" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46820" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>GCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E219958" ref_strand="-" ref_description="SGN-E219958 [cLEL-24-O3]">
      <seq>ggcaccaggtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46943" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46451" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="202" polyA_stop="216"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E219958" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219958" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGC-CTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>GGCACCAGGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E222112" ref_strand="-" ref_description="SGN-E222112 [cLEL-36-E8]">
      <seq>ggcaccaggtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46943" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46451" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="202" polyA_stop="216"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E222112" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGC-CTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>GGCACCAGGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E225356" ref_strand="-" ref_description="SGN-E225356 [cLEL-17-D4]">
      <seq>ggcaccaggtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46943" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46451" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="202" polyA_stop="216"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E225356" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225356" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGC-CTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>GGCACCAGGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E219814" ref_strand="-" ref_description="SGN-E219814 [cLEL-24-O3]">
      <seq>caggtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacttatgaaattttacgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="46943" stop="46151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46646" g_stop="46451" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="197" polyA_stop="211"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E219814" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46646" e_stop="46451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</genome_strand>
        <mrna_strand>CAGGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E278861" ref_strand="+" ref_description="SGN-E278861 [cLER-2-L16]">
      <seq>ttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctatcaataaacgagagcattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47228" stop="46168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46928" g_stop="46455" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E278861" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46928" e_stop="46455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTA</genome_strand>
        <mrna_strand>TTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAAC-GAGAGCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E746494" ref_strand="+" ref_description="SGN-E746494 [GI|47104256]">
      <seq>ttaagttataatataatattgttcataaacaaaaaaacatgaatatgaatttgcctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccaaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgccctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaattccatcatgttactaatctcactggaacaattccacctgcaattgctaaactcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaatttcttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgttagcgatttacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaagggaccaaatataccagatctctacctttcacataacagcttgaccggaaaagtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgtttgggaagaataagacgagtcgggtaattgacttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccacaaggattgaaagatgtaccattacaatttttcaatgtgagttataatagactttgtggacagattccacaaggtggtacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaactgtaagtaggtatggaggtcaaggatttggatagccgagaattgtagtagaggcaactagccttctcttgtcgttcctaatcatatttagtgctcatttagtttttataatccgtatatgagggtctaatgaatatagtctctctatcaataaactggcatcttcaaatttcacttatgaaattgtacggagtatgttattgatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47919" stop="42886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47651" g_stop="46466" g_length="1186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1176" r_length="1176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1225" polyA_stop="1239"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E746494" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>1186</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47651" e_stop="46466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTT</genome_strand>
        <mrna_strand>TTAAGTTATAATATAATATTGTTCATAAACAAAAAAA--------CAT-GAATATGAATTTGCCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCAAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCCCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTCCATCATGTTACTAATCTCACTGGAACAATTCCACCTGCAATTGCTAAACTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTTCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGTTAGCGATTTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAGGGACCAAATATACCAGATCTCTACCTTTCACATAACAGCTTGACCGGAAAAGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTTGGGAAGAATAAGACGAGTCGGGTAATTGACTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACAAGGATTGAAAGATGTACCATTACAATTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGTACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAACTGTAAGTAGGTATGGAGGTCAAGGATTTGGATAGCCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTTGTCGTTCCTAATCATATTTAGTGCTCATTTAG-TTTTTATAATCCGTATATGAGGGTCTAATGAATATAGTCTCTCTATCAATAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E261322" ref_strand="+" ref_description="SGN-E261322 [cLEG-57-A5]">
      <seq>gctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcatatttagtgctcttttcgctttttataatccgtatgcgaggatctaatgaatatagtctctctattcataaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47536" stop="46167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47236" g_stop="46467" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E261322" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47236" e_stop="46467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACT</genome_strand>
        <mrna_strand>GCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATTCATAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E262064" ref_strand="+" ref_description="SGN-E262064 [cLEG-58-A5]">
      <seq>gctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagnanggtatgganggtcgaggatttaaataatcgagaattgtagtagaggcaactagccnttctctagtcngtcctaatcatatttagtgctcttttcgctttttataatccgtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47536" stop="46204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47236" g_stop="46504" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E262064" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47236" e_stop="46504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTA-GGTATGGA-GGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCC-TTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGC</genome_strand>
        <mrna_strand>GCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGNANGGTATGGANGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCNTTCTCTAGTCNGTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E711260" ref_strand="+" ref_description="SGN-E711260 [FB01BH04]">
      <seq>cgcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcagagctttgatatttactcttatttgcataacaaatgcctttgtggctctcccttgccgaaatgtaagtaggtatggaggtcgaggatttaaataatcgagaattgtagtagaggcaactagccttctctagtcgttcctaatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47531" stop="46239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47232" g_stop="46542" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="705"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E711260" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47232" e_stop="46542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATC</genome_strand>
        <mrna_strand>CGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E709865" ref_strand="+" ref_description="SGN-E709865 [FA53CA01]">
      <seq>cacgttaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccacaaggtggaacgttgcaaagctttgatatttactctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47793" stop="46364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47499" g_stop="46664" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="836" r_length="836" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E709865" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47499" e_stop="46664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTA</genome_strand>
        <mrna_strand>CACGTTAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAAAGCTTTGATATTTACTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E704917" ref_strand="+" ref_description="SGN-E704917 [FA25CE10]">
      <seq>gtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttttcaatgtgagttataatagactttgtggacagattccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47838" stop="46400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47538" g_stop="46700" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E704917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47538" e_stop="46700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACA</genome_strand>
        <mrna_strand>GTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E708104" ref_strand="+" ref_description="SGN-E708104 [FA34DE01]">
      <seq>cagtaaatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagttttttcatgtgagttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47903" stop="46425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47604" g_stop="46725" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E708104" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47604" e_stop="46725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATA</genome_strand>
        <mrna_strand>CAGTAAATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTTCATGTGAGTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E370164" ref_strand="+" ref_description="SGN-E370164 [TUS-28-E14]">
      <seq>aaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggaatgaaagatgtaccattgcagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47752" stop="46440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47452" g_stop="46740" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E370164" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47452" e_stop="46740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTT</genome_strand>
        <mrna_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGAATGAAAGATGTACCATTGCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E345766" ref_strand="+" ref_description="SGN-E345766 [cTOF-18-I21]">
      <seq>cagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattgaaagatgtaccattgcagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47747" stop="46440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47447" g_stop="46740" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E345766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47447" e_stop="46740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTT</genome_strand>
        <mrna_strand>CAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E699672" ref_strand="+" ref_description="SGN-E699672 [FA10DE06]">
      <seq>gagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttggtagcttaccaccaggattggaagatgtaccattgcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47904" stop="46441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47604" g_stop="46741" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E699672" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47604" e_stop="46741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTT</genome_strand>
        <mrna_strand>GAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGGAAGATGTACCATTGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E704374" ref_strand="+" ref_description="SGN-E704374 [FA24AE01]">
      <seq>gagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaaattttggtagcttaccaccaggattgaaagatgtaccattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47904" stop="46445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47604" g_stop="46745" g_length="860"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E704374" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47604" e_stop="46745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCA</genome_strand>
        <mrna_strand>GAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAAATTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E710464" ref_strand="+" ref_description="SGN-E710464 [FA55CA10]">
      <seq>tgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattggatttgaatcataatcgaatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47897" stop="46482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47597" g_stop="46782" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E710464" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47597" e_stop="46782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTG</genome_strand>
        <mrna_strand>TGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTG-AGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E707573" ref_strand="+" ref_description="SGN-E707573 [FA33BE12]">
      <seq>cataagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttattggagtttgatatttcgaaatcggagtttgctgagagcttgatatcattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47913" stop="46505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47614" g_stop="46805" g_length="810"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E707573" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47614" e_stop="46805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGA</genome_strand>
        <mrna_strand>CATAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E710850" ref_strand="+" ref_description="SGN-E710850 [FA57AA11]">
      <seq>ccataaaagaagagagaatatgaacttgtctcttcttcttgccgttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataagacgagtcaggtaattgatttatcgaggaatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47915" stop="46556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47617" g_stop="46856" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E710850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47617" e_stop="46856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATT</genome_strand>
        <mrna_strand>CCATAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGCCGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E709904" ref_strand="+" ref_description="SGN-E709904 [FA53CD10]">
      <seq>cgataaaaaaaaagaagagagaatatgaacttgtctcttcttcttgaagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaaaaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttaaatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccaaatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttctccaggaataagcttgaaggagatgtttcgtttttgttcgggaagaataaaacgagtcagggaattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47922" stop="46571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47622" g_stop="46871" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E709904" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47622" e_stop="46871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTT</genome_strand>
        <mrna_strand>CGATAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGAAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAAAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAAATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAAATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAAACGAGTCAGGGAATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E270929" ref_strand="+" ref_description="SGN-E270929 [cLEM-6-H18]">
      <seq>aaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtgccggcatctttaggtgatttgaatttttccacgcttgatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47752" stop="46641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47452" g_stop="46941" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E270929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47452" e_stop="46941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</genome_strand>
        <mrna_strand>AAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E329265" ref_strand="+" ref_description="SGN-E329265 [cTOD-2-H2]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttcgttgctgggcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaagctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgaccggacatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47902" stop="46684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47602" g_stop="46984" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E329265" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47602" e_stop="46984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCGTTGCTGGGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAAGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E326870" ref_strand="+" ref_description="SGN-E326870 [cTOC-25-G16]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatataccagatctctacctttcacacaacagcttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47902" stop="46693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47602" g_stop="46993" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E326870" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47602" e_stop="46993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E325377" ref_strand="+" ref_description="SGN-E325377 [cTOC-1-I7]">
      <seq>tcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaataccggaatcgtttgggagatttaaaggaccaaatatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47884" stop="46724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47584" g_stop="47024" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E325377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47584" e_stop="47024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</genome_strand>
        <mrna_strand>TCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E324027" ref_strand="+" ref_description="SGN-E324027 [cTOC-3-C9]">
      <seq>aaaaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaactcaccggaacaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47917" stop="46761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47617" g_stop="47061" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E324027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47617" e_stop="47061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</genome_strand>
        <mrna_strand>AAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E337233" ref_strand="+" ref_description="SGN-E337233 [cTOE-7-C12]">
      <seq>agaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgtacttagatcgtaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47903" stop="46776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47603" g_stop="47076" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E337233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47603" e_stop="47076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</genome_strand>
        <mrna_strand>AGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E325882" ref_strand="+" ref_description="SGN-E325882 [cTOC-12-C9]">
      <seq>aaaaaagaagagagaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacacagattgctgttactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaatcccttcttccctctctcagcttccgaatttgctagcgatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47915" stop="46793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47615" g_stop="47093" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E325882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47615" e_stop="47093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</genome_strand>
        <mrna_strand>AAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E319323" ref_strand="+" ref_description="SGN-E319323 [cTOB-16-P12]">
      <seq>gaatatgaacttgtctcttcttcttgtagttatttttctttgctttgcttctccttcactatcagtaagatgcaatccgaaagacaaaaaagtccttctacaaataaagaaagacttaggcaatccttaccatttagcttcatgggatccaaacaaagatggctgttactggtccgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttccaagccaatatctccggccaaattccggcagccgtcggagaccttccatatctcgaaacattggaatttcatcatgttactaatctcaccggaacaattccacctgcaattgcgaagctcacaaatctcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatttgacgttgctcgagttgaattacaatcaatttaccggaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47902" stop="46835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47602" g_stop="47135" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E319323" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47602" e_stop="47135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</genome_strand>
        <mrna_strand>GAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACAAAGATGGCTGTTACTGGTCCGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E268379" ref_strand="+" ref_description="SGN-E268379 [cLEI-13-I16]">
      <seq>gtctgttcttcttgtaattatttctctttgctttgcgtctccttcactatcagtaggatgcaatccgtaagacaaaaaagtccttctacaaataaagaaagactgaggcaatccttaccatttagctttatgggatccaaacacagattgctgctactggtacgtcgtaaaatgtgaccggaaaaccaaccggataaatgctctcaccgtcttgcaagccaatatctccggccaaattccggcagccgccggagaccttccatatctcgaaacattggaatttcatcatgtgactaatctcaccggaacaatttcacctgcaattgcgaagctcacaaatgtcaaaatgttaaggctcagcttcactaaccttacaggtccgatccctgaattccttagtcagctgaagaatctgacgttgctcgagttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="47890" stop="46859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47590" g_stop="47159" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E268379" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47590" e_stop="47159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAA</genome_strand>
        <mrna_strand>GTCTGTTCTTCTTGTAATTATTTCTCTTTGCTTTGCGTCTCCTTCACTATCAGTAGGATGCAATCCGTAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTGAGGCAATCCTTACCATTTAGCTTTATGGGATCCAAACACAGATTGCTGCTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTGCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGCCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTGACTAATCTCACCGGAACAATTTCACCTGCAATTGCGAAGCTCACAAATGTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATCTGACGTTGCTCGAGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E307024" ref_strand="+" ref_description="SGN-E307024 [cLEY-15-C7]">
      <seq>aaaaatatttgccagcctgaaaatagcccacacccctcaagggcaatgcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcaactgaatctctccatattctcctccacctccgtcactaacggaaaaaaatctacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactctgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaaacaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatccatactctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58370" stop="60551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58670" g_stop="59006" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60251" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="536" r_length="199" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E307024" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58670" e_stop="59006"/>
          <exon e_start="60053" e_stop="60251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTA</genome_strand>
        <mrna_strand>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAGGGCAATGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAACTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATCTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTCTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAACAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCCATACTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E313423" ref_strand="+" ref_description="SGN-E313423 [cTOA-13-G20]">
      <seq>tcaaaggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58406" stop="60590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58706" g_stop="59006" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60290" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="540" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E313423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58706" e_stop="59006"/>
          <exon e_start="60053" e_stop="60290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</genome_strand>
        <mrna_strand>TCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E201049" ref_strand="+" ref_description="SGN-E201049 [cLEC-5-N4]">
      <seq>aggcaaggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58410" stop="60415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58710" g_stop="59006" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60115" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="360" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E201049" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58710" e_stop="59006"/>
          <exon e_start="60053" e_stop="60115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</genome_strand>
        <mrna_strand>AGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E310657" ref_strand="+" ref_description="SGN-E310657 [cLEZ-19-F22]">
      <seq>aggcacaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtattcgcggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58415" stop="60652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58715" g_stop="59006" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60346" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="586" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E310657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58715" e_stop="59006"/>
          <exon e_start="60053" e_stop="60346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E312685" ref_strand="+" ref_description="SGN-E312685 [cTOA-8-A3]">
      <seq>gcacaaacactcacacactttctctctctatctatctgcggtcaaagtgtcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgtactgatttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttttgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58417" stop="60589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58717" g_stop="59006" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60289" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="527" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E312685" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58717" e_stop="59006"/>
          <exon e_start="60053" e_stop="60289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCGGTCAAAGTGTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTACTGATTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTTTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E324257" ref_strand="+" ref_description="SGN-E324257 [cTOC-4-G6]">
      <seq>gcacaaacactcacacactttgtctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggagttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58417" stop="60561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58717" g_stop="59006" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60261" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="499" r_length="209" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E324257" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58717" e_stop="59006"/>
          <exon e_start="60053" e_stop="60261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</genome_strand>
        <mrna_strand>GCACAAACACTCACACACTTTGTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGAGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E305177" ref_strand="+" ref_description="SGN-E305177 [cLEY-18-D4]">
      <seq>acaaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttatatgtctcctggaactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattatctgggttacttgctgattcaagctataatgcctacatgttggcacaagcgattagctcggctgattgggttgctcggtgtgatgttcaactcacacaagacggcgttggcattcgctttcctgatatcaagcttaacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58419" stop="60530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58719" g_stop="59006" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60230" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="466" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E305177" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58719" e_stop="59006"/>
          <exon e_start="60053" e_stop="60230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGC</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTATATGTCTCCTGGAACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTATCTGGGTTACTTGCTGATTCAAGCTATAATGCCTACATGTTGGCACAAGCGATTAGCTCGGCTGATTGGGTTGCTCGGTGTGATGTTCAACTCACACAAGACGGCGTTGGCATTCGCTTTCCTGATATCAAGCTTAACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E305964" ref_strand="+" ref_description="SGN-E305964 [cLEY-17-K24]">
      <seq>acaaacactcacacactttctctcggtatctatctgctggcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58419" stop="60485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58719" g_stop="59006" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60185" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="421" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E305964" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58719" e_stop="59006"/>
          <exon e_start="60053" e_stop="60185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</genome_strand>
        <mrna_strand>ACAAACACTCACACACTTTCTCTCGGTATCTATCTGCTGGCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E314560" ref_strand="+" ref_description="SGN-E314560 [cTOA-20-M9]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58421" stop="60650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58721" g_stop="59006" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60346" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E314560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58721" e_stop="59006"/>
          <exon e_start="60053" e_stop="60346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E317751" ref_strand="+" ref_description="SGN-E317751 [cTOA-30-K15]">
      <seq>aaacactcacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58421" stop="60646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58721" g_stop="59006" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60346" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="581" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E317751" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58721" e_stop="59006"/>
          <exon e_start="60053" e_stop="60346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGG-AAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>AAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E207397" ref_strand="+" ref_description="SGN-E207397 [cLEC-36-M2]">
      <seq>acactcacacactttctctctctatctatctgctctcaaagtctcctgaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgagtcaagctttaatgcctacatgttggcacaagcaatgagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcagacaggatgggtttctatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58423" stop="60613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58723" g_stop="59006" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60313" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="545" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E207397" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58723" e_stop="59006"/>
          <exon e_start="60053" e_stop="60313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAG</genome_strand>
        <mrna_strand>ACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGAGTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATGAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGGTTTCTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E337990" ref_strand="+" ref_description="SGN-E337990 [cTOE-14-O9]">
      <seq>cacacactttctctctctatctatctgctctcaaagtctcctcaacttgtcaatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58428" stop="60390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58728" g_stop="59006" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60090" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="317" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E337990" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58728" e_stop="59006"/>
          <exon e_start="60053" e_stop="60090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</genome_strand>
        <mrna_strand>CACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E307201" ref_strand="+" ref_description="SGN-E307201 [cLEY-15-L1]">
      <seq>acactttctctctctatctatctgctctcaaagtctcctgaacttggcgatcatcacactttttcttcacacaaatcagctgaatctctccatattctcctccacctccgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcgccggaaatgaggaaaatgcgttctgttttatgtctcctggtactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaatttctcagacaggatggttttctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58431" stop="60612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58731" g_stop="59006" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60312" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="536" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E307201" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58731" e_stop="59006"/>
          <exon e_start="60053" e_stop="60312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATA</genome_strand>
        <mrna_strand>ACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTGAACTTGGCGATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTTCTCAGACAGGATGGTTTTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E335566" ref_strand="+" ref_description="SGN-E335566 [cTOE-2-B18]">
      <seq>tgctctcaaagtctcctcaacttgacaatcatcacactttttcttaacgcaaatcagctgaatctctccatattctcctccacctgcgtcactaacggaaaaaaatttacgccggaaaacgattctccggctgagctcaccggaaatgaggaaaatgcgttctgttttatgtctcctggcactttgttgctcagatgcatttgctgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggaatatcggggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcgggtgattgggttgcttggtgtgatgttcaactcacaaaagacggggttggcatttgttgtcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58453" stop="60557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58753" g_stop="59006" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60257" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="459" r_length="205" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E335566" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58753" e_stop="59006"/>
          <exon e_start="60053" e_stop="60257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</genome_strand>
        <mrna_strand>TGCTCTCAAAGTCTCCTCAACTTGACAATCATCACACTTTTTCTTAACGCAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTGCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCACCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGCACTTTGTTGCTCAGATGCATTTGCTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGAATATCGGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGGTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTGTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E305876" ref_strand="+" ref_description="SGN-E305876 [cLEY-17-G10]">
      <seq>ggaaatgatgaaaatgcgttctgttttatgtctcctgggactttgttgctcagttgcatttgttgctgctcaaagatctaacaatgtaacctctaaatggaaaacactgagcggagatgcaccaaaagtcatagctcgtggaggattttctgggttacttcctgattcaagctttaatgcctacatgttggcacaagcaattagctcggctgattgggttgcttggtgtgatgttcaactcacaaaagacggcgttggcatttgttttcctgatatcaagcttaacaatgcttctgacatcgatactctctacccaaacaggaataacaactactcggtgaatggaattcctcacacaggatggttttctatagatttcagcatcaaggatttggcacctgtcagcttgaaacaaggagtgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="58594" stop="60652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58894" g_stop="59006" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60053" g_stop="60346" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="407" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E305876" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58894" e_stop="59006"/>
          <exon e_start="60053" e_stop="60346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCGGTAACTTTTTTTTCTCTCTCTAAATTTCTACTTAATAAGTTAAAGAGTAAGCTTAAAATATCTCTCGAAGTTCAGATTAGCTATGAAGGAATTGAAGAGATCATGATAAGTTCTTCGGATGCGTTATATTTTGAGTTTTTTTTTTCAGCTACGAATTTGTTACAACAGTTGCTTGCTGAGTAGACTTCTGTATTTCAGAAAAATTAACAATGGAAGTTCAATTTAGCTATACGATACTGAAGAAATCGTGAAAAAAAGGTTTAGATTCTGTAGTTTAGAATAGTTTTGCCTATAATTTTGCTGGATAGTAACTGGAGCGGGAGAATTGTTAGGATGATTTGTTCGTTTGAAGTATTCTTCAGTGTTCAGGCGTTTGAGCTGTTTTATGTTGATTTTATTTTGTGAGATTTCTGATCAAGTTAGTTTAATTAGGGAAAAATCAAAAGCTGCATCTAGAATGTGATGGATAGTACCTGTTAATAGTAAGCTAGCTGCTCAGGAAGCAGTGATTTAACGGTTGCACTGGAGACATCTGCTTCTGTAATTCTATGTCAGTAATGGTTGTTAGTATGATGCTGGTGGTACCTGAAGTTGCAATAAAGAAACATCTTGAAAGAACATAAGTCATTGTTTTTCTGATTTTTGCAAAGTTAACTTTTGATTTTCAGTTGCTAGTCATTGCCACGGTCTTCTAGATTTTGGAGAAACATGCCAAGATGCTTTCAATTTTCAAAAGAAAAAAGAATGTTCTCTTTGCAACTGTCTTCTTATTTCCCACTGTAGTTGATGCAACACTTTGGCAGCAACTCATACCTAAATCACCTCCTCCAAGAAGGAAAAAAAGAGATAATGAAAAGAAGGAAAAGTTCCCTTGAGTAAGGGGTCAGAACTCCAGATAGGATTTCAACGGTGAATTAGTTAGCACTCCGTATTTGTTAAAATAGTCAGTAGAAGTGTTCTTTTCTTTGCCTATACGAGAAATTAATGAATAAGATTCTTTTGTTTCATTGTTGTATTTTGACTAAATCCATCTTTCTACTTTGCAGGAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</genome_strand>
        <mrna_strand>GGAAATGATGAAAATGCGTTCTGTTTTATGTCTCCTGGGACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGCGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCACACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E328232" ref_strand="+" ref_description="SGN-E328232 [cTOC-21-B21]">
      <seq>ttaattggaagcacgcaacgaaacctccaataaagatgccgtttaggaaggttgaaaactgcaaccaagttgtcaagattgggaagcagttgaagctttcccttgtaaatgtgggaggaaacgattttgtccaagggaataagaagcttatacttgctttcctgtggcagttgatgaggtttaatatgcttcagcttttgaagaacttgagatcgcgtttccgagggaaggagattactgatgctgatattctctcttgggcaaacaaaaaagtcaaaaacactggaagaacatctaaaatggagagttttaaggataagagcctttcaaatggattgttctttctcgagcttctcagtgctgtggagccaagggttgttaattggaatcttgtcaccaagggtgaaagtgatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgctttcactgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="62565" stop="65493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62865" g_stop="63020" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63021" i_stop="63696" i_length="676">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63697" g_stop="63854" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="314" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63855" i_stop="63939" i_length="85">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63940" g_stop="64036" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="411" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64442" g_stop="64533" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="503" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64957" g_stop="65193" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="740" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E328232" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62865" e_stop="63020"/>
          <exon e_start="63697" e_stop="63854"/>
          <exon e_start="63940" e_stop="64036"/>
          <exon e_start="64442" e_stop="64533"/>
          <exon e_start="64957" e_stop="65193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTGGAAGCACGCAACGAAACCTCCAATAAAGATGCCGTTTAGGAAGGTTGAAAACTGCAACCAAGTTGTCAAGATTGGGAAGCAGTTGAAGCTTTCCCTTGTAAATGTGGGAGGAAACGATTTTGTCCAAGGGAATAAGAAGCTTATACTTGGTAATGTCTCAAATCCGTTTTGTTTGTTTCACATGTGAATTGTGAGGCTTTATTCCCTTCTTGTCTATGTGTGAACATAATCACTTCAAAGATTTATGAGCTCCCAAGATTCTATGATTTAATACAATTGGGCTATTACTTTATTCAAGCTTATTGATGGTATTATGTATTATAAATGATTCCATCAAGGAACTTTTGGGTTGTTTTCCTACTATAATCATTCTCTGTGTGATGTGTATAATGATTCATCTTCAATAAGCTAGCAAGCTAAGACACAACATTTTTCTTACATAGTAAGACGTGTCCAGTTATTGTGGTGCTAAAAGTAAAGAAATCTTCCAGGACCCTGTAAATGAGTAGTCTCGAAAATTGGATTATAATTTTAACCAATGCGGAATTTTAGTTGTATTATTCTCAAGGCTTGTTAATGTGGTTGCACTTATTGAATCATCATAATTCATGGTTTAGCAGTCTTACCTAATATGTGAGCCCCTCATTATTGATGATCTGTTATTATGCATCCTTAGCAGTGAACTTTTTGATCTTGTGTGTTTTTTCATGCAACTAAATACCTTAGTTTTTCTTCTTTGAGTGATATGCTTTACGACATATGTAAGCCTTGTATTAGTGCTTCTTAGCACATCACTTATGTATTCATATATATATTCTTTTCCAGCTTTCCTGTGGCAGTTGATGAGGTTTAATATGCTTCAGCTTTTGAAGAACTTGAGATCGCGTTTCCGAGGGAAGGAGATTACTGATGCTGATATTCTCTCTTGGGCAAACAAAAAAGTCAAAAACACTGGAAGAACATCTAAAATGGAGAGTTTTAAGGTGAAGTATCACCAGTTCCTGTTCAATTGGCGTAAGTTTCAACTTTGTCTGTGATTTTAACTTGCAATTAGTGGTTTTTGTTTAGGATAAGAGCCTTTCAAATGGATTGTTCTTTCTCGAGCTTCTCAGTGCTGTGGAGCCAAGGGTTGTTAATTGGAATCTTGTCACCAAGGGTGAAAGTGGTATGGAGTTTATTTGTGCAAAATTTAGTATCTCGTCTTTTTTTCTCTTCTTGGGCATGCAGGCAGTCACTCTCCGTTACTGAACTGACAGAGTCTTCTCTTTCACTTACACAATCAAGAATGCCAACTTGCCCTTGCAATATTGAATCAACTTTCTAGCGTGAACTACTAGCTTTGAACTCTTCCTTAGTTTATGGATTGAGGAATTTGAATTTCTAGAGAGTGCAACTTACTTTCTAGGCTTTTAATGCTTGCGGTCTTCTATCTAACATCATCCAAAAGAATATCAAGTTTCTCAAAAGGGTCATAGTGCAACAGGGTTTTACACATTCTGATTTTTCATTCTACTTGGTCATCTTATGGGATGCAGTGCTCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAAC</genome_strand>
        <mrna_strand>TTAATTGGAAGCACGCAACGAAACCTCCAATAAAGATGCCGTTTAGGAAGGTTGAAAACTGCAACCAAGTTGTCAAGATTGGGAAGCAGTTGAAGCTTTCCCTTGTAAATGTGGGAGGAAACGATTTTGTCCAAGGGAATAAGAAGCTTATACTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCTGTGGCAGTTGATGAGGTTTAATATGCTTCAGCTTTTGAAGAACTTGAGATCGCGTTTCCGAGGGAAGGAGATTACTGATGCTGATATTCTCTCTTGGGCAAACAAAAAAGTCAAAAACACTGGAAGAACATCTAAAATGGAGAGTTTTAAG.....................................................................................GATAAGAGCCTTTCAAATGGATTGTTCTTTCTCGAGCTTCTCAGTGCTGTGGAGCCAAGGGTTGTTAATTGGAATCTTGTCACCAAGGGTGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTTCACTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E257318" ref_strand="+" ref_description="SGN-E257318 [cLEG-46-H12]">
      <seq>accaagggtgaaagtgatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgaggacgcaccatctgatactactgaagtatcacaagtggagttggctgctgacaacgcaccatctgatactaccgaagggtcaaaattgggagttggctgctgacnacgcaccatctgatactactgaagtgtttaaaccagaagtggctgctgaggacgcactgtctgatactactgaagggtcaaaattggagttgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63721" stop="65955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64021" g_stop="64036" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64442" g_stop="64533" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="108" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64957" g_stop="65606" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="758" r_length="650" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E257318" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64021" e_stop="64036"/>
          <exon e_start="64442" e_stop="64533"/>
          <exon e_start="64957" e_stop="65606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGGGTGAAAGTGGTATGGAGTTTATTTGTGCAAAATTTAGTATCTCGTCTTTTTTTCTCTTCTTGGGCATGCAGGCAGTCACTCTCCGTTACTGAACTGACAGAGTCTTCTCTTTCACTTACACAATCAAGAATGCCAACTTGCCCTTGCAATATTGAATCAACTTTCTAGCGTGAACTACTAGCTTTGAACTCTTCCTTAGTTTATGGATTGAGGAATTTGAATTTCTAGAGAGTGCAACTTACTTTCTAGGCTTTTAATGCTTGCGGTCTTCTATCTAACATCATCCAAAAGAATATCAAGTTTCTCAAAAGGGTCATAGTGCAACAGGGTTTTACACATTCTGATTTTTCATTCTACTTGGTCATCTTATGGGATGCAGTGCTCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATT-GGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGA</genome_strand>
        <mrna_strand>ACCAAGGGTGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGGAGTTGGCTGCTGACNACGCACCATCTGATACTACTGAAGTGTTTAAACCAGAAGTGGCTGCTGAGGACGCACTGTCTGATACTACTGAAGGGTCAAAATTGGAGTT-GCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E261110" ref_strand="+" ref_description="SGN-E261110 [cLEG-65-K24]">
      <seq>accaagggtgaaagtgatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgangacgcaccatctgatactactgaagtatcacaaagtggagttggctgctgacnacgcaccatctgatactaccgaagggtcaaaattggnagtggctgctgacaacgcaccatctgatactactgaagtgttaaaaccanaagtggctgctgaggacgcactgtctgatactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63721" stop="65929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64021" g_stop="64036" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64442" g_stop="64533" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="108" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64957" g_stop="65578" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="731" r_length="623" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E261110" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64021" e_stop="64036"/>
          <exon e_start="64442" e_stop="64533"/>
          <exon e_start="64957" e_stop="65578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGGGTGAAAGTGGTATGGAGTTTATTTGTGCAAAATTTAGTATCTCGTCTTTTTTTCTCTTCTTGGGCATGCAGGCAGTCACTCTCCGTTACTGAACTGACAGAGTCTTCTCTTTCACTTACACAATCAAGAATGCCAACTTGCCCTTGCAATATTGAATCAACTTTCTAGCGTGAACTACTAGCTTTGAACTCTTCCTTAGTTTATGGATTGAGGAATTTGAATTTCTAGAGAGTGCAACTTACTTTCTAGGCTTTTAATGCTTGCGGTCTTCTATCTAACATCATCCAAAAGAATATCAAGTTTCTCAAAAGGGTCATAGTGCAACAGGGTTTTACACATTCTGATTTTTCATTCTACTTGGTCATCTTATGGGATGCAGTGCTCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCAC-AAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTG</genome_strand>
        <mrna_strand>ACCAAGGGTGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGANGACGCACCATCTGATACTACTGAAGTATCACAAAGTGGAGTTGGCTGCTGACNACGCACCATCTGATACTACCGAAGGGTCAAAATTGGNAGTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAAACCANAAGTGGCTGCTGAGGACGCACTGTCTGATACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E258070" ref_strand="+" ref_description="SGN-E258070 [cLEG-48-C22]">
      <seq>accaagggtgaaagtgatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaaagttcaaagttgaagttggctgctaacgacactccatctgatactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="63721" stop="65673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64021" g_stop="64036" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405">
            <donor d_prob="0.896" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64442" g_stop="64533" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="108" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64957" g_stop="65373" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="525" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E258070" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64021" e_stop="64036"/>
          <exon e_start="64442" e_stop="64533"/>
          <exon e_start="64957" e_stop="65373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGGGTGAAAGTGGTATGGAGTTTATTTGTGCAAAATTTAGTATCTCGTCTTTTTTTCTCTTCTTGGGCATGCAGGCAGTCACTCTCCGTTACTGAACTGACAGAGTCTTCTCTTTCACTTACACAATCAAGAATGCCAACTTGCCCTTGCAATATTGAATCAACTTTCTAGCGTGAACTACTAGCTTTGAACTCTTCCTTAGTTTATGGATTGAGGAATTTGAATTTCTAGAGAGTGCAACTTACTTTCTAGGCTTTTAATGCTTGCGGTCTTCTATCTAACATCATCCAAAAGAATATCAAGTTTCTCAAAAGGGTCATAGTGCAACAGGGTTTTACACATTCTGATTTTTCATTCTACTTGGTCATCTTATGGGATGCAGTGCTCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACT</genome_strand>
        <mrna_strand>ACCAAGGGTGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAAGTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E259957" ref_strand="+" ref_description="SGN-E259957 [cLEG-51-B23]">
      <seq>tccaaactaaaatttcttttgttctgtgacagatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgangacgcaccatctgatactactgaagtatcacaagtggagttggctgctgacnacgcaccatctgatactaccgaangggtcaaaattggagttggctgctgacnacgcaccatctgatactactgaagtgttaaaacagaagtggctgctgaggacgcactgtctgatactactgaagggtcaaaattggagttggctgctgangacgcaccgtctgatacgactgaagggtcaaacttggagttggctactaccgatgcaccatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64110" stop="65972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64410" g_stop="64533" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65672" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="840" r_length="716" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E259957" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64410" e_stop="64533"/>
          <exon e_start="64957" e_stop="65672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAA-GGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTGAAGGGTCAAACTTGGAGTTGGCTACTACCGATGCACCATCTGA</genome_strand>
        <mrna_strand>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGANGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACNACGCACCATCTGATACTACCGAANGGGTCAAAATTGGAGTTGGCTGCTGACNACGCACCATCTGATACTACTGAAGTGTTAAA-ACAGAAGTGGCTGCTGAGGACGCACTGTCTGATACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGANGACGCACCGTCTGATACGACTGAAGGGTCAAACTTGGAGTTGGCTACTACCGATGCACCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E259860" ref_strand="+" ref_description="SGN-E259860 [cLEG-51-B22]">
      <seq>tccaaactaaaatttcttttgttctgtgacagatgaggaaaagaagttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgangacgcaccatctgatactactgaagtatcacaagtggagttggctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64110" stop="65752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64410" g_stop="64533" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65452" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="620" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E259860" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64410" e_stop="64533"/>
          <exon e_start="64957" e_stop="65452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTG</genome_strand>
        <mrna_strand>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGANGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E255162" ref_strand="+" ref_description="SGN-E255162 [cLEG-31-O11]">
      <seq>gggcctgcagggttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64155" stop="65614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64444" g_stop="64533" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65314" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="448" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E255162" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64444" e_stop="64533"/>
          <exon e_start="64957" e_stop="65314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTG</genome_strand>
        <mrna_strand>GGGCCTGCAGGGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E262905" ref_strand="+" ref_description="SGN-E262905 [cLEG-59-L13]">
      <seq>ttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgaggacgcaccatctgatactactgaagtatcacaagtggagttggctgctgacaacgcaccatctgatactaccgaagggtcaaaattggagttggctgctgacaacgcaccatctgatactactgaagtgttaaaaccagagttggctgctgaggacgcactgtctgatactactgaagggtcaaaattggnagttggctgctngagacgcaccgtctgatacgactgaagggtcaaactttggagttggctactaccgatgcaccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64156" stop="65971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64456" g_stop="64533" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65671" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="795" r_length="717" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E262905" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64456" e_stop="64533"/>
          <exon e_start="64957" e_stop="65671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGG-AGTTGGCTGCTGAGGACGCACCGTCTGATACGACTGAAGGGTCAAAC-TTGGAGTTGGCTACTACCGATGCACCATCTG</genome_strand>
        <mrna_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAAACCAGAGTTGGCTGCTGAGGACGCACTGTCTGATACTACTGAAGGGTCAAAATTGGNAGTTGGCTGCTNGAGACGCACCGTCTGATACGACTGAAGGGTCAAACTTTGGAGTTGGCTACTACCGATGCACCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E375671" ref_strand="+" ref_description="SGN-E375671 [TUS-35-O9]">
      <seq>ttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatcatggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgaggacgcaccatctgatactactgaagtatcacaagtggagttggctgctgacaacgcaccatctgatactaccgaagggtcaaaattggagttggctgctgacaacgcaccatctgatactactgaagttgtaaaaccagagttggctgctgangacgcactgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64156" stop="65837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64456" g_stop="64533" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65531" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="653" r_length="575" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65532" i_stop="65581" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.144" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65582" g_stop="65619" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="690" r_length="37" r_score="0.816"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E375671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64456" e_stop="64533"/>
          <exon e_start="64957" e_stop="65531"/>
          <exon e_start="65582" e_stop="65619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCT</genome_strand>
        <mrna_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGT..................................................TGT-AAAACCAGAGTTGGCTGCTGANGACGCACTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E257847" ref_strand="+" ref_description="SGN-E257847 [cLEG-39-O6]">
      <seq>ttgaatgctacctatatcatcagtgttgcacggaaacttgggtgttctatctttctgttgcctgaggatatggtggaggttaaccaaaagatgatcctcactctcactgccagcatcatgtactggagccttcagcagacagcggacgatatagagtctcctgcgagtactgttgcatctgatgcatcaccagcaagatctatgaatggctctatgtccccctatactgctgcttcacctgatgcataccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgatgacgcaccatctgatactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64156" stop="65724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64456" g_stop="64533" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64957" g_stop="65424" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="546" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E257847" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64456" e_stop="64533"/>
          <exon e_start="64957" e_stop="65424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAGGTGAGTATGCTGTCATTTTGAATTGCTGCTAATAGTTCCTGTGTCCATTATAGTAGGCTTAACAAGAACCAGATAGACACAACACAAACTTTCCAAGGTAAAAAGAATTTAAAACCTTCTAGGACTTTAAGACATGTTTAAAACAGAGACTATCTGACAAGTGAGACTAGCTCTAGTGGTTGAGCATCTCCACCATGAATAGGTAGGTTGAAGGTTTGAGTCACGCTGGATGGAGGGTAAATGGGAACACTATTGATCCTTCTGATAGGGTGGGTGGGTAAAAAAACAAACTATTCTTTGTCCACTTACAATACAGAGAAAAGTATGCCCGCGTCTGCTTCATCCTATATTCTTCTCTGTGCAACAATGTATTCCTGAGACCTGATTATGACACTAATCCTTCTTGGGGTCACGTGTGGACAGGTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACT</genome_strand>
        <mrna_strand>TTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATGGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATACCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGATGACGCACCATCTGATACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E269466" ref_strand="+" ref_description="SGN-E269466 [cLEM-2-B17]">
      <seq>tgatgcatcccctgcaccttcaattagtggagcatcatcagctactcctgacgcatctccagcaccatctgtaaacggagatgaggaaagcccacttattactgaagtgtcaaagttggagttggttgctgactatgcaccatctgatactcctgaagtgtcaaagtcgaagttggctgctgatgatgcaccatttgatgccactgaagtttcaaagttgaagttggctgctaacgacactccatctgatactactgaagtgtcaaaagtggagttgactgctgaggacgcaccatctgatactactgaagtatcacaagtggagttggctgctgacaacgcaccatctgatactaccgaagggtcaaaattggagttggctgctgacaacgcaccatctgatactactgaagtgttaaaaccagagttggctgctgaggacgcactgtctgatactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="64818" stop="65929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65118" g_stop="65531" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65532" i_stop="65581" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.144" a_score="0.85"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65582" g_stop="65629" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="461" r_length="47" r_score="0.854"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E269466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65118" e_stop="65531"/>
          <exon e_start="65582" e_stop="65629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTG</genome_strand>
        <mrna_strand>TGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGT..................................................-GTTAAAACCAGAGTTGGCTGCTGAGGACGCACTGTCTGATACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E375670" ref_strand="+" ref_description="SGN-E375670 [TUS-35-O9]">
      <seq>ttttttttttttttttactgagaatattttcaaaatataaatcatacatctaatgaatcaaattctctacttacattcagatgagaataaaaaaaaaactacaaaaaagtagcaggaaacaaaattggaaatagtacagttgattcttccagaggtactatcgtgctgagttgataacattgtgtactttttatctatatttgtatctaaaagcatttcgcatttttgagtataattcatctaaaacacatgtatgttctcttcgtttatgttcttcttgctttctcccgctagcttattatttgtccctcgtagctgtaaagacgaaaacatttaactatagttcattatctggttctgtaccttcattttcaacttcatgagaagaggctgtactgttgttgtgtatcctcaagtagtgaggatgagggtgcatctgatggtatctctacattttgagactgcattggagatgctaacgtatcaaatggtgcatcgtcagcaaccaactcgagctttgacacttcagtaccatcagatggtgcatcggtagtagccaactccaagtttgacccttcagtcgtatcagacggtgcgtcctcagcagccaactccaattttgacccttcagtagtatcagacagtgcgtcctcagcagccaactctggtttaacacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="83619" stop="65191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66207" g_stop="65526" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E375670" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66207" e_stop="65526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAAGTATGAATTACTGAGAATATTTTCAAAATATAAATCATACATCTAATGAATCAAATTCTCTACTTACATTCAGATGAGAATAAAAAAAAAAACTACAAAAAAGTAGCAGGAAACAAAATTGGAAATAGTACAGTTGATTCTTCCAGAGGTACTATCGTGCTGAGTTGATAACATTGTGTACTTTTTATCTATATTTGTATCTAAAAGCATTTCGCATTTTTGAGTATAATTCATCTAAAACACATGTATGTTCTCTTCGTTTATGTTCTTCTTGCTTTCTCCCGCTAGCTTATTATTTGTCCCTCGTAGCTGTAAAGACGAAAACATTTAACTATAGTTCATTATCTGGTTCTGTACCTTCATTTTCAACTTCATGAGAAGAGGCTGTACTGTTGTTGTGTATCCTCAAGTAGTGAGGATGAGGGTGCATCTGATGGTATCTCTACATTTTGAGACTGCATTGGAGATGCTAACGTATCAAATGGTGCATCGTCAGCAACCAACTCGAGCTTTGACACTTCAGTACCATCAGATGGTGCATCGGTAGTAGCCAACTCCAAGTTTGACCCTTCAGTCGTATCAGACGGTGCGTCCTCAGCAGCCAACTCCAATTTTGACCCTTCAGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTACTGAGAATATTTTCAAAATATAAATCATACATCTAATGAATCAAATTCTCTACTTACATTCAGATGAGAATAAAA-AAAAAACTACAAAAAAGTAGCAGGAAACAAAATTGGAAATAGTACAGTTGATTCTTCCAGAGGTACTATCGTGCTGAGTTGATAACATTGTGTACTTTTTATCTATATTTGTATCTAAAAGCATTTCGCATTTTTGAGTATAATTCATCTAAAACACATGTATGTTCTCTTCGTTTATGTTCTTCTTGCTTTCTCCCGCTAGCTTATTATTTGTCCCTCGTAGCTGTAAAGACGAAAACATTTAACTATAGTTCATTATCTGGTTCTGTACCTTCATTTTCAACTTCATGAGAAGAGGCTGTACTGTTGTTGTGTATCCTCAAGTAGTGAGGATGAGGGTGCATCTGATGGTATCTCTACATTTTGAGACTGCATTGGAGATGCTAACGTATCAAATGGTGCATCGTCAGCAACCAACTCGAGCTTTGACACTTCAGTACCATCAGATGGTGCATCGGTAGTAGCCAACTCCAAGTTTGACCCTTCAGTCGTATCAGACGGTGCGTCCTCAGCAGCCAACTCCAATTTTGACCCTTCAGTAGT-ATCAGACAGTGCGTCCTCAGCAGCCAACTCTGGTTTAACACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E729971" ref_strand="+" ref_description="SGN-E729971 [LA22CF06]">
      <seq>agaaaatgtcatcaattaacatttgtctctctataatcctctctctttgctactcctatttcatatcatccaaaatccccaaaggtattccaaggctaatttcacttcttcccattttttacctcttcacaattctcccactttacttttcttcttcatttcttatagcactcaccactttcttcattacttggcttgccaatttcaaactcctcctttttgcctttaatcaaggccctctttcttcattcacacaaaaaaatgcaacaaatcttcctatattcatttttatggcttctcttcctctaagatccaaacaaaatatgaaaaaccccaccaagaaaatcccattaaatctaggtttagagtttgtcctttttgcaattttcttagagttgacttttcatcataaaagtcaactccaccctaaattaatcttgatttgttattgtttcttggtttttctcatgattgatattcttgtagcattatctagcaatattgttaaaataatcctagtggggtttgagttagaattagagtcaccatcaaatgaaccttatttatcaacttcccttcaagatttttggggaaataggtggaatctcaccgtaaccaatacacttcgtctcaccgtatacaacccggtaaggtcagtattgtcagaagttgtcgggaggatgtgtgccctacgtgttgccgtgctggcaactttcgtcgtatccggtttaatgcatgagcttttgttttattacgttaatcgcgtgagcccttcgtgggaaatgacgggcttttttgtgttacacgggctttgtgtgatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="68491" stop="69913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68791" g_stop="69613" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E729971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68791" e_stop="69613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGTCATCAATTAACATTTGTCTCTCTATAATCCTCTCTCTTTGCTACTCCTATTTCATATCATCCAAAATCCCCAAAGGTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGT</genome_strand>
        <mrna_strand>AGAAAATGTCATCAATTAACATTTGTCTCTCTATAATCCTCTCTCTTTGCTACTCCTATTTCATATCATCCAAAATCCCCAAAGGTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E213882" ref_strand="+" ref_description="SGN-E213882 [cLEC-76-F24]">
      <seq>atccccaaaggtattccaaggctaatttcacttcttcccattttttacctcttcacaattctcccactttacttttcttcttcatttcttatagcactcaccactttcttcattacttggcttgccaatttcaaactcctcctttttgcctttaatcaaggccctctttcttcattcacacaaaaaaatgcaacaaatcttcctatattcatttttatggcttctcttcctctaagatccaaacaaaatatgaaaaaccccaccaagaaaatcccattaaatctaggtttagagtttgtcctttttgcaattttcttagagttgacttttcatcataaaagtcaactccaccctaaattaatcttgatttgttattgtttcttggtttttctcatgattgatattcttgtagcattatctagcaatattgttaaaataatcctagtggggtttgagttagaattagagtcaccatcaaatgaaccttatttatcaacttcccttcaagatttttggggaaataggtggaatctcaccgtaaccaatacacttcgtctcaccgtatacaacccggtaaggtcagtattgtcagaagttgtcggggaggatgtgtgccctacgtgttgccgtgctggcaactttcgtcgtatccggtttaatgcatgagcttttgttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="68565" stop="69843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68865" g_stop="69543" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E213882" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68865" e_stop="69543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCAAAGGTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTC-GGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATT</genome_strand>
        <mrna_strand>ATCCCCAAAGGTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E702835" ref_strand="+" ref_description="SGN-E702835 [FA19DC11]">
      <seq>gtattccaaggctaatttcacttcttcccattttttacctcttcacaattctcccactttacttttcttcttcatttcttatagcactcaccactttcttcattacttggcttgccaatttcaaactcctcctttttgcctttaatcaaggccctctttcttcattcacacaaaaaaatgcaacaaatcttcctatattcatttttatggcttctcttcctctaagatccaaacaaaatatgaaaaaccccaccaagaaaatcccattaaatctaggtttagagtttgtcctttttgcaattttcttagagttgacttttcatcataaaagtcaactccaccctaaattaatcttgatttgttattgtttcttggtttttctcatgattgatattcttgtagcattatctagcaatattgttaaaataatcctagtggggtttgagttagaattagagtcaccatcaaatgaaccttatttatcaacttcccttcaagatttttggggaaataggtggaatctcaccgtaaccaatacacttcgtctcaccgtatacaacccggtaaggtcagtattgtcagaagttgtcgggaggatgtgtgccctacgtgttgccgtgctggcaactttcgtcgtatccggtttaatgcatgagcttttgttttattacgttaatcgcgtgagcccttcgtgggaaatgacgggtttttttgtgttacacgggctttgtgtgatggtggagattggtgttaagagggctttaaaggatacgtggcggctaccgggctttgtttcgggcctgttaacggttgggtttgtggttgttactgcttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="68575" stop="70013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68875" g_stop="69714" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E702835" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68875" e_stop="69714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGTGGAGATTGGTGTTAAGAGGGCTTTAAAGGATACGTGGCGGCTACCGGGCTTTGTTTCGGGCCTGTTAACGGTTGGGTTTGTGGTTGTTACTGCTTTTGGGC</genome_strand>
        <mrna_strand>GTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGTTTTTTTGTGTTACACGGGCTTTGTGTGATGGTGGAGATTGGTGTTAAGAGGGCTTTAAAGGATACGTGGCGGCTACCGGGCTTTGTTTCGGGCCTGTTAACGGTTGGGTTTGTGGTTGTTACTGCTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E689239" ref_strand="+" ref_description="SGN-E689239 [t3_tus_80_L06]">
      <seq>cttttaatttcacttcttcccattttttacctcttcacaattctcccactttacttttcttcttcatttcttatagcactcaccactttcttcattacttggcttgccaatttcaaactcctcctttttgcctttaatcaaggccctctttcttcattcacacaaaaaaatgcaacaaatcttcctatattcatttttatggcttctcttcctctaagatccaaacaaaatatgaaaaaccccaccaagaaaatcccattaaatctaggtttagagtttgtcctttttgcaattttcttagagttgacttttcatcataaaagtcaactccaccctaaattaatcttgatttgttattgtttcttggtttttctcatgattgatattcttgtagcattatctagcaatattgttaaaataatcctagtggggtttgagttagaattagagtcaccatcaaatgaaccttatttatcaacttcccttcaagatttttggggaaataggtggaatctcaccgtaaccaatacacttcgtctcaccgtatacaacccggtaaggtcagtattgtcagaagttgtcgggaggatgtgtgccctacgtgttgccgtgctggcaactttcgtcgtatccggtttaatgcatgagcttttgttttattacgttaatcgcgtgagcccttcgtgggaaatgacgggcttttttgtgttacacgggctttgtgtgatggtggagattggtgttaagaaggctttaaaggatacgtggcggctaccgggctttgtttcgggcctgttaacgggttgggttggggttgttactgcttttgggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="68587" stop="70017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68883" g_stop="69717" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E689239" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68883" e_stop="69717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGTGGAGATTGGTGTTAAGAGGGCTTTAAAGGATACGTGGCGGCTACCGGGCTTTGTTTCGGGCCTGTTAACGGTTGGGTTTGTGGTTGTTACTGCTTTTGGGCTTT</genome_strand>
        <mrna_strand>CTTTTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGTGGAGATTGGTGTTAAGAAGGCTTTAAAGGATACGTGGCGGCTACCGGGCTTTGTTTCGGGCCTGTTAACGGGTTGGGTTGGGGTTGTTACTGCTTTTGGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E325783" ref_strand="+" ref_description="SGN-E325783 [cTOC-12-M13]">
      <seq>ctaatttctcttcttcccattttttacctcttcacaattgtcccactgtacttttcttcttcatttcttatagcactcaccactttcttcattacttggcttgccaatttcaaactcctcctttttgcctttaatcaaggccctctttcttcattcacacaaaaaaatgcaacaaatcttcctatattcatttttatggcttctcttcctctaagatccaaacaaaatatgaaaaaccccaccaagaaaatcccattaaatctaggtttagagtttgtcctttttgcaattttcttagagttgacttttcatcataaaagtcaactccaccctaaattaatcttgatttgttattgtttcttggtttttctcatgattgatattcttgtagcattatctagcaatattgttaaaataatcctagtggggtttgagttagaattagagtcaccatcaaatgaaccttatttatcaacttcccttcaagatttttggggaaataggtggaatctcaccgtaaccaatacacttcgtctcaccgtatacaacccggtaaggtcagtattgtcagaagttgtcgggaggatgtgtgccctacgtgttgccgtgctggcaactttcgtcgtatccggtttaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="68586" stop="69826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68886" g_stop="69526" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E325783" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68886" e_stop="69526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCA</genome_strand>
        <mrna_strand>CTAATTTCTCTTCTTCCCATTTTTTACCTCTTCACAATTGTCCCACTGTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="70976" stop="70081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70677" g_stop="70355" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70677" e_stop="70355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTATGCATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAAAAAGTTGTATTTCACTGCAATTGTATAATTCACAATTGTATGATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACTCGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAATG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E315865" ref_strand="+" ref_description="SGN-E315865 [cTOA-26-A6]">
      <seq>tacagaattttgggtaaactaaaatacagagaaagcaacaatggcgattttagggctctcaaatccagcagaattagcttcttctccgtcttcttccttagctttttctcataggttgcattcttccttcattcctaaacaatgcttcttcaccggtgttcgccggaaaagtttttgccggcctcaacgtttcagcatttcaagttcattcactccgatggattctgctaaaattaaggtcgtcggcgtcggtggaggtggaaacaatgccgttaaccgtatgattggtagtggtttacagggtgttgacttctatgctataaacacggatgctcaagcactggtacagtctgctgccgagaacccacttcaaattggagaacttctgactcgtgggcttggtactggtggcaatcctcttttaagggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="71971" stop="75391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72271" g_stop="72571" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74572" g_stop="74671" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="401" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75019" g_stop="75091" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="474" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E315865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72271" e_stop="72571"/>
          <exon e_start="74572" e_stop="74671"/>
          <exon e_start="75019" e_stop="75091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAGGTATCTATCCTCTTTTCCTTTTTGTCCCTTTCTCTTTTTCTCAATTTTGTTGCTTTATGGTAAAAACACGAGTTTTGTTGTAGTATCTTATCTACTGTTTCAAGTTTTGTTGCTTTCTCAGTGTCTTTATGTGCTATTTCCAGTAAAAAAGGATACACTTGGATTTTATTTAATTTTTGGTTATTTGTTCATCTTGTAGATACATATTCAAGAGAAATGTTTTCAAGTTAGCTAGCTATTGAAACTCCAAAAGCATTGAGGATAGAAATGAGAGTAAAAAGAAAAAGGAATTAGTTTCCATAGGAACTCAGTAAGAGCATTTTCGTTTGGTTCATATTTTAACTGTTATACATGTCATGAATTTTGATAGTTCTGTTTCTGAAGTTATTGATCAGAATATGATTGGTTGCCTGTTTCTGGCTTCCTTGATTGGTTTTGGGAACCACTCTGTCTTCAAGTGAGGCCTAAACTTCTTGTTGTATGCCTATTTGTCGATATTTGCATCAAAGTTTGTATCTCAATGCATAATGAAGAAATAATAGGAGAAAGGTATTTTATAGGCTTTCTTATCCAGGCTCGGCGAGAATAAGACGAGAGACTATGCTCTATGCTTTGTTCCTGCCACGTCTGGAGCTACAGTGTAACATGGGGTTCAGGCGAACCAAGTAGCTTTTGCGTAGACTTGTATTTGTACTAAAAACTCAAGAAACAAATGTATTGTTGTTGACGTGTGAAACAACACACAAAAACAACCGGATAGTTCAGTGGTGCGTGCGTGGGCTGCCGAAGCTTTTGTGTCCCCTAGCTATATGGGTTTGAAACTCGGTAGCTGCGCGTCATTTTTAGTTGAATTTTTGCTATATATGCTCTCTTTCTGAAAGGGAATATTCATTACTCTTTATTAGTTTCTCATAGATCCTTTTTTCCTTTCTATATACAATTTTTTTTTTCGGAAAAGAAAAAACCATTAAATTAATAATTGAAAAAACCAAAAAAAGTTAAATATATAGTTGTTGATGTGTGAAACAACATACGAAAATAATCGGATAGTTCAGTGGTGCGTGCGTGGGCTGTGAAGCTCTTGTGTCCCCTAGATATATGGGTTCGAAACTCGGTAGCCGCGTGTCATTTGTAGTTGATTTTTTTGCTATATATGCTCTCTTTCTAGAAGAGAATATTCATTACACTCTATTAGTTTGTCATAGTTCCTTTTTTCCTTTCTATGTGCAGTTTTTTTCCGAAAAAGAAAAAATCATTAAATTGATTATTGAAAAAACCAAATAAGTAAATTGTTGTACTGAAGTGCCATCGGTCATGTATAGTTTGCAAAACATGATAAGTATGATGATAGGTACTTATTCAAGTACAGTTTCAAAAAATTTATATAGTATTCAAGTAGTTTGTGATATTGAGTTTGTCCTTTTTTTTAATATAACAAATATCAGTGTTTGTTCATTAGTTTGGTGATTGTTAAACAATAGCTTGAGGTCATTGTCGTATCTTAAAATTCAGAACCCGTAAACCTAAAATCCTGGCTCCCCCTCTATTACTTCCTTTACTTTAGAACATAGGATCTCATAACAATCTTCTTCTTTCATTTGACTTGAGATTTCCTTTTATCTTAGCAACAAAGTGGTTACCCTTGGATTCTCTGTAACCATCTAATGATTGATTTGTGGGCATTTTGTTGACTGCCTAATTCTTTTAATGCGAATTTCTAATTCTTTATCTTCCAGAAAAGCATATGTTGGAATACAATGCCATTACAAGGTTGCATGTATACTTGTAGTGCTGGTTTACAAATTTGTGCCATGAAGAGAAGCTAGAAATATCCCTTACAAAATAAAGTAAAGGAAAGCTAGAAATTTCTTGTTGTCTATAGGATTTTTCGATCAGTTAGCTTTTTGTTATTATCTATTCTGAAAAAAAATGAAATGCCTTGTATGATCCCATCCCTTCATTTCATATGACAAATCTAAATGCTGCATGGCCAAAAATAGGGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTGGTTAGCACTCTTCTGTCTCTTTATAATGAAATTACTCTTTCATAATAGCTGTTTTTTCATTAATCAAATTCAACCTTGTTAAAAGAACTTCGGGAAAAACTAACATTAAGACAGTTATACTCTATCCTGTCTTTAGAAAATGACAGAGTATTACTTTATTATTATGTACATGGAATCATGTGGTGTCACATCTTGCTCTAGATGTAGATGCCTTTTGTTTTGCTATTGATTTTGAGGCTTATGTTCAATGGTTTAACAAGCACAACATTATTATGCTTCTTGATAAGCTAGTTAACTCTTTCTTTATTCGTAATGATTTGTTAAGTAAATCGCTTTTAGAGATGCAGGTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAA</genome_strand>
        <mrna_strand>TACAGAATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG...........................................................................................................................................................................................................................................................................................................................................................GTACTGGTGGCAATCCTCTTTTAAGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E709094" ref_strand="+" ref_description="SGN-E709094 [FA42CG02]">
      <seq>cgagaattttgggtaaactaaaatacagagaaagcaacaatggcgattttagggctctcaaatccagcagaattagcttcttctccgtcttcttccttagctttttctcataggttgcattcttccttcattcctaaacaatgcttcttcaccggtgttcgccggaaaagtttttgccggcctcaacgtttcagcatttcaagttcattcactccgatggattctgctaaaattaaggtcgtcggcgtcggtggaggtggaaacaatgccgttaaccgtatgattggtagtggtttacagggtgttgacttctatgctataaacacggatgctcaagcactggtacagtctgctgccgagaacccacttcaaattggagaacttctgactcgtgggcttggtactggtggcaatcctcttttaggggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaaaggttcagatatggttttcataacagcaggaatgggtggaggtacaggatctggtgcggctcctgttgtggctcaaatagcaaaagaagcaggttatttgactgttggtgttgttacatatccattcagctttgaaggacgtaaaagatctgtgcaggctctggaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctaagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtccgggtgtccaaggaatatctgatataatcactattccggggtttgtgaatgtggattttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="71974" stop="76662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72276" g_stop="72571" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="300" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74572" g_stop="74671" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="400" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75019" g_stop="75248" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="630" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75249" i_stop="75825" i_length="577">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75826" g_stop="75993" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="799" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76333" g_stop="76362" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="829" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E709094" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72276" e_stop="72571"/>
          <exon e_start="74572" e_stop="74671"/>
          <exon e_start="75019" e_stop="75248"/>
          <exon e_start="75826" e_stop="75993"/>
          <exon e_start="76333" e_stop="76362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAGGTATCTATCCTCTTTTCCTTTTTGTCCCTTTCTCTTTTTCTCAATTTTGTTGCTTTATGGTAAAAACACGAGTTTTGTTGTAGTATCTTATCTACTGTTTCAAGTTTTGTTGCTTTCTCAGTGTCTTTATGTGCTATTTCCAGTAAAAAAGGATACACTTGGATTTTATTTAATTTTTGGTTATTTGTTCATCTTGTAGATACATATTCAAGAGAAATGTTTTCAAGTTAGCTAGCTATTGAAACTCCAAAAGCATTGAGGATAGAAATGAGAGTAAAAAGAAAAAGGAATTAGTTTCCATAGGAACTCAGTAAGAGCATTTTCGTTTGGTTCATATTTTAACTGTTATACATGTCATGAATTTTGATAGTTCTGTTTCTGAAGTTATTGATCAGAATATGATTGGTTGCCTGTTTCTGGCTTCCTTGATTGGTTTTGGGAACCACTCTGTCTTCAAGTGAGGCCTAAACTTCTTGTTGTATGCCTATTTGTCGATATTTGCATCAAAGTTTGTATCTCAATGCATAATGAAGAAATAATAGGAGAAAGGTATTTTATAGGCTTTCTTATCCAGGCTCGGCGAGAATAAGACGAGAGACTATGCTCTATGCTTTGTTCCTGCCACGTCTGGAGCTACAGTGTAACATGGGGTTCAGGCGAACCAAGTAGCTTTTGCGTAGACTTGTATTTGTACTAAAAACTCAAGAAACAAATGTATTGTTGTTGACGTGTGAAACAACACACAAAAACAACCGGATAGTTCAGTGGTGCGTGCGTGGGCTGCCGAAGCTTTTGTGTCCCCTAGCTATATGGGTTTGAAACTCGGTAGCTGCGCGTCATTTTTAGTTGAATTTTTGCTATATATGCTCTCTTTCTGAAAGGGAATATTCATTACTCTTTATTAGTTTCTCATAGATCCTTTTTTCCTTTCTATATACAATTTTTTTTTTCGGAAAAGAAAAAACCATTAAATTAATAATTGAAAAAACCAAAAAAAGTTAAATATATAGTTGTTGATGTGTGAAACAACATACGAAAATAATCGGATAGTTCAGTGGTGCGTGCGTGGGCTGTGAAGCTCTTGTGTCCCCTAGATATATGGGTTCGAAACTCGGTAGCCGCGTGTCATTTGTAGTTGATTTTTTTGCTATATATGCTCTCTTTCTAGAAGAGAATATTCATTACACTCTATTAGTTTGTCATAGTTCCTTTTTTCCTTTCTATGTGCAGTTTTTTTCCGAAAAAGAAAAAATCATTAAATTGATTATTGAAAAAACCAAATAAGTAAATTGTTGTACTGAAGTGCCATCGGTCATGTATAGTTTGCAAAACATGATAAGTATGATGATAGGTACTTATTCAAGTACAGTTTCAAAAAATTTATATAGTATTCAAGTAGTTTGTGATATTGAGTTTGTCCTTTTTTTTAATATAACAAATATCAGTGTTTGTTCATTAGTTTGGTGATTGTTAAACAATAGCTTGAGGTCATTGTCGTATCTTAAAATTCAGAACCCGTAAACCTAAAATCCTGGCTCCCCCTCTATTACTTCCTTTACTTTAGAACATAGGATCTCATAACAATCTTCTTCTTTCATTTGACTTGAGATTTCCTTTTATCTTAGCAACAAAGTGGTTACCCTTGGATTCTCTGTAACCATCTAATGATTGATTTGTGGGCATTTTGTTGACTGCCTAATTCTTTTAATGCGAATTTCTAATTCTTTATCTTCCAGAAAAGCATATGTTGGAATACAATGCCATTACAAGGTTGCATGTATACTTGTAGTGCTGGTTTACAAATTTGTGCCATGAAGAGAAGCTAGAAATATCCCTTACAAAATAAAGTAAAGGAAAGCTAGAAATTTCTTGTTGTCTATAGGATTTTTCGATCAGTTAGCTTTTTGTTATTATCTATTCTGAAAAAAAATGAAATGCCTTGTATGATCCCATCCCTTCATTTCATATGACAAATCTAAATGCTGCATGGCCAAAAATAGGGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTGGTTAGCACTCTTCTGTCTCTTTATAATGAAATTACTCTTTCATAATAGCTGTTTTTTCATTAATCAAATTCAACCTTGTTAAAAGAACTTCGGGAAAAACTAACATTAAGACAGTTATACTCTATCCTGTCTTTAGAAAATGACAGAGTATTACTTTATTATTATGTACATGGAATCATGTGGTGTCACATCTTGCTCTAGATGTAGATGCCTTTTGTTTTGCTATTGATTTTGAGGCTTATGTTCAATGGTTTAACAAGCACAACATTATTATGCTTCTTGATAAGCTAGTTAACTCTTTCTTTATTCGTAATGATTTGTTAAGTAAATCGCTTTTAGAGATGCAGGTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAGGCAGGTCCCATTTTCAGTTCCTTGGAGACTAGTGATTTACTTCTTTTTCTGGACTTTTGGGGATCTTTCTGCTCCACATCAATTATAGAAGGTTGAAACATGAGGATATCCAAGACGATAAAAAAAGTTGCAAGAAAATAAAAAACAAGCAATTGGATTTCTTTAAATTCTTTTGAGGTTCTGGCTTAACTAGCTGTATCAGTATCCAAAAAAGGAAGAAGAGTAGGAAATCTTTTAGGAAGATGCATTTTCATTTCTTTTAATTACTGGAGACATGTTTCATGTGGAAGGGAGTGAGGTGAAGATGGCATGAGTTGTATGGTTGCGAGTTTATAGATTAACTGTTGAGATGCACTAGAAACTTATAGTGTTCCTTGATGTATCTAAAGGATATCAAGTGCTTTCTAAGGCGAAAATGTTCACATGCTCAAGCCTGAACAAGATTACTGTCTGATTTTCTTTTTTGTGCCAAATCCTACGTTCCTTTGTCATAAAGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCT-AGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCC</genome_strand>
        <mrna_strand>AATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG...........................................................................................................................................................................................................................................................................................................................................................GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCCGGGTGTCCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCGGGGTTTGTGAATGTGGATTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E729612" ref_strand="+" ref_description="SGN-E729612 [LA21CC10]">
      <seq>aaaatacagagaaagcaacaatggcgattttagggctctcaaatccagcagaattagcttcttctccgtcttcttccttagctttttctcataggttgcattcttccttcattcctaaacaatgcttcttcaccggtgttcgccggaaaagtttttgccggcctcaacgtttcagcatttcaagttcattcactccgatggattctgctaaaattaaggtcgtcggcgtcggtggaggtggaaacaatgccgttaaccgtatgattggtagtggtttacagggtgttgacttctatgctataaacacggatgctcaagcactggtacagtctgctgccgagaacccacttcaaattggagaacttctgactcgtgggcttggtactggtggcaatcctcttttaggggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaaaggttcagatatggttttcataacagcaggaatgggtggaggtacaggatctggtgcggctcctgttgtggctcaaatagcaaaagaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactattcctgggcttgtgaatgtggattttgccgatgtaaaggcagggatgaaaaactctggaactgcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="71991" stop="76703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72291" g_stop="72571" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74572" g_stop="74671" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="381" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75019" g_stop="75179" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="542" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75180" i_stop="75834" i_length="655">
            <donor d_prob="0.314" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75835" g_stop="75993" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="701" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76333" g_stop="76403" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="772" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E729612" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72291" e_stop="72571"/>
          <exon e_start="74572" e_stop="74671"/>
          <exon e_start="75019" e_stop="75179"/>
          <exon e_start="75835" e_stop="75993"/>
          <exon e_start="76333" e_stop="76403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAGGTATCTATCCTCTTTTCCTTTTTGTCCCTTTCTCTTTTTCTCAATTTTGTTGCTTTATGGTAAAAACACGAGTTTTGTTGTAGTATCTTATCTACTGTTTCAAGTTTTGTTGCTTTCTCAGTGTCTTTATGTGCTATTTCCAGTAAAAAAGGATACACTTGGATTTTATTTAATTTTTGGTTATTTGTTCATCTTGTAGATACATATTCAAGAGAAATGTTTTCAAGTTAGCTAGCTATTGAAACTCCAAAAGCATTGAGGATAGAAATGAGAGTAAAAAGAAAAAGGAATTAGTTTCCATAGGAACTCAGTAAGAGCATTTTCGTTTGGTTCATATTTTAACTGTTATACATGTCATGAATTTTGATAGTTCTGTTTCTGAAGTTATTGATCAGAATATGATTGGTTGCCTGTTTCTGGCTTCCTTGATTGGTTTTGGGAACCACTCTGTCTTCAAGTGAGGCCTAAACTTCTTGTTGTATGCCTATTTGTCGATATTTGCATCAAAGTTTGTATCTCAATGCATAATGAAGAAATAATAGGAGAAAGGTATTTTATAGGCTTTCTTATCCAGGCTCGGCGAGAATAAGACGAGAGACTATGCTCTATGCTTTGTTCCTGCCACGTCTGGAGCTACAGTGTAACATGGGGTTCAGGCGAACCAAGTAGCTTTTGCGTAGACTTGTATTTGTACTAAAAACTCAAGAAACAAATGTATTGTTGTTGACGTGTGAAACAACACACAAAAACAACCGGATAGTTCAGTGGTGCGTGCGTGGGCTGCCGAAGCTTTTGTGTCCCCTAGCTATATGGGTTTGAAACTCGGTAGCTGCGCGTCATTTTTAGTTGAATTTTTGCTATATATGCTCTCTTTCTGAAAGGGAATATTCATTACTCTTTATTAGTTTCTCATAGATCCTTTTTTCCTTTCTATATACAATTTTTTTTTTCGGAAAAGAAAAAACCATTAAATTAATAATTGAAAAAACCAAAAAAAGTTAAATATATAGTTGTTGATGTGTGAAACAACATACGAAAATAATCGGATAGTTCAGTGGTGCGTGCGTGGGCTGTGAAGCTCTTGTGTCCCCTAGATATATGGGTTCGAAACTCGGTAGCCGCGTGTCATTTGTAGTTGATTTTTTTGCTATATATGCTCTCTTTCTAGAAGAGAATATTCATTACACTCTATTAGTTTGTCATAGTTCCTTTTTTCCTTTCTATGTGCAGTTTTTTTCCGAAAAAGAAAAAATCATTAAATTGATTATTGAAAAAACCAAATAAGTAAATTGTTGTACTGAAGTGCCATCGGTCATGTATAGTTTGCAAAACATGATAAGTATGATGATAGGTACTTATTCAAGTACAGTTTCAAAAAATTTATATAGTATTCAAGTAGTTTGTGATATTGAGTTTGTCCTTTTTTTTAATATAACAAATATCAGTGTTTGTTCATTAGTTTGGTGATTGTTAAACAATAGCTTGAGGTCATTGTCGTATCTTAAAATTCAGAACCCGTAAACCTAAAATCCTGGCTCCCCCTCTATTACTTCCTTTACTTTAGAACATAGGATCTCATAACAATCTTCTTCTTTCATTTGACTTGAGATTTCCTTTTATCTTAGCAACAAAGTGGTTACCCTTGGATTCTCTGTAACCATCTAATGATTGATTTGTGGGCATTTTGTTGACTGCCTAATTCTTTTAATGCGAATTTCTAATTCTTTATCTTCCAGAAAAGCATATGTTGGAATACAATGCCATTACAAGGTTGCATGTATACTTGTAGTGCTGGTTTACAAATTTGTGCCATGAAGAGAAGCTAGAAATATCCCTTACAAAATAAAGTAAAGGAAAGCTAGAAATTTCTTGTTGTCTATAGGATTTTTCGATCAGTTAGCTTTTTGTTATTATCTATTCTGAAAAAAAATGAAATGCCTTGTATGATCCCATCCCTTCATTTCATATGACAAATCTAAATGCTGCATGGCCAAAAATAGGGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTGGTTAGCACTCTTCTGTCTCTTTATAATGAAATTACTCTTTCATAATAGCTGTTTTTTCATTAATCAAATTCAACCTTGTTAAAAGAACTTCGGGAAAAACTAACATTAAGACAGTTATACTCTATCCTGTCTTTAGAAAATGACAGAGTATTACTTTATTATTATGTACATGGAATCATGTGGTGTCACATCTTGCTCTAGATGTAGATGCCTTTTGTTTTGCTATTGATTTTGAGGCTTATGTTCAATGGTTTAACAAGCACAACATTATTATGCTTCTTGATAAGCTAGTTAACTCTTTCTTTATTCGTAATGATTTGTTAAGTAAATCGCTTTTAGAGATGCAGGTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAGGCAGGTCCCATTTTCAGTTCCTTGGAGACTAGTGATTTACTTCTTTTTCTGGACTTTTGGGGATCTTTCTGCTCCACATCAATTATAGAAGGTTGAAACATGAGGATATCCAAGACGATAAAAAAAGTTGCAAGAAAATAAAAAACAAGCAATTGGATTTCTTTAAATTCTTTTGAGGTTCTGGCTTAACTAGCTGTATCAGTATCCAAAAAAGGAAGAAGAGTAGGAAATCTTTTAGGAAGATGCATTTTCATTTCTTTTAATTACTGGAGACATGTTTCATGTGGAAGGGAGTGAGGTGAAGATGGCATGAGTTGTATGGTTGCGAGTTTATAGATTAACTGTTGAGATGCACTAGAAACTTATAGTGTTCCTTGATGTATCTAAAGGATATCAAGTGCTTTCTAAGGCGAAAATGTTCACATGCTCAAGCCTGAACAAGATTACTGTCTGATTTTCTTTTTTGTGCCAAATCCTACGTTCCTTTGTCATAAAGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCT</genome_strand>
        <mrna_strand>AAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG...........................................................................................................................................................................................................................................................................................................................................................GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGGGATGAAAAACTCTGGAACTGCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E281646" ref_strand="+" ref_description="SGN-E281646 [cLER-14-D3]">
      <seq>gaggtggaaacaatgccgttaaccgtatgattggtagtggtttacagggtgttgacttctatgctataaacacggatgctcaagcactggtacagtctgctgccgagaacccacttcaaattggagaacttctgactcgtgggcttggtactggtggcaatcctcttttaggggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaaaggttcagatatggttttcataacagcaggaatgggtggaggtacaggatctggtgcggctcctgttgtggctcaaatagcaaaagaagcaggttatttgactgttggtgttgttacatatccattcagctttgaaggacgtaaaagatctgtgcaggctctggaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactattcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="72225" stop="76295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72525" g_stop="72571" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74572" g_stop="74671" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="147" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75019" g_stop="75248" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="377" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75249" i_stop="75825" i_length="577">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75826" g_stop="75993" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="545" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E281646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72525" e_stop="72571"/>
          <exon e_start="74572" e_stop="74671"/>
          <exon e_start="75019" e_stop="75248"/>
          <exon e_start="75826" e_stop="75993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAGGTATCTATCCTCTTTTCCTTTTTGTCCCTTTCTCTTTTTCTCAATTTTGTTGCTTTATGGTAAAAACACGAGTTTTGTTGTAGTATCTTATCTACTGTTTCAAGTTTTGTTGCTTTCTCAGTGTCTTTATGTGCTATTTCCAGTAAAAAAGGATACACTTGGATTTTATTTAATTTTTGGTTATTTGTTCATCTTGTAGATACATATTCAAGAGAAATGTTTTCAAGTTAGCTAGCTATTGAAACTCCAAAAGCATTGAGGATAGAAATGAGAGTAAAAAGAAAAAGGAATTAGTTTCCATAGGAACTCAGTAAGAGCATTTTCGTTTGGTTCATATTTTAACTGTTATACATGTCATGAATTTTGATAGTTCTGTTTCTGAAGTTATTGATCAGAATATGATTGGTTGCCTGTTTCTGGCTTCCTTGATTGGTTTTGGGAACCACTCTGTCTTCAAGTGAGGCCTAAACTTCTTGTTGTATGCCTATTTGTCGATATTTGCATCAAAGTTTGTATCTCAATGCATAATGAAGAAATAATAGGAGAAAGGTATTTTATAGGCTTTCTTATCCAGGCTCGGCGAGAATAAGACGAGAGACTATGCTCTATGCTTTGTTCCTGCCACGTCTGGAGCTACAGTGTAACATGGGGTTCAGGCGAACCAAGTAGCTTTTGCGTAGACTTGTATTTGTACTAAAAACTCAAGAAACAAATGTATTGTTGTTGACGTGTGAAACAACACACAAAAACAACCGGATAGTTCAGTGGTGCGTGCGTGGGCTGCCGAAGCTTTTGTGTCCCCTAGCTATATGGGTTTGAAACTCGGTAGCTGCGCGTCATTTTTAGTTGAATTTTTGCTATATATGCTCTCTTTCTGAAAGGGAATATTCATTACTCTTTATTAGTTTCTCATAGATCCTTTTTTCCTTTCTATATACAATTTTTTTTTTCGGAAAAGAAAAAACCATTAAATTAATAATTGAAAAAACCAAAAAAAGTTAAATATATAGTTGTTGATGTGTGAAACAACATACGAAAATAATCGGATAGTTCAGTGGTGCGTGCGTGGGCTGTGAAGCTCTTGTGTCCCCTAGATATATGGGTTCGAAACTCGGTAGCCGCGTGTCATTTGTAGTTGATTTTTTTGCTATATATGCTCTCTTTCTAGAAGAGAATATTCATTACACTCTATTAGTTTGTCATAGTTCCTTTTTTCCTTTCTATGTGCAGTTTTTTTCCGAAAAAGAAAAAATCATTAAATTGATTATTGAAAAAACCAAATAAGTAAATTGTTGTACTGAAGTGCCATCGGTCATGTATAGTTTGCAAAACATGATAAGTATGATGATAGGTACTTATTCAAGTACAGTTTCAAAAAATTTATATAGTATTCAAGTAGTTTGTGATATTGAGTTTGTCCTTTTTTTTAATATAACAAATATCAGTGTTTGTTCATTAGTTTGGTGATTGTTAAACAATAGCTTGAGGTCATTGTCGTATCTTAAAATTCAGAACCCGTAAACCTAAAATCCTGGCTCCCCCTCTATTACTTCCTTTACTTTAGAACATAGGATCTCATAACAATCTTCTTCTTTCATTTGACTTGAGATTTCCTTTTATCTTAGCAACAAAGTGGTTACCCTTGGATTCTCTGTAACCATCTAATGATTGATTTGTGGGCATTTTGTTGACTGCCTAATTCTTTTAATGCGAATTTCTAATTCTTTATCTTCCAGAAAAGCATATGTTGGAATACAATGCCATTACAAGGTTGCATGTATACTTGTAGTGCTGGTTTACAAATTTGTGCCATGAAGAGAAGCTAGAAATATCCCTTACAAAATAAAGTAAAGGAAAGCTAGAAATTTCTTGTTGTCTATAGGATTTTTCGATCAGTTAGCTTTTTGTTATTATCTATTCTGAAAAAAAATGAAATGCCTTGTATGATCCCATCCCTTCATTTCATATGACAAATCTAAATGCTGCATGGCCAAAAATAGGGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTGGTTAGCACTCTTCTGTCTCTTTATAATGAAATTACTCTTTCATAATAGCTGTTTTTTCATTAATCAAATTCAACCTTGTTAAAAGAACTTCGGGAAAAACTAACATTAAGACAGTTATACTCTATCCTGTCTTTAGAAAATGACAGAGTATTACTTTATTATTATGTACATGGAATCATGTGGTGTCACATCTTGCTCTAGATGTAGATGCCTTTTGTTTTGCTATTGATTTTGAGGCTTATGTTCAATGGTTTAACAAGCACAACATTATTATGCTTCTTGATAAGCTAGTTAACTCTTTCTTTATTCGTAATGATTTGTTAAGTAAATCGCTTTTAGAGATGCAGGTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAGGCAGGTCCCATTTTCAGTTCCTTGGAGACTAGTGATTTACTTCTTTTTCTGGACTTTTGGGGATCTTTCTGCTCCACATCAATTATAGAAGGTTGAAACATGAGGATATCCAAGACGATAAAAAAAGTTGCAAGAAAATAAAAAACAAGCAATTGGATTTCTTTAAATTCTTTTGAGGTTCTGGCTTAACTAGCTGTATCAGTATCCAAAAAAGGAAGAAGAGTAGGAAATCTTTTAGGAAGATGCATTTTCATTTCTTTTAATTACTGGAGACATGTTTCATGTGGAAGGGAGTGAGGTGAAGATGGCATGAGTTGTATGGTTGCGAGTTTATAGATTAACTGTTGAGATGCACTAGAAACTTATAGTGTTCCTTGATGTATCTAAAGGATATCAAGTGCTTTCTAAGGCGAAAATGTTCACATGCTCAAGCCTGAACAAGATTACTGTCTGATTTTCTTTTTTGTGCCAAATCCTACGTTCCTTTGTCATAAAGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT</genome_strand>
        <mrna_strand>GAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG...........................................................................................................................................................................................................................................................................................................................................................GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E727594" ref_strand="+" ref_description="SGN-E727594 [LA15AF08]">
      <seq>ggaaacaatgccgttaaccgtatgattggtagtggtttacagggtgttgacttctatgctataaacacggatgctcaagcactggtacagtctgctgccgagaacccacttcaaattggagaacttctgactcgtgggcttggtactggtggcaatcctcttttaggggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaaaggttcagatatggttttcataacagcaggaatgggtggaggtacaggatctggtgcggctcctgttgtggctcaaatagcaaaagaagcaggttatttgactgttggtgttgttacatatccattcagctttgaaggacgtaaaagatctgtgcaggctctggaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactattcctgggcttgtgaatgtggattttgccgatgtaaaggcagtgatgaaagactctggaactgcaatgctcggagtgggtgtttcatcaagtaagaaccgagctgaagaagcagccgaacaagcaactctggcccctctaattgggtcgtcaattcaatctgcaactggggtagtatataacattacaggaggaaaagacataactttgcaagaagtgaatagggtgtcccaggttgttaccagtctagctgatccctctgctaacatcatatttggtgctgttgttgatgagcgttacaatggtgaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="72230" stop="77051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72530" g_stop="72571" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74572" g_stop="74671" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="142" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75019" g_stop="75248" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="372" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75249" i_stop="75825" i_length="577">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75826" g_stop="75993" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="540" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76333" g_stop="76566" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="774" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76672" g_stop="76751" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="854" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E727594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72530" e_stop="72571"/>
          <exon e_start="74572" e_stop="74671"/>
          <exon e_start="75019" e_stop="75248"/>
          <exon e_start="75826" e_stop="75993"/>
          <exon e_start="76333" e_stop="76566"/>
          <exon e_start="76672" e_stop="76751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAGGTATCTATCCTCTTTTCCTTTTTGTCCCTTTCTCTTTTTCTCAATTTTGTTGCTTTATGGTAAAAACACGAGTTTTGTTGTAGTATCTTATCTACTGTTTCAAGTTTTGTTGCTTTCTCAGTGTCTTTATGTGCTATTTCCAGTAAAAAAGGATACACTTGGATTTTATTTAATTTTTGGTTATTTGTTCATCTTGTAGATACATATTCAAGAGAAATGTTTTCAAGTTAGCTAGCTATTGAAACTCCAAAAGCATTGAGGATAGAAATGAGAGTAAAAAGAAAAAGGAATTAGTTTCCATAGGAACTCAGTAAGAGCATTTTCGTTTGGTTCATATTTTAACTGTTATACATGTCATGAATTTTGATAGTTCTGTTTCTGAAGTTATTGATCAGAATATGATTGGTTGCCTGTTTCTGGCTTCCTTGATTGGTTTTGGGAACCACTCTGTCTTCAAGTGAGGCCTAAACTTCTTGTTGTATGCCTATTTGTCGATATTTGCATCAAAGTTTGTATCTCAATGCATAATGAAGAAATAATAGGAGAAAGGTATTTTATAGGCTTTCTTATCCAGGCTCGGCGAGAATAAGACGAGAGACTATGCTCTATGCTTTGTTCCTGCCACGTCTGGAGCTACAGTGTAACATGGGGTTCAGGCGAACCAAGTAGCTTTTGCGTAGACTTGTATTTGTACTAAAAACTCAAGAAACAAATGTATTGTTGTTGACGTGTGAAACAACACACAAAAACAACCGGATAGTTCAGTGGTGCGTGCGTGGGCTGCCGAAGCTTTTGTGTCCCCTAGCTATATGGGTTTGAAACTCGGTAGCTGCGCGTCATTTTTAGTTGAATTTTTGCTATATATGCTCTCTTTCTGAAAGGGAATATTCATTACTCTTTATTAGTTTCTCATAGATCCTTTTTTCCTTTCTATATACAATTTTTTTTTTCGGAAAAGAAAAAACCATTAAATTAATAATTGAAAAAACCAAAAAAAGTTAAATATATAGTTGTTGATGTGTGAAACAACATACGAAAATAATCGGATAGTTCAGTGGTGCGTGCGTGGGCTGTGAAGCTCTTGTGTCCCCTAGATATATGGGTTCGAAACTCGGTAGCCGCGTGTCATTTGTAGTTGATTTTTTTGCTATATATGCTCTCTTTCTAGAAGAGAATATTCATTACACTCTATTAGTTTGTCATAGTTCCTTTTTTCCTTTCTATGTGCAGTTTTTTTCCGAAAAAGAAAAAATCATTAAATTGATTATTGAAAAAACCAAATAAGTAAATTGTTGTACTGAAGTGCCATCGGTCATGTATAGTTTGCAAAACATGATAAGTATGATGATAGGTACTTATTCAAGTACAGTTTCAAAAAATTTATATAGTATTCAAGTAGTTTGTGATATTGAGTTTGTCCTTTTTTTTAATATAACAAATATCAGTGTTTGTTCATTAGTTTGGTGATTGTTAAACAATAGCTTGAGGTCATTGTCGTATCTTAAAATTCAGAACCCGTAAACCTAAAATCCTGGCTCCCCCTCTATTACTTCCTTTACTTTAGAACATAGGATCTCATAACAATCTTCTTCTTTCATTTGACTTGAGATTTCCTTTTATCTTAGCAACAAAGTGGTTACCCTTGGATTCTCTGTAACCATCTAATGATTGATTTGTGGGCATTTTGTTGACTGCCTAATTCTTTTAATGCGAATTTCTAATTCTTTATCTTCCAGAAAAGCATATGTTGGAATACAATGCCATTACAAGGTTGCATGTATACTTGTAGTGCTGGTTTACAAATTTGTGCCATGAAGAGAAGCTAGAAATATCCCTTACAAAATAAAGTAAAGGAAAGCTAGAAATTTCTTGTTGTCTATAGGATTTTTCGATCAGTTAGCTTTTTGTTATTATCTATTCTGAAAAAAAATGAAATGCCTTGTATGATCCCATCCCTTCATTTCATATGACAAATCTAAATGCTGCATGGCCAAAAATAGGGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTGGTTAGCACTCTTCTGTCTCTTTATAATGAAATTACTCTTTCATAATAGCTGTTTTTTCATTAATCAAATTCAACCTTGTTAAAAGAACTTCGGGAAAAACTAACATTAAGACAGTTATACTCTATCCTGTCTTTAGAAAATGACAGAGTATTACTTTATTATTATGTACATGGAATCATGTGGTGTCACATCTTGCTCTAGATGTAGATGCCTTTTGTTTTGCTATTGATTTTGAGGCTTATGTTCAATGGTTTAACAAGCACAACATTATTATGCTTCTTGATAAGCTAGTTAACTCTTTCTTTATTCGTAATGATTTGTTAAGTAAATCGCTTTTAGAGATGCAGGTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAGGCAGGTCCCATTTTCAGTTCCTTGGAGACTAGTGATTTACTTCTTTTTCTGGACTTTTGGGGATCTTTCTGCTCCACATCAATTATAGAAGGTTGAAACATGAGGATATCCAAGACGATAAAAAAAGTTGCAAGAAAATAAAAAACAAGCAATTGGATTTCTTTAAATTCTTTTGAGGTTCTGGCTTAACTAGCTGTATCAGTATCCAAAAAAGGAAGAAGAGTAGGAAATCTTTTAGGAAGATGCATTTTCATTTCTTTTAATTACTGGAGACATGTTTCATGTGGAAGGGAGTGAGGTGAAGATGGCATGAGTTGTATGGTTGCGAGTTTATAGATTAACTGTTGAGATGCACTAGAAACTTATAGTGTTCCTTGATGTATCTAAAGGATATCAAGTGCTTTCTAAGGCGAAAATGTTCACATGCTCAAGCCTGAACAAGATTACTGTCTGATTTTCTTTTTTGTGCCAAATCCTACGTTCCTTTGTCATAAAGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAGGTAATGATGAACACTTTTTCTTTCTCTTTCTTCTGTTCTTCCTACCTCCAGAAGTATTAAAGAAACCTTTGGCTCTATATTAAACGTTGGCAATGTTTCTCACAGGTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACA</genome_strand>
        <mrna_strand>GGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG...........................................................................................................................................................................................................................................................................................................................................................GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG.........................................................................................................GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E312785" ref_strand="+" ref_description="SGN-E312785 [cTOA-8-H6]">
      <seq>ttttaggggaacaggcagcagaggagtcaaaggaagctattgcaaattctctgaaaggttcagatatggttttcataacagcaggaatgggtggaggtacaggatctggtgcggctcctgttgtggctcaaatagcaaaagaagcaggttatttgactgttggtgttgttacatatccattcagctttgaaggacgtaaaagatctgtgcaggctctggaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactattcctgggcttgtgaatgtggattttgccgatgtaaaggcagtgatgaaagactctggaactgcaatgctcggagtgggtgtttcatcaagtaagaaccgagctgaagaagcagccgaacaagcaactctggcccctctaattgggtcgtcaattcaatctgcaactggggtagtatataacattacaggaggaaaagacataactttgcaagaagtgaatagggtgtcccaggttgttaccagtctagctgatccctctgctaacatcatatttggtgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="74737" stop="77021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75037" g_stop="75248" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75249" i_stop="75825" i_length="577">
            <donor d_prob="0.711" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75826" g_stop="75993" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="380" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76333" g_stop="76566" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="614" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76672" g_stop="76721" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="664" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E312785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75037" e_stop="75248"/>
          <exon e_start="75826" e_stop="75993"/>
          <exon e_start="76333" e_stop="76566"/>
          <exon e_start="76672" e_stop="76721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAGGCAGGTCCCATTTTCAGTTCCTTGGAGACTAGTGATTTACTTCTTTTTCTGGACTTTTGGGGATCTTTCTGCTCCACATCAATTATAGAAGGTTGAAACATGAGGATATCCAAGACGATAAAAAAAGTTGCAAGAAAATAAAAAACAAGCAATTGGATTTCTTTAAATTCTTTTGAGGTTCTGGCTTAACTAGCTGTATCAGTATCCAAAAAAGGAAGAAGAGTAGGAAATCTTTTAGGAAGATGCATTTTCATTTCTTTTAATTACTGGAGACATGTTTCATGTGGAAGGGAGTGAGGTGAAGATGGCATGAGTTGTATGGTTGCGAGTTTATAGATTAACTGTTGAGATGCACTAGAAACTTATAGTGTTCCTTGATGTATCTAAAGGATATCAAGTGCTTTCTAAGGCGAAAATGTTCACATGCTCAAGCCTGAACAAGATTACTGTCTGATTTTCTTTTTTGTGCCAAATCCTACGTTCCTTTGTCATAAAGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAGGTAATGATGAACACTTTTTCTTTCTCTTTCTTCTGTTCTTCCTACCTCCAGAAGTATTAAAGAAACCTTTGGCTCTATATTAAACGTTGGCAATGTTTCTCACAGGTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGT</genome_strand>
        <mrna_strand>TTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG.........................................................................................................GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E697158" ref_strand="+" ref_description="SGN-E697158 [FA01AA05]">
      <seq>agattttttgttcatggcaatgctttatttctcctgtcatccatagtctttcatgtttctaatttgaacttattgaccgacaggctctggaagcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactgtgagttcctttgtcaatagccaacatctcttttctttaaatgatatgctgaaattcttctttgtataatataaatgtataatgtcatcgtactggtgatgttgcttcactaaattccttaaacacacttgcggacactcaccaacactgataagggcgatgatttttttctgtactaaatattttcataaagttgcatctgtttaatgttatatcaaaataagttctcccattaaaaaaggattgcaaatttacccatttgcaatgtaccatgttattagctntatgggagtatgcatataaatctagatataatatgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="75443" stop="76616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75743" g_stop="76316" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E697158" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75743" e_stop="76316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACT</genome_strand>
        <mrna_strand>AGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTNTATGGGAGTATGCATATAAATCTAGATATAATATGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E734144" ref_strand="+" ref_description="SGN-E734144 [LB11DF03]">
      <seq>catcaattgaaaaacttcagagaaatgttgacacacttatagtaattcccaatgatcgtctgctagatattgccgatgagcagacaccacttcaagatgcttttcttcttgcggatgatgtattacgtcaaggtgtccaaggaatatctgatataatcactattcctgggcttgtgaatgtggattttgccgatgtaaaggcagtgatgaaagactctggaactgcaatgctcggagtgggtgtttcatcaagtaagaaccgagctgaagaagcagccgaacaagcaactctggcccctctaattgggtcgtcaattcaatctgcaactggggtagtatataacattacaggaggaaaagacataactttgcaagaagtgaatagggtgtcccaggttgttaccagtctagctgatccctctgctaacatcatatttggtgctgttgttgatgagcgttacaatggtgaaatacacgtgacaataattgcaactggtttcacccagtcgtttcagaagacacttctatctgatccacggggagcaaagctaatcgagaagggggcaggaatcaaagaaaacatggcatcacctgttaccctgagatcatcaaacacaccttcaacaacctcacggacacctactcgaaggctgttcttttagctccttcatattgttttattttacagcttcattactctcctttttagtttcttcctttgtagttaacatgttttgctgaagggaaactgattggtgtttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="75534" stop="77340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75833" g_stop="75993" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76333" g_stop="76566" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="395" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76672" g_stop="77054" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="778" r_length="383" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E734144" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75833" e_stop="75993"/>
          <exon e_start="76333" e_stop="76566"/>
          <exon e_start="76672" e_stop="77054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAGGTAATGATGAACACTTTTTCTTTCTCTTTCTTCTGTTCTTCCTACCTCCAGAAGTATTAAAGAAACCTTTGGCTCTATATTAAACGTTGGCAATGTTTCTCACAGGTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGCATGTGGCTGTAGAGA</genome_strand>
        <mrna_strand>CATCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG.........................................................................................................GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E349050" ref_strand="-" ref_description="SGN-E349050 [cTOF-29-P18]">
      <seq>ccaaggaatatctgatataatcactattcctgggcttgtgaatgtggattttgccgatgtaaaggcagtgatgaaagactctggaactgcaatgctcggagtgggtgtttcatcaagtaagaaccgagctgaagaagcagccgaacaagcaactctggcccctctaattgggtcgtcaattcaatctgcaactggggtagtatataacattacaggaggaaaagacataactttgcaagaagtgaatagggtgtcccaggttgttaccagtctagctgatccctctgctaacatcatatttggtgctgttgttgatgagcgttacaatggtgaaatacacgtgacaataattgcaactggtttcacccagtcgtttcagaagacacttctatctgatccacggggagcaaagctaatcgagaagggggcaggaatcaaagaaaacatggcatcacctgttaccctgagatcatcaaacacaccttcaacaacctcacggacacctactcgaaggctgttcttttagctccttcatattgttttattttacagcttcattactctcctttttagtttcttcctttgtagttaacatgttttgctgaagggaaactgattggtgtttgcatgtggctgtagagatagtgattattctttatcagatgcatattcagctatgctctcttgtgacatgcacgtttttacgcatgtaaaaatattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="75669" stop="77435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75969" g_stop="75993" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76333" g_stop="76566" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="259" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76672" g_stop="77135" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="723" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E349050" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349050" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75969" e_stop="75993"/>
          <exon e_start="76333" e_stop="76566"/>
          <exon e_start="76672" e_stop="77135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACTGGTCCTTTTTCGGTAGATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAGGTAATGATGAACACTTTTTCTTTCTCTTTCTTCTGTTCTTCCTACCTCCAGAAGTATTAAAGAAACCTTTGGCTCTATATTAAACGTTGGCAATGTTTCTCACAGGTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGCATGTGGCTGTAGAGATAGTGATTATTCTTTATCAGATGCATATTCAGCTATGCTCTCTTGTGACATGCACGTTTTTACGCATGTAAAAATATTGAT</genome_strand>
        <mrna_strand>CCAAGGAATATCTGATATAATCACT...................................................................................................................................................................................................................................................................................................................................................ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG.........................................................................................................GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGCATGTGGCTGTAGAGATAGTGATTATTCTTTATCAGATGCATATTCAGCTATGCTCTCTTGTGACATGCACGTTTTTACGCATGTAAAAATATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E293401" ref_strand="-" ref_description="SGN-E293401 [cLET-18-P1]">
      <seq>gggtcgtcaattcaatctgcaactggggtagtatataacattacaggaggaaaagacatagctttgcaagaagtgaatagggtgtcccaggttgttaccagtctagctgatccctctgctaacatcatatttggtgctgttgttgatgagcgttacaatggtgaaatacacgtgacaataattgcaactggtttcacccagtcgtttcagaagacacttctatctgatccacggggagcaaagctaatcgagaagggggcaggaatcaaagaaaacatggcatcacctgttaccctgagatcatcaaacacaccttcaacaacctcacggacacctactcgaaggctgttcttttagctccttcatattgttttattttacagcttcattactctcctttttagtttcttcctttgtagttaacatgttttgctgaagggaaactgattggtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="76177" stop="77337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76477" g_stop="76566" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76672" g_stop="77037" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="456" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E293401" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76477" e_stop="76566"/>
          <exon e_start="76672" e_stop="77037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAGGTAATGATGAACACTTTTTCTTTCTCTTTCTTCTGTTCTTCCTACCTCCAGAAGTATTAAAGAAACCTTTGGCTCTATATTAAACGTTGGCAATGTTTCTCACAGGTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTT</genome_strand>
        <mrna_strand>GGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAGCTTTGCAAGAAGTGAATAGGGTGTCCCAG.........................................................................................................GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E261282" ref_strand="+" ref_description="SGN-E261282 [cLEG-68-N20]">
      <seq>tttggtgctgttgttgatgagcgttacaatggtgaaatacacgtgacaataattgcaactggtttcacccagtcgtttcagaagacacttctatctgatccacggggagcaaagctaatcgagaagggggcaggaatcaaagaaaacatggcatcacctgttaccctgagatcatccaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="76411" stop="77192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76711" g_stop="76889" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E261282" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76711" e_stop="76889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAA</genome_strand>
        <mrna_strand>TTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E297877" ref_strand="+" ref_description="SGN-E297877 [cLET-38-A22]">
      <seq>agaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaaagaacaagtactttggagtgtgtatgagaagtgtgtgtattagatatcgaacatctccttctgtttcctcctgtgtaatcgatgttttcgtgattgtactcacatcagtgtgtcgagacaaccttgaagtctttttctccacttgatatgtttctatatgtaaaaaagacgtcgaaagcattttccaaagtctatcaatatttgagtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="85010" stop="82196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84710" g_stop="84625" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="187" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="232" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82845" g_stop="82486" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="592" r_length="360" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E297877" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84710" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAATATTTGAGTGAAACTAGTGTTAA</genome_strand>
        <mrna_strand>AGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAATATTTGAGTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E220608" ref_strand="-" ref_description="SGN-E220608 [cLEL-12-G18]">
      <seq>attgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaaagaacaagtactttggagtgtgtatgagaagtgtgtgtattagatatcgaacatctccttctgtttcctcctgtgtaatcgatgttttcgtgattgtactcacatcagtgtgtcgagacaaccttgaagtctttttctccacttgatatgtttctatatgtaaaaaagacgtcgaaagcattttccaaagtctatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="84280" stop="82207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84102" g_stop="84100" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="48" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82845" g_stop="82493" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="401" r_length="353" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E220608" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220608" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84102" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAATATTTGAGTGAAACTA</genome_strand>
        <mrna_strand>ATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E746398" ref_strand="+" ref_description="SGN-E746398 [GI|47105564]">
      <seq>ggcgtgtagacaataacgaagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaaagaacaagtactttggagtgtgtatgagaagtgtgtgtattagatatcgaacatctccttctgtttcctcctgtgtaatcgatgttttcgtgattgtactcacatcagtgtgtcgagacaaccttgaagtctttttctccacttgatatgtttctatatgtaaaaaagacgtcgaaagcattttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87363" stop="82218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87064" g_stop="86907" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="379" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="585" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="686" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="731" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82507" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="1070" r_length="339" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E746398" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1070</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87064" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGTGTAGACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAATA</genome_strand>
        <mrna_strand>GGCGTGTAGACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E708165" ref_strand="+" ref_description="SGN-E708165 [FA35AB03]">
      <seq>ccattaacgaagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaaagaacaagtactttggagtgtgtatgagaagtgtgtgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87354" stop="82366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87055" g_stop="86907" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="370" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="576" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="677" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="722" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82666" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="902" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E708165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87055" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATT</genome_strand>
        <mrna_strand>CCATTAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E728604" ref_strand="+" ref_description="SGN-E728604 [LA18BD09]">
      <seq>ggcacttggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttggtgtggcaatatatatgttgattaagtatctgtaaatgcaaaagaacaagtactttggagtgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87336" stop="82381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87042" g_stop="86907" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="357" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="563" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="664" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="709" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82681" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="874" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E728604" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87042" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATG</genome_strand>
        <mrna_strand>GGCACTTGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGGTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E710892" ref_strand="+" ref_description="SGN-E710892 [FA57BB02]">
      <seq>ccttagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaaatgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87345" stop="82405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87049" g_stop="86907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="671" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="716" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82705" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="857" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E710892" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87049" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAG</genome_strand>
        <mrna_strand>CCTTAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAAATGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E709163" ref_strand="+" ref_description="SGN-E709163 [FA42DE07]">
      <seq>cggtagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87347" stop="82407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87049" g_stop="86907" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="364" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="671" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="716" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82707" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="855" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E709163" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87049" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAA</genome_strand>
        <mrna_strand>CGGTAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E728164" ref_strand="+" ref_description="SGN-E728164 [LA16DF06]">
      <seq>ggacaatggagctggccaatctttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87342" stop="82409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87042" g_stop="86907" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="357" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="563" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="664" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="709" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82709" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="846" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E728164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87042" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCA</genome_strand>
        <mrna_strand>GGACAATGGAGCTGGCCAATCTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E719213" ref_strand="+" ref_description="SGN-E719213 [FC07AE01]">
      <seq>ggagctggacaaactttgccggtaaagttccctgaacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcaaaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatgttgattaagtatctgtaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87335" stop="82410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87035" g_stop="86907" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="350" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="556" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="657" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="702" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82710" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="838" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E719213" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87035" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGC</genome_strand>
        <mrna_strand>GGAGCTGGACAAACTTTGCCGGTAAAGTTCCCTGAACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E708827" ref_strand="+" ref_description="SGN-E708827 [FA36DE06]">
      <seq>aaaagtggtttcaataatgaccaaatgcgcgtgtagacaataacgaagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgctttggaatgtcatttctgntgtggcaatatatatgttgattaagtatctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87391" stop="82413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87091" g_stop="86907" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="406" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="612" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="713" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="758" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82713" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="891" r_length="133" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E708827" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87091" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTTTCAATAATGACCAAATGCGCGTGTAGACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAA</genome_strand>
        <mrna_strand>AAAAGTGGTTTCAATAATGACCAAATGCGCGTGTAGACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTTGGAATGTCATTTCTGNTGTGGCAATATATATGTTGATTAAGTATCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E703586" ref_strand="+" ref_description="SGN-E703586 [FA21DF08]">
      <seq>aggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgcttggaattgtcattcttgttgtggcaatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87343" stop="82432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87043" g_stop="86907" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="358" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="564" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="665" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="710" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82732" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="824" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E703586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87043" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATG</genome_strand>
        <mrna_strand>AGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E699767" ref_strand="+" ref_description="SGN-E699767 [FA11AF04]">
      <seq>agaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagacttcagcgggtgcagagaaagcttggaattttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctagcggtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87345" stop="82465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87045" g_stop="86907" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="360" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="566" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="667" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="712" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82765" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="793" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E699767" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87045" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTT</genome_strand>
        <mrna_strand>AGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E698157" ref_strand="+" ref_description="SGN-E698157 [FA05BG08]">
      <seq>caggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttacagactcaagaacttcagcgggtgcagagaaagcttggaaatttgaacaaacgcacaaagggtggttgctcttgcatgtgtatgcttctaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87343" stop="82471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87044" g_stop="86907" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="359" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="565" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="666" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83936" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="712" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82845" g_stop="82771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="787" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E698157" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87044" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83936"/>
          <exon e_start="82845" e_stop="82771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTACAGACTCAAG-ACTTCAGGTGAGAACTTGTTTAGGATAACTCTTGTTCTGGTGAGCATTGGACTTAATATATTCTTTTAGGAGTCTCAAGTCTATAGACATCTTCCAGCACCGCAGAATCTGTGTGGATGGCTCTGCAATTTGGAATGACTAATCATGTCTTGTTTAATTTGAGAAGAAGGTATAAAGCTATCATGTGTTTAGGGTTCAGGATGTAATAGGTTAAAATACTTAGAAGTTTAAGCATTGCACCCTGAGGGCTTCTTTGTTATTGGGATGGTATCTAGAGATTGGTTGTGTGCGCTTAAAAAATGGTGAGTTGCTAGAACATTAAGGATAAGTGAAGGGAAAGTTTTTGTGTCCTTCTTATGACACAGGTAATTGACATTCATGTAGTCACATTTTTCTTTTGATATTGAAGGGAAAGCACTTTCGTCCTGATGATGATACATGAAATTGACATTCATGTGGTCACATTTCTCGCTTGTGTCATTTGGATAACCTTTGTTTGTCTTTTGATGGGGGAGGGGGTCAGATGAACTGTCAGGATATTGATTATTTTTGTCAATTCCATAATCCTGATGTGTTTGAATTACCAAAAGAGGTTAAGGAGGAAGAGGAACATATGTAAATTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGGGTGGGGTGGTGGTGGTAGTGAGGAGAGACATTGATATAAAGGCAAAGTAACTGGTTTTACCAAACAAAGTATTCTACCTGCAAAGGGGTGGCCTAGCTGTTGAAATAACTGGAGTTACAACCTTGGCACAATGTTTGAATCCTAGAGAGGCGAAACTAGGTGAAATCTTTTTATCTACCTAAGCTTTGTTAAGTAGAGTGACCCGGTGGATAAGTCGATGTGCAGCAAGTTGGCTGGGAGGACACCATTATCCAAAGAAGAAGGAAAAATAAAAAAGAACCTAAACTTAGTGTCTGCACCAACGCACACTTTAATACAAACACTTGCTCTGTCAATAAGACGGTTCTTATCAGTCTCATTTTCTTCAGCTTTTGTATTCTTGGTGAGAATTATTTGTTGTCACTTGATTCATTTTCTTTCCTCTTTTTCCCCAATAATTCAACAGCGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCG</genome_strand>
        <mrna_strand>CAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGAACTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTGCAGAGAAAGCTTGGAAATTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E718612" ref_strand="+" ref_description="SGN-E718612 [FC05AG08]">
      <seq>agcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatgagggccttgagagtctggaggagacagtgatgagcactaaacatatagcactggcagttaatgaagaacttggcttgcaaacaagacttattgatgacctggacgaacatgttgatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87306" stop="83652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87006" g_stop="86907" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="321" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="527" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84200" g_stop="84100" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="628" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83980" g_stop="83952" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="657" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E718612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87006" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
          <exon e_start="84200" e_stop="84100"/>
          <exon e_start="83980" e_stop="83952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAGGTGAGTTTTATTCTGCTCCTCCATTCCCAGTTTGTATGACACTCTTTTCTCTTATTTGGCTGCTCAAATTTAAACTTTGGTGACAATTATATTGGAAATTATTTTCACAGCTTTCAAGAATTCAAATTTATGTAAACAATTACAACTATGCTTCAGTTGAAACAAGTTGGACTCGGCTATATGAATCCTCATTGAAGCTCTTCAAATTTATGTAGCTAGTCAAATTTAAATGATATGATTCCCTGTCTAACTAATTGCTTTGCCCTCTACTAATATTATATACAAGTCATAATAACATCTTAAACTCCACGCACACAGTGTTACATTAATTTAGAGGCAAGAAGTACTAAGTTTGAAATGTTATTTAGTTTTTCGGTTTTTATTCTGTTATTTTTCTTATTTGTTTGCGTTACTCTCAAATCAGAGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATTGTATGATCTCTACTTTCTGCTTTACATTAAACTATACTTTACTCTCAATTTTCTTAAGGGAGTAAAACCTTTCTGCTACTAAAGTGGATACTGATTTCATTGTCCTACCAAAAATGCAGGATGACCTGGACGAACATGTTGATGTTAC</genome_strand>
        <mrna_strand>AGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT.......................................................................................................................GATGACCTGGACGAACATGTTGATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E271683" ref_strand="+" ref_description="SGN-E271683 [cLEM-23-F15]">
      <seq>gacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaagagcaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87341" stop="84318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87041" g_stop="86907" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="356" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="562" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E271683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87041" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG</genome_strand>
        <mrna_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E304540" ref_strand="+" ref_description="SGN-E304540 [cLEX-11-K8]">
      <seq>acaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaagactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataatggcgttgtcggtcttcaacggcaaattatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87340" stop="84325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87040" g_stop="86907" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="355" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84625" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="561" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E304540" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87040" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG</genome_strand>
        <mrna_strand>ACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAAGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E266679" ref_strand="+" ref_description="SGN-E266679 [cLEI-5-J19]">
      <seq>gacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgacaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87341" stop="84359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87041" g_stop="86907" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="356" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84659" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="528" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E266679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87041" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAAT</genome_strand>
        <mrna_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E300308" ref_strand="+" ref_description="SGN-E300308 [cLEW-17-I2]">
      <seq>gacaatggagctggacaaactttgccggtaaagttagcggcgcgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacaggtcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87341" stop="84365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87041" g_stop="86907" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="356" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84665" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="522" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E300308" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87041" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGAC</genome_strand>
        <mrna_strand>GACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCGCGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E326009" ref_strand="+" ref_description="SGN-E326009 [cTOD-1-C9]">
      <seq>gaagaggacaatggagctggacaaactttgccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagcttcgcgaatagggacagtttgcttggaccagaaataaagcctgtggatgctatgagcagagcaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87347" stop="84372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87047" g_stop="86907" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="362" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84672" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="521" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E326009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87047" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGG</genome_strand>
        <mrna_strand>GAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E300764" ref_strand="+" ref_description="SGN-E300764 [cLEW-8-C13]">
      <seq>aaactttgtcggtaaagatagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactatcttaggaactagacttgataacttacagtctatcctgtcaaagcttgctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgctagcaaatttaaaatcgaaagtatctcaaatggcttccacattgaacatgtcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87325" stop="84440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87025" g_stop="86907" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="340" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84740" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="431" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E300764" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87025" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGC</genome_strand>
        <mrna_strand>AAACTTTGTCGGTAAAGATAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATCTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTGCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTAGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E326011" ref_strand="+" ref_description="SGN-E326011 [cTOD-1-C19]">
      <seq>aactttgccggtaaagatagcggcacctgttctataaaatcattccgacccgccatttctctctccaaaattctctcacaattccgccatcgccaccgtgaattcagatcacaaagaggtaatggctacttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgacatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcagtcatccgctataaggaggaacattactctgttaggaactagacttgctaacttccaggctatcctgtcaaagcttcctggaaagcagcctttgtcagataaagagatgcaccgccgcatggatatgcttgcaaattgacaatcccaagtctctcagatggcttccacattgaacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87324" stop="84444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87024" g_stop="86907" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="339" r_length="221" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84744" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E326011" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87024" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTC</genome_strand>
        <mrna_strand>AACTTTGCCGGTAAAGATAGCGGCACCTGTTCTATAAAATCATTCCGACCCGCCATTTCTCTCTCCAAAATTCTCTCACAATTCCGCCATCGCCACCGTGAATTCAGATCACAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTACTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGACATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCAGTCATCCGCTATAAGGAGGAACATTACTCTGTTAGGAACTAGACTTGCTAACTTCCAGGCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGATAAAGAGATGCACCGCCGCATGGATATGCTTGCAAATTGACAATCCCAAGTCTCTCAGATGGCTTCCACATTGAACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E324577" ref_strand="+" ref_description="SGN-E324577 [cTOC-9-N9]">
      <seq>taacgaagaggacaatggagctggacaaactgtggccggtaaagttagcggcacgtcttctttaaaattattccgactcgccgtttctctctccaaaattctctcacaattccaccatcgccaccgtgaattcagatcagaaagaggtaatggcttcttctggagattcatggatccgggagtataacgaaggactgaaactcgcggatgatatcactaacatgatatctgaaaggagttcattgcctgcttcgggcccagaagcacagcgtcattcatccgctataaggaggaagattactattttaggaactagacttgataacttacagtctatcctgtcaaagcttcctggaaagcagcctttgtcagagaaagagatgaaccgtcgcaaggatatgcttgcaaatttaaaatcgaaagtatctcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="-" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="87351" stop="84465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87051" g_stop="86907" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85835" g_stop="85615" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="367" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84830" g_stop="84765" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="433" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="-" ref_id="SGN-E324577" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87051" e_stop="86907"/>
          <exon e_start="85835" e_stop="85615"/>
          <exon e_start="84830" e_stop="84765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGAAGAGGACAATGGAGCTGGACAAACT-TTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAGGTAATTGTAACTCTTCGTCACTTGACCTATGTTCGATCATTTCAATAATTTTGCTTTTTTTTAAAAAATAAATTATTTTTTTTTGAATTTTTTCAACTGATCAACTCGAATGAAATTCAATCATCCGTAATTCGGCAGAGATTGGTGTTTTTGACTTTAATTATGTAGTGTATTGATTTTTGGTCTTTTATACTCTTGCAAATGAAGAATTAGGGTTCTGGATTGGGTGACCTTTGGGATTTTTTGCTGTTTCGTGTAATTGTAGCCGCCTTTTACTTTGTCTGGCTGTTATTTAAGTTAATTTTTGTAGCTCAGTTTCATACTAGCCGTTTCATATAATTGTAGCCACATTTTTTCGCAATTGAGTTAATTTTGTTGTTGAGTTTTACATTTCGTATTTGTATTGGATTAGCTAGGAGAAAGCGAAGTAATTATGGCATTTCATCAGAATAAGTTGGTTTCTGTTTTAGTATTTCATGTTGTAATAATTGATTTACATACAAAAATAATATGACAAAAAATTAGGTATGTTTTTTCGTATGTATCGCAATATATCTTCATCCTATAGGCTATACTAATATCTAGTTGTGTAGGAAGGAACAAATGCATTACAAACTTCAAGATCACATTTCTGGTTCTTATTTTTTCTCCTTTTTATTCTTTATGTTGCTTTTAGTTCTTTTTCTTTTGAGGACGGTTGGTGGAGGAGGTGCAGTTCTACTTAATTGGGAAACCAAGGTTAATTTGATCTCAGATCAAACTGAAATTGTGATGTTCCTCTAGTTTTTCATATATTTGGACTAAGTTGTTGGATGTGGATGGTGTTGCACATTATATGAGAAAGTGAAGTTCTGTTCCAGATTTGATTTAGTATCTCCGTGCCCTTTGTTTTTATGTGGTTTTCTTTTAATCCATATTTTTGTTTTGGTGGACCATCCATGAAGCACTTCTAATGATGGAAAAGAAGCATAAAGGGTTACAATTCTCATTACATTTTTTTTTTTTAAAAAATAATCTTGAGTTGCAGTCAAAGTGCAGAAATTAATGTACTTCTTTCTAATGTCTCTTCAGGTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTTGTGAGTGTTCTTTATCTGATTCTCTCATTGTGTGGCTGCAATGGTAATGTAGGGGGGGGGGGACTTTAGTTGAATGTGTTTCTAATTAAATTTTGTTTAGAAATGACATTTCAATTTGATTTTCATTTTCCAACTCTTTTATGCCTAATGGAGCACATATTTTCAATCAAAATTTCCTAGGGTCTTATATTTTATTACTAAAAGCTAAGTAAGGAGGTGTTTTGGAAAGACTAAAAATGCTTTTAAGCACTTCCTTTTAGGCTAAAATAGTAGAAAAATAAGCTTAAAGATAAATGTTGGCTATGACCAACTTATTGCTTTTAGCTTTTAAGCTACTTAAAAAAACCAATCCAAACACCCCCTAAATCAAGCATGAACTTAGTACTACTGAATTTTCAGCCTTGTGGTTGGGCCATACCTTAGTGCCAACTAATAAACAGTAAAAAGTATAATTTTCCTTTTTTCCTTGATAATCTTATGAATTTGTAGAACACATTTAGTTGAAATATAGAGAGTTCCATGGAGATGAATTGCTGAAATAAAACTTTAGGTTGGTTTATGCAGTAAGTTTTATGTGCATTGTCTATATGGTAATTCAGAATGTTGAGACTCTCTTCTGCAATCTGACTTAATAGTGTAAACAGTTGTCTCTTTCAAAAGTCCCTATAAAGTTTGTTTGCATACTGCACCGTCCATATATAGATTCGAAAAAACTGTGTATTCTGTTACTACTGCTATGTTGCCTTCTGTATGTTTTTTTGAGCACTCTCCCTCCTGTATGTAGGTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAAT</genome_strand>
        <mrna_strand>TAACGAAGAGGACAATGGAGCTGGACAAACTGTGGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E555360" ref_strand="+" ref_description="SGN-E555360 [cTSC-2-D15]">
      <seq>agagaaaaaatgaagtaaaactagagaaagcggcgagtcagcaacaccgtgcgtgaatcgcgaaaacccggcactcgacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtagtagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggagatattgcacggatatatttgactatttaagcttatccgctcttattgagaataagatattctctgttcatggtggtctctctcctacaatatctacattagaccagattcgaactattgatcggaagcaagaagttcctcacgagggtgccatgtgtgacctactatggtcagatccagaggacatcgttgatggaggggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88700" stop="94620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89000" g_stop="89337" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="491" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="554" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93785" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="640" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94070" g_stop="94145" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="716" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94146" i_stop="94224" i_length="79">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94225" g_stop="94320" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="812" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E555360" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89000" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93785"/>
          <exon e_start="94070" e_stop="94145"/>
          <exon e_start="94225" e_stop="94320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAATGAAGTAAAACTAGAGAAAGCGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGGTTTGCTACTTTATTCTACTGACGTCTGAAATTGGGGAACCAACCTGATATGTCTGATGCATTTATATTAGATCCACTGCTTTCTAGTTTGACATAGAACCTCTCCCCTCTGTCATGGTTCCCTTGTCCACTTGCATGACATACTTGAGAAATTTTGGACTTTGGTGTTCTGCTGATCCTCTTTTCTCGCTCCAACAGTGTACATGTATGACTGTGTGAACAAGTTATGGTACATTTACATTTGGTGTACTGAACTTCTATTACTTGTCTTGATCATAATGCAGCTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAGGTTTGGAACTAGTCTCTGACTCTGTTGCTTGAACTTTTACTTGTGATGGAATGCGTTGACATCATCATGTCTATCTCAGATTCGAACTATTGATCGGAAGCAAGAAGTTCCTCACGAGGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAGGACATCGTTGATGGATGGGGA</genome_strand>
        <mrna_strand>AGAGAAAAAATGAAGTAAAACTAGAGAAAGCGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAG............................................................................................................................................................................................................................................................................................CTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAG...............................................................................ATTCGAACTATTGATCGGAAGCAAGAAGTTCCTCACGAGGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAGGACATCGTTGATGGAGGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E317934" ref_strand="+" ref_description="SGN-E317934 [cTOA-30-A10]">
      <seq>aaaaaatgaagtaaaactagagaaagcggcgagtcagcaacaccgtgcgtgaatcgcgaaaacccggcactcgacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtagtagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacgggagtatggttcagtaaatgtttggagatatgcacggatatatttgactatttaagcttatccgctcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88704" stop="94385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89004" g_stop="89337" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="487" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="550" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93785" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="635" r_length="85" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94070" g_stop="94085" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="651" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E317934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89004" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93785"/>
          <exon e_start="94070" e_stop="94085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGAAGTAAAACTAGAGAAAGCGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGGTTTGCTACTTTATTCTACTGACGTCTGAAATTGGGGAACCAACCTGATATGTCTGATGCATTTATATTAGATCCACTGCTTTCTAGTTTGACATAGAACCTCTCCCCTCTGTCATGGTTCCCTTGTCCACTTGCATGACATACTTGAGAAATTTTGGACTTTGGTGTTCTGCTGATCCTCTTTTCTCGCTCCAACAGTGTACATGTATGACTGTGTGAACAAGTTATGGTACATTTACATTTGGTGTACTGAACTTCTATTACTTGTCTTGATCATAATGCAGCTTATCCGCTCTTATT</genome_strand>
        <mrna_strand>AAAAAATGAAGTAAAACTAGAGAAAGCGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGGAGTATGGTTCAGTAAATGTTTGGAGATA-TGCACGGATATATTTGACTATTTAAG............................................................................................................................................................................................................................................................................................CTTATCCGCTCTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E746878" ref_strand="+" ref_description="SGN-E746878 [GI|47104404]">
      <seq>cggcgagtcagcaacaccgtgaatcgcgaaaacccggcactcgacggcccagcagaggctgctactactcatatgctcttcaatcggagaagacagttgtagtagattttgttacggagctcgccggtgaattgagaaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatatgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatgggcaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggagatattgcacggatatatttgactatttaagcttatccgctcttattgagaataagatattctctgttcatggtggtctctctcctacaatatctacattagaccagattcgaactattgatcggaagcaagaagttcctcacgagggtgccatgtgtgacctactatggtcagatccagaggacatcgttgatggatggggattgagtcctcgtggtgcaggtttccttttcggtggcagtgttgtcacttcatttaaccatacaaataacatagactatatatgccgtgcacatcagttagtaatggaaggatataaatggatgttcaataatcagatagttacagtctggtctgctccaaactactgttacagatgtggtaatgttgcagcaattcttgagctagacgagaatcttactaagcagttccgtgtgtttgaagctgctcctcaggaatcaagaggagcacctgctaaaaagcctccaccagattacttcctgtaagacgagacaaatgattcaatttttgccatcaatatatccatactgtcgacaatatggctctgtagaggagatgcaggagttgctctcacatgattcattttggtagaaaggcttcttggtttaaccgaaagaatggtaccatttttagggtttctaagatctgaatgcgtgtcgcccattttgaaatcccatacatgttatttttccttgtaatgttggtgtgtgtaatagaaaatggtgggacattgaagtgatagttgcaattatgaggcaacttcactctcctgtaaaggagttgtgtacgacttaagtcgaggacccttttttcagcatcttgttacatctggactttggtgaatcagtaaatgtttcttgatgtcatgttgcataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88730" stop="96289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89030" g_stop="89337" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="457" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="520" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93785" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="606" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94070" g_stop="94145" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="682" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94146" i_stop="94224" i_length="79">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94225" g_stop="94493" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="951" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94494" i_stop="94624" i_length="131">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94625" g_stop="94703" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="1030" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="94704" i_stop="95543" i_length="840">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95544" g_stop="95995" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1031" r_stop="1483" r_length="453" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E746878" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1486</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89030" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93785"/>
          <exon e_start="94070" e_stop="94145"/>
          <exon e_start="94225" e_stop="94493"/>
          <exon e_start="94625" e_stop="94703"/>
          <exon e_start="95544" e_stop="95995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGGTTTGCTACTTTATTCTACTGACGTCTGAAATTGGGGAACCAACCTGATATGTCTGATGCATTTATATTAGATCCACTGCTTTCTAGTTTGACATAGAACCTCTCCCCTCTGTCATGGTTCCCTTGTCCACTTGCATGACATACTTGAGAAATTTTGGACTTTGGTGTTCTGCTGATCCTCTTTTCTCGCTCCAACAGTGTACATGTATGACTGTGTGAACAAGTTATGGTACATTTACATTTGGTGTACTGAACTTCTATTACTTGTCTTGATCATAATGCAGCTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAGGTTTGGAACTAGTCTCTGACTCTGTTGCTTGAACTTTTACTTGTGATGGAATGCGTTGACATCATCATGTCTATCTCAGATTCGAACTATTGATCGGAAGCAAGAAGTTCCTCACGAGGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAGGACATCGTTGATGGATGGGGATTGAGTCCTCGTGGTGCAGGTTTCCTTTTTGGTGGCAGTGTTGTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAGGTCAGTTAAGTCACAGGGTTAGTTTGTAATTTGTTCTTCCTCTACTGTCATTTTCCTCTTTTCTTTTGTCAGAGGTATCCTTGTTTCATTTTGGAATAAAATAATTTTGTATTCATTTGAATACATTGCAGATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAGGTTTGTCATGTTTGGTGAATGAGGAATATGTTATTAATTTATCAACATGCTATTTTCACTCGCAATGGTTAAACAGAAATTCCACATCCCATTGTCCTATATATTTCTTTCATTCATGAGGCCTTTATTAACATAACAAAATGCAGTGCAAGGAGAAGTGGCAAGGTACAGGGCATAGAAATACTGGAACTGTCCAAATAGATTCTGCCAATTATAAAAATAGAACTATTGGAAGAGAACAAAAAACATCATGACACACTGTACCAATGTCCATCCAGGCTGTCCAGCAAATGTGCACCCCCCCTCTTCCATGATAGGACTTTTTAACCATCTAAGAATACCTTCTGAATATCACGTCGCTTAAAAATGTTTACATTGAATCCGCTCTGGCTATTAATAGAAGTTCAGATTCTAGTTTCCATTATCAATAGTATTTTTAGTACTCTCCTACTATCGAAGTCTTCGGTTTTATATTGTTGCTTCCTGTGCTTCAGTTATCGTATTAATCGTTTGTTGCTACACCACTGTATTTCCTTTTCATACTGATTTTGATATGCTTTATTTGTACCGAGGGTCCATCGAGAAGGGCCTATGCATTTGGAGTTATGAATAGAGAATGAAGTTATGGTCTATCTCTTTCTTTCTTATCAAAAGAAGAATGAAGTTATGATCTGGTGATAGATATGTGGAGAAAAATATGTTTTTTACCGTTAACTTATCAACAAATACATTGATCTTTACCAGTATGGGCTGAGAAGGCACACAGTTACTTGTATAGGATGCCTATGTGAGACTCTTCCGCGCAATCTTACATTTGTATAATTTTTTGGTGAAATGCAGGAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAG-AAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACA</genome_strand>
        <mrna_strand>CGGCGAGTCAGCAACA-C---CGTGAATCGCGAAAACCCGGCACTCGACGGCCCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTTGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATTGAGAAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATATGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGGCAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAG............................................................................................................................................................................................................................................................................................CTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAG...............................................................................ATTCGAACTATTGATCGGAAGCAAGAAGTTCCTCACGAGGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAGGACATCGTTGATGGATGGGGATTGAGTCCTCGTGGTGCAGGTTTCCTTTTCGGTGGCAGTGTTGTCACTTCATTTAACCATACAAATAACATAGACTATATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAG...................................................................................................................................ATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTCCGTGTGTTTGAAGCTGCTCCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACGAGACAAATGATTCAATTTTTGCCATCAATATATCCATACTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAGGCTTCTTGGTTTAACCGAAAGAATGGTACCATTTTTAGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGTTGGTGTGTGTAATAGAAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTGTACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGATGTCATGTTGCATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E303552" ref_strand="+" ref_description="SGN-E303552 [cLEX-2-J24]">
      <seq>tcagcaacaccgtgcgtgaatcgcgaaaacccggcactcgacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtagtagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggagatattgcacggatatatttgactatttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88737" stop="94085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89037" g_stop="89337" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="454" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="517" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93786" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="604" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E303552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89037" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGG</genome_strand>
        <mrna_strand>TCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E322498" ref_strand="+" ref_description="SGN-E322498 [cTOB-26-M4]">
      <seq>gcaacaccgtgcgtgaatcgcgaaaacccggcactcgacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtagtagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88740" stop="94020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89040" g_stop="89337" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="451" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="514" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93720" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="535" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E322498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89040" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAG</genome_strand>
        <mrna_strand>GCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E231423" ref_strand="+" ref_description="SGN-E231423 [cLED-4-C19]">
      <seq>aaaacccggcactcgacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtagtagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88762" stop="94056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89062" g_stop="89337" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="429" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="492" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93756" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="549" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E231423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89062" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGA</genome_strand>
        <mrna_strand>AAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E246523" ref_strand="+" ref_description="SGN-E246523 [cLEF-45-C12]">
      <seq>gacggcgcagcagaggctgctactactcatatgctcttcaatcggagaagacagtagtaggagattttgttacggagctcgccggtgaatcgaggaagtgaaagcaacaccgagttcgaagatgtcagacctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggagatattgcacggatatatttgactatttaagcttatccgctcttattgagaataagatattctctgttcatggtggtctctctcctacaatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88776" stop="94434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89076" g_stop="89337" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="415" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="478" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93785" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="564" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94070" g_stop="94134" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="629" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E246523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89076" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93785"/>
          <exon e_start="94070" e_stop="94134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGGTTTGCTACTTTATTCTACTGACGTCTGAAATTGGGGAACCAACCTGATATGTCTGATGCATTTATATTAGATCCACTGCTTTCTAGTTTGACATAGAACCTCTCCCCTCTGTCATGGTTCCCTTGTCCACTTGCATGACATACTTGAGAAATTTTGGACTTTGGTGTTCTGCTGATCCTCTTTTCTCGCTCCAACAGTGTACATGTATGACTGTGTGAACAAGTTATGGTACATTTACATTTGGTGTACTGAACTTCTATTACTTGTCTTGATCATAATGCAGCTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTA</genome_strand>
        <mrna_strand>GACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGGAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAG............................................................................................................................................................................................................................................................................................CTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E210959" ref_strand="+" ref_description="SGN-E210959 [cLEC-69-L1]">
      <seq>ctagataggcaaattgagcagctcaagagatgcgagccgttaaaggaatctgaagttaaggctctttgtatgaaagctatggaaatccttgttgaagaaagcaatgtgcagagagtcgacgcgcctgtcactatatgtggtgatatccatggacaattttatgacatgaaagagctatttaaagtgggaggtgattgcccaaagacaaattacttgtttctcggagattttgttgatagaggattttactccgttgagacatttcttcttctactagctcttaaggtgagatatcccgatcggatcactcttatcagaggtaaccatgagagccgccagatcacacaggtatatggattctatgatgagtgcctacggaagtatggttcagtaaatgtttggagatattgcacggatatatttgactatttaagcttatccgctcttattgagaataagatattctctgttcatggtggtctctctcctacaatatctacattagaccagattcgaactattgatcggaagcaagaagttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="88906" stop="94557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89206" g_stop="89337" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92458" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="285" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93566" g_stop="93628" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="348" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93700" g_stop="93785" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="434" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94070" g_stop="94145" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="510" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94146" i_stop="94224" i_length="79">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94225" g_stop="94257" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="543" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E210959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89206" e_stop="89337"/>
          <exon e_start="92306" e_stop="92458"/>
          <exon e_start="93566" e_stop="93628"/>
          <exon e_start="93700" e_stop="93785"/>
          <exon e_start="94070" e_stop="94145"/>
          <exon e_start="94225" e_stop="94257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACTGTAAGTCGAATTAAAAACCCTACGTTGGAGTTGATATAGGAAGGTGAAGATTGATTTTGACTTGGTTCGATATACTGAGCTGAGGTTTGAGTTTACTTGTCAAATGAGAGAATTGATGTATTTATTTTATTATTTTTTTTGCTGGAATCAGTCTAGGTTAACTCTAATACAATTAAAACCTTACGTGGGAGTGATATAGGAGGGAGGAACTGGGATTTTGACTTGCGTCAATACTGTAGGGTAAATACTGAGCAGAAGTGTGAGTGTAGTTTGCCAAATGGGGAATTGATGAATTTATTCTCTCAATTGTTTTGATGGATTGGTCTAGGTTAAGTGTTGGTGAGGTAGAGTTTTTATCTGGCAGTGTTCCAGCTTTTTAGAACTTAATTCCGCCATGAAAGTGATTTCTTGTCAAACGACTCGATAGTTAGAGTCGCCACTTGTTTATACTGGATTTTAGCAATACTGCAAACAATTAAGGAAAGTAGTTTGGACATTTTGATGTTTTTTTTTTTTGATAAAGTAAGTGGTATTAATAATAGCATCAAGAAGATGTTAGAATTACAAGATATGACATTTGGAGGCTCTTTTTTGATTTGGTACGTTCGAGGAATTGGAATTTTGTTATGGATTTTTCCTTTGTTGTTCTGCTGGTTTTGTTTGAGGGTCCCTCTTGGGGATGGACATGTTATTTATATTTGTCGAAACTCAAAAGTTCCGAGAATTAATGTGGATAAATTTGAAGAACATTTCTAGATTAATTTTATATGTCTAGGTTAATTGTCTTTAATATTTTTAATTATTGCGTCATAACTAGAGGAATCACGTTTATTAGGAAGCTACCTTAAAGTTCCAGCGGCACAACTCTATACAAGCAGCTCCATTATATGTTGTTCAGCACTTGATTCAATAATAAAATGACCTACCATCTACTATTATCTCTATAGTAGAGATGATAACTTCTTCCTACCTTCTTTTTGTATGAAAGTAACTTCTTCCTACCTCACGTGAGTCACACTAGCAGTTGGCGGAAGTTACTCTCTGTGTAGTGTTAATATTCCTGTTTATTTGTCGTTACTGTTTTGTCAGCATCATACCTTCTTTCAGGCTACTGTTTCATTGACGTCACATCGTATTTGTATCTATCATTGGTGTTTCCTCAGTATACCTAATTATGAAATCAGGAGTTTGTGTCATTAAGATGAAGATATCAAAGGATACCTCAGTCTTAAATAGTCTGTTTTTGGTGCACTCAGATGTGTAAATTGGAAGTTCAATTTCATTGGTGCATCTGTAGTTCACGTTTCATGCATCATCAATCGTCTAGGATTGGTGACATTAATCAGTTAAACCTGTCTGTTGAGGGCTGATATTATTGTTCCACGTCTGCTGAACTTGTCGAGCCAGTAGTCCATCTCGCCAAGTCAATGCTACACATGACATTGCTGAAGCAGTGCCATGTTAGTATTGCCTAGTTGGCTCTGTGGATTGTAATGCTATGGTCCAATTGATAGTATTTTGTTTTGTCACCGATTTCATTTAACTGGCTGCACGATATTTCACATTTAGCCACGACTCTTGTATTTATGGTGGCATCACGATTTAGTTAATAAGTTACAGCATAATGCGAATTCAATTTTACTTTCACCCTTACTTTGGTGACAATATTCAAATGAATGTTGTGGCAACAATAACTTTCTTGTTGTATTTGACTTGGCTTTCTAGTCTTGATTTGCAAACAACGAGTTGCTTCATCATCTTGAATTTGAAGATGAAAGTTAAGAGAATTAGTTGGAATGTGTCCTGGGTTATTTTATATGTTTAGGTTAGTTGTGTAAAACATCATTTTGATAAAGGAAGTAATTTTTTTAAAACATTTAAATGAAGTAATTTTTATTAATAGGGCCAAGAGGGTGTTAGCTTTACATAAATATATTACAGGTAATTGTGTATCATGTTAATAGAATATTCTTATTCTTTTTGTTAGCAATCTTGAAGATTATGAAGGTTTCGTTGTTTTATGTAGTCTAAACACTCTTTCTTTGCGATCAAGTATAGCTTATACTTACTAATACAGTCATTTTATTAATGATTGTACTTAGATGATCTTGAAATTGAGGAAGTATCACTCTTTCATGTGACCTTATCAACACTTCTTTTTTTTCCCCCGAGACTAAGTATAACCTAAACTTGTCACGATCTCTTAAATATTTTGGTGCAACAGTTAAATCCATATGAGCTCCTCTTTTCACTGAAATTGCTTCTTTATATATTATGCAGTACTGGTTAAGGTTGGAACAATGTTATCATAGTTTTCCTTCTGGGAGTTGGAGGATATTCATGAGAAGCTTCTATGTGATACTGTTCCATTTTTTGTTAAATAGCTGTTTCTTCTGGAGGAAATTCAATCAGCATTTATCTTATTCTGCCCAGTGAATGATATATCTGCCAACAGTTTGTGATGTAGAAGTATTAGTCATTTCTCTTGTCATGACACCAACTGGCTTGGGACTCCACAACTAGCTCCGAGTTGAGGCTTAATTGTTATTGTTATTGCTGCTTACTGGGGTCCATCCTGGGTTCTGGCTGAGTATATTACACTGCACATGTTGGATAGAGGGCTCACAAATTTGGTTAGGATCCAGAATGTCTAGAAAGAAGAAGCAAAATATGAGTGTAGAGAATTTGCTACGGATGAAGGACAATCACCAATGGATTGCATTGGATTGTGGAGTCTCTTGGGATATATATTGACATGTATAATATTGACTTGTGAAATTGTAAAAGCTACAAGAGGGAACAGATTATCGTAAATTCTTATTCATTTGATTGACTATATGGCCTTATCATTTGCAGATGATATTCTTAGGTGCTATGTTTGCATTGTAGTTATTTCATGCAAGTTCCACTAATGTACGTTCAGGTATTGCTTGAAATCTGTTTCAGCTATTGTTTTCTTGATGTGCAGATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAGGTATTTTATGTTTCTAACTGTCACTTCCTGTGATATCAGGTACATATACATATTCTTGCAAGTTTTATCTTATTGGTTAGACTTAGAATTATTCTTGAACCCACGTGCTATAGCATTTACTGTTGAAAGTTGGTTATATGAATATTTCTAGTCCCTGCAGTTTTTTGTTTCCTTTGTAAAACAGATGTTTTGAAACAAATAACATTTCAGGGATATACCGTTGCATACGCTGTGCAATCTGAGATAAGCATTCCAGCCTGTGTTTGCTTCATTTTTTGTTCTTAATAGTGTAATGGAATAGAAGTGGAATTTATTTTGATTGGAAACAAAATAGATGAATTGGATTCATTAAACTTTCATATTGTATGGGATAACTACAGTCTACATGTGCTTGCTTTTGTTGTACATCTTTGCCGCATTGAGTTCCTTTGGATTCTTGAGTACAAGGCGAATAAGCTTATAATGATATCACTGTTGAATTTCTTTATCAGTAATAAAAAAATATCTCAGTTGCTTTTTAAAGGAAAAAATTGACATTGCAATTATTTAGATCATTATCAACTTTAAGGACTCTCCCACCCTCATCCCACCCCAATCCGCCCGACATGAGGATGTGATCTGACAGTTTCTTAAATGTTAGTGTCCATATGATGCTCTAACTTTTGAGATCCAAAATAAATTGTTGCATGAGACTGAATTTTTTTTGTTTTATGAAATAGCACACTTGATAAAACACATTATGACAGTCTGCTTCTTGAAGCTCTAATAACGTCGGCTTCAGTACCATCTCTGTCACATGTTATTCATTTACCTATCTTGTCTTTTCTGTGCATGCTTCCCCCACTTTTTCAATCTTTGCCTTCTGTTGCTGATTTCCACTTGACTCTGCTTCATCCTAAATTGATTTCACTTCGGAAAATAACTGGCTCGTCCATTTCTTGTTAAAAAGATCTTTGCTTCAATGTACTAAGTTTTTTTGTGACTTCCTTTGTTGAGTTGCGTATAGTAGATTACTAGATTTACATCCACATTCATGTCTGTTACTCAACATGTCGCCTTTTCCCTTTTAATTGTGGAAAAAGAAAATAATTGGTAATGCATAATCAGGTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAGGTTGGTCCTTCATTTTCTCTACCAATAGCTTATAACTTATTATATGATCTTATTCTCTTCAAAATTTCCAGGTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGGTTTGCTACTTTATTCTACTGACGTCTGAAATTGGGGAACCAACCTGATATGTCTGATGCATTTATATTAGATCCACTGCTTTCTAGTTTGACATAGAACCTCTCCCCTCTGTCATGGTTCCCTTGTCCACTTGCATGACATACTTGAGAAATTTTGGACTTTGGTGTTCTGCTGATCCTCTTTTCTCGCTCCAACAGTGTACATGTATGACTGTGTGAACAAGTTATGGTACATTTACATTTGGTGTACTGAACTTCTATTACTTGTCTTGATCATAATGCAGCTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAGGTTTGGAACTAGTCTCTGACTCTGTTGCTTGAACTTTTACTTGTGATGGAATGCGTTGACATCATCATGTCTATCTCAGATTCGAACTATTGATCGGAAGCAAGAAGTTCCT</genome_strand>
        <mrna_strand>CTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG.......................................................................GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAG............................................................................................................................................................................................................................................................................................CTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAG...............................................................................ATTCGAACTATTGATCGGAAGCAAGAAGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E688176" ref_strand="+" ref_description="SGN-E688176 [T3_tus_85_P20]">
      <seq>tgtcacttcatttaaccatacaaataacatagactacatatgccgtgcacatcagttagtaatggaaggatataaatggatgttcaataatcagatagttacagtctggtctgctccaaactactgttacagatgtggtaatgttgcagcaattcttgagctagacgagaatcttactaagcagtttcgtgtgtttgaagctgctcctcaggaatcaagaggagcacctgctaaaaagcctccaccagattacttcctgtaagacaacacaaatgattcaatttttgccatcaatatatccatattgtcgacaatatggctctgtagaggagatgcaggagttgctctcacatgattcattttggtagaaaagcttcttggtttaaccgaaagaatggtaccattgttggggtttctaagatctgaatgcgtgtcgcccattttgaaatcccatacatgttatttttccttgtaatggtggtgtgtgtaatagaaatggtgggacattgaagtgatagttgcaattatgaggcaacttcactctcctgtaaaggagttgtatacgacttaagtcgaggacccttttttcagcatcttgttacatctggactttggtgaatcagtaaatgtttcttggtgtcatgttgcataataacatgcacattttgtatggtcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="94062" stop="96310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94362" g_stop="94493" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94494" i_stop="94624" i_length="131">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94625" g_stop="94703" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="211" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94704" i_stop="95543" i_length="840">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95544" g_stop="96007" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="675" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="695"/>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E688176" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94362" e_stop="94493"/>
          <exon e_start="94625" e_stop="94703"/>
          <exon e_start="95544" e_stop="96007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAGGTCAGTTAAGTCACAGGGTTAGTTTGTAATTTGTTCTTCCTCTACTGTCATTTTCCTCTTTTCTTTTGTCAGAGGTATCCTTGTTTCATTTTGGAATAAAATAATTTTGTATTCATTTGAATACATTGCAGATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAGGTTTGTCATGTTTGGTGAATGAGGAATATGTTATTAATTTATCAACATGCTATTTTCACTCGCAATGGTTAAACAGAAATTCCACATCCCATTGTCCTATATATTTCTTTCATTCATGAGGCCTTTATTAACATAACAAAATGCAGTGCAAGGAGAAGTGGCAAGGTACAGGGCATAGAAATACTGGAACTGTCCAAATAGATTCTGCCAATTATAAAAATAGAACTATTGGAAGAGAACAAAAAACATCATGACACACTGTACCAATGTCCATCCAGGCTGTCCAGCAAATGTGCACCCCCCCTCTTCCATGATAGGACTTTTTAACCATCTAAGAATACCTTCTGAATATCACGTCGCTTAAAAATGTTTACATTGAATCCGCTCTGGCTATTAATAGAAGTTCAGATTCTAGTTTCCATTATCAATAGTATTTTTAGTACTCTCCTACTATCGAAGTCTTCGGTTTTATATTGTTGCTTCCTGTGCTTCAGTTATCGTATTAATCGTTTGTTGCTACACCACTGTATTTCCTTTTCATACTGATTTTGATATGCTTTATTTGTACCGAGGGTCCATCGAGAAGGGCCTATGCATTTGGAGTTATGAATAGAGAATGAAGTTATGGTCTATCTCTTTCTTTCTTATCAAAAGAAGAATGAAGTTATGATCTGGTGATAGATATGTGGAGAAAAATATGTTTTTTACCGTTAACTTATCAACAAATACATTGATCTTTACCAGTATGGGCTGAGAAGGCACACAGTTACTTGTATAGGATGCCTATGTGAGACTCTTCCGCGCAATCTTACATTTGTATAATTTTTTGGTGAAATGCAGGAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACATTTTGTATGGTC</genome_strand>
        <mrna_strand>TGTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAG...................................................................................................................................ATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACATTTTGTATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E337196" ref_strand="+" ref_description="SGN-E337196 [cTOE-7-E7]">
      <seq>gtcacttcatttaaccatacaaataacatagactacatatgccgtgcacatcagttagtaatggaaggatataaatggatgttcaataatcagatagttacagtctggtctgctccaaactactgttacagatgtggtaatgttgcagcaattcttgagctagacgagaatcttactaagcagtttcgtgtgtttgaagctgctcctcaagaatcaagaggagcacctgctaaaaagcctccaccagattacttcctgtaagacaacacaaatgattcaatttttgccatcaatatatccatattgtcgacaatatggctctgtagaggagatgcaggagttgctctcacatgattcattttggtagaaaagcttcttggtttaaccgaaagaatggtaccattgttggggtttctaagatctgaatgcgtgtcgcccattttgaaatcccatacatgttatttttccttgtaatggtggtgtgtgtaatagaaatggtgggacattgaagtgatagttgcaattatgaggcaacttcactctcctgtaaaggagttgtatacgacttaagtcgaggacccttttttcagcatcttgttacatctggactttggtgaatcagtaaatgtttcttggtgtcatgttgcataataacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="94063" stop="96293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="94493" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94494" i_stop="94624" i_length="131">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94625" g_stop="94703" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="210" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94704" i_stop="95543" i_length="840">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95544" g_stop="95993" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="660" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E337196" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="94493"/>
          <exon e_start="94625" e_stop="94703"/>
          <exon e_start="95544" e_stop="95993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAGGTCAGTTAAGTCACAGGGTTAGTTTGTAATTTGTTCTTCCTCTACTGTCATTTTCCTCTTTTCTTTTGTCAGAGGTATCCTTGTTTCATTTTGGAATAAAATAATTTTGTATTCATTTGAATACATTGCAGATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAGGTTTGTCATGTTTGGTGAATGAGGAATATGTTATTAATTTATCAACATGCTATTTTCACTCGCAATGGTTAAACAGAAATTCCACATCCCATTGTCCTATATATTTCTTTCATTCATGAGGCCTTTATTAACATAACAAAATGCAGTGCAAGGAGAAGTGGCAAGGTACAGGGCATAGAAATACTGGAACTGTCCAAATAGATTCTGCCAATTATAAAAATAGAACTATTGGAAGAGAACAAAAAACATCATGACACACTGTACCAATGTCCATCCAGGCTGTCCAGCAAATGTGCACCCCCCCTCTTCCATGATAGGACTTTTTAACCATCTAAGAATACCTTCTGAATATCACGTCGCTTAAAAATGTTTACATTGAATCCGCTCTGGCTATTAATAGAAGTTCAGATTCTAGTTTCCATTATCAATAGTATTTTTAGTACTCTCCTACTATCGAAGTCTTCGGTTTTATATTGTTGCTTCCTGTGCTTCAGTTATCGTATTAATCGTTTGTTGCTACACCACTGTATTTCCTTTTCATACTGATTTTGATATGCTTTATTTGTACCGAGGGTCCATCGAGAAGGGCCTATGCATTTGGAGTTATGAATAGAGAATGAAGTTATGGTCTATCTCTTTCTTTCTTATCAAAAGAAGAATGAAGTTATGATCTGGTGATAGATATGTGGAGAAAAATATGTTTTTTACCGTTAACTTATCAACAAATACATTGATCTTTACCAGTATGGGCTGAGAAGGCACACAGTTACTTGTATAGGATGCCTATGTGAGACTCTTCCGCGCAATCTTACATTTGTATAATTTTTTGGTGAAATGCAGGAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCA</genome_strand>
        <mrna_strand>GTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAG...................................................................................................................................ATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E354265" ref_strand="+" ref_description="SGN-E354265 [cTOS-16-J15]">
      <seq>aggagcacctgctaaaaagcctccaccagattacttcctgtaagacaacacaaatgattcaatttttgccatcaatatatccatattgtcgacaatatggctctgtagaggagatgcaggagttgctctcacatgattcattttggtagaaaagcttcttggtttaaccgaaagaatggtaccattgttggggtttctaagatctgaatgcgtgtcgcccattttgaaatcccatacatgttatttttccttgtaatggtggtgtgtgtaatagaaatggtgggacattgaagtgatagttgcaattatgaggcaacttcactctcctgtaaaggagttgtatacgacttaagtcgaggacccttttttcagcatcttgttacatctggactttggtgaatcagtaaatgtttcttggtgtcatgttgcataataacatgcacattttgtatggtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="95252" stop="96310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95552" g_stop="96009" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96010" i_stop="96090" i_length="81">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.435" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96091" g_stop="96103" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="471" r_length="13" r_score="0.692"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E354265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95552" e_stop="96009"/>
          <exon e_start="96091" e_stop="96103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACATTTTGTATGGTCATATTGTTGTGTTTGTATTAATTATTAAGAGACCATGAAATATCTAATCTGTCCCAAAATGAGTTATGATATTCTATTTTTAGAAAATGAAACATA</genome_strand>
        <mrna_strand>AGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACATTTTGTATGGTCAA.................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E308541" ref_strand="+" ref_description="SGN-E308541 [cLEY-21-J18]">
      <seq>taaaacaacacatatgattcaagttttgccatcaatatatccgtgttgtcgacaatatggctctgtagaggatatgcaggagttgctctcacatgattcattttggtcgaaaagcttcttggtttaaccgaaagaatggtaccattgttggggtttctaagatctgaatgcgtgacgcccatattgaaatcccatacatgttatttttccttgtaatgggggtgtgggtaatagaaatggtgggacattgaattgatatctgcaattatgaggcaacttcactctcttgtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="95292" stop="96186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95592" g_stop="95886" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E308541" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95592" e_stop="95886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGG</genome_strand>
        <mrna_strand>TAAAACAACACATATGATTCAAGTTTTGCCATCAATATATCCGTGTTGTCGACAATATGGCTCTGTAGAGGATATGCAGGAGTTGCTCTCACATGATTCATTTTGGTCGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGACGCCCATATTGAAATCCCATACATGTTATTTTTCCTTGTAATGGGGGTGTGGGTAATAGAAATGGTGGGACATTGAATTGATATCTGCAATTATGAGGCAACTTCACTCTCTTGTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E299771" ref_strand="+" ref_description="SGN-E299771 [cLEW-1-A3]">
      <seq>ttcaaatcaaagctcactctctaatcttcaacttcatccatctcaatttcttcaataaaatccaaaaaattctcaatctactgagtctgcccctcaattaattccatggcaggctcagtttccttcttcgtttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgtgtgatttcttcgactgtgaaagctggtgatacgggtattgttattagtgtttctggtgcttatgcgaatatgaccatgaattgggaatattcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96476" stop="97534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96776" g_stop="97234" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E299771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96776" e_stop="97234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATCAAAGCTCACTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATAT</genome_strand>
        <mrna_strand>TTCAAATCAAAGCTCACTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E203612" ref_strand="+" ref_description="SGN-E203612 [cLEC-15-H11]">
      <seq>cactctctaatcttcaacttcatccatctcaatttcttcaataaaatccaaaaaattctcaatctactgagtctgcccctcaattaattccatggcaggctcagtttccttcttcgtttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96490" stop="97391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96790" g_stop="97091" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E203612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96790" e_stop="97091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTG</genome_strand>
        <mrna_strand>CACTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E256797" ref_strand="+" ref_description="SGN-E256797 [cLEG-40-E22]">
      <seq>ctctctaatcttcaacttcatccatctcaattgcttcaataaaagggcaaaaaagtctcaatctactgagtctgcccctcgattaattccatagcgggctcactgtcctgctgagttttgctatctgtactcctttcttcaagtgtctgcgtcgaatcctatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatatccctattattggtacaactcatatggttctttcgaatatcaatattgataatatacgtgtgatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96492" stop="97448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96792" g_stop="97148" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E256797" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96792" e_stop="97148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAA-TCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTT</genome_strand>
        <mrna_strand>CTCTCTAATCTTCAACTTCATCCATCTCAATTGCTTCAATAAAAGGGCAAAAAAGTCTCAATCTACTGAGTCTGCCCCTCGATTAATTCCATAGCGGGCTCACTGTCCTGCTGAGTTTTGCTATCTGTACTCCTTTCTTCAAGTGTCTGCGTCGAATCCTATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATCCCTATTATTGGTACAACTCATATGGTTCTTTCGAATATCAATATTGATAATATACGTGTGATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E206077" ref_strand="+" ref_description="SGN-E206077 [cLEC-20-P10]">
      <seq>aatcttcaacttcatccatctcaatttcttcaataaaatccaaaaaattctgaatctactgagtctgcccctcaattaattccatggcaggctcagtttccttcttcgcttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaagaatttctagtacaaatggcggagacttcattagttgcacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgcgtgatttcttcgactgtgaaagctggtgatacgggtattgctattagtgtttctggtgcttatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96498" stop="97504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96798" g_stop="97204" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E206077" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96798" e_stop="97204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCG</genome_strand>
        <mrna_strand>AATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTGAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGCTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAAGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTGCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGCGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGCTATTAGTGTTTCTGGTGCTTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E246880" ref_strand="+" ref_description="SGN-E246880 [cLEF-41-D15]">
      <seq>tcaacttcatccatctcaatttcttcaataaaatccaaaaaattctcaatctactgagtctgcccctcaattaattccatggcaggcttcagtttccttcttcgtttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagaacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgtgtgatttcttcgactgtgaaagctggtgatacgggtattgttattagtgtttctggtgcttatgcgaatatgaccatgaattgggaatattcatattcgaattggtggcttcctgttcctattgcggataatggaaaagcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96503" stop="97583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96803" g_stop="97283" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E246880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96803" e_stop="97283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGC-TCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAG-ACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATATTCGAATTGGTGGCTTCCTGTTCCTATTGCGGATAATGGAAAAGCTTCTA</genome_strand>
        <mrna_strand>TCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGAACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATATTCGAATTGGTGGCTTCCTGTTCCTATTGCGGATAATGGAAAAGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E243090" ref_strand="+" ref_description="SGN-E243090 [cLEF-15-G7]">
      <seq>caacttcatccatctcaatttcttcaataaaatccaaaaaattctcaatctactgagtctgcccctcaattaattccatggcatgctcagtttccttcttcgtttttctatctttactcctttttacaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaagaatttctagtacaaatggcggagacttcattatttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacacgccatatggttctttcgaatatcagtatgtgataatattcgggtgattaaatccactgtgaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96504" stop="97444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96804" g_stop="97162" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E243090" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96804" e_stop="97162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTAT-TGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCT</genome_strand>
        <mrna_strand>CAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCATGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTACAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAAGAATTTCTAGTACAAATGGCGGAGACTTCATTATTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACACGCCATATGGTTCTTTCGAATATCAGTATGTGATAATATTCGGGTGATTAAATCCACTGTGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E307741" ref_strand="+" ref_description="SGN-E307741 [cLEY-16-B17]">
      <seq>caaactgtattcactcaatccatgggcaaactgtatccatctcaatttcttcaataaaatccaaaaaattctcaatctactgagtctgcccctcaattaattccatggcaggctcagtttccttcttcggttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgtgtgatttcttcgactgtgaaagctggcgatacgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96505" stop="97475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96811" g_stop="97175" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="399" r_length="365" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E307741" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96811" e_stop="97175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTA</genome_strand>
        <mrna_strand>ATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGGTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGCGATACGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E698786" ref_strand="+" ref_description="SGN-E698786 [FA07CD03]">
      <seq>ccaaaaaattctcaatctactgagtccgcccctcaattaattccatggcaggctcagtttccttcttcgtttttctatctttactccttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgtgtgatttcttcgactgtgaaagctggtgatacgggtattgttattactgtttctggcgcttatgcgaatatgacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96537" stop="97514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96837" g_stop="97214" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E698786" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96837" e_stop="97214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCA</genome_strand>
        <mrna_strand>CCAAAAAATTCTCAATCTACTGAGTCCGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTACTGTTTCTGGCGCTTATGCGAATATGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-kTN9J9/sgn_ests_tomato" ref_id="SGN-E272352" ref_strand="+" ref_description="SGN-E272352 [cLEM-19-C17]">
      <seq>taattccatggcaggctcagtttccttcttcgtttttctatctttacggcttttttcaagtatctgtgttgaatccgatggagaagggtacatatcattggatatatcaaataaaggtcttgattttatgaaggaatttctagtacaaatggcggagacttcattagttccacttgacctacctaaaattgagaaatcaaagcatattcctattattggtacagttcatatggttctttcgaatatcagtattgataatattcgtgtgatttcttcgactgtgaaagctggtgatacgggtattgttattagtgtttctggtgcttatgcgaatatgaccatgaattgggaatattcatattcgaattggtggcttcctgttcctattgcggataatggaaaagcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0061J13-wxFkJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0061J13.1" temp_strand="+" temp_description="C07HBa0061J13.1  AC212623.1 htgs_phase:1 submitted_to_sgn_as:gi|158262119|gb|AC212623.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0061J13, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces">
        <position start="96574" stop="97583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96874" g_stop="97283" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0061J13.1" gen_strand="+" ref_id="SGN-E272352" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0061J13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96874" e_stop="97283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATATTCGAATTGGTGGCTTCCTGTTCCTATTGCGGATAATGGAAAAGCTTCTA</genome_strand>
        <mrna_strand>TAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACGGCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATATTCGAATTGGTGGCTTCCTGTTCCTATTGCGGATAATGGAAAAGCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>162</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="642" PGL_stop="1631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="642" e_stop="787"/>
            <exon e_start="1015" e_stop="1253"/>
            <exon e_start="1339" e_stop="1510"/>
            <exon e_start="1598" e_stop="1631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.487" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="642" e_stop="787" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="788" i_stop="1014" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1015" e_stop="1253" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.848" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1254" i_stop="1338" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1339" e_stop="1510" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.487">
            <gDNA_intron_boundary i_start="1511" i_stop="1597" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.941">
            <gDNA_exon_boundary e_start="1598" e_stop="1631" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="642" stop="787"/>
              <exon start="1015" stop="1253"/>
              <exon start="1339" stop="1510"/>
              <exon start="1598" stop="1631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAGTTACAATTGGAGACTTACCGCCTTTGATGGCGAAACTAAAGGCTTTCAATGAGATGTTTAATGAGGAAGAGATCCGGAATATCTTGGCTGAATCAGGTTCAGATGTGAATGATGAGATTGATTTCGAAAGCTTCCTTAAA : ACATACTTGAATCTACAAGCTCGAGCTGCCCCAAAAGTAGGCAGTTCTAAAAGTTCGTCGTCCTTCCTGAAGGCTTCCACAACTACACTCCTTCACACGATCAGTGAATCAGAGAAATCATCTTATGTTGCTCATATAAACAGCTATTTAAGAGATGATCCATTCTTAAAGCAATTTCTTCCAATAGATCCAGCTTCAAATGCTTTGTTTGATTTGGCAAAGGATGGAGTTCTTTTATG : TAAGCTGATCAATGTAGCTGTACCTGGCACAATAGACGAGCGGGCTATTAACATGAAACGAGTAATTAATCCATGGGAGAGAAATGAGAATCACACCCTTTGCCTCAATTCTGCAAAGGCTATTGGCTGCACTGTTGTCAATATTGGCACTCAGGACCTGNTTGAAGGACGA : CCTCACCTAATACTTGGGCTTTTTTCTCAAATCA</gDNA_template>
            <first_frame> V  K  L  Q  L  E  T  Y  R  L  *  W  R  N  *  R  L  S  M  R  C  L  M  R  K  R  S  G  I  S  W  L  N  Q  V  Q  M  *  M  M  R  L  I  S  K  A  S  L  K :   H  T  *  I  Y  K  L  E  L  P  Q  K  *  A  V  L  K  V  R  R  P  S  *  R  L  P  Q  L  H  S  F  T  R  S  V  N  Q  R  N  H  L  M  L  L  I  *  T  A  I  *  E  M  I  H  S  *  S  N  F  F  Q  *  I  Q  L  Q  M  L  C  L  I  W  Q  R  M  E  F  F  Y   : V  S  *  S  M  *  L  Y  L  A  Q  *  T  S  G  L  L  T  *  N  E  *  L  I  H  G  R  E  M  R  I  T  P  F  A  S  I  L  Q  R  L  L  A  A  L  L  S  I  L  A  L  R  T  C  L  K  D  D :   L  T  *  Y  L  G  F  F  L  K  S </first_frame>
            <second_frame>  *  S  Y  N  W  R  L  T  A  F  D  G  E  T  K  G  F  Q  *  D  V  *  *  G  R  D  P  E  Y  L  G  *  I  R  F  R  C  E  *  *  D  *  F  R  K  L  P  *   : N  I  L  E  S  T  S  S  S  C  P  K  S  R  Q  F  *  K  F  V  V  L  P  E  G  F  H  N  Y  T  P  S  H  D  Q  *  I  R  E  I  I  L  C  C  S  Y  K  Q  L  F  K  R  *  S  I  L  K  A  I  S  S  N  R  S  S  F  K  C  F  V  *  F  G  K  G  W  S  S  F  M  :  *  A  D  Q  C  S  C  T  W  H  N  R  R  A  G  Y  *  H  E  T  S  N  *  S  M  G  E  K  *  E  S  H  P  L  P  Q  F  C  K  G  Y  W  L  H  C  C  Q  Y  W  H  S  G  P  V  *  R  T   : T  S  P  N  T  W  A  F  F  S  N   </second_frame>
            <third_frame>   K  V  T  I  G  D  L  P  P  L  M  A  K  L  K  A  F  N  E  M  F  N  E  E  E  I  R  N  I  L  A  E  S  G  S  D  V  N  D  E  I  D  F  E  S  F  L  K  :  T  Y  L  N  L  Q  A  R  A  A  P  K  V  G  S  S  K  S  S  S  S  F  L  K  A  S  T  T  T  L  L  H  T  I  S  E  S  E  K  S  S  Y  V  A  H  I  N  S  Y  L  R  D  D  P  F  L  K  Q  F  L  P  I  D  P  A  S  N  A  L  F  D  L  A  K  D  G  V  L  L  C :   K  L  I  N  V  A  V  P  G  T  I  D  E  R  A  I  N  M  K  R  V  I  N  P  W  E  R  N  E  N  H  T  L  C  L  N  S  A  K  A  I  G  C  T  V  V  N  I  G  T  Q  D  L  F  E  G  R  :  P  H  L  I  L  G  L  F  S  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="644" stop="787"/>
                    <exon start="1015" stop="1253"/>
                    <exon start="1339" stop="1510"/>
                    <exon start="1598" stop="1630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVTIGDLPPLMAKLKAFNEMFNEEEIRNILAESGSDVNDEIDFESFLKTYLNLQARAAPKVGSSKSSSSFLKASTTTLLHTISESEKSSYVAHINSYLRDDPFLKQFLPIDPASNALFDLAKDGVLLCKLINVAVPGTIDERAINMKRVINPWERNENHTLCLNSAKAIGCTVVNIGTQDLFEGRPHLILGLFSQI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4881" PGL_stop="5678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4881" e_stop="5044"/>
            <exon e_start="5340" e_stop="5452"/>
            <exon e_start="5561" e_stop="5678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.990" e_score="0.951"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.982"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="4881" e_stop="5044" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="5045" i_stop="5339" i_length="295"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="5340" e_stop="5452" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5453" i_stop="5560" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.880">
            <gDNA_exon_boundary e_start="5561" e_stop="5678" e_length="118"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4881" stop="5044"/>
              <exon start="5340" stop="5452"/>
              <exon start="5561" stop="5678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCTCTCTCTCTTCCTCCTCTGTTTTTGCTCCAAATCAAAGCAAACACCCATCTCTCTCTGTTGAAGAGTTTTCTATAATTGACAAGAACAGTCAAAACCTTTGAAATTAACAAGAAAACGAAGTTCGTTTAAGCAAATCTTTGGTTTTTTTTTTTAAGTAAG : TAGTACTGGGAATCGCGGGGGAAAGGGAGATGTCTTTTGTTGGTGTTATGGTTTCTGATCAATGGCTACATAGTCAATTCATTCAGGTGGAGCTTCGCAGCCTCAAATCGAAA : TTCATTTCAGTTAAAAGTCAAAATGGTAAAATTAACATTGGAGACTTACCGCCTTGATGGCGAAACTAAAAGGTTTCAATGAAATGTTAATGAGGAAAAAATCCGGAATATTTGGNTG</gDNA_template>
            <first_frame> L  L  S  L  F  L  L  C  F  C  S  K  S  K  Q  T  P  I  S  L  C  *  R  V  F  Y  N  *  Q  E  Q  S  K  P  L  K  L  T  R  K  R  S  S  F  K  Q  I  F  G  F  F  F  *  V  S :   S  T  G  N  R  G  G  K  G  D  V  F  C  W  C  Y  G  F  *  S  M  A  T  *  S  I  H  S  G  G  A  S  Q  P  Q  I  E   : I  H  F  S  *  K  S  K  W  *  N  *  H  W  R  L  T  A  L  M  A  K  L  K  G  F  N  E  M  L  M  R  K  K  S  G  I  F  G   </first_frame>
            <second_frame>  F  S  L  S  S  S  S  V  F  A  P  N  Q  S  K  H  P  S  L  S  V  E  E  F  S  I  I  D  K  N  S  Q  N  L  *  N  *  Q  E  N  E  V  R  L  S  K  S  L  V  F  F  F  K  *   : V  V  L  G  I  A  G  E  R  E  M  S  F  V  G  V  M  V  S  D  Q  W  L  H  S  Q  F  I  Q  V  E  L  R  S  L  K  S  K  :  F  I  S  V  K  S  Q  N  G  K  I  N  I  G  D  L  P  P  *  W  R  N  *  K  V  S  M  K  C  *  *  G  K  N  P  E  Y  L  V  </second_frame>
            <third_frame>   S  L  S  L  P  P  L  F  L  L  Q  I  K  A  N  T  H  L  S  L  L  K  S  F  L  *  L  T  R  T  V  K  T  F  E  I  N  K  K  T  K  F  V  *  A  N  L  W  F  F  F  L  S  K  :  *  Y  W  E  S  R  G  K  G  R  C  L  L  L  V  L  W  F  L  I  N  G  Y  I  V  N  S  F  R  W  S  F  A  A  S  N  R  N :   S  F  Q  L  K  V  K  M  V  K  L  T  L  E  T  Y  R  L  D  G  E  T  K  R  F  Q  *  N  V  N  E  E  K  I  R  N  I  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0061J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="9217" PGL_stop="10067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9217" e_stop="9550"/>
            <exon e_start="9819" e_stop="10067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9217" e_stop="9550" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.961">
            <gDNA_intron_boundary i_start="9551" i_stop="9818" i_length="268"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="9819" e_stop="10067" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9217" stop="9550"/>
              <exon start="9819" stop="10067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCGTAGAAAACGCCATTTCAAAGAAATTGAGAGAAGGAATTGTGAAGCTTGATTCTTCATTGCAGTCCCTACCAAAGGAAATTCCAATAAGAAACATTGCTGCTTTAAATGTTACCTTTGTTGGTAACCCACAATTTAGAGACTCGTCTCTTGTTCTTTCAATTAATGGGTTAATTAGTGCCAAGGAAGCATACACAGTACCTCCTTACTATCACTTATTTGCGTCTCTAGAACACTTATTAGCGTCAATTCCTTTGAAGGATCCGGAAAGCATGGTTACTATTTCCTTGCATGAAAAAGTTTTAGCGTCTGCATCAGCTGTTTACTATGAT : GCCAATAAAATGCACTGGATTGTTGACAAAGTACCCGAACAGTCCTTGTTAAACACAGCTGGATGGAGGTTCATTATCCCACAACTTTACAGGCGATATCCAAATGCTGATATGAATCTGAATGTTTCCATTTATTCTCCACCCCATCTGATAATTAAAGAACATCAGATTGATCTGACGGTTCATGCAGATGTCATTATTAATGTTTTGAATTCAGGTGAAGTGACACCAGTTGCATGCTTTTCAATG</gDNA_template>
            <first_frame> C  R  R  K  R  H  F  K  E  I  E  R  R  N  C  E  A  *  F  F  I  A  V  P  T  K  G  N  S  N  K  K  H  C  C  F  K  C  Y  L  C  W  *  P  T  I  *  R  L  V  S  C  S  F  N  *  W  V  N  *  C  Q  G  S  I  H  S  T  S  L  L  S  L  I  C  V  S  R  T  L  I  S  V  N  S  F  E  G  S  G  K  H  G  Y  Y  F  L  A  *  K  S  F  S  V  C  I  S  C  L  L  *   : C  Q  *  N  A  L  D  C  *  Q  S  T  R  T  V  L  V  K  H  S  W  M  E  V  H  Y  P  T  T  L  Q  A  I  S  K  C  *  Y  E  S  E  C  F  H  L  F  S  T  P  S  D  N  *  R  T  S  D  *  S  D  G  S  C  R  C  H  Y  *  C  F  E  F  R  *  S  D  T  S  C  M  L  F  N  </first_frame>
            <second_frame>  A  V  E  N  A  I  S  K  K  L  R  E  G  I  V  K  L  D  S  S  L  Q  S  L  P  K  E  I  P  I  R  N  I  A  A  L  N  V  T  F  V  G  N  P  Q  F  R  D  S  S  L  V  L  S  I  N  G  L  I  S  A  K  E  A  Y  T  V  P  P  Y  Y  H  L  F  A  S  L  E  H  L  L  A  S  I  P  L  K  D  P  E  S  M  V  T  I  S  L  H  E  K  V  L  A  S  A  S  A  V  Y  Y  D  :  A  N  K  M  H  W  I  V  D  K  V  P  E  Q  S  L  L  N  T  A  G  W  R  F  I  I  P  Q  L  Y  R  R  Y  P  N  A  D  M  N  L  N  V  S  I  Y  S  P  P  H  L  I  I  K  E  H  Q  I  D  L  T  V  H  A  D  V  I  I  N  V  L  N  S  G  E  V  T  P  V  A  C  F  S  M </second_frame>
            <third_frame>   P  *  K  T  P  F  Q  R  N  *  E  K  E  L  *  S  L  I  L  H  C  S  P  Y  Q  R  K  F  Q  *  E  T  L  L  L  *  M  L  P  L  L  V  T  H  N  L  E  T  R  L  L  F  F  Q  L  M  G  *  L  V  P  R  K  H  T  Q  Y  L  L  T  I  T  Y  L  R  L  *  N  T  Y  *  R  Q  F  L  *  R  I  R  K  A  W  L  L  F  P  C  M  K  K  F  *  R  L  H  Q  L  F  T  M  M :   P  I  K  C  T  G  L  L  T  K  Y  P  N  S  P  C  *  T  Q  L  D  G  G  S  L  S  H  N  F  T  G  D  I  Q  M  L  I  *  I  *  M  F  P  F  I  L  H  P  I  *  *  L  K  N  I  R  L  I  *  R  F  M  Q  M  S  L  L  M  F  *  I  Q  V  K  *  H  Q  L  H  A  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9218" stop="9550"/>
                    <exon start="9819" stop="10067"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVENAISKKLREGIVKLDSSLQSLPKEIPIRNIAALNVTFVGNPQFRDSSLVLSINGLISAKEAYTVPPYYHLFASLEHLLASIPLKDPESMVTISLHEKVLASASAVYYDANKMHWIVDKVPEQSLLNTAGWRFIIPQLYRRYPNADMNLNVSIYSPPHLIIKEHQIDLTVHADVIINVLNSGEVTPVACFSM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="10746" PGL_stop="11808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10746" e_stop="10879"/>
            <exon e_start="11399" e_stop="11808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10746" e_stop="10879" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.928">
            <gDNA_intron_boundary i_start="10880" i_stop="11398" i_length="519"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="11399" e_stop="11808" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10746" stop="10879"/>
              <exon start="11399" stop="11808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGCAGGCAGTCAGTGGCTCAGCTTCTCCATGGATTTCCAACAATAATCTTGGAGGAAGTATTGGATTAGATGAACTCTCTTTATCTTTGAAATGGAGTAAAATTGGCAATTTGCATGTGAATCTAGTCCGG : GCACTGATTTCAACTGCACTGAGGACTGTGATCCTGCCATACATAAATTTAAAACTTAGTAGAGGATATCAGCTGCCCACATTTCACGGCTACATGCTTCAAAATGCTAATATCTTGTGCAGTGACTCATGGATTAAGATTTCCAGTGACGTTGCGTCTGTCAATCAATTATTTATAAGTTAGTTCCTACATCACATGGTTGTGAGCTATGTTGCTTGGACCCTCTAAAATGCTGCTACTCTCGTGTCAAATCCTCCAAAATTGGATAGCTTTTGGAGGATCCAAGACACACCTGACAGTATGTTTGAAGGGTCTGATCAACGTAAGTTGTGAGTTCCTCATTCCCACTGCACCAGACGCTTTTACTGAAATGTAGCTTTTGGAGAATCCGACAGACAAAAATGTATACT</gDNA_template>
            <first_frame> D  C  R  Q  S  V  A  Q  L  L  H  G  F  P  T  I  I  L  E  E  V  L  D  *  M  N  S  L  Y  L  *  N  G  V  K  L  A  I  C  M  *  I  *  S  G :   H  *  F  Q  L  H  *  G  L  *  S  C  H  T  *  I  *  N  L  V  E  D  I  S  C  P  H  F  T  A  T  C  F  K  M  L  I  S  C  A  V  T  H  G  L  R  F  P  V  T  L  R  L  S  I  N  Y  L  *  V  S  S  Y  I  T  W  L  *  A  M  L  L  G  P  S  K  M  L  L  L  S  C  Q  I  L  Q  N  W  I  A  F  G  G  S  K  T  H  L  T  V  C  L  K  G  L  I  N  V  S  C  E  F  L  I  P  T  A  P  D  A  F  T  E  M  *  L  L  E  N  P  T  D  K  N  V  Y  </first_frame>
            <second_frame>  I  A  G  S  Q  W  L  S  F  S  M  D  F  Q  Q  *  S  W  R  K  Y  W  I  R  *  T  L  F  I  F  E  M  E  *  N  W  Q  F  A  C  E  S  S  P   : G  T  D  F  N  C  T  E  D  C  D  P  A  I  H  K  F  K  T  *  *  R  I  S  A  A  H  I  S  R  L  H  A  S  K  C  *  Y  L  V  Q  *  L  M  D  *  D  F  Q  *  R  C  V  C  Q  S  I  I  Y  K  L  V  P  T  S  H  G  C  E  L  C  C  L  D  P  L  K  C  C  Y  S  R  V  K  S  S  K  I  G  *  L  L  E  D  P  R  H  T  *  Q  Y  V  *  R  V  *  S  T  *  V  V  S  S  S  F  P  L  H  Q  T  L  L  L  K  C  S  F  W  R  I  R  Q  T  K  M  Y  T </second_frame>
            <third_frame>   L  Q  A  V  S  G  S  A  S  P  W  I  S  N  N  N  L  G  G  S  I  G  L  D  E  L  S  L  S  L  K  W  S  K  I  G  N  L  H  V  N  L  V  R  :  A  L  I  S  T  A  L  R  T  V  I  L  P  Y  I  N  L  K  L  S  R  G  Y  Q  L  P  T  F  H  G  Y  M  L  Q  N  A  N  I  L  C  S  D  S  W  I  K  I  S  S  D  V  A  S  V  N  Q  L  F  I  S  *  F  L  H  H  M  V  V  S  Y  V  A  W  T  L  *  N  A  A  T  L  V  S  N  P  P  K  L  D  S  F  W  R  I  Q  D  T  P  D  S  M  F  E  G  S  D  Q  R  K  L  *  V  P  H  S  H  C  T  R  R  F  Y  *  N  V  A  F  G  E  S  D  R  Q  K  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10748" stop="10879"/>
                    <exon start="11399" stop="11581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQAVSGSASPWISNNNLGGSIGLDELSLSLKWSKIGNLHVNLVRALISTALRTVILPYINLKLSRGYQLPTFHGYMLQNANILCSDSWIKISSDVASVNQLFIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17676" PGL_stop="20198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17676" e_stop="17697"/>
            <exon e_start="17796" e_stop="18194"/>
            <exon e_start="18838" e_stop="19207"/>
            <exon e_start="19711" e_stop="19947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.867" e_score="0.955"/>
          <exon-intron don_prob="0.879" acc_prob="0.992" e_score="0.997"/>
          <exon-intron don_prob="0.954" acc_prob="0.914" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="17676" e_stop="17697" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="17698" i_stop="17795" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="17796" e_stop="18194" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.992">
            <gDNA_intron_boundary i_start="18195" i_stop="18837" i_length="643"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="18838" e_stop="19207" e_length="370"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.914">
            <gDNA_intron_boundary i_start="19208" i_stop="19710" i_length="503"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19711" e_stop="19947" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17676" stop="17697"/>
              <exon start="17796" stop="18194"/>
              <exon start="18838" stop="19207"/>
              <exon start="19711" stop="19727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18912" stop="19207"/>
              <exon start="19711" stop="19947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTCAATTACCCGCCAATAAG : TAGATTTGAATGGCTGAGATCGAACCAGATCGGGTATTGGAAGTATTGGGGAAGAGGAGGCTGGTAGCGGTGGATGATAGGAGATTGACGAAGAAGGCAAGGGAGGTGGTGGATGGGAATGTGAGGGAAGTTGCTGAGATGGTGCTTGTATTATCTGCTCTAGGGAAGATGAGAGGAGGTAGAGGTCCAACTGTTGCAGAGAAGGAGATGGTGGAGGAGGCTAGGGAGAGATTAGCTGAGGTTTGTTTGAAGTTTGCGCCGAAGGATGTGTTTCCGAGTGATGGTTTTGGAAGTGTTATTGAGGATCTTGGGATTAATAAGCTGACGGATGTGAGTGTAGGGTATTGGCAGCCTCCTAAAATGTCGATTACTGAGAAGCTGCTGGTTGTGAAAAGAAAG : ATGGAAAAGGCGCAGGAATTTTCTCTACCCTCTGCCAGCTACCCATCTCAACGGTCTCAAATAGCAATGGGTACAGCAACTGAAAGCCATAGTGCATCACAGATTAAAATGTTTCCTCAACCAAGTCATGCAGTAAATTCATCAGGCAGCTTACAACCTGCTTCACCTATGGAACATGGGACTCCATTAAGTTCTGCATCTTTGCCTTATCAGCTGCCCACCAGTGAGGTCAGGCCTTTAATCAACGGTGGGGTGGTCTCTGGTAATCTTGTAAGGGATTCTTCTTCAGTTGCATCTCCCAGAGTTGGAAGACATCATTTCCAAATGGATGGACGGCAAAGTGGATCTTCCCATGCATTGCAAGTTCAAG : CAACTACTGGCAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGA</gDNA_template>
            <first_frame> D  S  I  T  R  Q  *   : V  D  L  N  G  *  D  R  T  R  S  G  I  G  S  I  G  E  E  E  A  G  S  G  G  *  *  E  I  D  E  E  G  K  G  G  G  G  W  E  C  E  G  S  C  *  D  G  A  C  I  I  C  S  R  E  D  E  R  R  *  R  S  N  C  C  R  E  G  D  G  G  G  G  *  G  E  I  S  *  G  L  F  E  V  C  A  E  G  C  V  S  E  *  W  F  W  K  C  Y  *  G  S  W  D  *  *  A  D  G  C  E  C  R  V  L  A  A  S  *  N  V  D  Y  *  E  A  A  G  C  E  K  K   : D  G  K  G  A  G  I  F  S  T  L  C  Q  L  P  I  S  T  V  S  N  S  N  G  Y  S  N  *  K  P  *  C  I  T  D  *  N  V  S  S  T  K  S  C  S  K  F  I  R  Q  L  T  T  C  F  T  Y  G  T  W  D  S  I  K  F  C  I  F  A  L  S  A  A  H  Q  *  G  Q  A  F  N  Q  R  W  G  G  L  W  *  S  C  K  G  F  F  F  S  C  I  S  Q  S  W  K  T  S  F  P  N  G  W  T  A  K  W  I  F  P  C  I  A  S  S  S :   N  Y  W  Q  S  L  N  C  Q  N  S  N  L  V  G  A  T  C  I  S  F  S  S  S  T  W  G  G  S  Q  G  D  T  T  C  N  Y  *  N  *  G  R  C  *  C  Q  V  N  N  G  T  T  S  D  N  I  *  V  I  Y  Y  *  E  H  I  W  K  F  T  K  H  I  P  S  F  T  R  H   </first_frame>
            <second_frame>  T  Q  L  P  A  N  K  :  *  I  *  M  A  E  I  E  P  D  R  V  L  E  V  L  G  K  R  R  L  V  A  V  D  D  R  R  L  T  K  K  A  R  E  V  V  D  G  N  V  R  E  V  A  E  M  V  L  V  L  S  A  L  G  K  M  R  G  G  R  G  P  T  V  A  E  K  E  M  V  E  E  A  R  E  R  L  A  E  V  C  L  K  F  A  P  K  D  V  F  P  S  D  G  F  G  S  V  I  E  D  L  G  I  N  K  L  T  D  V  S  V  G  Y  W  Q  P  P  K  M  S  I  T  E  K  L  L  V  V  K  R  K  :  M  E  K  A  Q  E  F  S  L  P  S  A  S  Y  P  S  Q  R  S  Q  I  A  M  G  T  A  T  E  S  H  S  A  S  Q  I  K  M  F  P  Q  P  S  H  A  V  N  S  S  G  S  L  Q  P  A  S  P  M  E  H  G  T  P  L  S  S  A  S  L  P  Y  Q  L  P  T  S  E  V  R  P  L  I  N  G  G  V  V  S  G  N  L  V  R  D  S  S  S  V  A  S  P  R  V  G  R  H  H  F  Q  M  D  G  R  Q  S  G  S  S  H  A  L  Q  V  Q   : A  T  T  G  N  H  S  T  V  R  T  P  T  W  S  V  L  P  A  S  V  S  A  A  R  L  G  A  D  H  K  A  T  P  H  A  T  I  K  I  E  G  G  A  D  V  R  S  T  M  A  P  Q  V  T  T  S  R  S  F  I  T  E  S  T  S  G  N  S  P  S  T  Y  P  H  L  Q  G  T  </second_frame>
            <third_frame>   L  N  Y  P  P  I  S :   R  F  E  W  L  R  S  N  Q  I  G  Y  W  K  Y  W  G  R  G  G  W  *  R  W  M  I  G  D  *  R  R  R  Q  G  R  W  W  M  G  M  *  G  K  L  L  R  W  C  L  Y  Y  L  L  *  G  R  *  E  E  V  E  V  Q  L  L  Q  R  R  R  W  W  R  R  L  G  R  D  *  L  R  F  V  *  S  L  R  R  R  M  C  F  R  V  M  V  L  E  V  L  L  R  I  L  G  L  I  S  *  R  M  *  V  *  G  I  G  S  L  L  K  C  R  L  L  R  S  C  W  L  *  K  E  R :   W  K  R  R  R  N  F  L  Y  P  L  P  A  T  H  L  N  G  L  K  *  Q  W  V  Q  Q  L  K  A  I  V  H  H  R  L  K  C  F  L  N  Q  V  M  Q  *  I  H  Q  A  A  Y  N  L  L  H  L  W  N  M  G  L  H  *  V  L  H  L  C  L  I  S  C  P  P  V  R  S  G  L  *  S  T  V  G  W  S  L  V  I  L  *  G  I  L  L  Q  L  H  L  P  E  L  E  D  I  I  S  K  W  M  D  G  K  V  D  L  P  M  H  C  K  F  K  :  Q  L  L  A  I  T  Q  L  S  E  L  Q  L  G  R  C  Y  L  H  Q  F  Q  Q  L  D  L  G  R  I  T  R  R  H  H  M  Q  L  L  K  L  R  E  V  L  M  S  G  Q  Q  W  H  H  K  *  Q  H  L  G  H  L  L  L  R  A  H  L  E  I  H  Q  A  H  T  L  I  Y  K  A  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17805" stop="18194"/>
                    <exon start="18838" stop="19207"/>
                    <exon start="19711" stop="19946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAEIEPDRVLEVLGKRRLVAVDDRRLTKKAREVVDGNVREVAEMVLVLSALGKMRGGRGPTVAEKEMVEEARERLAEVCLKFAPKDVFPSDGFGSVIEDLGINKLTDVSVGYWQPPKMSITEKLLVVKRKMEKAQEFSLPSASYPSQRSQIAMGTATESHSASQIKMFPQPSHAVNSSGSLQPASPMEHGTPLSSASLPYQLPTSEVRPLINGGVVSGNLVRDSSSVASPRVGRHHFQMDGRQSGSSHALQVQATTGNHSTVRTPTWSVLPASVSAARLGADHKATPHATIKIEGGADVRSTMAPQVTTSRSFITESTSGNSPSTYPHLQGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19704" e_stop="20198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="19704" e_stop="20198" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19704" stop="20198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTAGCAACTACTGGCAATCACTCAACTGTCAGAACTCCAACTTGGTCGGTGCTACCTGCATCAGTTTCAGCAGCTCGACTTGGGGCGGATCACAAGGCGACACCACATGCAACTATTAAAATTGAGGGAGGTGCTGATGTCAGGTCAACAATGGCACCACAAGTGACAACATCTAGGTCATTTATTACTGAGAGCACATCTGGAAATTCACCAAGCACATACCCTCATTTACAAGGCACGAGCTTTATTCAGGCTTCTCCTCTGAGCAGTACACATTCTGAAATTGGCAAGCTTGTTCACAAATTCTTACAGCCTCTGCTTCCTGAGCGGCCTGCATGGACTCTGCCATCCCGTGATTACATGAATAAGGCTTTGGCTTGTCAAATGTGCAATTCAACAATAAATGAGGTTGACAACGTACTTGTGTGTGATGCTTGTGAAAAAGGCTACCACTTAAAATGTCTCCAAACAACAAGTCAAAAAAATGTACCT</gDNA_template>
            <first_frame> F  V  A  T  T  G  N  H  S  T  V  R  T  P  T  W  S  V  L  P  A  S  V  S  A  A  R  L  G  A  D  H  K  A  T  P  H  A  T  I  K  I  E  G  G  A  D  V  R  S  T  M  A  P  Q  V  T  T  S  R  S  F  I  T  E  S  T  S  G  N  S  P  S  T  Y  P  H  L  Q  G  T  S  F  I  Q  A  S  P  L  S  S  T  H  S  E  I  G  K  L  V  H  K  F  L  Q  P  L  L  P  E  R  P  A  W  T  L  P  S  R  D  Y  M  N  K  A  L  A  C  Q  M  C  N  S  T  I  N  E  V  D  N  V  L  V  C  D  A  C  E  K  G  Y  H  L  K  C  L  Q  T  T  S  Q  K  N  V  P </first_frame>
            <second_frame>  L  *  Q  L  L  A  I  T  Q  L  S  E  L  Q  L  G  R  C  Y  L  H  Q  F  Q  Q  L  D  L  G  R  I  T  R  R  H  H  M  Q  L  L  K  L  R  E  V  L  M  S  G  Q  Q  W  H  H  K  *  Q  H  L  G  H  L  L  L  R  A  H  L  E  I  H  Q  A  H  T  L  I  Y  K  A  R  A  L  F  R  L  L  L  *  A  V  H  I  L  K  L  A  S  L  F  T  N  S  Y  S  L  C  F  L  S  G  L  H  G  L  C  H  P  V  I  T  *  I  R  L  W  L  V  K  C  A  I  Q  Q  *  M  R  L  T  T  Y  L  C  V  M  L  V  K  K  A  T  T  *  N  V  S  K  Q  Q  V  K  K  M  Y   </second_frame>
            <third_frame>   C  S  N  Y  W  Q  S  L  N  C  Q  N  S  N  L  V  G  A  T  C  I  S  F  S  S  S  T  W  G  G  S  Q  G  D  T  T  C  N  Y  *  N  *  G  R  C  *  C  Q  V  N  N  G  T  T  S  D  N  I  *  V  I  Y  Y  *  E  H  I  W  K  F  T  K  H  I  P  S  F  T  R  H  E  L  Y  S  G  F  S  S  E  Q  Y  T  F  *  N  W  Q  A  C  S  Q  I  L  T  A  S  A  S  *  A  A  C  M  D  S  A  I  P  *  L  H  E  *  G  F  G  L  S  N  V  Q  F  N  N  K  *  G  *  Q  R  T  C  V  *  C  L  *  K  R  L  P  L  K  M  S  P  N  N  K  S  K  K  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19704" stop="20198"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVATTGNHSTVRTPTWSVLPASVSAARLGADHKATPHATIKIEGGADVRSTMAPQVTTSRSFITESTSGNSPSTYPHLQGTSFIQASPLSSTHSEIGKLVHKFLQPLLPERPAWTLPSRDYMNKALACQMCNSTINEVDNVLVCDACEKGYHLKCLQTTSQKNVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="26040" PGL_stop="34210"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26040" e_stop="26667"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="26040" e_stop="26667" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26040" stop="26667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26045" stop="26588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26047" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26049" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26049" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26070" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26152" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26154" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26278" stop="26516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGGGTTCGGTTATTCGTTAATGTATTTTTTCTTACACGCACCAACTATAATAATTGTGCCTCGATCCCTAGTAAGTTGGGAATGTTAGGG</gDNA_template>
            <first_frame> Q  N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W  G  S  V  I  R  *  C  I  F  S  Y  T  H  Q  L  *  *  L  C  L  D  P  *  *  V  G  N  V  R  </first_frame>
            <second_frame>  K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  V  R  L  F  V  N  V  F  F  L  T  R  T  N  Y  N  N  C  A  S  I  P  S  K  L  G  M  L  G </second_frame>
            <third_frame>   K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G  F  G  Y  S  L  M  Y  F  F  L  H  A  P  T  I  I  I  V  P  R  S  L  V  S  W  E  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26041" stop="26358"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26041" e_stop="26580"/>
            <exon e_start="27344" e_stop="27402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26041" e_stop="26580" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26581" i_stop="27343" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="0.000">
            <gDNA_exon_boundary e_start="27344" e_stop="27402" e_length="59"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26047" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26049" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26049" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26070" stop="26580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26149" stop="26580"/>
              <exon start="27344" stop="27402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26152" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26154" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26278" stop="26516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTTGTTGGG : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  V  G  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L  L  G :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S  C  W   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26041" stop="26358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26041" e_stop="26574"/>
            <exon e_start="34035" e_stop="34066"/>
            <exon e_start="34118" e_stop="34210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.628" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.719"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26041" e_stop="26574" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.628">
            <gDNA_intron_boundary i_start="26575" i_stop="34034" i_length="7460"/>
          </intron>
          <exon e_serial="2" e_score="0.719">
            <gDNA_exon_boundary e_start="34035" e_stop="34066" e_length="32"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34067" i_stop="34117" i_length="51"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34118" e_stop="34210" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26047" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26152" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26154" stop="26574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26193" stop="26574"/>
              <exon start="34035" stop="34066"/>
              <exon start="34118" stop="34210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26278" stop="26516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGAGTT : AAAAGTAAATAAAAGCAAAAGGAGAGAAAAAA : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  V  :  K  S  K  *  K  Q  K  E  R  K  K :   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  E  L :   K  V  N  K  S  K  R  R  E  K   : N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L  S   : *  K  *  I  K  A  K  G  E  K  K  :  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26041" stop="26358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="26041" e_stop="26571"/>
            <exon e_start="27377" e_stop="27409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26041" e_stop="26571" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26572" i_stop="27376" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="27377" e_stop="27409" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26041" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26044" stop="26520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26069" stop="26571"/>
              <exon start="27377" stop="27409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213293" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26095" stop="26547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26152" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26229" stop="26571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26278" stop="26516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCTAAATCATATAGTACAATGATTTTTTTGCTTTTTGCACTGATTATCACAGTACAAATTGCAACAATAAATGCTGCAGAAACACCAGAAGTTATTTGCAAGGTCACAATCAATGACCTTATGCTATGTTTACCTGCAGTAATGGGGAAGAGACCTCCGAAACCGACGCCGGATTGTTGCGCAGTGCTACGCAAGGCTGATTTACAGTGTATGTGCAACCAGAAATCTGAGTTGGGGAAATTTGGAATCAGTCCTGAAGCTGCAATGAATCTGCCTAAGCAATGTAAAATTAAGGTTCCCGATGGATGTTAACATCTGCGTACACTCTATTCTCTCCAATTTCTACTTGTGGGATTTTAGTGCGTATGCTAGAGAAGTGTTGGGACTAATTAAGAAAAAAGAGCATGTATTTTTACCTGATTTTGTTTTGAATTGTTTCGCTTCACTTTGTGAAGTTTGACATTTTTTTTTTTTATGTGCGTTTGTAATTTCTGGTATTTGAGAATTTAAATAAACTTTCTTTGA : NNNNNNNNNNNNNNNNNNNNNNNNNNTGGNCTC</gDNA_template>
            <first_frame> K  M  A  K  S  Y  S  T  M  I  F  L  L  F  A  L  I  I  T  V  Q  I  A  T  I  N  A  A  E  T  P  E  V  I  C  K  V  T  I  N  D  L  M  L  C  L  P  A  V  M  G  K  R  P  P  K  P  T  P  D  C  C  A  V  L  R  K  A  D  L  Q  C  M  C  N  Q  K  S  E  L  G  K  F  G  I  S  P  E  A  A  M  N  L  P  K  Q  C  K  I  K  V  P  D  G  C  *  H  L  R  T  L  Y  S  L  Q  F  L  L  V  G  F  *  C  V  C  *  R  S  V  G  T  N  *  E  K  R  A  C  I  F  T  *  F  C  F  E  L  F  R  F  T  L  *  S  L  T  F  F  F  F  M  C  V  C  N  F  W  Y  L  R  I  *  I  N  F  L  *  :  F  F  F  F  F  F  F  F  F  G  L </first_frame>
            <second_frame>  K  W  L  N  H  I  V  Q  *  F  F  C  F  L  H  *  L  S  Q  Y  K  L  Q  Q  *  M  L  Q  K  H  Q  K  L  F  A  R  S  Q  S  M  T  L  C  Y  V  Y  L  Q  *  W  G  R  D  L  R  N  R  R  R  I  V  A  Q  C  Y  A  R  L  I  Y  S  V  C  A  T  R  N  L  S  W  G  N  L  E  S  V  L  K  L  Q  *  I  C  L  S  N  V  K  L  R  F  P  M  D  V  N  I  C  V  H  S  I  L  S  N  F  Y  L  W  D  F  S  A  Y  A  R  E  V  L  G  L  I  K  K  K  E  H  V  F  L  P  D  F  V  L  N  C  F  A  S  L  C  E  V  *  H  F  F  F  L  C  A  F  V  I  S  G  I  *  E  F  K  *  T  F  F  D :   F  F  F  F  F  F  F  F  L  V   </second_frame>
            <third_frame>   N  G  *  I  I  *  Y  N  D  F  F  A  F  C  T  D  Y  H  S  T  N  C  N  N  K  C  C  R  N  T  R  S  Y  L  Q  G  H  N  Q  *  P  Y  A  M  F  T  C  S  N  G  E  E  T  S  E  T  D  A  G  L  L  R  S  A  T  Q  G  *  F  T  V  Y  V  Q  P  E  I  *  V  G  E  I  W  N  Q  S  *  S  C  N  E  S  A  *  A  M  *  N  *  G  S  R  W  M  L  T  S  A  Y  T  L  F  S  P  I  S  T  C  G  I  L  V  R  M  L  E  K  C  W  D  *  L  R  K  K  S  M  Y  F  Y  L  I  L  F  *  I  V  S  L  H  F  V  K  F  D  I  F  F  F  Y  V  R  L  *  F  L  V  F  E  N  L  N  K  L  S  L   : I  F  F  F  F  F  F  F  F  W  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26041" stop="26358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAKSYSTMIFLLFALIITVQIATINAAETPEVICKVTINDLMLCLPAVMGKRPPKPTPDCCAVLRKADLQCMCNQKSELGKFGISPEAAMNLPKQCKIKVPDGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="28530" e_stop="29139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="28530" e_stop="29139" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28530" stop="29139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28549" stop="29111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCTAAAAAAAAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGACAACTATTCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTCTACATTTGCGTTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGCAAATGTTCTTACCCTTTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATATACTATTTGTTAAATAATAAATAAATTAAAGGATGAAAAGTCACCAGAAATTAGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTAGATTCAACCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAATATTCTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGATTAGAGATACGTTAATCAAAGGATTTCTTGTTGATTCAATTTTGAACTAAAAAAACAAACAAAATATATGGCAAAAAAATACTTGCAATTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATGAGAGATAAAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAAAATATGAGAGAGAATAATTTT</gDNA_template>
            <first_frame> K  F  *  K  K  T  I  N  T  K  Q  T  N  R  K  L  F  D  N  Y  S  I  F  V  V  F  F  K  I  L  T  S  R  Q  R  F  Y  I  C  V  L  N  L  R  K  V  L  H  T  N  E  S  C  K  C  S  Y  P  F  S  S  L  I  L  A  A  D  H  T  L  Y  T  I  C  *  I  I  N  K  L  K  D  E  K  S  P  E  I  S  *  L  R  *  I  P  L  V  S  L  L  D  S  T  I  G  E  *  I  I  T  E  I  E  K  Y  K  Q  Y  S  F  K  I  *  T  K  I  K  L  E  K  K  S  E  N  R  I  K  I  R  D  T  L  I  K  G  F  L  V  D  S  I  L  N  *  K  N  K  Q  N  I  W  Q  K  N  T  C  N  L  N  V  G  G  K  S  E  K  I  T  M  R  D  K  K  N  *  M  G  E  R  I  N  N  L  K  R  *  K  Y  E  R  E  *  F  </first_frame>
            <second_frame>  N  S  K  K  K  L  *  I  Q  N  K  L  I  E  N  C  S  T  T  I  R  S  S  S  S  F  S  R  S  S  R  V  D  K  D  S  T  F  A  F  *  I  *  G  R  F  C  T  P  M  S  L  A  N  V  L  T  L  F  L  P  S  F  *  Q  R  I  I  H  Y  I  L  F  V  K  *  *  I  N  *  R  M  K  S  H  Q  K  L  V  D  *  D  E  Y  L  *  *  A  S  *  I  Q  P  L  E  S  K  S  *  R  K  L  K  N  T  N  N  I  L  L  R  F  K  Q  K  *  N  *  K  R  N  L  K  I  G  *  R  L  E  I  R  *  S  K  D  F  L  L  I  Q  F  *  T  K  K  T  N  K  I  Y  G  K  K  I  L  A  I  *  M  L  E  E  N  Q  K  R  *  P  *  E  I  K  K  I  K  W  E  R  E  L  T  I  *  K  D  K  N  M  R  E  N  N  F </second_frame>
            <third_frame>   I  L  K  K  N  Y  K  Y  K  T  N  *  *  K  I  V  R  Q  L  F  D  L  R  R  L  F  Q  D  P  H  E  *  T  K  I  L  H  L  R  S  E  F  E  E  G  F  A  H  Q  *  V  L  Q  M  F  L  P  F  F  F  P  H  F  S  S  G  S  Y  I  I  Y  Y  L  L  N  N  K  *  I  K  G  *  K  V  T  R  N  *  L  I  K  M  N  T  S  S  K  P  L  R  F  N  H  W  R  V  N  H  N  G  N  *  K  I  Q  T  I  F  F  *  D  L  N  K  N  K  I  R  K  E  I  *  K  *  D  K  D  *  R  Y  V  N  Q  R  I  S  C  *  F  N  F  E  L  K  K  Q  T  K  Y  M  A  K  K  Y  L  Q  F  E  C  W  R  K  I  R  K  D  N  H  E  R  *  K  K  L  N  G  R  E  N  *  Q  F  E  K  I  K  I  *  E  R  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28539" stop="28754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKTINTKQTNRKLFDNYSIFVVFFKILTSRQRFYICVLNLRKVLHTNESCKCSYPFSSLILAADHTLYTIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="34216" PGL_stop="26193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32625" e_stop="31901"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="32625" e_stop="31901" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32625" stop="31901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32624" stop="31957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTATCGCTGTAGATTACCTCAAAAAATCACTTGAGTTGCTGACAAACCCATCAGCTGATC</gDNA_template>
            <first_frame> G  S  S  I  *  W  N  *  F  I  H  Q  T  *  T  R  I  R  F  V  Q  S  H  V  *  Q  C  T  I  T  C  K  T  V  S  S  S  N  H  P  T  T  T  S  F  T  H  P  S  I  A  F  G  I  D  H  T  V  T  S  F  T  F  P  S  I  T  S  F  L  S  *  W  *  V  S  F  S  *  F  S  A  A  S  T  R  *  C  I  *  K  F  F  L  L  P  A  V  S  P  S  T  L  Y  A  R  T  T  V  A  L  V  A  A  A  L  P  F  T  I  P  Q  F  P  V  V  S  *  L  F  R  E  *  S  S  F  C  T  I  A  L  P  F  L  L  P  R  C  G  C  F  V  F  H  I  A  S  I  *  H  C  K  L  S  I  K  R  S  I  Q  L  K  *  Q  K  W  V  C  T  R  S  C  S  C  S  S  E  N  I  R  I  R  Q  Q  L  P  A  P  S  G  E  N  S  *  S  T  Q  G  C  K  V  C  C  R  S  S  G  I  *  *  C  L  Y  R  C  R  L  P  Q  K  I  T  *  V  A  D  K  P  I  S  *   </first_frame>
            <second_frame>  D  L  P  S  S  G  T  D  S  F  I  K  P  E  P  E  S  D  S  S  N  H  M  Y  D  S  A  P  L  P  A  R  P  S  P  P  A  T  T  P  P  P  P  H  S  H  I  P  P  S  P  S  A  S  T  T  Q  S  P  P  S  H  F  P  P  S  P  P  S  Y  P  S  G  E  Y  P  S  H  N  F  Q  Q  P  P  P  G  D  A  S  E  N  S  S  Y  S  Q  P  Y  H  H  Q  P  Y  T  Q  E  P  Q  S  H  L  S  Q  P  H  Y  P  S  Q  Y  P  N  F  Q  S  Y  P  S  F  S  E  S  S  L  P  S  A  P  S  H  Y  P  S  Y  Y  Q  G  A  D  A  S  Y  S  T  L  P  P  S  N  T  A  N  Y  P  S  S  A  Q  Y  N  S  N  D  R  N  G  S  A  P  E  V  A  A  A  P  A  K  T  Y  A  Y  D  S  N  Y  Q  P  P  P  E  K  I  A  E  A  H  K  A  A  R  F  A  V  G  A  L  A  F  D  D  V  S  I  A  V  D  Y  L  K  K  S  L  E  L  L  T  N  P  S  A  D  </second_frame>
            <third_frame>   I  F  H  L  V  E  L  I  H  S  S  N  L  N  Q  N  Q  I  R  P  I  T  C  M  T  V  H  H  Y  L  Q  D  R  L  L  Q  Q  P  P  H  H  H  L  I  H  T  S  L  H  R  L  R  H  R  P  H  S  H  L  L  H  I  S  L  H  H  L  L  P  I  L  V  V  S  I  L  L  I  I  F  S  S  L  H  P  V  M  H  L  K  I  L  L  T  P  S  R  I  T  I  N  L  I  R  K  N  H  S  R  T  C  R  S  R  T  T  L  H  N  T  P  I  S  S  R  I  L  A  F  P  R  V  V  F  L  L  H  H  R  I  T  L  L  T  T  K  V  R  M  L  R  I  P  H  C  L  H  L  T  L  Q  T  I  H  Q  A  L  N  T  T  Q  M  T  E  M  G  L  H  Q  K  L  Q  L  L  Q  R  K  H  T  H  T  T  A  I  T  S  P  L  R  R  K  *  L  K  H  T  R  L  Q  G  L  L  S  E  L  W  H  L  M  M  S  L  S  L  *  I  T  S  K  N  H  L  S  C  *  Q  T  H  Q  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32624" stop="31902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLPSSGTDSFIKPEPESDSSNHMYDSAPLPARPSPPATTPPPPHSHIPPSPSASTTQSPPSHFPPSPPSYPSGEYPSHNFQQPPPGDASENSSYSQPYHHQPYTQEPQSHLSQPHYPSQYPNFQSYPSFSESSLPSAPSHYPSYYQGADASYSTLPPSNTANYPSSAQYNSNDRNGSAPEVAAAPAKTYAYDSNYQPPPEKIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34205" e_stop="34104"/>
            <exon e_start="33901" e_stop="33761"/>
            <exon e_start="32624" e_stop="31957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.438" acc_prob="0.968" e_score="0.867"/>
          <exon-intron don_prob="0.397" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="34205" e_stop="34104" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.438" acc_prob="0.968">
            <gDNA_intron_boundary i_start="34103" i_stop="33902" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33901" e_stop="33761" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.397" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33760" i_stop="32625" i_length="1136"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="32624" e_stop="31957" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34205" stop="34104"/>
              <exon start="33901" stop="33761"/>
              <exon start="32624" stop="32067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32624" stop="31957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392026" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGAT : CTTGAGCAGAAGCAGAAGTATGCAGCGTGGAAGGCAGCAGACATAAGAAAAGCTTTGAAAGAAGGAAGGAAGCCTATACCAGGCCCTCCTGGTGATGAAGGAGATACTTCAGAGTTTACCAGTGTACCAAGTAATACCTAT : GATCTTCCATCTAGTGGAACTGATTCATTCATCAAACCTGAACCAGAATCAGATTCGTCCAATCACATGTATGACAGTGCACCATTACCTGCAAGACCGTCTCCTCCAGCAACCACCCCACCACCACCTCATTCACACATCCCTCCATCGCCTTCGGCATCGACCACACAGTCACCTCCTTCACATTTCCCTCCATCACCTCCTTCCTATCCTAGTGGTGAGTATCCTTCTCATAATTTTCAGCAGCCTCCACCCGGTGATGCATCTGAAAATTCTTCTTACTCCCAGCCGTATCACCATCAACCTTATACGCAAGAACCACAGTCGCACTTGTCGCAGCCGCACTACCCTTCACAATACCCCAATTTCCAGTCGTATCCTAGCTTTTCCGAGAGTAGTCTTCCTTCTGCACCATCGCATTACCCTTCTTACTACCAAGGTGCGGATGCTTCGTATTCCACATTGCCTCCATCTAACACTGCAAACTATCCATCAAGCGCTCAATACAACTCAAATGACAGAAATGGGTCTGCACCAGAAGTTGCAGCTGCTCCAGCGAAAACATACGCATACGACAGCAATTACCAGCCCCCTCCGGAGAAAATAGCTGAAGCACACAAGGCTGCAAGGTTTGCTGTCGGAGCTCTGGCATTTGATGATGTCTCTAT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  Q  P  D  :  L  E  Q  K  Q  K  Y  A  A  W  K  A  A  D  I  R  K  A  L  K  E  G  R  K  P  I  P  G  P  P  G  D  E  G  D  T  S  E  F  T  S  V  P  S  N  T  Y  :  D  L  P  S  S  G  T  D  S  F  I  K  P  E  P  E  S  D  S  S  N  H  M  Y  D  S  A  P  L  P  A  R  P  S  P  P  A  T  T  P  P  P  P  H  S  H  I  P  P  S  P  S  A  S  T  T  Q  S  P  P  S  H  F  P  P  S  P  P  S  Y  P  S  G  E  Y  P  S  H  N  F  Q  Q  P  P  P  G  D  A  S  E  N  S  S  Y  S  Q  P  Y  H  H  Q  P  Y  T  Q  E  P  Q  S  H  L  S  Q  P  H  Y  P  S  Q  Y  P  N  F  Q  S  Y  P  S  F  S  E  S  S  L  P  S  A  P  S  H  Y  P  S  Y  Y  Q  G  A  D  A  S  Y  S  T  L  P  P  S  N  T  A  N  Y  P  S  S  A  Q  Y  N  S  N  D  R  N  G  S  A  P  E  V  A  A  A  P  A  K  T  Y  A  Y  D  S  N  Y  Q  P  P  P  E  K  I  A  E  A  H  K  A  A  R  F  A  V  G  A  L  A  F  D  D  V  S   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  S  S  L  I :   L  S  R  S  R  S  M  Q  R  G  R  Q  Q  T  *  E  K  L  *  K  K  E  G  S  L  Y  Q  A  L  L  V  M  K  E  I  L  Q  S  L  P  V  Y  Q  V  I  P  M :   I  F  H  L  V  E  L  I  H  S  S  N  L  N  Q  N  Q  I  R  P  I  T  C  M  T  V  H  H  Y  L  Q  D  R  L  L  Q  Q  P  P  H  H  H  L  I  H  T  S  L  H  R  L  R  H  R  P  H  S  H  L  L  H  I  S  L  H  H  L  L  P  I  L  V  V  S  I  L  L  I  I  F  S  S  L  H  P  V  M  H  L  K  I  L  L  T  P  S  R  I  T  I  N  L  I  R  K  N  H  S  R  T  C  R  S  R  T  T  L  H  N  T  P  I  S  S  R  I  L  A  F  P  R  V  V  F  L  L  H  H  R  I  T  L  L  T  T  K  V  R  M  L  R  I  P  H  C  L  H  L  T  L  Q  T  I  H  Q  A  L  N  T  T  Q  M  T  E  M  G  L  H  Q  K  L  Q  L  L  Q  R  K  H  T  H  T  T  A  I  T  S  P  L  R  R  K  *  L  K  H  T  R  L  Q  G  L  L  S  E  L  W  H  L  M  M  S  L  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  T  P  A  *   : S  *  A  E  A  E  V  C  S  V  E  G  S  R  H  K  K  S  F  E  R  R  K  E  A  Y  T  R  P  S  W  *  *  R  R  Y  F  R  V  Y  Q  C  T  K  *  Y  L   : *  S  S  I  *  W  N  *  F  I  H  Q  T  *  T  R  I  R  F  V  Q  S  H  V  *  Q  C  T  I  T  C  K  T  V  S  S  S  N  H  P  T  T  T  S  F  T  H  P  S  I  A  F  G  I  D  H  T  V  T  S  F  T  F  P  S  I  T  S  F  L  S  *  W  *  V  S  F  S  *  F  S  A  A  S  T  R  *  C  I  *  K  F  F  L  L  P  A  V  S  P  S  T  L  Y  A  R  T  T  V  A  L  V  A  A  A  L  P  F  T  I  P  Q  F  P  V  V  S  *  L  F  R  E  *  S  S  F  C  T  I  A  L  P  F  L  L  P  R  C  G  C  F  V  F  H  I  A  S  I  *  H  C  K  L  S  I  K  R  S  I  Q  L  K  *  Q  K  W  V  C  T  R  S  C  S  C  S  S  E  N  I  R  I  R  Q  Q  L  P  A  P  S  G  E  N  S  *  S  T  Q  G  C  K  V  C  C  R  S  S  G  I  *  *  C  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34115" stop="34104"/>
                    <exon start="33901" stop="33761"/>
                    <exon start="32624" stop="31959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQPDLEQKQKYAAWKAADIRKALKEGRKPIPGPPGDEGDTSEFTSVPSNTYDLPSSGTDSFIKPEPESDSSNHMYDSAPLPARPSPPATTPPPPHSHIPPSPSASTTQSPPSHFPPSPPSYPSGEYPSHNFQQPPPGDASENSSYSQPYHHQPYTQEPQSHLSQPHYPSQYPNFQSYPSFSESSLPSAPSHYPSYYQGADASYSTLPPSNTANYPSSAQYNSNDRNGSAPEVAAAPAKTYAYDSNYQPPPEKIAEAHKAARFAVGALAFDDVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28546" e_stop="28529"/>
            <exon e_start="27406" e_stop="27298"/>
            <exon e_start="26574" e_stop="26193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.722"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.722">
            <gDNA_exon_boundary e_start="28546" e_stop="28529" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28528" i_stop="27407" i_length="1122"/>
          </intron>
          <exon e_serial="2" e_score="0.625">
            <gDNA_exon_boundary e_start="27406" e_stop="27298" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27297" i_stop="26575" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="26574" e_stop="26193" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28546" stop="28529"/>
              <exon start="27406" stop="27298"/>
              <exon start="26574" stop="26193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553151" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTTTTTAGAATTTG : NCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTT : AACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</gDNA_template>
            <first_frame> V  F  F  *  N  L  :  S  I  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  I   : *  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  E  V  S   </first_frame>
            <second_frame>  F  F  F  R  I  C :   P  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  F  :  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R  R  S  L  </second_frame>
            <third_frame>   F  F  L  E  F   : V  H  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  N  L :   T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F  G  G  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0061J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28561" e_stop="28529"/>
            <exon e_start="26570" e_stop="26306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="28561" e_stop="28529" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28528" i_stop="26571" i_length="1958"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="26570" e_stop="26306" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28561" stop="28529"/>
              <exon start="26570" stop="26306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTGTATTTATAGTTTTTTTTTAGAATTTG : CAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAG</gDNA_template>
            <first_frame> C  F  V  F  I  V  F  F  *  N  L  :  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  </first_frame>
            <second_frame>  V  L  Y  L  *  F  F  F  R  I  C :   K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q </second_frame>
            <third_frame>   F  C  I  Y  S  F  F  L  E  F   : A  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28559" stop="28529"/>
                    <exon start="26570" stop="26389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCIYSFFLEFAKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="34183" e_stop="34104"/>
            <exon e_start="29676" e_stop="29662"/>
            <exon e_start="29022" e_stop="28989"/>
            <exon e_start="28574" e_stop="28529"/>
            <exon e_start="26583" e_stop="26203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.438" acc_prob="0.000" e_score="0.400"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.867"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.706"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.674"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.400">
            <gDNA_exon_boundary e_start="34183" e_stop="34104" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.438" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34103" i_stop="29677" i_length="4427"/>
          </intron>
          <exon e_serial="2" e_score="0.867">
            <gDNA_exon_boundary e_start="29676" e_stop="29662" e_length="15"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29661" i_stop="29023" i_length="639"/>
          </intron>
          <exon e_serial="3" e_score="0.706">
            <gDNA_exon_boundary e_start="29022" e_stop="28989" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28988" i_stop="28575" i_length="414"/>
          </intron>
          <exon e_serial="4" e_score="0.674">
            <gDNA_exon_boundary e_start="28574" e_stop="28529" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28528" i_stop="26584" i_length="1945"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="26583" e_stop="26203" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34183" stop="34104"/>
              <exon start="29676" stop="29662"/>
              <exon start="29022" stop="28989"/>
              <exon start="28574" stop="28529"/>
              <exon start="26583" stop="26203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554989" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGAT : TTTTTTTTTTCATTT : TATTTTTTTGCCATATATTTTGTTTGTTTTTTTA : TTTTCTATTAGTTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTG : AACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  S  S  L  I :   F  F  F  H  F :   I  F  L  P  Y  I  L  F  V  F  L  :  F  S  I  S  L  F  C  I  Y  S  F  F  L  E  F   : E  P  Q  Q  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  T  P  A  *   : F  F  F  F  I   : L  F  F  C  H  I  F  C  L  F  F  Y :   F  L  L  V  C  F  V  F  I  V  F  F  *  N  L  :  N  P  N  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  Q  P  D  :  F  F  F  S  F  :  Y  F  F  A  I  Y  F  V  C  F  F   : I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  * :   T  P  T  T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34183" stop="34104"/>
                    <exon start="29676" stop="29662"/>
                    <exon start="29022" stop="28989"/>
                    <exon start="28574" stop="28529"/>
                    <exon start="26583" stop="26519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFDSSLIFFFHFIFLPYILFVFLFSISLFCIYSFFLEFEPQQLKESLFKFSNTRNYKRT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28534" stop="28529"/>
                    <exon start="26583" stop="26389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLNPNNSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="34185" e_stop="34104"/>
            <exon e_start="29679" e_stop="29659"/>
            <exon e_start="29022" e_stop="28989"/>
            <exon e_start="28563" e_stop="28529"/>
            <exon e_start="26583" e_stop="26203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.438" acc_prob="0.000" e_score="0.467"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.762"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.706"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.686"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.467">
            <gDNA_exon_boundary e_start="34185" e_stop="34104" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.438" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34103" i_stop="29680" i_length="4424"/>
          </intron>
          <exon e_serial="2" e_score="0.762">
            <gDNA_exon_boundary e_start="29679" e_stop="29659" e_length="21"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29658" i_stop="29023" i_length="636"/>
          </intron>
          <exon e_serial="3" e_score="0.706">
            <gDNA_exon_boundary e_start="29022" e_stop="28989" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28988" i_stop="28564" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="0.686">
            <gDNA_exon_boundary e_start="28563" e_stop="28529" e_length="35"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28528" i_stop="26584" i_length="1945"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="26583" e_stop="26203" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34185" stop="34104"/>
              <exon start="29679" stop="29659"/>
              <exon start="29022" stop="28989"/>
              <exon start="28563" stop="28529"/>
              <exon start="26583" stop="26203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555084" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGAT : TACTTTTTTTTTTCATTTGTT : TATTTTTTTGCCATATATTTTGTTTGTTTTTTTA : TTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTG : AACCCCAACAACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGG</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  T  P  A  *   : L  L  F  F  F  I  C   : L  F  F  C  H  I  F  C  L  F  F  Y :   L  F  C  I  Y  S  F  F  L  E  F   : E  P  Q  Q  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  Q  P  D  :  Y  F  F  F  S  F  V  :  Y  F  F  A  I  Y  F  V  C  F  F   : I  C  F  V  F  I  V  F  F  *  N  L  :  N  P  N  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  S  S  L  I :   T  F  F  F  H  L  F :   I  F  L  P  Y  I  L  F  V  F  L  :  F  V  L  Y  L  *  F  F  F  R  I  * :   T  P  T  T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28534" stop="28529"/>
                    <exon start="26583" stop="26389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLNPNNSKKVYLNSQIPEITNAHKKKKCQTSQSEAKQFKTKSGKNTCSFFLISPNTSLAYALKSHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="34216" e_stop="34104"/>
            <exon e_start="33809" e_stop="33779"/>
            <exon e_start="32992" e_stop="32944"/>
            <exon e_start="32825" e_stop="32812"/>
            <exon e_start="32624" e_stop="32602"/>
            <exon e_start="32402" e_stop="32369"/>
            <exon e_start="31019" e_stop="30994"/>
            <exon e_start="29379" e_stop="29353"/>
            <exon e_start="28579" e_stop="28529"/>
            <exon e_start="26574" e_stop="26193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.438" acc_prob="0.000" e_score="0.533"/>
          <exon-intron don_prob="0.642" acc_prob="0.000" e_score="0.581"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.551"/>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="0.786"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.565"/>
          <exon-intron don_prob="0.039" acc_prob="0.536" e_score="0.441"/>
          <exon-intron don_prob="0.228" acc_prob="0.941" e_score="0.538"/>
          <exon-intron don_prob="0.754" acc_prob="0.000" e_score="0.370"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.533">
            <gDNA_exon_boundary e_start="34216" e_stop="34104" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.438" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34103" i_stop="33810" i_length="294"/>
          </intron>
          <exon e_serial="2" e_score="0.581">
            <gDNA_exon_boundary e_start="33809" e_stop="33779" e_length="31"/>
          </exon>
          <intron i_serial="2" don_prob="0.642" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33778" i_stop="32993" i_length="786"/>
          </intron>
          <exon e_serial="3" e_score="0.551">
            <gDNA_exon_boundary e_start="32992" e_stop="32944" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32943" i_stop="32826" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="0.786">
            <gDNA_exon_boundary e_start="32825" e_stop="32812" e_length="14"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32811" i_stop="32625" i_length="187"/>
          </intron>
          <exon e_serial="5" e_score="0.565">
            <gDNA_exon_boundary e_start="32624" e_stop="32602" e_length="23"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32601" i_stop="32403" i_length="199"/>
          </intron>
          <exon e_serial="6" e_score="0.441">
            <gDNA_exon_boundary e_start="32402" e_stop="32369" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.039" acc_prob="0.536">
            <gDNA_intron_boundary i_start="32368" i_stop="31020" i_length="1349"/>
          </intron>
          <exon e_serial="7" e_score="0.538">
            <gDNA_exon_boundary e_start="31019" e_stop="30994" e_length="26"/>
          </exon>
          <intron i_serial="7" don_prob="0.228" acc_prob="0.941">
            <gDNA_intron_boundary i_start="30993" i_stop="29380" i_length="1614"/>
          </intron>
          <exon e_serial="8" e_score="0.370">
            <gDNA_exon_boundary e_start="29379" e_stop="29353" e_length="27"/>
          </exon>
          <intron i_serial="8" don_prob="0.754" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29352" i_stop="28580" i_length="773"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="28579" e_stop="28529" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28528" i_stop="26575" i_length="1954"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="26574" e_stop="26193" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34216" stop="34104"/>
              <exon start="33809" stop="33779"/>
              <exon start="32992" stop="32944"/>
              <exon start="32825" stop="32812"/>
              <exon start="32624" stop="32602"/>
              <exon start="32402" stop="32369"/>
              <exon start="31019" stop="30994"/>
              <exon start="29379" stop="29353"/>
              <exon start="28579" stop="28529"/>
              <exon start="26574" stop="26193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554017" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTCCAGCCTGAT : TGATGAAGGAGATACTTCAGAGTTTACCAGT : TTTTGAGCTTTGAACATGTGGCTGTTAAATTGCTTAGATTTCTTGCTTG : AGTTTTTGGATTTT : GATCTTCCATCTAGTGGAACTGA : TATCCTTCTCATAATTTTCAGCAGCCTCCACCCG : AGGAATGTATATTGGCTTCACCCAGG : GCAAAATGAAAACAGGGCCCTAGTCTT : AACAATTTTCTATTAGTTTGTTTTGTATTTATAGTTTTTTTTTAGAATTTG : AACTCAAAGAAAGTTTATTTAAATTCTCAAATACCAGAAATTACAAACGCACATAAAAAAAAAAAATGTCAAACTTCACAAAGTGAAGCGAAACAATTCAAAACAAAATCAGGTAAAAATACATGCTCTTTTTTCTTAATTAGTCCCAACACTTCTCTAGCATACGCACTAAAATCCCACAAGTAGAAATTGGAGAGAATAGAGTGTACGCAGATGTTAACATCCATCGGGAACCTTAATTTTACATTGCTTAGGCAGATTCATTGCAGCTTCAGGACTGATTCCAAATTTCCCCAACTCAGATTTCTGGTTGCACATACACTGTAAATCAGCCTTGCGTAGCACTGCGCAACAATCCGGCGTCGGTTTCGGAGGTCTCTTC</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  D  S  S  L  I :   D  E  G  D  T  S  E  F  T  S  :  F  *  A  L  N  M  W  L  L  N  C  L  D  F  L  L   : E  F  L  D  F  :  D  L  P  S  S  G  T  D :   I  L  L  I  I  F  S  S  L  H  P  :  R  N  V  Y  W  L  H  P  G :   Q  N  E  N  R  A  L  V  L :   T  I  F  Y  *  F  V  L  Y  L  *  F  F  F  R  I  * :   T  Q  R  K  F  I  *  I  L  K  Y  Q  K  L  Q  T  H  I  K  K  K  N  V  K  L  H  K  V  K  R  N  N  S  K  Q  N  Q  V  K  I  H  A  L  F  S  *  L  V  P  T  L  L  *  H  T  H  *  N  P  T  S  R  N  W  R  E  *  S  V  R  R  C  *  H  P  S  G  T  L  I  L  H  C  L  G  R  F  I  A  A  S  G  L  I  P  N  F  P  N  S  D  F  W  L  H  I  H  C  K  S  A  L  R  S  T  A  Q  Q  S  G  V  G  F  G  G  L  F </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  T  P  A  *   : L  M  K  E  I  L  Q  S  L  P  V :   F  E  L  *  T  C  G  C  *  I  A  *  I  S  C  L  :  S  F  W  I  L :   I  F  H  L  V  E  L   : I  S  F  S  *  F  S  A  A  S  T  R :   G  M  Y  I  G  F  T  Q   : G  K  M  K  T  G  P  *  S   : *  Q  F  S  I  S  L  F  C  I  Y  S  F  F  L  E  F   : E  L  K  E  S  L  F  K  F  S  N  T  R  N  Y  K  R  T  *  K  K  K  M  S  N  F  T  K  *  S  E  T  I  Q  N  K  I  R  *  K  Y  M  L  F  F  L  N  *  S  Q  H  F  S  S  I  R  T  K  I  P  Q  V  E  I  G  E  N  R  V  Y  A  D  V  N  I  H  R  E  P  *  F  Y  I  A  *  A  D  S  L  Q  L  Q  D  *  F  Q  I  S  P  T  Q  I  S  G  C  T  Y  T  V  N  Q  P  C  V  A  L  R  N  N  P  A  S  V  S  E  V  S   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  L  Q  P  D  :  *  *  R  R  Y  F  R  V  Y  Q   : F  L  S  F  E  H  V  A  V  K  L  L  R  F  L  A  * :   V  F  G  F   : *  S  S  I  *  W  N  *  :  Y  P  S  H  N  F  Q  Q  P  P  P   : E  E  C  I  L  A  S  P  R  :  A  K  *  K  Q  G  P  S  L  :  N  N  F  L  L  V  C  F  V  F  I  V  F  F  *  N  L  :  N  S  K  K  V  Y  L  N  S  Q  I  P  E  I  T  N  A  H  K  K  K  K  C  Q  T  S  Q  S  E  A  K  Q  F  K  T  K  S  G  K  N  T  C  S  F  F  L  I  S  P  N  T  S  L  A  Y  A  L  K  S  H  K  *  K  L  E  R  I  E  C  T  Q  M  L  T  S  I  G  N  L  N  F  T  L  L  R  Q  I  H  C  S  F  R  T  D  S  K  F  P  Q  L  R  F  L  V  A  H  T  L  *  I  S  L  A  *  H  C  A  T  I  R  R  R  F  R  R  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0061J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="38791" PGL_stop="40279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38791" e_stop="38951"/>
            <exon e_start="39399" e_stop="39818"/>
            <exon e_start="40149" e_stop="40279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38791" e_stop="38951" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38952" i_stop="39398" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39399" e_stop="39818" e_length="420"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39819" i_stop="40148" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40149" e_stop="40279" e_length="131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38791" stop="38951"/>
              <exon start="39399" stop="39818"/>
              <exon start="40149" stop="40279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38791" stop="38951"/>
              <exon start="39399" stop="39816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTTGTTCACTAGCAAAACAATAGAGACAAATTAATATGGCACCTTTAGGAGACAATAATAACAATAATGTTGTTGTTTCAAACTTGAAACTTGAAAGAATGCTTAGTATGAAGGGAGGCAAAGGAGAAGCTAGTTATGTCAATAACTCTCAAGCTCAG : GGGCAACATGCACGATCAATGCTACACTTATTGAAAGATACCCTCGACGGAGTTCAGCTAAACTCGCCGGAGATTCCATTCGTAATCGCCGATTTAGGATGTTCCTGCGGTGGCAACACGATTTTCATTATCGACGTAATCGTCGAACACATGAGCAAGCGTTACGAAGCCACCGGACAAGAGCCGCCGGAATTTTCAGCTTTCTTCTCCGATCTACCGTCGAACGATTTCAACACTCTGTTTCAATTGCTACCGCCTTTAGCTAATAATGGCTGTGGAAGTATGGAAGAATGCTTAGCTTCTAATAGCCACCGCTCTTATTTCGCCGCCGGAGTTCCTGGTTCCTTTTACCGGCGTCTTTTCCCGGCCAGATCTATCGATGTTTTCTATTCCGCATTTTCTCTGCATTGGCTCTCTCAG : GTGCCGGAGATAGTGTTGGATAAGAGATCACCAGCATATAACAAAGGAAAAATATACATACATGGAGCAAATGAGAGCACAGCAAATGCATACAGAAAGCAATTTCAGACAGATTTGGCTTATTTTTTGGG</gDNA_template>
            <first_frame> L  F  V  H  *  Q  N  N  R  D  K  L  I  W  H  L  *  E  T  I  I  T  I  M  L  L  F  Q  T  *  N  L  K  E  C  L  V  *  R  E  A  K  E  K  L  V  M  S  I  T  L  K  L  R :   G  N  M  H  D  Q  C  Y  T  Y  *  K  I  P  S  T  E  F  S  *  T  R  R  R  F  H  S  *  S  P  I  *  D  V  P  A  V  A  T  R  F  S  L  S  T  *  S  S  N  T  *  A  S  V  T  K  P  P  D  K  S  R  R  N  F  Q  L  S  S  P  I  Y  R  R  T  I  S  T  L  C  F  N  C  Y  R  L  *  L  I  M  A  V  E  V  W  K  N  A  *  L  L  I  A  T  A  L  I  S  P  P  E  F  L  V  P  F  T  G  V  F  S  R  P  D  L  S  M  F  S  I  P  H  F  L  C  I  G  S  L  R :   C  R  R  *  C  W  I  R  D  H  Q  H  I  T  K  E  K  Y  T  Y  M  E  Q  M  R  A  Q  Q  M  H  T  E  S  N  F  R  Q  I  W  L  I  F  W  </first_frame>
            <second_frame>  S  L  F  T  S  K  T  I  E  T  N  *  Y  G  T  F  R  R  Q  *  *  Q  *  C  C  C  F  K  L  E  T  *  K  N  A  *  Y  E  G  R  Q  R  R  S  *  L  C  Q  *  L  S  S  S   : G  A  T  C  T  I  N  A  T  L  I  E  R  Y  P  R  R  S  S  A  K  L  A  G  D  S  I  R  N  R  R  F  R  M  F  L  R  W  Q  H  D  F  H  Y  R  R  N  R  R  T  H  E  Q  A  L  R  S  H  R  T  R  A  A  G  I  F  S  F  L  L  R  S  T  V  E  R  F  Q  H  S  V  S  I  A  T  A  F  S  *  *  W  L  W  K  Y  G  R  M  L  S  F  *  *  P  P  L  L  F  R  R  R  S  S  W  F  L  L  P  A  S  F  P  G  Q  I  Y  R  C  F  L  F  R  I  F  S  A  L  A  L  S   : G  A  G  D  S  V  G  *  E  I  T  S  I  *  Q  R  K  N  I  H  T  W  S  K  *  E  H  S  K  C  I  Q  K  A  I  S  D  R  F  G  L  F  F  G </second_frame>
            <third_frame>   L  C  S  L  A  K  Q  *  R  Q  I  N  M  A  P  L  G  D  N  N  N  N  N  V  V  V  S  N  L  K  L  E  R  M  L  S  M  K  G  G  K  G  E  A  S  Y  V  N  N  S  Q  A  Q  :  G  Q  H  A  R  S  M  L  H  L  L  K  D  T  L  D  G  V  Q  L  N  S  P  E  I  P  F  V  I  A  D  L  G  C  S  C  G  G  N  T  I  F  I  I  D  V  I  V  E  H  M  S  K  R  Y  E  A  T  G  Q  E  P  P  E  F  S  A  F  F  S  D  L  P  S  N  D  F  N  T  L  F  Q  L  L  P  P  L  A  N  N  G  C  G  S  M  E  E  C  L  A  S  N  S  H  R  S  Y  F  A  A  G  V  P  G  S  F  Y  R  R  L  F  P  A  R  S  I  D  V  F  Y  S  A  F  S  L  H  W  L  S  Q  :  V  P  E  I  V  L  D  K  R  S  P  A  Y  N  K  G  K  I  Y  I  H  G  A  N  E  S  T  A  N  A  Y  R  K  Q  F  Q  T  D  L  A  Y  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38817" stop="38951"/>
                    <exon start="39399" stop="39818"/>
                    <exon start="40149" stop="40277"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQINMAPLGDNNNNNVVVSNLKLERMLSMKGGKGEASYVNNSQAQGQHARSMLHLLKDTLDGVQLNSPEIPFVIADLGCSCGGNTIFIIDVIVEHMSKRYEATGQEPPEFSAFFSDLPSNDFNTLFQLLPPLANNGCGSMEECLASNSHRSYFAAGVPGSFYRRLFPARSIDVFYSAFSLHWLSQVPEIVLDKRSPAYNKGKIYIHGANESTANAYRKQFQTDLAYFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="40738" PGL_stop="43026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40738" e_stop="41385"/>
            <exon e_start="42997" e_stop="43026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.733"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40738" e_stop="41385" e_length="648"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41386" i_stop="42996" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="0.733">
            <gDNA_exon_boundary e_start="42997" e_stop="43026" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40738" stop="41316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40738" stop="41110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40968" stop="41250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40968" stop="41250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40996" stop="41385"/>
              <exon start="42997" stop="43026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222068" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAAGGGACAAGTTCAATATTCCAGTGTATGCACCAAGCATTCAAGATTTCAAAGAAGTGGTAGAAGCAAATGACTCATTCAAAATTAACAATCTTCAAGTTTTTAGGGGAGGTAGCCCTCTTGTGGTTAGCCATCCAGACGACGCGGCTGAAATAGGACGAGCACTGGCTAACAGCTGTAGAAGTGTTAGTGGGGTGCTCGTCGATGCCCACATTGGTGAACAGCTCAGTGATGAGCTGTTCACCAGAGTGGAGGAACGAGCCACGTGTCATGCAAAAGAGCTTCTTCAGAATCTTCAGTTTTTTCATATTGTTGCTTCACTTTCTCTTGTGTAGAGATTTGAATGTTTAATTAGTAGAATTTTCAAAAGAGAGACAAAGAGGCTCTAGTGAAAGTCTATATGTCTCTCATGTATTAGAATGAAATATTGTTAGAGAAATTAAGACTGACTTGTAGTTTGGTTTGGTTGATAATATATGATCGGTAAAAATTAAATGTTTAAATTTGTGATTTAAACAAACCTTAGACATTTGTCATTTGTTTAATTTTTCAATCTATAAAAATCTCGCGTTGTTAATAATTTTGTTTCATATTTATTCCTACCTTAACGATTTTCTAGCTTGAATCTGACATTTGGTCCAAAAT : AAAGAATGAAATAATAAATAAAAAACAAAA</gDNA_template>
            <first_frame> R  K  G  T  S  S  I  F  Q  C  M  H  Q  A  F  K  I  S  K  K  W  *  K  Q  M  T  H  S  K  L  T  I  F  K  F  L  G  E  V  A  L  L  W  L  A  I  Q  T  T  R  L  K  *  D  E  H  W  L  T  A  V  E  V  L  V  G  C  S  S  M  P  T  L  V  N  S  S  V  M  S  C  S  P  E  W  R  N  E  P  R  V  M  Q  K  S  F  F  R  I  F  S  F  F  I  L  L  L  H  F  L  L  C  R  D  L  N  V  *  L  V  E  F  S  K  E  R  Q  R  G  S  S  E  S  L  Y  V  S  H  V  L  E  *  N  I  V  R  E  I  K  T  D  L  *  F  G  L  V  D  N  I  *  S  V  K  I  K  C  L  N  L  *  F  K  Q  T  L  D  I  C  H  L  F  N  F  S  I  Y  K  N  L  A  L  L  I  I  L  F  H  I  Y  S  Y  L  N  D  F  L  A  *  I  *  H  L  V  Q  N  :  K  E  *  N  N  K  *  K  T  K </first_frame>
            <second_frame>  E  K  G  Q  V  Q  Y  S  S  V  C  T  K  H  S  R  F  Q  R  S  G  R  S  K  *  L  I  Q  N  *  Q  S  S  S  F  *  G  R  *  P  S  C  G  *  P  S  R  R  R  G  *  N  R  T  S  T  G  *  Q  L  *  K  C  *  W  G  A  R  R  C  P  H  W  *  T  A  Q  *  *  A  V  H  Q  S  G  G  T  S  H  V  S  C  K  R  A  S  S  E  S  S  V  F  S  Y  C  C  F  T  F  S  C  V  E  I  *  M  F  N  *  *  N  F  Q  K  R  D  K  E  A  L  V  K  V  Y  M  S  L  M  Y  *  N  E  I  L  L  E  K  L  R  L  T  C  S  L  V  W  L  I  I  Y  D  R  *  K  L  N  V  *  I  C  D  L  N  K  P  *  T  F  V  I  C  L  I  F  Q  S  I  K  I  S  R  C  *  *  F  C  F  I  F  I  P  T  L  T  I  F  *  L  E  S  D  I  W  S  K  I :   K  N  E  I  I  N  K  K  Q   </second_frame>
            <third_frame>   K  R  D  K  F  N  I  P  V  Y  A  P  S  I  Q  D  F  K  E  V  V  E  A  N  D  S  F  K  I  N  N  L  Q  V  F  R  G  G  S  P  L  V  V  S  H  P  D  D  A  A  E  I  G  R  A  L  A  N  S  C  R  S  V  S  G  V  L  V  D  A  H  I  G  E  Q  L  S  D  E  L  F  T  R  V  E  E  R  A  T  C  H  A  K  E  L  L  Q  N  L  Q  F  F  H  I  V  A  S  L  S  L  V  *  R  F  E  C  L  I  S  R  I  F  K  R  E  T  K  R  L  *  *  K  S  I  C  L  S  C  I  R  M  K  Y  C  *  R  N  *  D  *  L  V  V  W  F  G  *  *  Y  M  I  G  K  N  *  M  F  K  F  V  I  *  T  N  L  R  H  L  S  F  V  *  F  F  N  L  *  K  S  R  V  V  N  N  F  V  S  Y  L  F  L  P  *  R  F  S  S  L  N  L  T  F  G  P  K   : *  R  M  K  *  *  I  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40740" stop="41075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRDKFNIPVYAPSIQDFKEVVEANDSFKINNLQVFRGGSPLVVSHPDDAAEIGRALANSCRSVSGVLVDAHIGEQLSDELFTRVEERATCHAKELLQNLQFFHIVASLSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="47651" PGL_stop="46451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47651" e_stop="46451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="47651" e_stop="46451" e_length="1201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47651" stop="46466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47622" stop="46871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47617" stop="46856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47617" stop="47061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47615" stop="47093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47614" stop="46805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47604" stop="46725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47604" stop="46741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47604" stop="46745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47603" stop="47076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47602" stop="46984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47602" stop="46993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47602" stop="47135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47597" stop="46782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47590" stop="47159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47584" stop="47024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47538" stop="46700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47499" stop="46664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47452" stop="46740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47452" stop="46941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47447" stop="46740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47236" stop="46467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47236" stop="46504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47232" stop="46542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47178" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578367" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46928" stop="46455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46820" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216375" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46650" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46650" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46650" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225356" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46646" stop="46451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219814" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAGTTATAATATAATATTGTTCATAAACAAAAAAAAAAAAGAAGAGAGAATATGAACTTGTCTCTTCTTCTTGTAGTTATTTTTCTTTGCTTTGCTTCTCCTTCACTATCAGTAAGATGCAATCCGAAAGACAAAAAAGTCCTTCTACAAATAAAGAAAGACTTAGGCAATCCTTACCATTTAGCTTCATGGGATCCAAACACAGATTGCTGTTACTGGTACGTCGTAAAATGTGACCGGAAAACCAACCGGATAAATGCTCTCACCGTCTTCCAAGCCAATATCTCCGGCCAAATTCCGGCAGCCGTCGGAGACCTTCCATATCTCGAAACATTGGAATTTCATCATGTTACTAATCTCACCGGAACAATTCCACCTGCAATTGCGAAGCTCACAAATCTCAAAATGTTAAGGCTCAGCTTCACTAACCTTACAGGTCCGATCCCTGAATTCCTTAGTCAGCTGAAGAATTTGACGTTGCTCGAGTTGAATTACAATCAATTTACCGGAACAATCCCTTCTTCCCTCTCTCAGCTTCCGAATTTGCTAGCGATGTACTTAGATCGTAACAAACTCACCGGAACAATACCGGAATCGTTTGGGAGATTTAAAGGACCAAATATACCAGATCTCTACCTTTCACACAACAGCTTGACCGGACATGTGCCGGCATCTTTAGGTGATTTGAATTTTTCCACGCTTGATTTCTCCAGGAATAAGCTTGAAGGAGATGTTTCGTTTTTGTTCGGGAAGAATAAGACGAGTCAGGTAATTGATTTATCGAGGAATTTATTGGAGTTTGATATTTCGAAATCGGAGTTTGCTGAGAGCTTGATATCATTGGATTTGAATCATAATCGAATTTTTGGTAGCTTACCACCAGGATTGAAAGATGTACCATTGCAGTTTTTCAATGTGAGTTATAATAGACTTTGTGGACAGATTCCACAAGGTGGAACGTTGCAGAGCTTTGATATTTACTCTTATTTGCATAACAAATGCCTTTGTGGCTCTCCCTTGCCGAAATGTAAGTAGGTATGGAGGTCGAGGATTTAAATAATCGAGAATTGTAGTAGAGGCAACTAGCCTTCTCTAGTCGTTCCTAATCATATTTAGTGCTCTTTTCGCTTTTTATAATCCGTATGCGAGGATCTAATGAATATAGTCTCTCTATCAATAAACTTATGAAATTTTACGAA</gDNA_template>
            <first_frame> L  S  Y  N  I  I  L  F  I  N  K  K  K  K  E  E  R  I  *  T  C  L  F  F  L  *  L  F  F  F  A  L  L  L  L  H  Y  Q  *  D  A  I  R  K  T  K  K  S  F  Y  K  *  R  K  T  *  A  I  L  T  I  *  L  H  G  I  Q  T  Q  I  A  V  T  G  T  S  *  N  V  T  G  K  P  T  G  *  M  L  S  P  S  S  K  P  I  S  P  A  K  F  R  Q  P  S  E  T  F  H  I  S  K  H  W  N  F  I  M  L  L  I  S  P  E  Q  F  H  L  Q  L  R  S  S  Q  I  S  K  C  *  G  S  A  S  L  T  L  Q  V  R  S  L  N  S  L  V  S  *  R  I  *  R  C  S  S  *  I  T  I  N  L  P  E  Q  S  L  L  P  S  L  S  F  R  I  C  *  R  C  T  *  I  V  T  N  S  P  E  Q  Y  R  N  R  L  G  D  L  K  D  Q  I  Y  Q  I  S  T  F  H  T  T  A  *  P  D  M  C  R  H  L  *  V  I  *  I  F  P  R  L  I  S  P  G  I  S  L  K  E  M  F  R  F  C  S  G  R  I  R  R  V  R  *  L  I  Y  R  G  I  Y  W  S  L  I  F  R  N  R  S  L  L  R  A  *  Y  H  W  I  *  I  I  I  E  F  L  V  A  Y  H  Q  D  *  K  M  Y  H  C  S  F  S  M  *  V  I  I  D  F  V  D  R  F  H  K  V  E  R  C  R  A  L  I  F  T  L  I  C  I  T  N  A  F  V  A  L  P  C  R  N  V  S  R  Y  G  G  R  G  F  K  *  S  R  I  V  V  E  A  T  S  L  L  *  S  F  L  I  I  F  S  A  L  F  A  F  Y  N  P  Y  A  R  I  *  *  I  *  S  L  Y  Q  *  T  Y  E  I  L  R  </first_frame>
            <second_frame>  *  V  I  I  *  Y  C  S  *  T  K  K  K  K  K  R  E  Y  E  L  V  S  S  S  C  S  Y  F  S  L  L  C  F  S  F  T  I  S  K  M  Q  S  E  R  Q  K  S  P  S  T  N  K  E  R  L  R  Q  S  L  P  F  S  F  M  G  S  K  H  R  L  L  L  L  V  R  R  K  M  *  P  E  N  Q  P  D  K  C  S  H  R  L  P  S  Q  Y  L  R  P  N  S  G  S  R  R  R  P  S  I  S  R  N  I  G  I  S  S  C  Y  *  S  H  R  N  N  S  T  C  N  C  E  A  H  K  S  Q  N  V  K  A  Q  L  H  *  P  Y  R  S  D  P  *  I  P  *  S  A  E  E  F  D  V  A  R  V  E  L  Q  S  I  Y  R  N  N  P  F  F  P  L  S  A  S  E  F  A  S  D  V  L  R  S  *  Q  T  H  R  N  N  T  G  I  V  W  E  I  *  R  T  K  Y  T  R  S  L  P  F  T  Q  Q  L  D  R  T  C  A  G  I  F  R  *  F  E  F  F  H  A  *  F  L  Q  E  *  A  *  R  R  C  F  V  F  V  R  E  E  *  D  E  S  G  N  *  F  I  E  E  F  I  G  V  *  Y  F  E  I  G  V  C  *  E  L  D  I  I  G  F  E  S  *  S  N  F  W  *  L  T  T  R  I  E  R  C  T  I  A  V  F  Q  C  E  L  *  *  T  L  W  T  D  S  T  R  W  N  V  A  E  L  *  Y  L  L  L  F  A  *  Q  M  P  L  W  L  S  L  A  E  M  *  V  G  M  E  V  E  D  L  N  N  R  E  L  *  *  R  Q  L  A  F  S  S  R  S  *  S  Y  L  V  L  F  S  L  F  I  I  R  M  R  G  S  N  E  Y  S  L  S  I  N  K  L  M  K  F  Y  E </second_frame>
            <third_frame>   K  L  *  Y  N  I  V  H  K  Q  K  K  K  R  R  E  N  M  N  L  S  L  L  L  V  V  I  F  L  C  F  A  S  P  S  L  S  V  R  C  N  P  K  D  K  K  V  L  L  Q  I  K  K  D  L  G  N  P  Y  H  L  A  S  W  D  P  N  T  D  C  C  Y  W  Y  V  V  K  C  D  R  K  T  N  R  I  N  A  L  T  V  F  Q  A  N  I  S  G  Q  I  P  A  A  V  G  D  L  P  Y  L  E  T  L  E  F  H  H  V  T  N  L  T  G  T  I  P  P  A  I  A  K  L  T  N  L  K  M  L  R  L  S  F  T  N  L  T  G  P  I  P  E  F  L  S  Q  L  K  N  L  T  L  L  E  L  N  Y  N  Q  F  T  G  T  I  P  S  S  L  S  Q  L  P  N  L  L  A  M  Y  L  D  R  N  K  L  T  G  T  I  P  E  S  F  G  R  F  K  G  P  N  I  P  D  L  Y  L  S  H  N  S  L  T  G  H  V  P  A  S  L  G  D  L  N  F  S  T  L  D  F  S  R  N  K  L  E  G  D  V  S  F  L  F  G  K  N  K  T  S  Q  V  I  D  L  S  R  N  L  L  E  F  D  I  S  K  S  E  F  A  E  S  L  I  S  L  D  L  N  H  N  R  I  F  G  S  L  P  P  G  L  K  D  V  P  L  Q  F  F  N  V  S  Y  N  R  L  C  G  Q  I  P  Q  G  G  T  L  Q  S  F  D  I  Y  S  Y  L  H  N  K  C  L  C  G  S  P  L  P  K  C  K  *  V  W  R  S  R  I  *  I  I  E  N  C  S  R  G  N  *  P  S  L  V  V  P  N  H  I  *  C  S  F  R  F  L  *  S  V  C  E  D  L  M  N  I  V  S  L  S  I  N  L  *  N  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47640" stop="46615"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNIVHKQKKKRRENMNLSLLLVVIFLCFASPSLSVRCNPKDKKVLLQIKKDLGNPYHLASWDPNTDCCYWYVVKCDRKTNRINALTVFQANISGQIPAAVGDLPYLETLEFHHVTNLTGTIPPAIAKLTNLKMLRLSFTNLTGPIPEFLSQLKNLTLLELNYNQFTGTIPSSLSQLPNLLAMYLDRNKLTGTIPESFGRFKGPNIPDLYLSHNSLTGHVPASLGDLNFSTLDFSRNKLEGDVSFLFGKNKTSQVIDLSRNLLEFDISKSEFAESLISLDLNHNRIFGSLPPGLKDVPLQFFNVSYNRLCGQIPQGGTLQSFDIYSYLHNKCLCGSPLPKCK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="58670" PGL_stop="60346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58670" e_stop="59006"/>
            <exon e_start="60053" e_stop="60346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="58670" e_stop="59006" e_length="337"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59007" i_stop="60052" i_length="1046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60053" e_stop="60346" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58670" stop="59006"/>
              <exon start="60053" stop="60251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58706" stop="59006"/>
              <exon start="60053" stop="60290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58710" stop="59006"/>
              <exon start="60053" stop="60115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58715" stop="59006"/>
              <exon start="60053" stop="60346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58717" stop="59006"/>
              <exon start="60053" stop="60289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58717" stop="59006"/>
              <exon start="60053" stop="60261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58719" stop="59006"/>
              <exon start="60053" stop="60230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58719" stop="59006"/>
              <exon start="60053" stop="60185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58721" stop="59006"/>
              <exon start="60053" stop="60346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58721" stop="59006"/>
              <exon start="60053" stop="60346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58723" stop="59006"/>
              <exon start="60053" stop="60313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58728" stop="59006"/>
              <exon start="60053" stop="60090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58731" stop="59006"/>
              <exon start="60053" stop="60312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58753" stop="59006"/>
              <exon start="60053" stop="60257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58894" stop="59006"/>
              <exon start="60053" stop="60346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTGCCAGCCTGAAAATAGCCCACACCCCTCAAAGGCAAGGCACAAACACTCACACACTTTCTCTCTCTATCTATCTGCTCTCAAAGTCTCCTCAACTTGTCAATCATCACACTTTTTCTTCACACAAATCAGCTGAATCTCTCCATATTCTCCTCCACCTCCGTCACTAACGGAAAAAAATTTACGCCGGAAAACGATTCTCCGGCTGAGCTCGCCGGAAATGAGGAAAATGCGTTCTGTTTTATGTCTCCTGGTACTTTGTTGCTCAGTTGCATTTGTTGCTGCTCAAAGATCTAACAATGTAACCTCTAAATGGAAAACACTGAGCG : GAGATGCACCAAAAGTCATAGCTCGTGGAGGATTTTCTGGGTTACTTCCTGATTCAAGCTTTAATGCCTACATGTTGGCACAAGCAATTAGCTCGGCTGATTGGGTTGCTTGGTGTGATGTTCAACTCACAAAAGACGGGGTTGGCATTTGTTTTCCTGATATCAAGCTTAACAATGCTTCTGACATCGATACTCTCTACCCAAACAGGAATAACAACTACTCGGTGAATGGAATTCCTCAGACAGGATGGTTTTCTATAGATTTCAGCATCAAGGATTTGGCACCTGTCAGCT</gDNA_template>
            <first_frame> K  N  I  C  Q  P  E  N  S  P  H  P  S  K  A  R  H  K  H  S  H  T  F  S  L  Y  L  S  A  L  K  V  S  S  T  C  Q  S  S  H  F  F  F  T  Q  I  S  *  I  S  P  Y  S  P  P  P  P  S  L  T  E  K  N  L  R  R  K  T  I  L  R  L  S  S  P  E  M  R  K  M  R  S  V  L  C  L  L  V  L  C  C  S  V  A  F  V  A  A  Q  R  S  N  N  V  T  S  K  W  K  T  L  S   : G  D  A  P  K  V  I  A  R  G  G  F  S  G  L  L  P  D  S  S  F  N  A  Y  M  L  A  Q  A  I  S  S  A  D  W  V  A  W  C  D  V  Q  L  T  K  D  G  V  G  I  C  F  P  D  I  K  L  N  N  A  S  D  I  D  T  L  Y  P  N  R  N  N  N  Y  S  V  N  G  I  P  Q  T  G  W  F  S  I  D  F  S  I  K  D  L  A  P  V  S  </first_frame>
            <second_frame>  K  I  F  A  S  L  K  I  A  H  T  P  Q  R  Q  G  T  N  T  H  T  L  S  L  S  I  Y  L  L  S  K  S  P  Q  L  V  N  H  H  T  F  S  S  H  K  S  A  E  S  L  H  I  L  L  H  L  R  H  *  R  K  K  I  Y  A  G  K  R  F  S  G  *  A  R  R  K  *  G  K  C  V  L  F  Y  V  S  W  Y  F  V  A  Q  L  H  L  L  L  L  K  D  L  T  M  *  P  L  N  G  K  H  *  A  :  E  M  H  Q  K  S  *  L  V  E  D  F  L  G  Y  F  L  I  Q  A  L  M  P  T  C  W  H  K  Q  L  A  R  L  I  G  L  L  G  V  M  F  N  S  Q  K  T  G  L  A  F  V  F  L  I  S  S  L  T  M  L  L  T  S  I  L  S  T  Q  T  G  I  T  T  T  R  *  M  E  F  L  R  Q  D  G  F  L  *  I  S  A  S  R  I  W  H  L  S  A </second_frame>
            <third_frame>   K  Y  L  P  A  *  K  *  P  T  P  L  K  G  K  A  Q  T  L  T  H  F  L  S  L  S  I  C  S  Q  S  L  L  N  L  S  I  I  T  L  F  L  H  T  N  Q  L  N  L  S  I  F  S  S  T  S  V  T  N  G  K  K  F  T  P  E  N  D  S  P  A  E  L  A  G  N  E  E  N  A  F  C  F  M  S  P  G  T  L  L  L  S  C  I  C  C  C  S  K  I  *  Q  C  N  L  *  M  E  N  T  E  R :   R  C  T  K  S  H  S  S  W  R  I  F  W  V  T  S  *  F  K  L  *  C  L  H  V  G  T  S  N  *  L  G  *  L  G  C  L  V  *  C  S  T  H  K  R  R  G  W  H  L  F  S  *  Y  Q  A  *  Q  C  F  *  H  R  Y  S  L  P  K  Q  E  *  Q  L  L  G  E  W  N  S  S  D  R  M  V  F  Y  R  F  Q  H  Q  G  F  G  T  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58814" stop="59006"/>
                    <exon start="60053" stop="60345"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISPYSPPPPSLTEKNLRRKTILRLSSPEMRKMRSVLCLLVLCCSVAFVAAQRSNNVTSKWKTLSGDAPKVIARGGFSGLLPDSSFNAYMLAQAISSADWVAWCDVQLTKDGVGICFPDIKLNNASDIDTLYPNRNNNYSVNGIPQTGWFSIDFSIKDLAPVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="62865" PGL_stop="65672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62865" e_stop="63020"/>
            <exon e_start="63697" e_stop="63854"/>
            <exon e_start="63940" e_stop="64036"/>
            <exon e_start="64442" e_stop="64533"/>
            <exon e_start="64957" e_stop="65671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.724" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62865" e_stop="63020" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.976">
            <gDNA_intron_boundary i_start="63021" i_stop="63696" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63697" e_stop="63854" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.970">
            <gDNA_intron_boundary i_start="63855" i_stop="63939" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63940" e_stop="64036" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64442" e_stop="64533" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.724">
            <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="64957" e_stop="65671" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62865" stop="63020"/>
              <exon start="63697" stop="63854"/>
              <exon start="63940" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64021" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64021" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64021" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64444" stop="64533"/>
              <exon start="64957" stop="65314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTGGAAGCACGCAACGAAACCTCCAATAAAGATGCCGTTTAGGAAGGTTGAAAACTGCAACCAAGTTGTCAAGATTGGGAAGCAGTTGAAGCTTTCCCTTGTAAATGTGGGAGGAAACGATTTTGTCCAAGGGAATAAGAAGCTTATACTTG : CTTTCCTGTGGCAGTTGATGAGGTTTAATATGCTTCAGCTTTTGAAGAACTTGAGATCGCGTTTCCGAGGGAAGGAGATTACTGATGCTGATATTCTCTCTTGGGCAAACAAAAAAGTCAAAAACACTGGAAGAACATCTAAAATGGAGAGTTTTAAG : GATAAGAGCCTTTCAAATGGATTGTTCTTTCTCGAGCTTCTCAGTGCTGTGGAGCCAAGGGTTGTTAATTGGAATCTTGTCACCAAGGGTGAAAGTG : ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG : GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTGAAGGGTCAAACTTGGAGTTGGCTACTACCGATGCACCATCTG</gDNA_template>
            <first_frame> L  I  G  S  T  Q  R  N  L  Q  *  R  C  R  L  G  R  L  K  T  A  T  K  L  S  R  L  G  S  S  *  S  F  P  L  *  M  W  E  E  T  I  L  S  K  G  I  R  S  L  Y  L  :  L  S  C  G  S  *  *  G  L  I  C  F  S  F  *  R  T  *  D  R  V  S  E  G  R  R  L  L  M  L  I  F  S  L  G  Q  T  K  K  S  K  T  L  E  E  H  L  K  W  R  V  L  R :   I  R  A  F  Q  M  D  C  S  F  S  S  F  S  V  L  W  S  Q  G  L  L  I  G  I  L  S  P  R  V  K  V  :  M  R  K  R  S  *  M  L  P  I  S  S  V  L  H  G  N  L  G  V  L  S  F  C  C  L  R  I  S  W  R :   L  T  K  R  *  S  S  L  S  L  P  A  S  C  T  G  A  F  S  R  Q  R  T  I  *  S  L  L  R  V  L  L  H  L  M  H  H  Q  Q  D  L  *  M  A  L  C  P  P  I  L  L  L  H  L  M  H  P  L  H  L  Q  L  V  E  H  H  Q  L  L  L  T  H  L  Q  H  H  L  *  T  E  M  R  K  A  H  L  L  L  K  C  Q  S  W  S  W  L  L  T  M  H  H  L  I  L  L  K  C  Q  S  R  S  W  L  L  M  M  H  H  L  M  P  L  K  F  Q  S  *  S  W  L  L  T  T  L  H  L  I  L  L  K  C  Q  K  W  S  *  L  L  R  T  H  H  L  I  L  L  K  Y  H  K  W  S  W  L  L  T  T  H  H  L  I  L  P  K  G  Q  N  W  S  W  L  L  T  T  H  H  L  I  L  L  K  C  *  I  F  F  F  F  F  F  F  F  F  F  L  L  L  K  G  Q  N  W  S  W  L  L  R  T  H  R  L  I  R  L  K  G  Q  T  W  S  W  L  L  P  M  H  H  L </first_frame>
            <second_frame>  *  L  E  A  R  N  E  T  S  N  K  D  A  V  *  E  G  *  K  L  Q  P  S  C  Q  D  W  E  A  V  E  A  F  P  C  K  C  G  R  K  R  F  C  P  R  E  *  E  A  Y  T  C :   F  P  V  A  V  D  E  V  *  Y  A  S  A  F  E  E  L  E  I  A  F  P  R  E  G  D  Y  *  C  *  Y  S  L  L  G  K  Q  K  S  Q  K  H  W  K  N  I  *  N  G  E  F  *   : G  *  E  P  F  K  W  I  V  L  S  R  A  S  Q  C  C  G  A  K  G  C  *  L  E  S  C  H  Q  G  *  K  * :   *  G  K  E  V  E  C  Y  L  Y  H  Q  C  C  T  E  T  W  V  F  Y  L  S  V  A  *  G  Y  H  G   : G  *  P  K  D  D  P  H  S  H  C  Q  H  H  V  L  E  P  S  A  D  S  G  R  Y  R  V  S  C  E  Y  C  C  I  *  C  I  T  S  K  I  Y  E  W  L  Y  V  P  L  Y  C  C  F  T  *  C  I  P  C  T  F  N  *  W  S  I  I  S  Y  S  *  R  I  S  S  T  I  C  K  R  R  *  G  K  P  T  Y  Y  *  S  V  K  V  G  V  G  C  *  L  C  T  I  *  Y  S  *  S  V  K  V  E  V  G  C  *  *  C  T  I  *  C  H  *  S  F  K  V  E  V  G  C  *  R  H  S  I  *  Y  Y  *  S  V  K  S  G  V  D  C  *  G  R  T  I  *  Y  Y  *  S  I  T  S  G  V  G  C  *  Q  R  T  I  *  Y  Y  R  R  V  K  I  G  V  G  C  *  Q  R  T  I  *  Y  Y  *  S  V  K  F  F  F  F  F  F  F  F  F  F  F  Y  Y  *  R  V  K  I  G  V  G  C  *  G  R  T  V  *  Y  D  *  R  V  K  L  G  V  G  Y  Y  R  C  T  I   </second_frame>
            <third_frame>   N  W  K  H  A  T  K  P  P  I  K  M  P  F  R  K  V  E  N  C  N  Q  V  V  K  I  G  K  Q  L  K  L  S  L  V  N  V  G  G  N  D  F  V  Q  G  N  K  K  L  I  L   : A  F  L  W  Q  L  M  R  F  N  M  L  Q  L  L  K  N  L  R  S  R  F  R  G  K  E  I  T  D  A  D  I  L  S  W  A  N  K  K  V  K  N  T  G  R  T  S  K  M  E  S  F  K  :  D  K  S  L  S  N  G  L  F  F  L  E  L  L  S  A  V  E  P  R  V  V  N  W  N  L  V  T  K  G  E  S   : D  E  E  K  K  L  N  A  T  Y  I  I  S  V  A  R  K  L  G  C  S  I  F  L  L  P  E  D  I  M  E  :  V  N  Q  K  M  I  L  T  L  T  A  S  I  M  Y  W  S  L  Q  Q  T  A  D  D  I  E  S  P  A  S  T  V  A  S  D  A  S  P  A  R  S  M  N  G  S  M  S  P  Y  T  A  A  S  P  D  A  S  P  A  P  S  I  S  G  A  S  S  A  T  P  D  A  S  P  A  P  S  V  N  G  D  E  E  S  P  L  I  T  E  V  S  K  L  E  L  V  A  D  Y  A  P  S  D  T  P  E  V  S  K  S  K  L  A  A  D  D  A  P  F  D  A  T  E  V  S  K  L  K  L  A  A  N  D  T  P  S  D  T  T  E  V  S  K  V  E  L  T  A  E  D  A  P  S  D  T  T  E  V  S  Q  V  E  L  A  A  D  N  A  P  S  D  T  T  E  G  S  K  L  E  L  A  A  D  N  A  P  S  D  T  T  E  V  L  N  F  F  F  F  F  F  F  F  F  F  F  T  T  E  G  S  K  L  E  L  A  A  E  D  A  P  S  D  T  T  E  G  S  N  L  E  L  A  T  T  D  A  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62867" stop="63020"/>
                    <exon start="63697" stop="63854"/>
                    <exon start="63940" stop="64036"/>
                    <exon start="64442" stop="64533"/>
                    <exon start="64957" stop="65670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWKHATKPPIKMPFRKVENCNQVVKIGKQLKLSLVNVGGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRSRFRGKEITDADILSWANKKVKNTGRTSKMESFKDKSLSNGLFFLELLSAVEPRVVNWNLVTKGESDEEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQTADDIESPASTVASDASPARSMNGSMSPYTAASPDASPAPSISGASSATPDASPAPSVNGDEESPLITEVSKLELVADYAPSDTPEVSKSKLAADDAPFDATEVSKLKLAANDTPSDTTEVSKVELTAEDAPSDTTEVSQVELAADNAPSDTTEGSKLELAADNAPSDTTEVLNFFFFFFFFFFFTTEGSKLELAAEDAPSDTTEGSNLELATTDAPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62865" e_stop="63020"/>
            <exon e_start="63697" e_stop="63854"/>
            <exon e_start="63940" e_stop="64036"/>
            <exon e_start="64442" e_stop="64533"/>
            <exon e_start="64957" e_stop="65531"/>
            <exon e_start="65582" e_stop="65629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.144" e_score="1.000"/>
          <exon-only e_score="0.854"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62865" e_stop="63020" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.976">
            <gDNA_intron_boundary i_start="63021" i_stop="63696" i_length="676"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63697" e_stop="63854" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.970">
            <gDNA_intron_boundary i_start="63855" i_stop="63939" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63940" e_stop="64036" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64037" i_stop="64441" i_length="405"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64442" e_stop="64533" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.724">
            <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64957" e_stop="65531" e_length="575"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.144">
            <gDNA_intron_boundary i_start="65532" i_stop="65581" i_length="50"/>
          </intron>
          <exon e_serial="6" e_score="0.854">
            <gDNA_exon_boundary e_start="65582" e_stop="65629" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62865" stop="63020"/>
              <exon start="63697" stop="63854"/>
              <exon start="63940" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64021" stop="64036"/>
              <exon start="64442" stop="64533"/>
              <exon start="64957" stop="65373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64444" stop="64533"/>
              <exon start="64957" stop="65314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65531"/>
              <exon start="65582" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65118" stop="65531"/>
              <exon start="65582" stop="65629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTGGAAGCACGCAACGAAACCTCCAATAAAGATGCCGTTTAGGAAGGTTGAAAACTGCAACCAAGTTGTCAAGATTGGGAAGCAGTTGAAGCTTTCCCTTGTAAATGTGGGAGGAAACGATTTTGTCCAAGGGAATAAGAAGCTTATACTTG : CTTTCCTGTGGCAGTTGATGAGGTTTAATATGCTTCAGCTTTTGAAGAACTTGAGATCGCGTTTCCGAGGGAAGGAGATTACTGATGCTGATATTCTCTCTTGGGCAAACAAAAAAGTCAAAAACACTGGAAGAACATCTAAAATGGAGAGTTTTAAG : GATAAGAGCCTTTCAAATGGATTGTTCTTTCTCGAGCTTCTCAGTGCTGTGGAGCCAAGGGTTGTTAATTGGAATCTTGTCACCAAGGGTGAAAGTG : ATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG : GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGT : GGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTG</gDNA_template>
            <first_frame> L  I  G  S  T  Q  R  N  L  Q  *  R  C  R  L  G  R  L  K  T  A  T  K  L  S  R  L  G  S  S  *  S  F  P  L  *  M  W  E  E  T  I  L  S  K  G  I  R  S  L  Y  L  :  L  S  C  G  S  *  *  G  L  I  C  F  S  F  *  R  T  *  D  R  V  S  E  G  R  R  L  L  M  L  I  F  S  L  G  Q  T  K  K  S  K  T  L  E  E  H  L  K  W  R  V  L  R :   I  R  A  F  Q  M  D  C  S  F  S  S  F  S  V  L  W  S  Q  G  L  L  I  G  I  L  S  P  R  V  K  V  :  M  R  K  R  S  *  M  L  P  I  S  S  V  L  H  G  N  L  G  V  L  S  F  C  C  L  R  I  S  W  R :   L  T  K  R  *  S  S  L  S  L  P  A  S  C  T  G  A  F  S  R  Q  R  T  I  *  S  L  L  R  V  L  L  H  L  M  H  H  Q  Q  D  L  *  M  A  L  C  P  P  I  L  L  L  H  L  M  H  P  L  H  L  Q  L  V  E  H  H  Q  L  L  L  T  H  L  Q  H  H  L  *  T  E  M  R  K  A  H  L  L  L  K  C  Q  S  W  S  W  L  L  T  M  H  H  L  I  L  L  K  C  Q  S  R  S  W  L  L  M  M  H  H  L  M  P  L  K  F  Q  S  *  S  W  L  L  T  T  L  H  L  I  L  L  K  C  Q  K  W  S  *  L  L  R  T  H  H  L  I  L  L  K  Y  H  K  W  S  W  L  L  T  T  H  H  L  I  L  P  K  G  Q  N  W  S  W  L  L  T  T  H  H  L  I  L  L  K   : W  S  K  L  E  L  A  A  E  D  A  P  S  D  T  T  </first_frame>
            <second_frame>  *  L  E  A  R  N  E  T  S  N  K  D  A  V  *  E  G  *  K  L  Q  P  S  C  Q  D  W  E  A  V  E  A  F  P  C  K  C  G  R  K  R  F  C  P  R  E  *  E  A  Y  T  C :   F  P  V  A  V  D  E  V  *  Y  A  S  A  F  E  E  L  E  I  A  F  P  R  E  G  D  Y  *  C  *  Y  S  L  L  G  K  Q  K  S  Q  K  H  W  K  N  I  *  N  G  E  F  *   : G  *  E  P  F  K  W  I  V  L  S  R  A  S  Q  C  C  G  A  K  G  C  *  L  E  S  C  H  Q  G  *  K  * :   *  G  K  E  V  E  C  Y  L  Y  H  Q  C  C  T  E  T  W  V  F  Y  L  S  V  A  *  G  Y  H  G   : G  *  P  K  D  D  P  H  S  H  C  Q  H  H  V  L  E  P  S  A  D  S  G  R  Y  R  V  S  C  E  Y  C  C  I  *  C  I  T  S  K  I  Y  E  W  L  Y  V  P  L  Y  C  C  F  T  *  C  I  P  C  T  F  N  *  W  S  I  I  S  Y  S  *  R  I  S  S  T  I  C  K  R  R  *  G  K  P  T  Y  Y  *  S  V  K  V  G  V  G  C  *  L  C  T  I  *  Y  S  *  S  V  K  V  E  V  G  C  *  *  C  T  I  *  C  H  *  S  F  K  V  E  V  G  C  *  R  H  S  I  *  Y  Y  *  S  V  K  S  G  V  D  C  *  G  R  T  I  *  Y  Y  *  S  I  T  S  G  V  G  C  *  Q  R  T  I  *  Y  Y  R  R  V  K  I  G  V  G  C  *  Q  R  T  I  *  Y  Y  *  S  :  G  Q  N  W  S  W  L  L  R  T  H  R  L  I  R  L </second_frame>
            <third_frame>   N  W  K  H  A  T  K  P  P  I  K  M  P  F  R  K  V  E  N  C  N  Q  V  V  K  I  G  K  Q  L  K  L  S  L  V  N  V  G  G  N  D  F  V  Q  G  N  K  K  L  I  L   : A  F  L  W  Q  L  M  R  F  N  M  L  Q  L  L  K  N  L  R  S  R  F  R  G  K  E  I  T  D  A  D  I  L  S  W  A  N  K  K  V  K  N  T  G  R  T  S  K  M  E  S  F  K  :  D  K  S  L  S  N  G  L  F  F  L  E  L  L  S  A  V  E  P  R  V  V  N  W  N  L  V  T  K  G  E  S   : D  E  E  K  K  L  N  A  T  Y  I  I  S  V  A  R  K  L  G  C  S  I  F  L  L  P  E  D  I  M  E  :  V  N  Q  K  M  I  L  T  L  T  A  S  I  M  Y  W  S  L  Q  Q  T  A  D  D  I  E  S  P  A  S  T  V  A  S  D  A  S  P  A  R  S  M  N  G  S  M  S  P  Y  T  A  A  S  P  D  A  S  P  A  P  S  I  S  G  A  S  S  A  T  P  D  A  S  P  A  P  S  V  N  G  D  E  E  S  P  L  I  T  E  V  S  K  L  E  L  V  A  D  Y  A  P  S  D  T  P  E  V  S  K  S  K  L  A  A  D  D  A  P  F  D  A  T  E  V  S  K  L  K  L  A  A  N  D  T  P  S  D  T  T  E  V  S  K  V  E  L  T  A  E  D  A  P  S  D  T  T  E  V  S  Q  V  E  L  A  A  D  N  A  P  S  D  T  T  E  G  S  K  L  E  L  A  A  D  N  A  P  S  D  T  T  E  V :   V  K  I  G  V  G  C  *  G  R  T  V  *  Y  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62867" stop="63020"/>
                    <exon start="63697" stop="63854"/>
                    <exon start="63940" stop="64036"/>
                    <exon start="64442" stop="64533"/>
                    <exon start="64957" stop="65531"/>
                    <exon start="65582" stop="65606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWKHATKPPIKMPFRKVENCNQVVKIGKQLKLSLVNVGGNDFVQGNKKLILAFLWQLMRFNMLQLLKNLRSRFRGKEITDADILSWANKKVKNTGRTSKMESFKDKSLSNGLFFLELLSAVEPRVVNWNLVTKGESDEEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQTADDIESPASTVASDASPARSMNGSMSPYTAASPDASPAPSISGASSATPDASPAPSVNGDEESPLITEVSKLELVADYAPSDTPEVSKSKLAADDAPFDATEVSKLKLAANDTPSDTTEVSKVELTAEDAPSDTTEVSQVELAADNAPSDTTEGSKLELAADNAPSDTTEVVKIGVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64410" e_stop="64533"/>
            <exon e_start="64957" e_stop="65531"/>
            <exon e_start="65582" e_stop="65629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.144" e_score="1.000"/>
          <exon-only e_score="0.854"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64410" e_stop="64533" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.724">
            <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64957" e_stop="65531" e_length="575"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.144">
            <gDNA_intron_boundary i_start="65532" i_stop="65581" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.854">
            <gDNA_exon_boundary e_start="65582" e_stop="65629" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64410" stop="64533"/>
              <exon start="64957" stop="65452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64444" stop="64533"/>
              <exon start="64957" stop="65314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65531"/>
              <exon start="65582" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65118" stop="65531"/>
              <exon start="65582" stop="65629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG : GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGT : GGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTG</gDNA_template>
            <first_frame> S  K  L  K  F  L  L  F  C  D  R  *  G  K  E  V  E  C  Y  L  Y  H  Q  C  C  T  E  T  W  V  F  Y  L  S  V  A  *  G  Y  H  G   : G  *  P  K  D  D  P  H  S  H  C  Q  H  H  V  L  E  P  S  A  D  S  G  R  Y  R  V  S  C  E  Y  C  C  I  *  C  I  T  S  K  I  Y  E  W  L  Y  V  P  L  Y  C  C  F  T  *  C  I  P  C  T  F  N  *  W  S  I  I  S  Y  S  *  R  I  S  S  T  I  C  K  R  R  *  G  K  P  T  Y  Y  *  S  V  K  V  G  V  G  C  *  L  C  T  I  *  Y  S  *  S  V  K  V  E  V  G  C  *  *  C  T  I  *  C  H  *  S  F  K  V  E  V  G  C  *  R  H  S  I  *  Y  Y  *  S  V  K  S  G  V  D  C  *  G  R  T  I  *  Y  Y  *  S  I  T  S  G  V  G  C  *  Q  R  T  I  *  Y  Y  R  R  V  K  I  G  V  G  C  *  Q  R  T  I  *  Y  Y  *  S  :  G  Q  N  W  S  W  L  L  R  T  H  R  L  I  R  L </first_frame>
            <second_frame>  P  N  *  N  F  F  C  S  V  T  D  E  E  K  K  L  N  A  T  Y  I  I  S  V  A  R  K  L  G  C  S  I  F  L  L  P  E  D  I  M  E  :  V  N  Q  K  M  I  L  T  L  T  A  S  I  M  Y  W  S  L  Q  Q  T  A  D  D  I  E  S  P  A  S  T  V  A  S  D  A  S  P  A  R  S  M  N  G  S  M  S  P  Y  T  A  A  S  P  D  A  S  P  A  P  S  I  S  G  A  S  S  A  T  P  D  A  S  P  A  P  S  V  N  G  D  E  E  S  P  L  I  T  E  V  S  K  L  E  L  V  A  D  Y  A  P  S  D  T  P  E  V  S  K  S  K  L  A  A  D  D  A  P  F  D  A  T  E  V  S  K  L  K  L  A  A  N  D  T  P  S  D  T  T  E  V  S  K  V  E  L  T  A  E  D  A  P  S  D  T  T  E  V  S  Q  V  E  L  A  A  D  N  A  P  S  D  T  T  E  G  S  K  L  E  L  A  A  D  N  A  P  S  D  T  T  E  V :   V  K  I  G  V  G  C  *  G  R  T  V  *  Y  D   </second_frame>
            <third_frame>   Q  T  K  I  S  F  V  L  *  Q  M  R  K  R  S  *  M  L  P  I  S  S  V  L  H  G  N  L  G  V  L  S  F  C  C  L  R  I  S  W  R :   L  T  K  R  *  S  S  L  S  L  P  A  S  C  T  G  A  F  S  R  Q  R  T  I  *  S  L  L  R  V  L  L  H  L  M  H  H  Q  Q  D  L  *  M  A  L  C  P  P  I  L  L  L  H  L  M  H  P  L  H  L  Q  L  V  E  H  H  Q  L  L  L  T  H  L  Q  H  H  L  *  T  E  M  R  K  A  H  L  L  L  K  C  Q  S  W  S  W  L  L  T  M  H  H  L  I  L  L  K  C  Q  S  R  S  W  L  L  M  M  H  H  L  M  P  L  K  F  Q  S  *  S  W  L  L  T  T  L  H  L  I  L  L  K  C  Q  K  W  S  *  L  L  R  T  H  H  L  I  L  L  K  Y  H  K  W  S  W  L  L  T  T  H  H  L  I  L  P  K  G  Q  N  W  S  W  L  L  T  T  H  H  L  I  L  L  K   : W  S  K  L  E  L  A  A  E  D  A  P  S  D  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64420" stop="64533"/>
                    <exon start="64957" stop="65531"/>
                    <exon start="65582" stop="65606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFCSVTDEEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQTADDIESPASTVASDASPARSMNGSMSPYTAASPDASPAPSISGASSATPDASPAPSVNGDEESPLITEVSKLELVADYAPSDTPEVSKSKLAADDAPFDATEVSKLKLAANDTPSDTTEVSKVELTAEDAPSDTTEVSQVELAADNAPSDTTEGSKLELAADNAPSDTTEVVKIGVGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="64410" e_stop="64533"/>
            <exon e_start="64957" e_stop="65672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.724" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64410" e_stop="64533" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.724">
            <gDNA_intron_boundary i_start="64534" i_stop="64956" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="64957" e_stop="65672" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64410" stop="64533"/>
              <exon start="64957" stop="65672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64410" stop="64533"/>
              <exon start="64957" stop="65452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64444" stop="64533"/>
              <exon start="64957" stop="65314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64456" stop="64533"/>
              <exon start="64957" stop="65424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAACTAAAATTTCTTTTGTTCTGTGACAGATGAGGAAAAGAAGTTGAATGCTACCTATATCATCAGTGTTGCACGGAAACTTGGGTGTTCTATCTTTCTGTTGCCTGAGGATATCATGGAG : GTTAACCAAAAGATGATCCTCACTCTCACTGCCAGCATCATGTACTGGAGCCTTCAGCAGACAGCGGACGATATAGAGTCTCCTGCGAGTACTGTTGCATCTGATGCATCACCAGCAAGATCTATGAATGGCTCTATGTCCCCCTATACTGCTGCTTCACCTGATGCATCCCCTGCACCTTCAATTAGTGGAGCATCATCAGCTACTCCTGACGCATCTCCAGCACCATCTGTAAACGGAGATGAGGAAAGCCCACTTATTACTGAAGTGTCAAAGTTGGAGTTGGTTGCTGACTATGCACCATCTGATACTCCTGAAGTGTCAAAGTCGAAGTTGGCTGCTGATGATGCACCATTTGATGCCACTGAAGTTTCAAAGTTGAAGTTGGCTGCTAACGACACTCCATCTGATACTACTGAAGTGTCAAAAGTGGAGTTGACTGCTGAGGACGCACCATCTGATACTACTGAAGTATCACAAGTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACCGAAGGGTCAAAATTGGAGTTGGCTGCTGACAACGCACCATCTGATACTACTGAAGTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTGAAGGGTCAAAATTGGAGTTGGCTGCTGAGGACGCACCGTCTGATACGACTGAAGGGTCAAACTTGGAGTTGGCTACTACCGATGCACCATCTGA</gDNA_template>
            <first_frame> S  K  L  K  F  L  L  F  C  D  R  *  G  K  E  V  E  C  Y  L  Y  H  Q  C  C  T  E  T  W  V  F  Y  L  S  V  A  *  G  Y  H  G   : G  *  P  K  D  D  P  H  S  H  C  Q  H  H  V  L  E  P  S  A  D  S  G  R  Y  R  V  S  C  E  Y  C  C  I  *  C  I  T  S  K  I  Y  E  W  L  Y  V  P  L  Y  C  C  F  T  *  C  I  P  C  T  F  N  *  W  S  I  I  S  Y  S  *  R  I  S  S  T  I  C  K  R  R  *  G  K  P  T  Y  Y  *  S  V  K  V  G  V  G  C  *  L  C  T  I  *  Y  S  *  S  V  K  V  E  V  G  C  *  *  C  T  I  *  C  H  *  S  F  K  V  E  V  G  C  *  R  H  S  I  *  Y  Y  *  S  V  K  S  G  V  D  C  *  G  R  T  I  *  Y  Y  *  S  I  T  S  G  V  G  C  *  Q  R  T  I  *  Y  Y  R  R  V  K  I  G  V  G  C  *  Q  R  T  I  *  Y  Y  *  S  V  K  F  F  F  F  F  F  F  F  F  F  F  Y  Y  *  R  V  K  I  G  V  G  C  *  G  R  T  V  *  Y  D  *  R  V  K  L  G  V  G  Y  Y  R  C  T  I  * </first_frame>
            <second_frame>  P  N  *  N  F  F  C  S  V  T  D  E  E  K  K  L  N  A  T  Y  I  I  S  V  A  R  K  L  G  C  S  I  F  L  L  P  E  D  I  M  E  :  V  N  Q  K  M  I  L  T  L  T  A  S  I  M  Y  W  S  L  Q  Q  T  A  D  D  I  E  S  P  A  S  T  V  A  S  D  A  S  P  A  R  S  M  N  G  S  M  S  P  Y  T  A  A  S  P  D  A  S  P  A  P  S  I  S  G  A  S  S  A  T  P  D  A  S  P  A  P  S  V  N  G  D  E  E  S  P  L  I  T  E  V  S  K  L  E  L  V  A  D  Y  A  P  S  D  T  P  E  V  S  K  S  K  L  A  A  D  D  A  P  F  D  A  T  E  V  S  K  L  K  L  A  A  N  D  T  P  S  D  T  T  E  V  S  K  V  E  L  T  A  E  D  A  P  S  D  T  T  E  V  S  Q  V  E  L  A  A  D  N  A  P  S  D  T  T  E  G  S  K  L  E  L  A  A  D  N  A  P  S  D  T  T  E  V  L  N  F  F  F  F  F  F  F  F  F  F  F  T  T  E  G  S  K  L  E  L  A  A  E  D  A  P  S  D  T  T  E  G  S  N  L  E  L  A  T  T  D  A  P  S   </second_frame>
            <third_frame>   Q  T  K  I  S  F  V  L  *  Q  M  R  K  R  S  *  M  L  P  I  S  S  V  L  H  G  N  L  G  V  L  S  F  C  C  L  R  I  S  W  R :   L  T  K  R  *  S  S  L  S  L  P  A  S  C  T  G  A  F  S  R  Q  R  T  I  *  S  L  L  R  V  L  L  H  L  M  H  H  Q  Q  D  L  *  M  A  L  C  P  P  I  L  L  L  H  L  M  H  P  L  H  L  Q  L  V  E  H  H  Q  L  L  L  T  H  L  Q  H  H  L  *  T  E  M  R  K  A  H  L  L  L  K  C  Q  S  W  S  W  L  L  T  M  H  H  L  I  L  L  K  C  Q  S  R  S  W  L  L  M  M  H  H  L  M  P  L  K  F  Q  S  *  S  W  L  L  T  T  L  H  L  I  L  L  K  C  Q  K  W  S  *  L  L  R  T  H  H  L  I  L  L  K  Y  H  K  W  S  W  L  L  T  T  H  H  L  I  L  P  K  G  Q  N  W  S  W  L  L  T  T  H  H  L  I  L  L  K  C  *  I  F  F  F  F  F  F  F  F  F  F  L  L  L  K  G  Q  N  W  S  W  L  L  R  T  H  R  L  I  R  L  K  G  Q  T  W  S  W  L  L  P  M  H  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64420" stop="64533"/>
                    <exon start="64957" stop="65670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFCSVTDEEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQTADDIESPASTVASDASPARSMNGSMSPYTAASPDASPAPSISGASSATPDASPAPSVNGDEESPLITEVSKLELVADYAPSDTPEVSKSKLAADDAPFDATEVSKLKLAANDTPSDTTEVSKVELTAEDAPSDTTEVSQVELAADNAPSDTTEGSKLELAADNAPSDTTEVLNFFFFFFFFFFFTTEGSKLELAAEDAPSDTTEGSNLELATTDAPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="66207" PGL_stop="65526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66207" e_stop="65526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="66207" e_stop="65526" e_length="682"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66207" stop="65526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAAAAGTATGAATTACTGAGAATATTTTCAAAATATAAATCATACATCTAATGAATCAAATTCTCTACTTACATTCAGATGAGAATAAAAAAAAAAACTACAAAAAAGTAGCAGGAAACAAAATTGGAAATAGTACAGTTGATTCTTCCAGAGGTACTATCGTGCTGAGTTGATAACATTGTGTACTTTTTATCTATATTTGTATCTAAAAGCATTTCGCATTTTTGAGTATAATTCATCTAAAACACATGTATGTTCTCTTCGTTTATGTTCTTCTTGCTTTCTCCCGCTAGCTTATTATTTGTCCCTCGTAGCTGTAAAGACGAAAACATTTAACTATAGTTCATTATCTGGTTCTGTACCTTCATTTTCAACTTCATGAGAAGAGGCTGTACTGTTGTTGTGTATCCTCAAGTAGTGAGGATGAGGGTGCATCTGATGGTATCTCTACATTTTGAGACTGCATTGGAGATGCTAACGTATCAAATGGTGCATCGTCAGCAACCAACTCGAGCTTTGACACTTCAGTACCATCAGATGGTGCATCGGTAGTAGCCAACTCCAAGTTTGACCCTTCAGTCGTATCAGACGGTGCGTCCTCAGCAGCCAACTCCAATTTTGACCCTTCAGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAACACTTCA</gDNA_template>
            <first_frame> I  K  S  M  N  Y  *  E  Y  F  Q  N  I  N  H  T  S  N  E  S  N  S  L  L  T  F  R  *  E  *  K  K  K  L  Q  K  S  S  R  K  Q  N  W  K  *  Y  S  *  F  F  Q  R  Y  Y  R  A  E  L  I  T  L  C  T  F  Y  L  Y  L  Y  L  K  A  F  R  I  F  E  Y  N  S  S  K  T  H  V  C  S  L  R  L  C  S  S  C  F  L  P  L  A  Y  Y  L  S  L  V  A  V  K  T  K  T  F  N  Y  S  S  L  S  G  S  V  P  S  F  S  T  S  *  E  E  A  V  L  L  L  C  I  L  K  *  *  G  *  G  C  I  *  W  Y  L  Y  I  L  R  L  H  W  R  C  *  R  I  K  W  C  I  V  S  N  Q  L  E  L  *  H  F  S  T  I  R  W  C  I  G  S  S  Q  L  Q  V  *  P  F  S  R  I  R  R  C  V  L  S  S  Q  L  Q  F  *  P  F  S  S  F  F  F  F  F  F  F  F  F  F  F  F  *  H  F  </first_frame>
            <second_frame>  *  K  V  *  I  T  E  N  I  F  K  I  *  I  I  H  L  M  N  Q  I  L  Y  L  H  S  D  E  N  K  K  K  N  Y  K  K  V  A  G  N  K  I  G  N  S  T  V  D  S  S  R  G  T  I  V  L  S  *  *  H  C  V  L  F  I  Y  I  C  I  *  K  H  F  A  F  L  S  I  I  H  L  K  H  M  Y  V  L  F  V  Y  V  L  L  A  F  S  R  *  L  I  I  C  P  S  *  L  *  R  R  K  H  L  T  I  V  H  Y  L  V  L  Y  L  H  F  Q  L  H  E  K  R  L  Y  C  C  C  V  S  S  S  S  E  D  E  G  A  S  D  G  I  S  T  F  *  D  C  I  G  D  A  N  V  S  N  G  A  S  S  A  T  N  S  S  F  D  T  S  V  P  S  D  G  A  S  V  V  A  N  S  K  F  D  P  S  V  V  S  D  G  A  S  S  A  A  N  S  N  F  D  P  S  V  V  F  F  F  F  F  F  F  F  F  F  F  F  N  T  S </second_frame>
            <third_frame>   K  K  Y  E  L  L  R  I  F  S  K  Y  K  S  Y  I  *  *  I  K  F  S  T  Y  I  Q  M  R  I  K  K  K  T  T  K  K  *  Q  E  T  K  L  E  I  V  Q  L  I  L  P  E  V  L  S  C  *  V  D  N  I  V  Y  F  L  S  I  F  V  S  K  S  I  S  H  F  *  V  *  F  I  *  N  T  C  M  F  S  S  F  M  F  F  L  L  S  P  A  S  L  L  F  V  P  R  S  C  K  D  E  N  I  *  L  *  F  I  I  W  F  C  T  F  I  F  N  F  M  R  R  G  C  T  V  V  V  Y  P  Q  V  V  R  M  R  V  H  L  M  V  S  L  H  F  E  T  A  L  E  M  L  T  Y  Q  M  V  H  R  Q  Q  P  T  R  A  L  T  L  Q  Y  H  Q  M  V  H  R  *  *  P  T  P  S  L  T  L  Q  S  Y  Q  T  V  R  P  Q  Q  P  T  P  I  L  T  L  Q  *  F  F  F  F  F  F  F  F  F  F  F  F  L  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66063" stop="65824"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQRYYRAELITLCTFYLYLYLKAFRIFEYNSSKTHVCSLRLCSSCFLPLAYYLSLVAVKTKTFNYSSLSGSVPSFSTS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65747" stop="65526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCIGDANVSNGASSATNSSFDTSVPSDGASVVANSKFDPSVVSDGASSAANSNFDPSVVFFFFFFFFFFFFNTS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65863" stop="65654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIIWFCTFIFNFMRRGCTVVVYPQVVRMRVHLMVSLHFETALEMLTYQMVHRQQPTRALTLQYHQMVHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="68791" PGL_stop="69717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68791" e_stop="69717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68791" e_stop="69717" e_length="927"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68791" stop="69613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68865" stop="69543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68875" stop="69714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68883" stop="69717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68886" stop="69526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAATGTCATCAATTAACATTTGTCTCTCTATAATCCTCTCTCTTTGCTACTCCTATTTCATATCATCCAAAATCCCCAAAGGTATTCCAAGGCTAATTTCACTTCTTCCCATTTTTTACCTCTTCACAATTCTCCCACTTTACTTTTCTTCTTCATTTCTTATAGCACTCACCACTTTCTTCATTACTTGGCTTGCCAATTTCAAACTCCTCCTTTTTGCCTTTAATCAAGGCCCTCTTTCTTCATTCACACAAAAAAATGCAACAAATCTTCCTATATTCATTTTTATGGCTTCTCTTCCTCTAAGATCCAAACAAAATATGAAAAACCCCACCAAGAAAATCCCATTAAATCTAGGTTTAGAGTTTGTCCTTTTTGCAATTTTCTTAGAGTTGACTTTTCATCATAAAAGTCAACTCCACCCTAAATTAATCTTGATTTGTTATTGTTTCTTGGTTTTTCTCATGATTGATATTCTTGTAGCATTATCTAGCAATATTGTTAAAATAATCCTAGTGGGGTTTGAGTTAGAATTAGAGTCACCATCAAATGAACCTTATTTATCAACTTCCCTTCAAGATTTTTGGGGAAATAGGTGGAATCTCACCGTAACCAATACACTTCGTCTCACCGTATACAACCCGGTAAGGTCAGTATTGTCAGAAGTTGTCGGGAGGATGTGTGCCCTACGTGTTGCCGTGCTGGCAACTTTCGTCGTATCCGGTTTAATGCATGAGCTTTTGTTTTATTACGTTAATCGCGTGAGCCCTTCGTGGGAAATGACGGGCTTTTTTGTGTTACACGGGCTTTGTGTGATGGTGGAGATTGGTGTTAAGAGGGCTTTAAAGGATACGTGGCGGCTACCGGGCTTTGTTTCGGGCCTGTTAACGGTTGGGTTTGTGGTTGTTACTGCTTTTGGGCTTT</gDNA_template>
            <first_frame> R  K  C  H  Q  L  T  F  V  S  L  *  S  S  L  F  A  T  P  I  S  Y  H  P  K  S  P  K  V  F  Q  G  *  F  H  F  F  P  F  F  T  S  S  Q  F  S  H  F  T  F  L  L  H  F  L  *  H  S  P  L  S  S  L  L  G  L  P  I  S  N  S  S  F  L  P  L  I  K  A  L  F  L  H  S  H  K  K  M  Q  Q  I  F  L  Y  S  F  L  W  L  L  F  L  *  D  P  N  K  I  *  K  T  P  P  R  K  S  H  *  I  *  V  *  S  L  S  F  L  Q  F  S  *  S  *  L  F  I  I  K  V  N  S  T  L  N  *  S  *  F  V  I  V  S  W  F  F  S  *  L  I  F  L  *  H  Y  L  A  I  L  L  K  *  S  *  W  G  L  S  *  N  *  S  H  H  Q  M  N  L  I  Y  Q  L  P  F  K  I  F  G  E  I  G  G  I  S  P  *  P  I  H  F  V  S  P  Y  T  T  R  *  G  Q  Y  C  Q  K  L  S  G  G  C  V  P  Y  V  L  P  C  W  Q  L  S  S  Y  P  V  *  C  M  S  F  C  F  I  T  L  I  A  *  A  L  R  G  K  *  R  A  F  L  C  Y  T  G  F  V  *  W  W  R  L  V  L  R  G  L  *  R  I  R  G  G  Y  R  A  L  F  R  A  C  *  R  L  G  L  W  L  L  L  L  L  G  F </first_frame>
            <second_frame>  E  N  V  I  N  *  H  L  S  L  Y  N  P  L  S  L  L  L  L  F  H  I  I  Q  N  P  Q  R  Y  S  K  A  N  F  T  S  S  H  F  L  P  L  H  N  S  P  T  L  L  F  F  F  I  S  Y  S  T  H  H  F  L  H  Y  L  A  C  Q  F  Q  T  P  P  F  C  L  *  S  R  P  S  F  F  I  H  T  K  K  C  N  K  S  S  Y  I  H  F  Y  G  F  S  S  S  K  I  Q  T  K  Y  E  K  P  H  Q  E  N  P  I  K  S  R  F  R  V  C  P  F  C  N  F  L  R  V  D  F  S  S  *  K  S  T  P  P  *  I  N  L  D  L  L  L  F  L  G  F  S  H  D  *  Y  S  C  S  I  I  *  Q  Y  C  *  N  N  P  S  G  V  *  V  R  I  R  V  T  I  K  *  T  L  F  I  N  F  P  S  R  F  L  G  K  *  V  E  S  H  R  N  Q  Y  T  S  S  H  R  I  Q  P  G  K  V  S  I  V  R  S  C  R  E  D  V  C  P  T  C  C  R  A  G  N  F  R  R  I  R  F  N  A  *  A  F  V  L  L  R  *  S  R  E  P  F  V  G  N  D  G  L  F  C  V  T  R  A  L  C  D  G  G  D  W  C  *  E  G  F  K  G  Y  V  A  A  T  G  L  C  F  G  P  V  N  G  W  V  C  G  C  Y  C  F  W  A   </second_frame>
            <third_frame>   K  M  S  S  I  N  I  C  L  S  I  I  L  S  L  C  Y  S  Y  F  I  S  S  K  I  P  K  G  I  P  R  L  I  S  L  L  P  I  F  Y  L  F  T  I  L  P  L  Y  F  S  S  S  F  L  I  A  L  T  T  F  F  I  T  W  L  A  N  F  K  L  L  L  F  A  F  N  Q  G  P  L  S  S  F  T  Q  K  N  A  T  N  L  P  I  F  I  F  M  A  S  L  P  L  R  S  K  Q  N  M  K  N  P  T  K  K  I  P  L  N  L  G  L  E  F  V  L  F  A  I  F  L  E  L  T  F  H  H  K  S  Q  L  H  P  K  L  I  L  I  C  Y  C  F  L  V  F  L  M  I  D  I  L  V  A  L  S  S  N  I  V  K  I  I  L  V  G  F  E  L  E  L  E  S  P  S  N  E  P  Y  L  S  T  S  L  Q  D  F  W  G  N  R  W  N  L  T  V  T  N  T  L  R  L  T  V  Y  N  P  V  R  S  V  L  S  E  V  V  G  R  M  C  A  L  R  V  A  V  L  A  T  F  V  V  S  G  L  M  H  E  L  L  F  Y  Y  V  N  R  V  S  P  S  W  E  M  T  G  F  F  V  L  H  G  L  C  V  M  V  E  I  G  V  K  R  A  L  K  D  T  W  R  L  P  G  F  V  S  G  L  L  T  V  G  F  V  V  V  T  A  F  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68793" stop="69716"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSINICLSIILSLCYSYFISSKIPKGIPRLISLLPIFYLFTILPLYFSSSFLIALTTFFITWLANFKLLLFAFNQGPLSSFTQKNATNLPIFIFMASLPLRSKQNMKNPTKKIPLNLGLEFVLFAIFLELTFHHKSQLHPKLILICYCFLVFLMIDILVALSSNIVKIILVGFELELESPSNEPYLSTSLQDFWGNRWNLTVTNTLRLTVYNPVRSVLSEVVGRMCALRVAVLATFVVSGLMHELLFYYVNRVSPSWEMTGFFVLHGLCVMVEIGVKRALKDTWRLPGFVSGLLTVGFVVVTAFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="70677" PGL_stop="70355"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70677" e_stop="70355"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="70677" e_stop="70355" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70677" stop="70355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGTATGCATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAACTAGAAAAAGTTGTATTTCACTGCAATTGTATAATTCACAATTGTATGATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACTCGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAATG</gDNA_template>
            <first_frame> K  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  V  V  F  H  C  N  C  I  I  H  N  C  M  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  S  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  A  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  N  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  N  </second_frame>
            <third_frame>   K  C  M  H  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  T  R  K  S  C  I  S  L  Q  L  Y  N  S  Q  L  Y  D  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  L  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0061J13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="72271" PGL_stop="77135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72271" e_stop="72571"/>
            <exon e_start="74572" e_stop="74671"/>
            <exon e_start="75019" e_stop="75248"/>
            <exon e_start="75826" e_stop="75993"/>
            <exon e_start="76333" e_stop="76566"/>
            <exon e_start="76672" e_stop="77135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.711" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72271" e_stop="72571" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74572" e_stop="74671" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75019" e_stop="75248" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.711" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75249" i_stop="75825" i_length="577"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75826" e_stop="75993" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76333" e_stop="76566" e_length="234"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76672" e_stop="77135" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72271" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72276" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75248"/>
              <exon start="75826" stop="75993"/>
              <exon start="76333" stop="76362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72525" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75248"/>
              <exon start="75826" stop="75993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72530" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75248"/>
              <exon start="75826" stop="75993"/>
              <exon start="76333" stop="76566"/>
              <exon start="76672" stop="76751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75037" stop="75248"/>
              <exon start="75826" stop="75993"/>
              <exon start="76333" stop="76566"/>
              <exon start="76672" stop="76721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75833" stop="75993"/>
              <exon start="76333" stop="76566"/>
              <exon start="76672" stop="77054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75969" stop="75993"/>
              <exon start="76333" stop="76566"/>
              <exon start="76672" stop="77135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76566"/>
              <exon start="76672" stop="77037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76711" stop="76889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGAATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG : GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG : GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAAGCAGGTTATTTGACTGTTGGTGTTGTTACATATCCATTCAGCTTTGAAGGACGTAAAAGATCTGTGCAG : GCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT : ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG : GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGCATGTGGCTGTAGAGATAGTGATTATTCTTTATCAGATGCATATTCAGCTATGCTCTCTTGTGACATGCACGTTTTTACGCATGTAAAAATATTGAT</gDNA_template>
            <first_frame> Y  R  I  L  G  K  L  K  Y  R  E  S  N  N  G  D  F  R  A  L  K  S  S  R  I  S  F  F  S  V  F  F  L  S  F  F  S  *  V  A  F  F  L  H  S  *  T  M  L  L  H  R  C  S  P  E  K  F  L  P  A  S  T  F  Q  H  F  K  F  I  H  S  D  G  F  C  *  N  *  G  R  R  R  R  W  R  W  K  Q  C  R  *  P  Y  D  W  *  W  F  T   : G  C  *  L  L  C  Y  K  H  G  C  S  S  T  G  T  V  C  C  R  E  P  T  S  N  W  R  T  S  D  S  W  A  W :   Y  W  W  Q  S  S  F  R  G  T  G  S  R  G  V  K  G  S  Y  C  K  F  S  E  R  F  R  Y  G  F  H  N  S  R  N  G  W  R  Y  R  I  W  C  G  S  C  C  G  S  N  S  K  R  S  R  L  F  D  C  W  C  C  Y  I  S  I  Q  L  *  R  T  *  K  I  C  A   : G  S  G  S  N  *  K  T  S  E  K  C  *  H  T  Y  S  N  S  Q  *  S  S  A  R  Y  C  R  *  A  D  T  T  S  R  C  F  S  S  C  G  *  C  I  T  S  R  C  P  R  N  I  *  Y  N  H   : Y  S  W  A  C  E  C  G  F  C  R  C  K  G  S  D  E  R  L  W  N  C  N  A  R  S  G  C  F  I  K  *  E  P  S  *  R  S  S  R  T  S  N  S  G  P  S  N  W  V  V  N  S  I  C  N  W  G  S  I  *  H  Y  R  R  K  R  H  N  F  A  R  S  E  *  G  V  P   : G  C  Y  Q  S  S  *  S  L  C  *  H  H  I  W  C  C  C  *  *  A  L  Q  W  *  N  T  R  D  N  N  C  N  W  F  H  P  V  V  S  E  D  T  S  I  *  S  T  G  S  K  A  N  R  E  G  G  R  N  Q  R  K  H  G  I  T  C  Y  P  E  I  I  K  H  T  F  N  N  L  T  D  T  Y  S  K  A  V  L  L  A  P  S  Y  C  F  I  L  Q  L  H  Y  S  P  F  *  F  L  P  L  *  L  T  C  F  A  E  G  K  L  I  G  V  C  M  W  L  *  R  *  *  L  F  F  I  R  C  I  F  S  Y  A  L  L  *  H  A  R  F  Y  A  C  K  N  I  D </first_frame>
            <second_frame>  T  E  F  W  V  N  *  N  T  E  K  A  T  M  A  I  L  G  L  S  N  P  A  E  L  A  S  S  P  S  S  S  L  A  F  S  H  R  L  H  S  S  F  I  P  K  Q  C  F  F  T  G  V  R  R  K  S  F  C  R  P  Q  R  F  S  I  S  S  S  F  T  P  M  D  S  A  K  I  K  V  V  G  V  G  G  G  G  N  N  A  V  N  R  M  I  G  S  G  L  Q  :  G  V  D  F  Y  A  I  N  T  D  A  Q  A  L  V  Q  S  A  A  E  N  P  L  Q  I  G  E  L  L  T  R  G  L   : G  T  G  G  N  P  L  L  G  E  Q  A  A  E  E  S  K  E  A  I  A  N  S  L  K  G  S  D  M  V  F  I  T  A  G  M  G  G  G  T  G  S  G  A  A  P  V  V  A  Q  I  A  K  E  A  G  Y  L  T  V  G  V  V  T  Y  P  F  S  F  E  G  R  K  R  S  V  Q  :  A  L  E  A  I  E  K  L  Q  R  N  V  D  T  L  I  V  I  P  N  D  R  L  L  D  I  A  D  E  Q  T  P  L  Q  D  A  F  L  L  A  D  D  V  L  R  Q  G  V  Q  G  I  S  D  I  I  T  :  I  P  G  L  V  N  V  D  F  A  D  V  K  A  V  M  K  D  S  G  T  A  M  L  G  V  G  V  S  S  S  K  N  R  A  E  E  A  A  E  Q  A  T  L  A  P  L  I  G  S  S  I  Q  S  A  T  G  V  V  Y  N  I  T  G  G  K  D  I  T  L  Q  E  V  N  R  V  S  Q  :  V  V  T  S  L  A  D  P  S  A  N  I  I  F  G  A  V  V  D  E  R  Y  N  G  E  I  H  V  T  I  I  A  T  G  F  T  Q  S  F  Q  K  T  L  L  S  D  P  R  G  A  K  L  I  E  K  G  A  G  I  K  E  N  M  A  S  P  V  T  L  R  S  S  N  T  P  S  T  T  S  R  T  P  T  R  R  L  F  F  *  L  L  H  I  V  L  F  Y  S  F  I  T  L  L  F  S  F  F  L  C  S  *  H  V  L  L  K  G  N  *  L  V  F  A  C  G  C  R  D  S  D  Y  S  L  S  D  A  Y  S  A  M  L  S  C  D  M  H  V  F  T  H  V  K  I  L   </second_frame>
            <third_frame>   Q  N  F  G  *  T  K  I  Q  R  K  Q  Q  W  R  F  *  G  S  Q  I  Q  Q  N  *  L  L  L  R  L  L  P  *  L  F  L  I  G  C  I  L  P  S  F  L  N  N  A  S  S  P  V  F  A  G  K  V  F  A  G  L  N  V  S  A  F  Q  V  H  S  L  R  W  I  L  L  K  L  R  S  S  A  S  V  E  V  E  T  M  P  L  T  V  *  L  V  V  V  Y  R :   V  L  T  S  M  L  *  T  R  M  L  K  H  W  Y  S  L  L  P  R  T  H  F  K  L  E  N  F  *  L  V  G  L  :  V  L  V  A  I  L  F  *  G  N  R  Q  Q  R  S  Q  R  K  L  L  Q  I  L  *  K  V  Q  I  W  F  S  *  Q  Q  E  W  V  E  V  Q  D  L  V  R  L  L  L  W  L  K  *  Q  K  K  Q  V  I  *  L  L  V  L  L  H  I  H  S  A  L  K  D  V  K  D  L  C  R :   L  W  K  Q  L  K  N  F  R  E  M  L  T  H  L  *  *  F  P  M  I  V  C  *  I  L  P  M  S  R  H  H  F  K  M  L  F  F  L  R  M  M  Y  Y  V  K  V  S  K  E  Y  L  I  *  S  L :   F  L  G  L  *  M  W  I  L  P  M  *  R  Q  *  *  K  T  L  E  L  Q  C  S  E  W  V  F  H  Q  V  R  T  E  L  K  K  Q  P  N  K  Q  L  W  P  L  *  L  G  R  Q  F  N  L  Q  L  G  *  Y  I  T  L  Q  E  E  K  T  *  L  C  K  K  *  I  G  C  P  R :   L  L  P  V  *  L  I  P  L  L  T  S  Y  L  V  L  L  L  M  S  V  T  M  V  K  Y  T  *  Q  *  L  Q  L  V  S  P  S  R  F  R  R  H  F  Y  L  I  H  G  E  Q  S  *  S  R  R  G  Q  E  S  K  K  T  W  H  H  L  L  P  *  D  H  Q  T  H  L  Q  Q  P  H  G  H  L  L  E  G  C  S  F  S  S  F  I  L  F  Y  F  T  A  S  L  L  S  F  L  V  S  S  F  V  V  N  M  F  C  *  R  E  T  D  W  C  L  H  V  A  V  E  I  V  I  I  L  Y  Q  M  H  I  Q  L  C  S  L  V  T  C  T  F  L  R  M  *  K  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72293" stop="72571"/>
                    <exon start="74572" stop="74671"/>
                    <exon start="75019" stop="75248"/>
                    <exon start="75826" stop="75993"/>
                    <exon start="76333" stop="76566"/>
                    <exon start="76672" stop="76938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEKATMAILGLSNPAELASSPSSSLAFSHRLHSSFIPKQCFFTGVRRKSFCRPQRFSISSSFTPMDSAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDAQALVQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIANSLKGSDMVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQRNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIIATGFTQSFQKTLLSDPRGAKLIEKGAGIKENMASPVTLRSSNTPSTTSRTPTRRLFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72271" e_stop="72571"/>
            <exon e_start="74572" e_stop="74671"/>
            <exon e_start="75019" e_stop="75179"/>
            <exon e_start="75835" e_stop="75993"/>
            <exon e_start="76333" e_stop="76566"/>
            <exon e_start="76672" e_stop="77135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.314" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72271" e_stop="72571" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.984">
            <gDNA_intron_boundary i_start="72572" i_stop="74571" i_length="2000"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74572" e_stop="74671" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="74672" i_stop="75018" i_length="347"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75019" e_stop="75179" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.314" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75180" i_stop="75834" i_length="655"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75835" e_stop="75993" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75994" i_stop="76332" i_length="339"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76333" e_stop="76566" e_length="234"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76567" i_stop="76671" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76672" e_stop="77135" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72271" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72291" stop="72571"/>
              <exon start="74572" stop="74671"/>
              <exon start="75019" stop="75179"/>
              <exon start="75835" stop="75993"/>
              <exon start="76333" stop="76403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75969" stop="75993"/>
              <exon start="76333" stop="76566"/>
              <exon start="76672" stop="77135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76477" stop="76566"/>
              <exon start="76672" stop="77037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293401" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76711" stop="76889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAGAATTTTGGGTAAACTAAAATACAGAGAAAGCAACAATGGCGATTTTAGGGCTCTCAAATCCAGCAGAATTAGCTTCTTCTCCGTCTTCTTCCTTAGCTTTTTCTCATAGGTTGCATTCTTCCTTCATTCCTAAACAATGCTTCTTCACCGGTGTTCGCCGGAAAAGTTTTTGCCGGCCTCAACGTTTCAGCATTTCAAGTTCATTCACTCCGATGGATTCTGCTAAAATTAAGGTCGTCGGCGTCGGTGGAGGTGGAAACAATGCCGTTAACCGTATGATTGGTAGTGGTTTACAG : GGTGTTGACTTCTATGCTATAAACACGGATGCTCAAGCACTGGTACAGTCTGCTGCCGAGAACCCACTTCAAATTGGAGAACTTCTGACTCGTGGGCTTG : GTACTGGTGGCAATCCTCTTTTAGGGGAACAGGCAGCAGAGGAGTCAAAGGAAGCTATTGCAAATTCTCTGAAAGGTTCAGATATGGTTTTCATAACAGCAGGAATGGGTGGAGGTACAGGATCTGGTGCGGCTCCTGTTGTGGCTCAAATAGCAAAAGAA : GCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACT : ATTCCTGGGCTTGTGAATGTGGATTTTGCCGATGTAAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTCGGAGTGGGTGTTTCATCAAGTAAGAACCGAGCTGAAGAAGCAGCCGAACAAGCAACTCTGGCCCCTCTAATTGGGTCGTCAATTCAATCTGCAACTGGGGTAGTATATAACATTACAGGAGGAAAAGACATAACTTTGCAAGAAGTGAATAGGGTGTCCCAG : GTTGTTACCAGTCTAGCTGATCCCTCTGCTAACATCATATTTGGTGCTGTTGTTGATGAGCGTTACAATGGTGAAATACACGTGACAATAATTGCAACTGGTTTCACCCAGTCGTTTCAGAAGACACTTCTATCTGATCCACGGGGAGCAAAGCTAATCGAGAAGGGGGCAGGAATCAAAGAAAACATGGCATCACCTGTTACCCTGAGATCATCAAACACACCTTCAACAACCTCACGGACACCTACTCGAAGGCTGTTCTTTTAGCTCCTTCATATTGTTTTATTTTACAGCTTCATTACTCTCCTTTTTAGTTTCTTCCTTTGTAGTTAACATGTTTTGCTGAAGGGAAACTGATTGGTGTTTGCATGTGGCTGTAGAGATAGTGATTATTCTTTATCAGATGCATATTCAGCTATGCTCTCTTGTGACATGCACGTTTTTACGCATGTAAAAATATTGAT</gDNA_template>
            <first_frame> Y  R  I  L  G  K  L  K  Y  R  E  S  N  N  G  D  F  R  A  L  K  S  S  R  I  S  F  F  S  V  F  F  L  S  F  F  S  *  V  A  F  F  L  H  S  *  T  M  L  L  H  R  C  S  P  E  K  F  L  P  A  S  T  F  Q  H  F  K  F  I  H  S  D  G  F  C  *  N  *  G  R  R  R  R  W  R  W  K  Q  C  R  *  P  Y  D  W  *  W  F  T   : G  C  *  L  L  C  Y  K  H  G  C  S  S  T  G  T  V  C  C  R  E  P  T  S  N  W  R  T  S  D  S  W  A  W :   Y  W  W  Q  S  S  F  R  G  T  G  S  R  G  V  K  G  S  Y  C  K  F  S  E  R  F  R  Y  G  F  H  N  S  R  N  G  W  R  Y  R  I  W  C  G  S  C  C  G  S  N  S  K  R   : S  N  *  K  T  S  E  K  C  *  H  T  Y  S  N  S  Q  *  S  S  A  R  Y  C  R  *  A  D  T  T  S  R  C  F  S  S  C  G  *  C  I  T  S  R  C  P  R  N  I  *  Y  N  H   : Y  S  W  A  C  E  C  G  F  C  R  C  K  G  S  D  E  R  L  W  N  C  N  A  R  S  G  C  F  I  K  *  E  P  S  *  R  S  S  R  T  S  N  S  G  P  S  N  W  V  V  N  S  I  C  N  W  G  S  I  *  H  Y  R  R  K  R  H  N  F  A  R  S  E  *  G  V  P   : G  C  Y  Q  S  S  *  S  L  C  *  H  H  I  W  C  C  C  *  *  A  L  Q  W  *  N  T  R  D  N  N  C  N  W  F  H  P  V  V  S  E  D  T  S  I  *  S  T  G  S  K  A  N  R  E  G  G  R  N  Q  R  K  H  G  I  T  C  Y  P  E  I  I  K  H  T  F  N  N  L  T  D  T  Y  S  K  A  V  L  L  A  P  S  Y  C  F  I  L  Q  L  H  Y  S  P  F  *  F  L  P  L  *  L  T  C  F  A  E  G  K  L  I  G  V  C  M  W  L  *  R  *  *  L  F  F  I  R  C  I  F  S  Y  A  L  L  *  H  A  R  F  Y  A  C  K  N  I  D </first_frame>
            <second_frame>  T  E  F  W  V  N  *  N  T  E  K  A  T  M  A  I  L  G  L  S  N  P  A  E  L  A  S  S  P  S  S  S  L  A  F  S  H  R  L  H  S  S  F  I  P  K  Q  C  F  F  T  G  V  R  R  K  S  F  C  R  P  Q  R  F  S  I  S  S  S  F  T  P  M  D  S  A  K  I  K  V  V  G  V  G  G  G  G  N  N  A  V  N  R  M  I  G  S  G  L  Q  :  G  V  D  F  Y  A  I  N  T  D  A  Q  A  L  V  Q  S  A  A  E  N  P  L  Q  I  G  E  L  L  T  R  G  L   : G  T  G  G  N  P  L  L  G  E  Q  A  A  E  E  S  K  E  A  I  A  N  S  L  K  G  S  D  M  V  F  I  T  A  G  M  G  G  G  T  G  S  G  A  A  P  V  V  A  Q  I  A  K  E  :  A  I  E  K  L  Q  R  N  V  D  T  L  I  V  I  P  N  D  R  L  L  D  I  A  D  E  Q  T  P  L  Q  D  A  F  L  L  A  D  D  V  L  R  Q  G  V  Q  G  I  S  D  I  I  T  :  I  P  G  L  V  N  V  D  F  A  D  V  K  A  V  M  K  D  S  G  T  A  M  L  G  V  G  V  S  S  S  K  N  R  A  E  E  A  A  E  Q  A  T  L  A  P  L  I  G  S  S  I  Q  S  A  T  G  V  V  Y  N  I  T  G  G  K  D  I  T  L  Q  E  V  N  R  V  S  Q  :  V  V  T  S  L  A  D  P  S  A  N  I  I  F  G  A  V  V  D  E  R  Y  N  G  E  I  H  V  T  I  I  A  T  G  F  T  Q  S  F  Q  K  T  L  L  S  D  P  R  G  A  K  L  I  E  K  G  A  G  I  K  E  N  M  A  S  P  V  T  L  R  S  S  N  T  P  S  T  T  S  R  T  P  T  R  R  L  F  F  *  L  L  H  I  V  L  F  Y  S  F  I  T  L  L  F  S  F  F  L  C  S  *  H  V  L  L  K  G  N  *  L  V  F  A  C  G  C  R  D  S  D  Y  S  L  S  D  A  Y  S  A  M  L  S  C  D  M  H  V  F  T  H  V  K  I  L   </second_frame>
            <third_frame>   Q  N  F  G  *  T  K  I  Q  R  K  Q  Q  W  R  F  *  G  S  Q  I  Q  Q  N  *  L  L  L  R  L  L  P  *  L  F  L  I  G  C  I  L  P  S  F  L  N  N  A  S  S  P  V  F  A  G  K  V  F  A  G  L  N  V  S  A  F  Q  V  H  S  L  R  W  I  L  L  K  L  R  S  S  A  S  V  E  V  E  T  M  P  L  T  V  *  L  V  V  V  Y  R :   V  L  T  S  M  L  *  T  R  M  L  K  H  W  Y  S  L  L  P  R  T  H  F  K  L  E  N  F  *  L  V  G  L  :  V  L  V  A  I  L  F  *  G  N  R  Q  Q  R  S  Q  R  K  L  L  Q  I  L  *  K  V  Q  I  W  F  S  *  Q  Q  E  W  V  E  V  Q  D  L  V  R  L  L  L  W  L  K  *  Q  K  K :   Q  L  K  N  F  R  E  M  L  T  H  L  *  *  F  P  M  I  V  C  *  I  L  P  M  S  R  H  H  F  K  M  L  F  F  L  R  M  M  Y  Y  V  K  V  S  K  E  Y  L  I  *  S  L :   F  L  G  L  *  M  W  I  L  P  M  *  R  Q  *  *  K  T  L  E  L  Q  C  S  E  W  V  F  H  Q  V  R  T  E  L  K  K  Q  P  N  K  Q  L  W  P  L  *  L  G  R  Q  F  N  L  Q  L  G  *  Y  I  T  L  Q  E  E  K  T  *  L  C  K  K  *  I  G  C  P  R :   L  L  P  V  *  L  I  P  L  L  T  S  Y  L  V  L  L  L  M  S  V  T  M  V  K  Y  T  *  Q  *  L  Q  L  V  S  P  S  R  F  R  R  H  F  Y  L  I  H  G  E  Q  S  *  S  R  R  G  Q  E  S  K  K  T  W  H  H  L  L  P  *  D  H  Q  T  H  L  Q  Q  P  H  G  H  L  L  E  G  C  S  F  S  S  F  I  L  F  Y  F  T  A  S  L  L  S  F  L  V  S  S  F  V  V  N  M  F  C  *  R  E  T  D  W  C  L  H  V  A  V  E  I  V  I  I  L  Y  Q  M  H  I  Q  L  C  S  L  V  T  C  T  F  L  R  M  *  K  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72293" stop="72571"/>
                    <exon start="74572" stop="74671"/>
                    <exon start="75019" stop="75179"/>
                    <exon start="75835" stop="75993"/>
                    <exon start="76333" stop="76566"/>
                    <exon start="76672" stop="76938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTEKATMAILGLSNPAELASSPSSSLAFSHRLHSSFIPKQCFFTGVRRKSFCRPQRFSISSSFTPMDSAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDAQALVQSAAENPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIANSLKGSDMVFITAGMGGGTGSGAAPVVAQIAKEAIEKLQRNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIIATGFTQSFQKTLLSDPRGAKLIEKGAGIKENMASPVTLRSSNTPSTTSRTPTRRLFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="75743" e_stop="76316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="75743" e_stop="76316" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75743" stop="76316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTTTTGTTCATGGCAATGCTTTATTTCTCCTGTCATCCATAGTCTTTCATGTTTCTAATTTGAACTTATTGACCGACAGGCTCTGGAAGCAATTGAAAAACTTCAGAGAAATGTTGACACACTTATAGTAATTCCCAATGATCGTCTGCTAGATATTGCCGATGAGCAGACACCACTTCAAGATGCTTTTCTTCTTGCGGATGATGTATTACGTCAAGGTGTCCAAGGAATATCTGATATAATCACTGTGAGTTCCTTTGTCAATAGCCAACATCTCTTTTCTTTAAATGATATGCTGAAATTCTTCTTTGTATAATATAAATGTATAATGTCATCGTACTGGTGATGTTGCTTCACTAAATTCCTTAAACACACTTGCGGACACTCACCAACACTGATAAGGGCGATGATTTTTTTCTGTACTAAATATTTTCATAAAGTTGCATCTGTTTAATGTTATATCAAAATAAGTTCTCCCATTAAAAAAGGATTGCAAATTTACCCATTTGCAATGTACCATGTTATTAGCTTTATTGGAGTATGCATATAAATCTAGATATAATATGAACT</gDNA_template>
            <first_frame> R  F  F  V  H  G  N  A  L  F  L  L  S  S  I  V  F  H  V  S  N  L  N  L  L  T  D  R  L  W  K  Q  L  K  N  F  R  E  M  L  T  H  L  *  *  F  P  M  I  V  C  *  I  L  P  M  S  R  H  H  F  K  M  L  F  F  L  R  M  M  Y  Y  V  K  V  S  K  E  Y  L  I  *  S  L  *  V  P  L  S  I  A  N  I  S  F  L  *  M  I  C  *  N  S  S  L  Y  N  I  N  V  *  C  H  R  T  G  D  V  A  S  L  N  S  L  N  T  L  A  D  T  H  Q  H  *  *  G  R  *  F  F  S  V  L  N  I  F  I  K  L  H  L  F  N  V  I  S  K  *  V  L  P  L  K  K  D  C  K  F  T  H  L  Q  C  T  M  L  L  A  L  L  E  Y  A  Y  K  S  R  Y  N  M  N  </first_frame>
            <second_frame>  D  F  L  F  M  A  M  L  Y  F  S  C  H  P  *  S  F  M  F  L  I  *  T  Y  *  P  T  G  S  G  S  N  *  K  T  S  E  K  C  *  H  T  Y  S  N  S  Q  *  S  S  A  R  Y  C  R  *  A  D  T  T  S  R  C  F  S  S  C  G  *  C  I  T  S  R  C  P  R  N  I  *  Y  N  H  C  E  F  L  C  Q  *  P  T  S  L  F  F  K  *  Y  A  E  I  L  L  C  I  I  *  M  Y  N  V  I  V  L  V  M  L  L  H  *  I  P  *  T  H  L  R  T  L  T  N  T  D  K  G  D  D  F  F  L  Y  *  I  F  S  *  S  C  I  C  L  M  L  Y  Q  N  K  F  S  H  *  K  R  I  A  N  L  P  I  C  N  V  P  C  Y  *  L  Y  W  S  M  H  I  N  L  D  I  I  *  T </second_frame>
            <third_frame>   I  F  C  S  W  Q  C  F  I  S  P  V  I  H  S  L  S  C  F  *  F  E  L  I  D  R  Q  A  L  E  A  I  E  K  L  Q  R  N  V  D  T  L  I  V  I  P  N  D  R  L  L  D  I  A  D  E  Q  T  P  L  Q  D  A  F  L  L  A  D  D  V  L  R  Q  G  V  Q  G  I  S  D  I  I  T  V  S  S  F  V  N  S  Q  H  L  F  S  L  N  D  M  L  K  F  F  F  V  *  Y  K  C  I  M  S  S  Y  W  *  C  C  F  T  K  F  L  K  H  T  C  G  H  S  P  T  L  I  R  A  M  I  F  F  C  T  K  Y  F  H  K  V  A  S  V  *  C  Y  I  K  I  S  S  P  I  K  K  G  L  Q  I  Y  P  F  A  M  Y  H  V  I  S  F  I  G  V  C  I  *  I  *  I  *  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75805" stop="76062"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FELIDRQALEAIEKLQRNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITVSSFVNSQHLFSLNDMLKFFFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="87091" PGL_stop="82486"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87091" e_stop="86907"/>
            <exon e_start="85835" e_stop="85615"/>
            <exon e_start="84830" e_stop="84625"/>
            <exon e_start="84200" e_stop="84100"/>
            <exon e_start="83980" e_stop="83936"/>
            <exon e_start="82845" e_stop="82486"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87091" e_stop="86907" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86906" i_stop="85836" i_length="1071"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85835" e_stop="85615" e_length="221"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.988">
            <gDNA_intron_boundary i_start="85614" i_stop="84831" i_length="784"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84830" e_stop="84625" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="84624" i_stop="84201" i_length="424"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84200" e_stop="84100" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.937">
            <gDNA_intron_boundary i_start="84099" i_stop="83981" i_length="119"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83980" e_stop="83936" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="83935" i_stop="82846" i_length="1090"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="82845" e_stop="82486" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87091" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87064" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87055" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87051" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87049" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87049" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87047" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87045" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87044" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87043" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87042" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87042" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87041" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87041" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87041" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87040" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87035" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87025" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87024" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="86907"/>
              <exon start="85835" stop="85615"/>
              <exon start="84830" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84710" stop="84625"/>
              <exon start="84200" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84102" stop="84100"/>
              <exon start="83980" stop="83936"/>
              <exon start="82845" stop="82493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220608" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGTGGTTTCAATAATGACCAAATGCGCGTGTAGACAATAACGAAGAGGACAATGGAGCTGGACAAACTTTGCCGGTAAAGTTAGCGGCACGTCTTCTTTAAAATTATTCCGACTCGCCGTTTCTCTCTCCAAAATTCTCTCACAATTCCACCATCGCCACCGTGAATTCAGATCAGAAAGAG : GTAATGGCTTCTTCTGGAGATTCATGGATCCGGGAGTATAACGAAGGACTGAAACTCGCGGATGATATCACTAACATGATATCTGAAAGGAGTTCATTGCCTGCTTCGGGCCCAGAAGCACAGCGTCATTCATCCGCTATAAGGAGGAAGATTACTATTTTAGGAACTAGACTTGATAACTTACAGTCTATCCTGTCAAAGCTTCCTGGAAAGCAGCCTTT : GTCAGAGAAAGAGATGAACCGTCGCAAGGATATGCTTGCAAATTTAAAATCGAAAGTATCTCAAATGGCTTCCACATTGAACATGTCAAGCTTCGCGAATAGGGACAGTTTGCTTGGACCAGAAATAAAGCCTGTGGATGCTATGAGCAGAGCAACAGGTCTTGACAATAATGGCGTTGTCGGTCTTCAACGGCAAATTATGAAAG : AGCAAGATGAGGGCCTTGAGAGTCTGGAGGAGACAGTGATGAGCACTAAACATATAGCACTGGCAGTTAATGAAGAACTTGGCTTGCAAACAAGACTTATT : GATGACCTGGACGAACATGTTGATGTTACAGACTCAAGACTTCAG : CGGGTGCAGAGAAAGCTTGGAATTTTGAACAAACGCACAAAGGGTGGTTGCTCTTGCATGTGTATGCTTCTAGCGGTGCTTGGAATTGTCATTCTTGTTGTGGCAATATATATGTTGATTAAGTATCTGTAAATGCAAAAGAACAAGTACTTTGGAGTGTGTATGAGAAGTGTGTGTATTAGATATCGAACATCTCCTTCTGTTTCCTCCTGTGTAATCGATGTTTTCGTGATTGTACTCACATCAGTGTGTCGAGACAACCTTGAAGTCTTTTTCTCCACTTGATATGTTTCTATATGTAAAAAAGACGTCGAAAGCATTTTCCAAAGTCTATCAATATTTGAGTGAAACTAGTGTTAA</gDNA_template>
            <first_frame> K  S  G  F  N  N  D  Q  M  R  V  *  T  I  T  K  R  T  M  E  L  D  K  L  C  R  *  S  *  R  H  V  F  F  K  I  I  P  T  R  R  F  S  L  Q  N  S  L  T  I  P  P  S  P  P  *  I  Q  I  R  K  R :   *  W  L  L  L  E  I  H  G  S  G  S  I  T  K  D  *  N  S  R  M  I  S  L  T  *  Y  L  K  G  V  H  C  L  L  R  A  Q  K  H  S  V  I  H  P  L  *  G  G  R  L  L  F  *  E  L  D  L  I  T  Y  S  L  S  C  Q  S  F  L  E  S  S  L   : C  Q  R  K  R  *  T  V  A  R  I  C  L  Q  I  *  N  R  K  Y  L  K  W  L  P  H  *  T  C  Q  A  S  R  I  G  T  V  C  L  D  Q  K  *  S  L  W  M  L  *  A  E  Q  Q  V  L  T  I  M  A  L  S  V  F  N  G  K  L  *  K  :  S  K  M  R  A  L  R  V  W  R  R  Q  *  *  A  L  N  I  *  H  W  Q  L  M  K  N  L  A  C  K  Q  D  L  L :   M  T  W  T  N  M  L  M  L  Q  T  Q  D  F  S :   G  C  R  E  S  L  E  F  *  T  N  A  Q  R  V  V  A  L  A  C  V  C  F  *  R  C  L  E  L  S  F  L  L  W  Q  Y  I  C  *  L  S  I  C  K  C  K  R  T  S  T  L  E  C  V  *  E  V  C  V  L  D  I  E  H  L  L  L  F  P  P  V  *  S  M  F  S  *  L  Y  S  H  Q  C  V  E  T  T  L  K  S  F  S  P  L  D  M  F  L  Y  V  K  K  T  S  K  A  F  S  K  V  Y  Q  Y  L  S  E  T  S  V   </first_frame>
            <second_frame>  K  V  V  S  I  M  T  K  C  A  C  R  Q  *  R  R  G  Q  W  S  W  T  N  F  A  G  K  V  S  G  T  S  S  L  K  L  F  R  L  A  V  S  L  S  K  I  L  S  Q  F  H  H  R  H  R  E  F  R  S  E  R   : G  N  G  F  F  W  R  F  M  D  P  G  V  *  R  R  T  E  T  R  G  *  Y  H  *  H  D  I  *  K  E  F  I  A  C  F  G  P  R  S  T  A  S  F  I  R  Y  K  E  E  D  Y  Y  F  R  N  *  T  *  *  L  T  V  Y  P  V  K  A  S  W  K  A  A  F  :  V  R  E  R  D  E  P  S  Q  G  Y  A  C  K  F  K  I  E  S  I  S  N  G  F  H  I  E  H  V  K  L  R  E  *  G  Q  F  A  W  T  R  N  K  A  C  G  C  Y  E  Q  S  N  R  S  *  Q  *  W  R  C  R  S  S  T  A  N  Y  E  R :   A  R  *  G  P  *  E  S  G  G  D  S  D  E  H  *  T  Y  S  T  G  S  *  *  R  T  W  L  A  N  K  T  Y   : *  *  P  G  R  T  C  *  C  Y  R  L  K  T  S   : A  G  A  E  K  A  W  N  F  E  Q  T  H  K  G  W  L  L  L  H  V  Y  A  S  S  G  A  W  N  C  H  S  C  C  G  N  I  Y  V  D  *  V  S  V  N  A  K  E  Q  V  L  W  S  V  Y  E  K  C  V  Y  *  I  S  N  I  S  F  C  F  L  L  C  N  R  C  F  R  D  C  T  H  I  S  V  S  R  Q  P  *  S  L  F  L  H  L  I  C  F  Y  M  *  K  R  R  R  K  H  F  P  K  S  I  N  I  *  V  K  L  V  L  </second_frame>
            <third_frame>   K  W  F  Q  *  *  P  N  A  R  V  D  N  N  E  E  D  N  G  A  G  Q  T  L  P  V  K  L  A  A  R  L  L  *  N  Y  S  D  S  P  F  L  S  P  K  F  S  H  N  S  T  I  A  T  V  N  S  D  Q  K  E  :  V  M  A  S  S  G  D  S  W  I  R  E  Y  N  E  G  L  K  L  A  D  D  I  T  N  M  I  S  E  R  S  S  L  P  A  S  G  P  E  A  Q  R  H  S  S  A  I  R  R  K  I  T  I  L  G  T  R  L  D  N  L  Q  S  I  L  S  K  L  P  G  K  Q  P  L :   S  E  K  E  M  N  R  R  K  D  M  L  A  N  L  K  S  K  V  S  Q  M  A  S  T  L  N  M  S  S  F  A  N  R  D  S  L  L  G  P  E  I  K  P  V  D  A  M  S  R  A  T  G  L  D  N  N  G  V  V  G  L  Q  R  Q  I  M  K   : E  Q  D  E  G  L  E  S  L  E  E  T  V  M  S  T  K  H  I  A  L  A  V  N  E  E  L  G  L  Q  T  R  L  I  :  D  D  L  D  E  H  V  D  V  T  D  S  R  L  Q  :  R  V  Q  R  K  L  G  I  L  N  K  R  T  K  G  G  C  S  C  M  C  M  L  L  A  V  L  G  I  V  I  L  V  V  A  I  Y  M  L  I  K  Y  L  *  M  Q  K  N  K  Y  F  G  V  C  M  R  S  V  C  I  R  Y  R  T  S  P  S  V  S  S  C  V  I  D  V  F  V  I  V  L  T  S  V  C  R  D  N  L  E  V  F  F  S  T  *  Y  V  S  I  C  K  K  D  V  E  S  I  F  Q  S  L  S  I  F  E  *  N  *  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86987" stop="86907"/>
                    <exon start="85835" stop="85615"/>
                    <exon start="84830" stop="84625"/>
                    <exon start="84200" stop="84100"/>
                    <exon start="83980" stop="83936"/>
                    <exon start="82845" stop="82714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYSDSPFLSPKFSHNSTIATVNSDQKEVMASSGDSWIREYNEGLKLADDITNMISERSSLPASGPEAQRHSSAIRRKITILGTRLDNLQSILSKLPGKQPLSEKEMNRRKDMLANLKSKVSQMASTLNMSSFANRDSLLGPEIKPVDAMSRATGLDNNGVVGLQRQIMKEQDEGLESLEETVMSTKHIALAVNEELGLQTRLIDDLDEHVDVTDSRLQRVQRKLGILNKRTKGGCSCMCMLLAVLGIVILVVAIYMLIKYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="89000" PGL_stop="96103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89000" e_stop="89337"/>
            <exon e_start="92306" e_stop="92458"/>
            <exon e_start="93566" e_stop="93628"/>
            <exon e_start="93700" e_stop="93785"/>
            <exon e_start="94070" e_stop="94145"/>
            <exon e_start="94225" e_stop="94493"/>
            <exon e_start="94625" e_stop="94703"/>
            <exon e_start="95544" e_stop="96009"/>
            <exon e_start="96091" e_stop="96103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.435" e_score="1.000"/>
          <exon-only e_score="0.692"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89000" e_stop="89337" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92306" e_stop="92458" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93566" e_stop="93628" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93700" e_stop="93785" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="93786" i_stop="94069" i_length="284"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94070" e_stop="94145" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.986">
            <gDNA_intron_boundary i_start="94146" i_stop="94224" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="94225" e_stop="94493" e_length="269"/>
          </exon>
          <intron i_serial="6" don_prob="0.925" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94494" i_stop="94624" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94625" e_stop="94703" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.991">
            <gDNA_intron_boundary i_start="94704" i_stop="95543" i_length="840"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="95544" e_stop="96009" e_length="466"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.435">
            <gDNA_intron_boundary i_start="96010" i_stop="96090" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.692">
            <gDNA_exon_boundary e_start="96091" e_stop="96103" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89000" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93785"/>
              <exon start="94070" stop="94145"/>
              <exon start="94225" stop="94320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89004" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93785"/>
              <exon start="94070" stop="94085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89030" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93785"/>
              <exon start="94070" stop="94145"/>
              <exon start="94225" stop="94493"/>
              <exon start="94625" stop="94703"/>
              <exon start="95544" stop="95995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89040" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89062" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89076" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93785"/>
              <exon start="94070" stop="94134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89206" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93785"/>
              <exon start="94070" stop="94145"/>
              <exon start="94225" stop="94257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94362" stop="94493"/>
              <exon start="94625" stop="94703"/>
              <exon start="95544" stop="96007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="94493"/>
              <exon start="94625" stop="94703"/>
              <exon start="95544" stop="95993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95552" stop="96009"/>
              <exon start="96091" stop="96103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95592" stop="95886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAAAAAATGAAGTAAAACTAGAGAAAGCGGCGAGTCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT : ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG : GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG : GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAG : CTTATCCGCTCTTATTGAGAATAAGATATTCTCTGTTCATGGTGGTCTCTCTCCTACAATATCTACATTAGACCAG : ATTCGAACTATTGATCGGAAGCAAGAAGTTCCTCACGAGGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAGGACATCGTTGATGGATGGGGATTGAGTCCTCGTGGTGCAGGTTTCCTTTTTGGTGGCAGTGTTGTCACTTCATTTAACCATACAAATAACATAGACTACATATGCCGTGCACATCAGTTAGTAATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACAGTCTGGTCTGCTCCAAACTACTGTTACAG : ATGTGGTAATGTTGCAGCAATTCTTGAGCTAGACGAGAATCTTACTAAGCAGTTTCGTGTGTTTGAAGCTGCTCCTCAG : GAATCAAGAGGAGCACCTGCTAAAAAGCCTCCACCAGATTACTTCCTGTAAGACAACACAAATGATTCAATTTTTGCCATCAATATATCCATATTGTCGACAATATGGCTCTGTAGAGGAGATGCAGGAGTTGCTCTCACATGATTCATTTTGGTAGAAAAGCTTCTTGGTTTAACCGAAAGAATGGTACCATTGTTGGGGTTTCTAAGATCTGAATGCGTGTCGCCCATTTTGAAATCCCATACATGTTATTTTTCCTTGTAATGGTGGTGTGTGTAATAGAAATGGTGGGACATTGAAGTGATAGTTGCAATTATGAGGCAACTTCACTCTCCTGTAAAGGAGTTGTATACGACTTAAGTCGAGGACCCTTTTTTCAGCATCTTGTTACATCTGGACTTTGGTGAATCAGTAAATGTTTCTTGGTGTCATGTTGCATAATAACATGCACATTTTGTATGGTCAT : AAAATGAAACATA</gDNA_template>
            <first_frame> R  E  K  M  K  *  N  *  R  K  R  R  V  S  N  T  V  R  E  S  R  K  P  G  T  R  R  R  S  R  G  C  Y  Y  S  Y  A  L  Q  S  E  K  T  V  V  V  D  F  V  T  E  L  A  G  E  S  R  K  *  K  Q  H  R  V  R  R  C  Q  T  *  I  G  K  L  S  S  S  R  D  A  S  R  *  R  N  L  K  L  R  L  F  V  *  K  L  W  K  S  L  L  K  K  A  M  C  R  E  S  T  R  L  S  L :   Y  V  V  I  S  M  D  N  F  M  T  *  K  S  Y  L  K  W  E  V  I  A  Q  R  Q  I  T  C  F  S  E  I  L  L  I  E  D  F  T  P  L  R  H  F  F  F  Y  *  L  L  R :   *  D  I  P  I  G  S  L  L  S  E  V  T  M  R  A  A  R  S  H  R :   Y  M  D  S  M  M  S  A  Y  G  S  M  V  Q  *  M  F  G  D  I  A  R  I  Y  L  T  I  *   : A  Y  P  L  L  L  R  I  R  Y  S  L  F  M  V  V  S  L  L  Q  Y  L  H  *  T  R :   F  E  L  L  I  G  S  K  K  F  L  T  R  V  P  C  V  T  Y  Y  G  Q  I  Q  R  T  S  L  M  D  G  D  *  V  L  V  V  Q  V  S  F  L  V  A  V  L  S  L  H  L  T  I  Q  I  T  *  T  T  Y  A  V  H  I  S  *  *  W  K  D  I  N  G  C  S  I  I  R  *  L  Q  S  G  L  L  Q  T  T  V  T   : D  V  V  M  L  Q  Q  F  L  S  *  T  R  I  L  L  S  S  F  V  C  L  K  L  L  L  R :   N  Q  E  E  H  L  L  K  S  L  H  Q  I  T  S  C  K  T  T  Q  M  I  Q  F  L  P  S  I  Y  P  Y  C  R  Q  Y  G  S  V  E  E  M  Q  E  L  L  S  H  D  S  F  W  *  K  S  F  L  V  *  P  K  E  W  Y  H  C  W  G  F  *  D  L  N  A  C  R  P  F  *  N  P  I  H  V  I  F  P  C  N  G  G  V  C  N  R  N  G  G  T  L  K  *  *  L  Q  L  *  G  N  F  T  L  L  *  R  S  C  I  R  L  K  S  R  T  L  F  S  A  S  C  Y  I  W  T  L  V  N  Q  *  M  F  L  G  V  M  L  H  N  N  M  H  I  L  Y  G  H  :  K  M  K  H  </first_frame>
            <second_frame>  E  K  K  *  S  K  T  R  E  S  G  E  S  A  T  P  C  V  N  R  E  N  P  A  L  D  G  A  A  E  A  A  T  T  H  M  L  F  N  R  R  R  Q  *  *  *  I  L  L  R  S  S  P  V  N  R  G  S  E  S  N  T  E  F  E  D  V  R  P  R  *  A  N  *  A  A  Q  E  M  R  A  V  K  G  I  *  S  *  G  S  L  Y  E  S  Y  G  N  P  C  *  R  K  Q  C  A  E  S  R  R  A  C  H   : Y  M  W  *  Y  P  W  T  I  L  *  H  E  R  A  I  *  S  G  R  *  L  P  K  D  K  L  L  V  S  R  R  F  C  *  *  R  I  L  L  R  *  D  I  S  S  S  T  S  S  *   : G  E  I  S  R  S  D  H  S  Y  Q  R  *  P  *  E  P  P  D  H  T   : G  I  W  I  L  *  *  V  P  T  E  V  W  F  S  K  C  L  E  I  L  H  G  Y  I  *  L  F  K  :  L  I  R  S  Y  *  E  *  D  I  L  C  S  W  W  S  L  S  Y  N  I  Y  I  R  P   : D  S  N  Y  *  S  E  A  R  S  S  S  R  G  C  H  V  *  P  T  M  V  R  S  R  G  H  R  *  W  M  G  I  E  S  S  W  C  R  F  P  F  W  W  Q  C  C  H  F  I  *  P  Y  K  *  H  R  L  H  M  P  C  T  S  V  S  N  G  R  I  *  M  D  V  Q  *  S  D  S  Y  S  L  V  C  S  K  L  L  L  Q  :  M  W  *  C  C  S  N  S  *  A  R  R  E  S  Y  *  A  V  S  C  V  *  S  C  S  S   : G  I  K  R  S  T  C  *  K  A  S  T  R  L  L  P  V  R  Q  H  K  *  F  N  F  C  H  Q  Y  I  H  I  V  D  N  M  A  L  *  R  R  C  R  S  C  S  H  M  I  H  F  G  R  K  A  S  W  F  N  R  K  N  G  T  I  V  G  V  S  K  I  *  M  R  V  A  H  F  E  I  P  Y  M  L  F  F  L  V  M  V  V  C  V  I  E  M  V  G  H  *  S  D  S  C  N  Y  E  A  T  S  L  S  C  K  G  V  V  Y  D  L  S  R  G  P  F  F  Q  H  L  V  T  S  G  L  W  *  I  S  K  C  F  L  V  S  C  C  I  I  T  C  T  F  C  M  V  I :   K  *  N  I </second_frame>
            <third_frame>   R  K  N  E  V  K  L  E  K  A  A  S  Q  Q  H  R  A  *  I  A  K  T  R  H  S  T  A  Q  Q  R  L  L  L  L  I  C  S  S  I  G  E  D  S  S  S  R  F  C  Y  G  A  R  R  *  I  E  E  V  K  A  T  P  S  S  K  M  S  D  L  D  R  Q  I  E  Q  L  K  R  C  E  P  L  K  E  S  E  V  K  A  L  C  M  K  A  M  E  I  L  V  E  E  S  N  V  Q  R  V  D  A  P  V  T  :  I  C  G  D  I  H  G  Q  F  Y  D  M  K  E  L  F  K  V  G  G  D  C  P  K  T  N  Y  L  F  L  G  D  F  V  D  R  G  F  Y  S  V  E  T  F  L  L  L  L  A  L  K  :  V  R  Y  P  D  R  I  T  L  I  R  G  N  H  E  S  R  Q  I  T  Q  :  V  Y  G  F  Y  D  E  C  L  R  K  Y  G  S  V  N  V  W  R  Y  C  T  D  I  F  D  Y  L  S :   L  S  A  L  I  E  N  K  I  F  S  V  H  G  G  L  S  P  T  I  S  T  L  D  Q  :  I  R  T  I  D  R  K  Q  E  V  P  H  E  G  A  M  C  D  L  L  W  S  D  P  E  D  I  V  D  G  W  G  L  S  P  R  G  A  G  F  L  F  G  G  S  V  V  T  S  F  N  H  T  N  N  I  D  Y  I  C  R  A  H  Q  L  V  M  E  G  Y  K  W  M  F  N  N  Q  I  V  T  V  W  S  A  P  N  Y  C  Y  R :   C  G  N  V  A  A  I  L  E  L  D  E  N  L  T  K  Q  F  R  V  F  E  A  A  P  Q  :  E  S  R  G  A  P  A  K  K  P  P  P  D  Y  F  L  *  D  N  T  N  D  S  I  F  A  I  N  I  S  I  L  S  T  I  W  L  C  R  G  D  A  G  V  A  L  T  *  F  I  L  V  E  K  L  L  G  L  T  E  R  M  V  P  L  L  G  F  L  R  S  E  C  V  S  P  I  L  K  S  H  T  C  Y  F  S  L  *  W  W  C  V  *  *  K  W  W  D  I  E  V  I  V  A  I  M  R  Q  L  H  S  P  V  K  E  L  Y  T  T  *  V  E  D  P  F  F  S  I  L  L  H  L  D  F  G  E  S  V  N  V  S  W  C  H  V  A  *  *  H  A  H  F  V  W  S   : *  N  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89164" stop="89337"/>
                    <exon start="92306" stop="92458"/>
                    <exon start="93566" stop="93628"/>
                    <exon start="93700" stop="93785"/>
                    <exon start="94070" stop="94145"/>
                    <exon start="94225" stop="94493"/>
                    <exon start="94625" stop="94703"/>
                    <exon start="95544" stop="95594"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEEVKATPSSKMSDLDRQIEQLKRCEPLKESEVKALCMKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPTISTLDQIRTIDRKQEVPHEGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHTNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDENLTKQFRVFEAAPQESRGAPAKKPPPDYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89037" e_stop="89337"/>
            <exon e_start="92306" e_stop="92458"/>
            <exon e_start="93566" e_stop="93628"/>
            <exon e_start="93700" e_stop="93786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89037" e_stop="89337" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="89338" i_stop="92305" i_length="2968"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92306" e_stop="92458" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92459" i_stop="93565" i_length="1107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93566" e_stop="93628" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="93629" i_stop="93699" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93700" e_stop="93786" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89037" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89040" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89062" stop="89337"/>
              <exon start="92306" stop="92458"/>
              <exon start="93566" stop="93628"/>
              <exon start="93700" stop="93756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCAACACCGTGCGTGAATCGCGAAAACCCGGCACTCGACGGCGCAGCAGAGGCTGCTACTACTCATATGCTCTTCAATCGGAGAAGACAGTAGTAGTAGATTTTGTTACGGAGCTCGCCGGTGAATCGAGGAAGTGAAAGCAACACCGAGTTCGAAGATGTCAGACCTAGATAGGCAAATTGAGCAGCTCAAGAGATGCGAGCCGTTAAAGGAATCTGAAGTTAAGGCTCTTTGTATGAAAGCTATGGAAATCCTTGTTGAAGAAAGCAATGTGCAGAGAGTCGACGCGCCTGTCACT : ATATGTGGTGATATCCATGGACAATTTTATGACATGAAAGAGCTATTTAAAGTGGGAGGTGATTGCCCAAAGACAAATTACTTGTTTCTCGGAGATTTTGTTGATAGAGGATTTTACTCCGTTGAGACATTTCTTCTTCTACTAGCTCTTAAG : GTGAGATATCCCGATCGGATCACTCTTATCAGAGGTAACCATGAGAGCCGCCAGATCACACAG : GTATATGGATTCTATGATGAGTGCCTACGGAAGTATGGTTCAGTAAATGTTTGGAGATATTGCACGGATATATTTGACTATTTAAGG</gDNA_template>
            <first_frame> S  A  T  P  C  V  N  R  E  N  P  A  L  D  G  A  A  E  A  A  T  T  H  M  L  F  N  R  R  R  Q  *  *  *  I  L  L  R  S  S  P  V  N  R  G  S  E  S  N  T  E  F  E  D  V  R  P  R  *  A  N  *  A  A  Q  E  M  R  A  V  K  G  I  *  S  *  G  S  L  Y  E  S  Y  G  N  P  C  *  R  K  Q  C  A  E  S  R  R  A  C  H   : Y  M  W  *  Y  P  W  T  I  L  *  H  E  R  A  I  *  S  G  R  *  L  P  K  D  K  L  L  V  S  R  R  F  C  *  *  R  I  L  L  R  *  D  I  S  S  S  T  S  S  *   : G  E  I  S  R  S  D  H  S  Y  Q  R  *  P  *  E  P  P  D  H  T   : G  I  W  I  L  *  *  V  P  T  E  V  W  F  S  K  C  L  E  I  L  H  G  Y  I  *  L  F  K  </first_frame>
            <second_frame>  Q  Q  H  R  A  *  I  A  K  T  R  H  S  T  A  Q  Q  R  L  L  L  L  I  C  S  S  I  G  E  D  S  S  S  R  F  C  Y  G  A  R  R  *  I  E  E  V  K  A  T  P  S  S  K  M  S  D  L  D  R  Q  I  E  Q  L  K  R  C  E  P  L  K  E  S  E  V  K  A  L  C  M  K  A  M  E  I  L  V  E  E  S  N  V  Q  R  V  D  A  P  V  T  :  I  C  G  D  I  H  G  Q  F  Y  D  M  K  E  L  F  K  V  G  G  D  C  P  K  T  N  Y  L  F  L  G  D  F  V  D  R  G  F  Y  S  V  E  T  F  L  L  L  L  A  L  K  :  V  R  Y  P  D  R  I  T  L  I  R  G  N  H  E  S  R  Q  I  T  Q  :  V  Y  G  F  Y  D  E  C  L  R  K  Y  G  S  V  N  V  W  R  Y  C  T  D  I  F  D  Y  L  R </second_frame>
            <third_frame>   S  N  T  V  R  E  S  R  K  P  G  T  R  R  R  S  R  G  C  Y  Y  S  Y  A  L  Q  S  E  K  T  V  V  V  D  F  V  T  E  L  A  G  E  S  R  K  *  K  Q  H  R  V  R  R  C  Q  T  *  I  G  K  L  S  S  S  R  D  A  S  R  *  R  N  L  K  L  R  L  F  V  *  K  L  W  K  S  L  L  K  K  A  M  C  R  E  S  T  R  L  S  L :   Y  V  V  I  S  M  D  N  F  M  T  *  K  S  Y  L  K  W  E  V  I  A  Q  R  Q  I  T  C  F  S  E  I  L  L  I  E  D  F  T  P  L  R  H  F  F  F  Y  *  L  L  R :   *  D  I  P  I  G  S  L  L  S  E  V  T  M  R  A  A  R  S  H  R :   Y  M  D  S  M  M  S  A  Y  G  S  M  V  Q  *  M  F  G  D  I  A  R  I  Y  L  T  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89164" stop="89337"/>
                    <exon start="92306" stop="92458"/>
                    <exon start="93566" stop="93628"/>
                    <exon start="93700" stop="93786"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEEVKATPSSKMSDLDRQIEQLKRCEPLKESEVKALCMKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="96776" PGL_stop="97283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96776" e_stop="97283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96776" e_stop="97283" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96776" stop="97234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96790" stop="97091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96792" stop="97148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96798" stop="97204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96803" stop="97283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96804" stop="97162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96811" stop="97175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96837" stop="97214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96874" stop="97283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAATCAAAGCTCACTCTCTAATCTTCAACTTCATCCATCTCAATTTCTTCAATAAAATCCAAAAAATTCTCAATCTACTGAGTCTGCCCCTCAATTAATTCCATGGCAGGCTCAGTTTCCTTCTTCGTTTTTCTATCTTTACTCCTTTTTTCAAGTATCTGTGTTGAATCCGATGGAGAAGGGTACATATCATTGGATATATCAAATAAAGGTCTTGATTTTATGAAGGAATTTCTAGTACAAATGGCGGAGACTTCATTAGTTCCACTTGACCTACCTAAAATTGAGAAATCAAAGCATATTCCTATTATTGGTACAGTTCATATGGTTCTTTCGAATATCAGTATTGATAATATTCGTGTGATTTCTTCGACTGTGAAAGCTGGTGATACGGGTATTGTTATTAGTGTTTCTGGTGCTTATGCGAATATGACCATGAATTGGGAATATTCATATTCGAATTGGTGGCTTCCTGTTCCTATTGCGGATAATGGAAAAGCTTCTA</gDNA_template>
            <first_frame> F  K  S  K  L  T  L  *  S  S  T  S  S  I  S  I  S  S  I  K  S  K  K  F  S  I  Y  *  V  C  P  S  I  N  S  M  A  G  S  V  S  F  F  V  F  L  S  L  L  L  F  S  S  I  C  V  E  S  D  G  E  G  Y  I  S  L  D  I  S  N  K  G  L  D  F  M  K  E  F  L  V  Q  M  A  E  T  S  L  V  P  L  D  L  P  K  I  E  K  S  K  H  I  P  I  I  G  T  V  H  M  V  L  S  N  I  S  I  D  N  I  R  V  I  S  S  T  V  K  A  G  D  T  G  I  V  I  S  V  S  G  A  Y  A  N  M  T  M  N  W  E  Y  S  Y  S  N  W  W  L  P  V  P  I  A  D  N  G  K  A  S  </first_frame>
            <second_frame>  S  N  Q  S  S  L  S  N  L  Q  L  H  P  S  Q  F  L  Q  *  N  P  K  N  S  Q  S  T  E  S  A  P  Q  L  I  P  W  Q  A  Q  F  P  S  S  F  F  Y  L  Y  S  F  F  Q  V  S  V  L  N  P  M  E  K  G  T  Y  H  W  I  Y  Q  I  K  V  L  I  L  *  R  N  F  *  Y  K  W  R  R  L  H  *  F  H  L  T  Y  L  K  L  R  N  Q  S  I  F  L  L  L  V  Q  F  I  W  F  F  R  I  S  V  L  I  I  F  V  *  F  L  R  L  *  K  L  V  I  R  V  L  L  L  V  F  L  V  L  M  R  I  *  P  *  I  G  N  I  H  I  R  I  G  G  F  L  F  L  L  R  I  M  E  K  L  L </second_frame>
            <third_frame>   Q  I  K  A  H  S  L  I  F  N  F  I  H  L  N  F  F  N  K  I  Q  K  I  L  N  L  L  S  L  P  L  N  *  F  H  G  R  L  S  F  L  L  R  F  S  I  F  T  P  F  F  K  Y  L  C  *  I  R  W  R  R  V  H  I  I  G  Y  I  K  *  R  S  *  F  Y  E  G  I  S  S  T  N  G  G  D  F  I  S  S  T  *  P  T  *  N  *  E  I  K  A  Y  S  Y  Y  W  Y  S  S  Y  G  S  F  E  Y  Q  Y  *  *  Y  S  C  D  F  F  D  C  E  S  W  *  Y  G  Y  C  Y  *  C  F  W  C  L  C  E  Y  D  H  E  L  G  I  F  I  F  E  L  V  A  S  C  S  Y  C  G  *  W  K  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0061J13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96860" stop="97282"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCPSINSMAGSVSFFVFLSLLLFSSICVESDGEGYISLDISNKGLDFMKEFLVQMAETSLVPLDLPKIEKSKHIPIIGTVHMVLSNISIDNIRVISSTVKAGDTGIVISVSGAYANMTMNWEYSYSNWWLPVPIADNGKAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 373 chains have been computed
$ 
$ memory statistics:
$ 1291152 bytes spliced alignments in total
$ 162 spliced alignments have been stored
$ 7970 bytes was the average size of a spliced alignment
$ 31584 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1662 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 575 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 07:58:21
-->
