<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-11-22 05:08:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320379" ref_strand="+" ref_description="SGN-E320379 [cTOB-22-E20]">
      <seq>ttttgcactatggcagcttcaaactcttcatttgatcagacatcagctgtagcagcagaggctaagagtggggaagatttctcagttcatgtgttctcttcctccgccgagttagttgagaagttgcacgagaagtggaattcagtgaagcagcaaccttatccggctatgtattctagtgtctatggtggaatcattcttgaaccagcaatgatggttattccaatggatgatcacatggtgcatcgaggacatggcgtctttgacacagctattatttttgatggctatctgtacgaattggatgtccacattaaccgcttccttagatcagcatccaaagcaaggatcgcgtctccatttacattttcagaacttaaaagcattcttattcaactttctgcagcatcaaagtgcaggaaaggcactctgagatattggttgagtgcagggcctgggaacttcttactctccccagctaaatgcccgacatctgcattctatgctgtggtgattgatgaagatttcgcacaatgcaaagaaggtgtaaaagtgataacttctacgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="11479" stop="8819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11179" g_stop="11134" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11133" i_stop="11044" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11043" g_stop="10979" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="111" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10978" i_stop="10024" i_length="955">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10023" g_stop="9848" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="287" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9847" i_stop="9404" i_length="444">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9403" g_stop="9119" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="572" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E320379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11179" e_stop="11134"/>
          <exon e_start="11043" e_stop="10979"/>
          <exon e_start="10023" e_stop="9848"/>
          <exon e_start="9403" e_stop="9119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCACTATGGCAGCTTCAAACTCTTCATTTGATCAGACATCAGGTACTTTTTTTTTCTTTAAGTTTTTAATAAAATGTCAACAAATAATTTGCTTTTTGGTGTTTGTGATGTGTTGTTCTTCCTGAGAAGCAGCTGTAGCAGCAGAGGCTAAGAGTGGGGAAGATTTCTCAGTTCATGTGTTCTCTTCCTCCGCCGAGGTAAAAATTATTAAATCCCTCTTTAACTTTATTTTTTTCATGATATCAGAGTCGGGTTCATCTGTTTGGGCTTCGAGTCCACACTCCAATTGGGCTGGGGTGTGAAGGGGTGTTAAGAGTCTCATTGGGGAATGGAATAGTTGTTTGCATATATGGATTTGGCAAGCCTACTCCGGCTGACTTTTGGGATTGAGTTAGGTTCAAATGTCATATTTTTACAATCTTTAGCTTTACTAGTTAACGTTGAAATAGGGATTAAAAGGAAAAATAGTAAGAATAGAATATTGAAAGAGTTGATAGATAATAGTTGCATGATACAACAGATGAGGGAGAATTGGTTCAATTGGTTCAAGAACTAGTATAGTGTGACGTCCATGGCGGAGTGCGGGCTGACTAGAAGGGGTAAAAAAGGAGGACTGACAGACTTTTAGGCTATCACGCTTTTGAAGAAGGGGTGCATTTACACATCAGCCAAATTCACATCGGAATGAGAGAGGAAAGTTAAGGGCTTTTCATGGTATAACCCGAGTTCACATGGTACACACGCTTTTGGGCTCAATGATTGGTATCATAAGGGACAAATTTGTGAGGTATGTTGGGCCAAAGTGGACAATACGTATCATGAGCTTGAACTCTGACATATAGTTATGGCAAACTCTAGTATAGTTGTGTGCTCCAAAACATGTTTGAGTATAAAATATATGTAGTCCACCGAACTTGATTGCTGCCCAACAAACTTAGTATTGATTCTTGGTACTTTTTTACAGTGCTCTTTTTCTCAAATTTAAGCTAGGGTTGACTCGTGTTTAAGAGTTAAAAGTTAAAATATCTAAAAGCGAAAGAAAATGAATCAAAGAAATTCCCCTGTATGTGCAATTTTTTGACTATTGTCATTGACAGTCATCCACATTTTTAGTGCATTATGAGTTGAGTTAGATGTTTTTTGCTGAAACAGTTAGTTGAGAAGTTGCACGAGAAGTGGAATTCAGTGAAGCAGCAACCTTATCCGGCTATGTATTCTAGTGTCTATGGTGGAATCATTCTTGAACCAGCAATGATGGTTATTCCAATGGATGATCACATGGTGCATCGAGGACATGGCGTCTTTGACACAGCTATTATTTTTGATGGGTATGAATCTAGTCTTGTTCCTTTAAAATATAATTTGTGATTTGATCTCTGAAAGTATCAAGTTTATGTTAAGACCCCGTGAATAACGTGCTTCATTTCCTATCAACTCCGATGTACAATGCATTCCCCTATAAGTCAACCCCCTCCTCCCCAACACAACAACCCAGTGTAATCCCACAAGTGGAGTCTGGGGAGCATAGTGTATACCTTGGGAGGTAGAGAGATTGTTTCCTATAGACCCTCGGTTCAAGGACTCCCCAACAAAAAAAGTAAAAAAAACAATGTGCCTATCATTAAGTAGCGATAATATGGAAGTATATGCTAAAATCATTTTACGTATCATGTATCCGTAGTGTTACTAAAGTAAGAGAACCTCTACCAGAGCTAAGATCCTAAGCTATAAGTCTATGGTTGATTCAGCTACTCTCTGGTTTTCTAATGCAGCTATCTGTACGAATTGGATGTCCACATTAACCGCTTCCTTAGATCAGCATCCAAAGCAAGGATCGCGTCTCCATTTACATTTTCAGAACTTAAAAGCATTCTTATTCAACTTTCTGCAGCATCAAAGTGCAGGAAAGGCACTCTGAGATATTGGTTGAGTGCAGGGCCTGGGAACTTCTTACTCTCCCCAGCTAAATGCCCGACATCTGCATTCTATGCTGTGGTGATTGATGAAGATTTCGCACAATGCAAAGAAGGTGTAAAAGTGATAACTTCTACGATCCC</genome_strand>
        <mrna_strand>TTTTGCACTATGGCAGCTTCAAACTCTTCATTTGATCAGACATCAG..........................................................................................CTGTAGCAGCAGAGGCTAAGAGTGGGGAAGATTTCTCAGTTCATGTGTTCTCTTCCTCCGCCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTGAGAAGTTGCACGAGAAGTGGAATTCAGTGAAGCAGCAACCTTATCCGGCTATGTATTCTAGTGTCTATGGTGGAATCATTCTTGAACCAGCAATGATGGTTATTCCAATGGATGATCACATGGTGCATCGAGGACATGGCGTCTTTGACACAGCTATTATTTTTGATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTGTACGAATTGGATGTCCACATTAACCGCTTCCTTAGATCAGCATCCAAAGCAAGGATCGCGTCTCCATTTACATTTTCAGAACTTAAAAGCATTCTTATTCAACTTTCTGCAGCATCAAAGTGCAGGAAAGGCACTCTGAGATATTGGTTGAGTGCAGGGCCTGGGAACTTCTTACTCTCCCCAGCTAAATGCCCGACATCTGCATTCTATGCTGTGGTGATTGATGAAGATTTCGCACAATGCAAAGAAGGTGTAAAAGTGATAACTTCTACGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549283" ref_strand="+" ref_description="SGN-E549283 [TUS-68-P21]">
      <seq>aattaccaaggcaaaaatatcttgggccttctaaactttctcctctgtgctgtgctgacgcattttgttgaaacttgaattcttgctttgctctattcttccttcttgtttgttgctgaaatttatcagctgagttcttctttcttgagagaattggggaattatcaattcttggaaaattagagaaagctggagtcttgctgctaatttacctacagcatatactaggcgatgttttcaccttcaatttgctttccaacaacaattcttcaaattcagccagataacacaagtcgcttcagaacccacaaatgtaaaagctatactgatgacagaaaacttccctgtttctctttcaaagacccatcttcctcagctcgttttgatgtttctgcaagtttttgtagagacaatgaattagtttgtcaattggaagttccaggtgataaaatttgttcagtgaatagttttgtggctgattcaagtttgcttggtcgtttgcttcaatctagttctagtttaaaagaagttaaaatacttcatgcgattgtattaaagtgtttgaggagcagtactatatttgttgagaataatttgattagtgtgttggntgaaatttggggcgtttggatgacgctcgtaaggtgttcgatcatatgcctgagaggaatgtggtttcttggactgctatgcttaatgggtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="11431" stop="12734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11730" g_stop="12434" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E549283" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11730" e_stop="12434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACGAGGCAAAAATATCTTGGGCCTTTTAAACTTTCTCCTCTGTGCTGTGCTGACGCATTTTGTTGAAACTTGAATTCTTGCTTTGTTCTATTCTTCCTTCTTGTTTGTTGCTGAAATTTATCAGCTGAGTTCTTCTTTCTTGAGAGAATTGGGGAATTCTCAATTCTTGGAAAATTAGAGAAAGCTGGAGTCTTGCTGCTAATTTACCAACAGCATATACTAGGCGATGTTTTCACCTTCAATTTGCTTTCCAACAACAATTCTTCAAATTCAGCCAGATAACAGAAGTCGGTTCAGAACCCACAAATGTAAAAGCTATACTGATGACAGAAAACTTCCCTGTTTCTCTTTCAAAGACCCATCTTCCTCAGCTCGTTTTGATGTTTCTGCAAGTTTTTGTAGAGACAATGAATTAGTTTGTCAATTGGAAGTTCCAGGTGATAAAATTTGTTCAGTGAATAGTTTTGTGGCTGATTCAAGTTTGCTTGGTCGTTTGCTTCAATCTAGTTCTAGTTTAAAAGAAGTTAAAATACTTCATGCGATTGTTTTAAAGTGTTTGAGGAGCAGTACTATATTTGTTGAGAATAATTTGATTAGTGTGTTGG-TGAAATTT-GGGCGTTTGGATGATGCTCGTAAGGTGTTCGATCATATGCTCGAGAGGAATGTGGTTTCTTGGACTGCTATGCTTAATGGGTATTTG</genome_strand>
        <mrna_strand>AATTACCAAGGCAAAAATATCTTGGGCCTTCTAAACTTTCTCCTCTGTGCTGTGCTGACGCATTTTGTTGAAACTTGAATTCTTGCTTTGCTCTATTCTTCCTTCTTGTTTGTTGCTGAAATTTATCAGCTGAGTTCTTCTTTCTTGAGAGAATTGGGGAATTATCAATTCTTGGAAAATTAGAGAAAGCTGGAGTCTTGCTGCTAATTTACCTACAGCATATACTAGGCGATGTTTTCACCTTCAATTTGCTTTCCAACAACAATTCTTCAAATTCAGCCAGATAACACAAGTCGCTTCAGAACCCACAAATGTAAAAGCTATACTGATGACAGAAAACTTCCCTGTTTCTCTTTCAAAGACCCATCTTCCTCAGCTCGTTTTGATGTTTCTGCAAGTTTTTGTAGAGACAATGAATTAGTTTGTCAATTGGAAGTTCCAGGTGATAAAATTTGTTCAGTGAATAGTTTTGTGGCTGATTCAAGTTTGCTTGGTCGTTTGCTTCAATCTAGTTCTAGTTTAAAAGAAGTTAAAATACTTCATGCGATTGTATTAAAGTGTTTGAGGAGCAGTACTATATTTGTTGAGAATAATTTGATTAGTGTGTTGGNTGAAATTTGGGGCGTTTGGATGACGCTCGTAAGGTGTTCGATCATATGCCTGAGAGGAATGTGGTTTCTTGGACTGCTATGCTTAATGGGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359147" ref_strand="+" ref_description="SGN-E359147 [cLHT-11-C19]">
      <seq>attaccaaggcaaaaatatcttgggccttctaaactttctcctctgtgctgtgctgacgcattttgttgaaacttgaattcttgctttgctctattcttccttcttgtttgttgctgaaatttatcagctgagttcttctttcttgagagaattggggaattatcaattcttggaaaattagagaaagctggagtcttgctgctaatttacctacagcatatactaggcgatgttttcaccttcaatttgctttccaacaacaattcttcaaattcagccagataacacaagtcgcttcagaacccacaaatgtaaaagctatactgatgacagaaaacttccctgtttctctttcaaagacccatcttcctcagctcgttttgatgtttctgcaagtttttgtagagacaatgaattagtttgtcaattggaagttccaggtgataaaatttgttcagtgaatacttttgtggctgattcaagtttgcttggtcgtttgcttcaatctagttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="11433" stop="12546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11731" g_stop="12246" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E359147" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11731" e_stop="12246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACGAGGCAAAAATATCTTGGGCCTTTTAAACTTTCTCCTCTGTGCTGTGCTGACGCATTTTGTTGAAACTTGAATTCTTGCTTTGTTCTATTCTTCCTTCTTGTTTGTTGCTGAAATTTATCAGCTGAGTTCTTCTTTCTTGAGAGAATTGGGGAATTCTCAATTCTTGGAAAATTAGAGAAAGCTGGAGTCTTGCTGCTAATTTACCAACAGCATATACTAGGCGATGTTTTCACCTTCAATTTGCTTTCCAACAACAATTCTTCAAATTCAGCCAGATAACAGAAGTCGGTTCAGAACCCACAAATGTAAAAGCTATACTGATGACAGAAAACTTCCCTGTTTCTCTTTCAAAGACCCATCTTCCTCAGCTCGTTTTGATGTTTCTGCAAGTTTTTGTAGAGACAATGAATTAGTTTGTCAATTGGAAGTTCCAGGTGATAAAATTTGTTCAGTGAATAGTTTTGTGGCTGATTCAAGTTTGCTTGGTCGTTTGCTTCAATCTAGTTCTA</genome_strand>
        <mrna_strand>ATTACCAAGGCAAAAATATCTTGGGCCTTCTAAACTTTCTCCTCTGTGCTGTGCTGACGCATTTTGTTGAAACTTGAATTCTTGCTTTGCTCTATTCTTCCTTCTTGTTTGTTGCTGAAATTTATCAGCTGAGTTCTTCTTTCTTGAGAGAATTGGGGAATTATCAATTCTTGGAAAATTAGAGAAAGCTGGAGTCTTGCTGCTAATTTACCTACAGCATATACTAGGCGATGTTTTCACCTTCAATTTGCTTTCCAACAACAATTCTTCAAATTCAGCCAGATAACACAAGTCGCTTCAGAACCCACAAATGTAAAAGCTATACTGATGACAGAAAACTTCCCTGTTTCTCTTTCAAAGACCCATCTTCCTCAGCTCGTTTTGATGTTTCTGCAAGTTTTTGTAGAGACAATGAATTAGTTTGTCAATTGGAAGTTCCAGGTGATAAAATTTGTTCAGTGAATACTTTTGTGGCTGATTCAAGTTTGCTTGGTCGTTTGCTTCAATCTAGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318578" ref_strand="+" ref_description="SGN-E318578 [cTOB-9-K7]">
      <seq>acttctttttaacttgaacttgatggaagcaaacgaccaagcaaacttgaatcaggcacataactattcactgaacaaattttatcacctggaacttccaattgacaaactaattcattgtctctacaaaaacttgcagaaacatcataacgagctgaggaagatgggtctttgaaagagaatcagggaagttgtctgtcatcaatatagctcttacatttgtgggttctgaaccgacttacgggatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="12559" stop="11717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12259" g_stop="12007" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E318578" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12259" e_stop="12007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTTTAAACTAGAACTAGATTGAAGCAAACGACCAAGCAAACTTGAATCAGCCACAAAACTATTCACTGAACAAATTTTATCACCTGGAACTTCCAATTGACAAACTAATTCATTGTCTCTACAAAAACTTGCAGAAACATCAAAACGAGCTGAGGAAGATGGGTCTTTGAAAGAGAAACAGGGAAGTTTTCTGTCATCAGTATAGCTTTTACATTTGTGGGTTCTGAACCGACTTCTGTTATCTGGCT</genome_strand>
        <mrna_strand>ACTTCTTTTTAACTTGAACTTGATGGAAGCAAACGACCAAGCAAACTTGAATCAGGCACATAACTATTCACTGAACAAATTTTATCACCTGGAACTTCCAATTGACAAACTAATTCATTGTCTCTACAAAAACTTGCAGAAACATCATAACGAGCTGAGGAAGATGGGTCTTTGAAAGAGAATCAGGGAAGTTGTCTGTCATCAATATAGCTCTTACATTTGTGGGTTCTGAACCGACTTACGGGATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545902" ref_strand="+" ref_description="SGN-E545902 [TUS-68-P21](-)">
      <seq>tgtgcaaagctggaagatatcgagagagggaagctgatccattcctctataagcaagacacctgctctgtccaatgtgtttgtgggcagtgcattgatcaatatgtatgcaaaatgtggacatcttcctgaggcaattcaaatatttgataacatgcccgagaagaatttggtttcttggaaggcgatgattgttgcttatgctaaaaacggaaactgtggagaggcattgaagctcatgtatcgtatgcaagtagagggcattgaggtggatgattatatcctcgctactgttctcacagcatgcggagaatataaggaaactatcaagtctaaatcgaagtatttcttgcatccaaatagttctataacctaaacagatatgagtctcctcaagaagtttcagcgaaatacaataacatatccagtgtaaatgatgatttcgtcatgtctcaatgacagctgaactctgagtgcttaatgttagagtctggttgatagctattcgtcatcggcttacttctggaccatgatggacatgtctatagcccctgcctcgccagataaagaatgaggtacagtttatcggactctgcttttagaggtccataatattcgaacgttgtatcttctaacctcagtgatactctgtattatacgtaggttaggtccctacgactgcgtattgtcatattaagatcatgtatacttgaactttttcttagcgaagtgataaagaaaaggttataacaacaactatgtatactaaatatttgaatgttaaaaatatactagtatcattcatgatgtcttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="13140" stop="14587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13440" g_stop="14079" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14080" i_stop="14111" i_length="32">
            <donor d_prob="0.328" d_score="0.94"/>
            <acceptor a_prob="0.630" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14112" g_stop="14299" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="828" r_length="189" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E545902" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13440" e_stop="14079"/>
          <exon e_start="14112" e_stop="14299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGTTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGTTCATAGCTA-T-GTCATCGGCTTACTTCTGGACCATGATGGACATGTCTAGTAGCCCCTGCCTCGCCTGATAAAGAATGAGGTACAATTTATCGGACTGTGCTTTTAGAGGTCCATCATATTTGAACGTTGTATCTTCTAACCTCAGTGATACTCTGTGTTGTATCTTCTAACCTCAG-TGATACTCTGTATTATACGTA-GTTAGGTCCCTACGACCGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGTGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTGTACTAGATATTTGAATGTTAAAAACATACTAGTAACATTCATGATTGTCTTCAAATTTTTAGCTAAA</genome_strand>
        <mrna_strand>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCCGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGAAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGCATTGAGGTGGATGATTATATCCTCGCTACTGTTCTCACAGCATGCGGAGAATATAAGGAAACTATCAAGTCTAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGTTTCAGCGAAATACAATAACATATCCAGTGTAAATGATGATTTCG-TCATGTCTCAATGACAGCTGAACTCTGAGTGCTTAATGTT-AGAGTCTGGTTGATAGCTATTCGTCATCGGCTTACTTCTGGACCATGATGGACATGTCTA-TAGCCCCTGCCTCGCCAGATAAAGAATGAGGTACAGTTTATCGGACTCTGCTTTTAGAGGTCCATAATATTCGAACGTTGTATCTTCTAACCTCA................................GTGATACTCTGTATTATACGTAGGTTAGGTCCCTACGACTGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGCGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTATACTAAATATTTGAATGTTAAAAATATACTAGTATCATTCATGA-TGTCTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253157" ref_strand="+" ref_description="SGN-E253157 [cLEG-26-K5]">
      <seq>tcctctataagcaagacacctgctctgtccaatgtgtttgtgggcagtgcattgatcaatatgtatgcaaaatgtggacatcttcctgaggcaattcaaatatttgataacatgcctgagaagaatttggtttcttggaaggcgatgattgttgcttatgctaaaaacgggaactgtggagaggcattgaagctcatgtatcgtatgcaagtagagggtattgaggtggatgattatatccttgctactgttctcacagcatgtggagaatataaggaaactatcaagtccaaatcgaagtatttcttgcatccaaatagttctataacctaaacagatatgagtctcctcaagaagcttcagcgaaatacaacaacatatccagtgtaaatgatggtttcggtcatgtctcaatgacagctgaactctgagcgtttcatgttaagagtctggatcatagctatgtcatcggcttacttctggaccatgatggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="13182" stop="14279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13482" g_stop="13979" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E253157" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13482" e_stop="13979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGTTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGTTCATAGCTATGTCATCGGCTTACTTCTGGACCATGATGGACATG</genome_strand>
        <mrna_strand>TCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGGTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGATCATAGCTATGTCATCGGCTTACTTCTGGACCATGATGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330460" ref_strand="+" ref_description="SGN-E330460 [cTOD-4-L13]">
      <seq>tctcatctttttcctcaccgtctgcaacatcttttttctctctctctgatacactaacaatggcggaagagtactctgtggatccggcgcagttactggaagcagctactgactttgcgtatcatcctggcgctctttccgatgcttcagctcaagactttcttaatcgatttcctcttccagccattatcaatgctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagagaagcttttcaaaacaagatatggagcatcactcattccacactacatgccatttgttattgtcggtctcggtgcagagtctcagaaagtcagacgcttagcatgccaaactgtatcctgcctgttggagaatattgatgaagcacttgttatacaactaattcatgagtatggagtttatcaacttttgcttaattgcctcataagtggggatgcggaagttgctgctgcatctacagatgcaattaggaaactggctagccattcgaaaggcattgatatcatatttcctgaaagcggcaatgaagcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="30039" stop="35006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30339" g_stop="30467" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30614" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="193" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31508" g_stop="31616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="302" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32744" g_stop="32806" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="365" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="463" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="530" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34672" g_stop="34706" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="565" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E330460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30339" e_stop="30467"/>
          <exon e_start="30551" e_stop="30614"/>
          <exon e_start="31508" e_stop="31616"/>
          <exon e_start="32744" e_stop="32806"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTGGTATTTGTGATTTTTTTTTGACTTGTTTCTCGTCTTTGGTAAATAAGCAATTGGTTAATTTGTGTATCTTACAATTTTTTCAGGCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAAGTATCTACTATTTTCTCTACTCTGTGTTGTCAGCTCTTTCTACATGAGTTTTCGGCTTACAAGTTACAATACACTCTGTATCAATTGCTCACTGAATGTGTGTGGCAGAGTTAGAAACTGTGTAAACTCCTTCCAAATGCTACGATTAATCCAGTGGAGATTTGTGTAGTTTTTTTTTTGAATAAAATGTTTAAACTAGACAAAAGTAATACAGATTACAATCTTTTATTGGCTCAGTTCATTTTTCTCAGTCATGTTTTGCTTCATGAGAGTCAATTTAACTAATATTTGAAGTTAAAGTTGAATTAGATTAATTTAATATTTTATAATTTAGATGTTCGAAAACTATAAATTGCAAGCCTTCTCATATTATATGTTGAAAAATAAGTCTTAAAATGTTGATCAAAATTCATGCTATTTGACTTTTGAAAAGTGAAAAGTGACAAATTAAAGTTAATGGAGTTTAAACCCGTTTGAATCTTTTTGGAATGGAGAGGGTATTCAACTTTCTGTAGTGGTGCTCCTACATGCTTGAATTTTACCATACCACATCACCTAGCTTAGAGAGATATAGTTTTGTCAATTTCCCACAAAGGGGGATTACACTGGGTCTGCTGTTGTAATTTCCCACTGAATATGTGTGGCAGTGTTAGAAACTATGCAAATTCCTTACAATTACAAGGGCTAATGCATTAATCCTGTGGAGATTTGGTTAGGATTCTTTTTTTTTTTTTGAAATGAAATGTTTAAACTATATAAACATACTATAGATTACAATCTTTTACAAGTAAGAGAATTTAAACAATGTTCAAACAATCTTGTTTGTGTATTTTTGGGACAGGTTGGAAATGCTCCTACTGGCTTGCTGATTGTTAACTTTGAATTTCTTGCAGTGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAGCGGCAATGAAGCGAC</genome_strand>
        <mrna_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG...................................................................................GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT..........................................................................................................................GATATCATATTTCCTGAAAGCGGCAATGAAGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330209" ref_strand="+" ref_description="SGN-E330209 [cTOD-4-M13]">
      <seq>tctcatctttttcctcaccgtctgcaacatcttttttctctctctctgatacactaacaatggcggaagagtactctgtggatccggcgcagttactggaagcagctactgactttgcgtatcatcctggcgctctttccgatgcttcagctcaagactttcttaatcgatttcctcttccagccattatcaatgctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagagaagcttttcaaaacaagatatggagcatcactcattccacactacatgccatttgttattgtcggtctcggtgcagagtctcagaaagtcagacgcttagcatgccaaactgtatcctgcctgttggagaatattgatgaagcacttgttatacaactaattcatgagtatggagtttatcaacttttgcttaattgcctcataagtggggatgcggaagttgctgctgcatctacagatgcaattaggaaactggctagccattcgaaaggcattgatatcatatttcctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="30039" stop="34991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30339" g_stop="30467" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30614" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="193" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31508" g_stop="31616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="302" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32744" g_stop="32806" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="365" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="463" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="530" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34672" g_stop="34691" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="550" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E330209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30339" e_stop="30467"/>
          <exon e_start="30551" e_stop="30614"/>
          <exon e_start="31508" e_stop="31616"/>
          <exon e_start="32744" e_stop="32806"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTGGTATTTGTGATTTTTTTTTGACTTGTTTCTCGTCTTTGGTAAATAAGCAATTGGTTAATTTGTGTATCTTACAATTTTTTCAGGCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAAGTATCTACTATTTTCTCTACTCTGTGTTGTCAGCTCTTTCTACATGAGTTTTCGGCTTACAAGTTACAATACACTCTGTATCAATTGCTCACTGAATGTGTGTGGCAGAGTTAGAAACTGTGTAAACTCCTTCCAAATGCTACGATTAATCCAGTGGAGATTTGTGTAGTTTTTTTTTTGAATAAAATGTTTAAACTAGACAAAAGTAATACAGATTACAATCTTTTATTGGCTCAGTTCATTTTTCTCAGTCATGTTTTGCTTCATGAGAGTCAATTTAACTAATATTTGAAGTTAAAGTTGAATTAGATTAATTTAATATTTTATAATTTAGATGTTCGAAAACTATAAATTGCAAGCCTTCTCATATTATATGTTGAAAAATAAGTCTTAAAATGTTGATCAAAATTCATGCTATTTGACTTTTGAAAAGTGAAAAGTGACAAATTAAAGTTAATGGAGTTTAAACCCGTTTGAATCTTTTTGGAATGGAGAGGGTATTCAACTTTCTGTAGTGGTGCTCCTACATGCTTGAATTTTACCATACCACATCACCTAGCTTAGAGAGATATAGTTTTGTCAATTTCCCACAAAGGGGGATTACACTGGGTCTGCTGTTGTAATTTCCCACTGAATATGTGTGGCAGTGTTAGAAACTATGCAAATTCCTTACAATTACAAGGGCTAATGCATTAATCCTGTGGAGATTTGGTTAGGATTCTTTTTTTTTTTTTGAAATGAAATGTTTAAACTATATAAACATACTATAGATTACAATCTTTTACAAGTAAGAGAATTTAAACAATGTTCAAACAATCTTGTTTGTGTATTTTTGGGACAGGTTGGAAATGCTCCTACTGGCTTGCTGATTGTTAACTTTGAATTTCTTGCAGTGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAG</genome_strand>
        <mrna_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG...................................................................................GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT..........................................................................................................................GATATCATATTTCCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276629" ref_strand="+" ref_description="SGN-E276629 [cLEN-17-P22]">
      <seq>ttttttctctctctctgatacactaacaatggcggaagagtactctgtggatccggcgcagttactggaagcagctactgactttgcgtatcatcctggcgctctttccgatgcttcagctcaagactttcttaatcgatttcctcttccagccattatcaatgctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagagaagcttttcaaaacaagatatggagcatcactcattccacactacatgccatttgttattgtcggtctcggtgcagagtctcagaaagtcagacgcttagcatgccaaactgtatcctgcctgttggagaatattgatgaagcacttgttatacaactaattcatgagtatggagtttatcaacttttgcttaattgcctcataagtggggatgcggaagttgctgctgcatctacagatgcaattaggaaactggctagccattcgaaaggcattgatatcatatttcctgaaagcggcaatgaagcgacaaacctcttgaacttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="30070" stop="35024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30370" g_stop="30467" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30614" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="162" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31508" g_stop="31616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="271" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32744" g_stop="32806" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="334" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="432" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="499" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34672" g_stop="34724" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="552" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E276629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30370" e_stop="30467"/>
          <exon e_start="30551" e_stop="30614"/>
          <exon e_start="31508" e_stop="31616"/>
          <exon e_start="32744" e_stop="32806"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTGGTATTTGTGATTTTTTTTTGACTTGTTTCTCGTCTTTGGTAAATAAGCAATTGGTTAATTTGTGTATCTTACAATTTTTTCAGGCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAAGTATCTACTATTTTCTCTACTCTGTGTTGTCAGCTCTTTCTACATGAGTTTTCGGCTTACAAGTTACAATACACTCTGTATCAATTGCTCACTGAATGTGTGTGGCAGAGTTAGAAACTGTGTAAACTCCTTCCAAATGCTACGATTAATCCAGTGGAGATTTGTGTAGTTTTTTTTTTGAATAAAATGTTTAAACTAGACAAAAGTAATACAGATTACAATCTTTTATTGGCTCAGTTCATTTTTCTCAGTCATGTTTTGCTTCATGAGAGTCAATTTAACTAATATTTGAAGTTAAAGTTGAATTAGATTAATTTAATATTTTATAATTTAGATGTTCGAAAACTATAAATTGCAAGCCTTCTCATATTATATGTTGAAAAATAAGTCTTAAAATGTTGATCAAAATTCATGCTATTTGACTTTTGAAAAGTGAAAAGTGACAAATTAAAGTTAATGGAGTTTAAACCCGTTTGAATCTTTTTGGAATGGAGAGGGTATTCAACTTTCTGTAGTGGTGCTCCTACATGCTTGAATTTTACCATACCACATCACCTAGCTTAGAGAGATATAGTTTTGTCAATTTCCCACAAAGGGGGATTACACTGGGTCTGCTGTTGTAATTTCCCACTGAATATGTGTGGCAGTGTTAGAAACTATGCAAATTCCTTACAATTACAAGGGCTAATGCATTAATCCTGTGGAGATTTGGTTAGGATTCTTTTTTTTTTTTTGAAATGAAATGTTTAAACTATATAAACATACTATAGATTACAATCTTTTACAAGTAAGAGAATTTAAACAATGTTCAAACAATCTTGTTTGTGTATTTTTGGGACAGGTTGGAAATGCTCCTACTGGCTTGCTGATTGTTAACTTTGAATTTCTTGCAGTGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGC</genome_strand>
        <mrna_strand>TTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG...................................................................................GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT..........................................................................................................................GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253653" ref_strand="+" ref_description="SGN-E253653 [cLEG-32-K24]">
      <seq>ctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagagaagcttttcaaaacaagatatggagcatcactcattccacactacatggtatcctgcctgttggagaatattgatgaagcacttgttatacaactaattcatgagtatggagtttatcaacttttgcttaattgcctcataagtggggatgcggaagttgctgctgcatctacagatgcaattaggaaactggctagccattcgaaaggcattgatatcatatttcctgaaagcggcaatgaagcgacaaacctcttgaacttcgcaaccaactgtgcacctctgggacgagttcgtgttttagctttgatagtgaagttattctccatttccacttctgtggcatcaagagtctacagctcaaatcttcttagcttgttggagacagaaatcagcaattcagatgatacattagtcacttcgagcagcttggaactcctatatgagttggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="31210" stop="36126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31510" g_stop="31616" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31617" i_stop="33365" i_length="1749">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="205" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="272" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34672" g_stop="34743" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="344" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34744" i_stop="35657" i_length="914">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35658" g_stop="35819" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="506" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E253653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31510" e_stop="31616"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34743"/>
          <exon e_start="35658" e_stop="35819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTGGTATGTTTTTTTGTGATGAATGTTAAAAGTTCTGTGTGCCTTTTGATAGGCAGTGTGCTGTATGCAATGAACAGCTCTGCTCTGAAATTAGTTCTTCACTTTCGGTCATGCTTGAATTTGTGTGAAAAACATGTCTAATGAGCAGTTCTCTTTTGAATTTATTGCTTTACTTGATGTCATGCTGAGATAAATTATTATAGTTGCTATCCAGTTAATCATAGCATATGAAATTATTCTTAAATAAAGAATCTATGAGACAAAGACACTACTCTTAATCTATACATACCACTAAGGAGCCTCAGCGCAATGGTAGGAGATTCTACTATTTGACCAGGAGGTCTGGACTTAAAGTTGGGGAACATTCTCTTGCAAACATACAATGTAAAGCTACATAAAATTAACCCAACATAGTCTGGCCCTTCCTTGCACCCCCCACAGAAAGAGTTTCTTGACTAGGTTTCCTATTCTTTAACCATCATACTTATTATTTCTTCTAATTTTGGTGAAGCTTCTTTGACATTCACTTTACTTTGTAGTTTGTAATGAGAGAATCATACTTCAGAAATATCTTTTCAAATCCTAACTTGGTTTTACTTTTTGCATAAATTACACATAACATCTACATGACGTAAGTTCAAAAGTTCTAATATCTATAGTTCGTATATCTTCTCTGATTCAAACAGAAATTATAATCATCGATCTATTTTGTTATGGATGTAATTGAGCTGGTGCCTTGTGTCTGTCTTGATTATTGAACTTATCTTACTCATCCCTCCAAAATTAAAATAAGAAAGAGGAAATAAAGTAATTAAAGTGGAATCCAATGTCAGTGGTGGTTCTTGATTCATCTGAACCTCATTGAGCTGTGGTATGCATTGCTAGTACTTGGGCTTTTCATTTTGCTAAATCCTCAGGGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG</genome_strand>
        <mrna_strand>CTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT..........................................................................................................................GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313593" ref_strand="+" ref_description="SGN-E313593 [cTOA-12-P12]">
      <seq>gaatttattagaaaatcaatttgcagatgaatgtgaacgtggctttgacgcgctcggacaaattgggttgtgtaagtttttattttttttatattcatgtccatgtgatatagctcaatttctccttgacaagagataccttgaactacatttatttcgacaaaaactttaaatagttcaggcaatttttatttataatttctttaaattaatgatcacactttgtacttatgagacctctgctgattttttggtgactccgcttagagtttgagccctactcgctttttaattatctgaacaaagtgtgtgtactgtaagtgtgcatgacaatggtcttagagtattgaaccgatcttgagtgtttcccattctcttgagaaggtacaaatgttttcattgttatcaaaacagtacaaagtatcaactccaaaagaagtgataaaaagaacaaaaaaagattagactaggctgactaatatagtctcactgtacatgaatagtttcaaaagcctctaaaatggtctcactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="37709" stop="38841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38008" g_stop="38541" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E313593" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38008" e_stop="38541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTATTAGAAAATCAAAATGCAGATGAATGTGAATGTGCTCTTGAAGCGCTCGGACAAATTGGGTTGTGTAAGTTTTTATTTTTTTTATATTCATGTCCATGTGATATAGCTCAATTTCTCCTTGACAAGAGATACCTTGAACTACATTTATTTCGACAAAAACTTTAAATAGTTCAGGCAATTTTTATTTATAATTTCTTTAAATTAATGATCACACTTTGTACTTATGAGACCTCTGCTGATTTTTTGGTGACTCCGCTTAGAGTTTGAGCCCTACTCGCTTTTTAATTATCTGAACAAAGTGTGTGTACTGTAAGTGTGCATGACAATAGTAAGAGAGTATTGAACTGTCCTCAGGTGTTTCCCATTCTTTTGAGAAGGTAAAAGGCTTTTCATTGTTATCAAAACAGTACAAAGTATCAACTCCAAAAGAAGTGATAAAAAGAACAAAAAAAGATTAGACTAGGCTGACTAATATAGTCTCACTGTACATGAATAGTTTCAAAAGCCTCTAAAATGGTCTCACTTTG</genome_strand>
        <mrna_strand>GAATTTATTAGAAAATCAATTTGCAGATGAATGTGAACGTGGCTTTGACGCGCTCGGACAAATTGGGTTGTGTAAGTTTTTATTTTTTTTATATTCATGTCCATGTGATATAGCTCAATTTCTCCTTGACAAGAGATACCTTGAACTACATTTATTTCGACAAAAACTTTAAATAGTTCAGGCAATTTTTATTTATAATTTCTTTAAATTAATGATCACACTTTGTACTTATGAGACCTCTGCTGATTTTTTGGTGACTCCGCTTAGAGTTTGAGCCCTACTCGCTTTTTAATTATCTGAACAAAGTGTGTGTACTGTAAGTGTGCATGACAATGGTCTTAGAGTATTGAACCGATCTTGAGTGTTTCCCATTCTCTTGAGAAGGTACAAATGTTTTCATTGTTATCAAAACAGTACAAAGTATCAACTCCAAAAGAAGTGATAAAAAGAACAAAAAAAGATTAGACTAGGCTGACTAATATAGTCTCACTGTACATGAATAGTTTCAAAAGCCTCTAAAATGGTCTCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259936" ref_strand="+" ref_description="SGN-E259936 [cLEG-51-G24]">
      <seq>acaaattgggttgtgtaagtttttattttttttatattcatgtccatgtgatatagctcaatttctccttgacaagagataccttgaactacatttatttcgacaaaaactttaaatagttcaggcaatttttatttataatttctttaaattaatgatcacactttgtacttatgagacctctgctgattttttggtgactccgcttagagtttgagccctactcgctttttaattatctgaacaaagtgtgtgtactgtaagtgtgcatgacaatagtaagagagtattgaactgtcctcaggtgtttcccattcttttgagaaggtaaaaggcttttcattgttatcaaaacagtacaaagtatcaactccaaaagaagtgataaaaagaacaaaaaaagattagactaggctgactaatatagtctcactgtacatgaatagtttcaaaagcctctaaaatggtctcactttgcctatgtcttccattttacactaagaagcaaacaaaagcaaacaattgaacttgatcttccaggttgggttggttaatgcttcaaaacatctttgattcctatctctccaaatagtcaccatgtacaatccatgattgtggcccatttcttccttagattttgtttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="37765" stop="39011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38065" g_stop="38711" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E259936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38065" e_stop="38711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTGGGTTGTGTAAGTTTTTATTTTTTTTATATTCATGTCCATGTGATATAGCTCAATTTCTCCTTGACAAGAGATACCTTGAACTACATTTATTTCGACAAAAACTTTAAATAGTTCAGGCAATTTTTATTTATAATTTCTTTAAATTAATGATCACACTTTGTACTTATGAGACCTCTGCTGATTTTTTGGTGACTCCGCTTAGAGTTTGAGCCCTACTCGCTTTTTAATTATCTGAACAAAGTGTGTGTACTGTAAGTGTGCATGACAATAGTAAGAGAGTATTGAACTGTCCTCAGGTGTTTCCCATTCTTTTGAGAAGGTAAAAGGCTTTTCATTGTTATCAAAACAGTACAAAGTATCAACTCCAAAAGAAGTGATAAAAAGAACAAAAAAAGATTAGACTAGGCTGACTAATATAGTCTCACTGTACATGAATAGTTTCAAAAGCCTCTAAAATGGTCTCACTTTGCCTATGTCTTCCATTTTACACTAAGAAGCAAACAAAAGCAAACAATTGAACTTGATCTTCCAGGTTGGGTTGGTTAATGCTTCAAAACATCTTTGATTCCTATCTCTCCAAATAGTCACCATGTACAATCCATGATTGTGGCCCATTTCTTCCTTAGATTTTGTTTTTAC</genome_strand>
        <mrna_strand>ACAAATTGGGTTGTGTAAGTTTTTATTTTTTTTATATTCATGTCCATGTGATATAGCTCAATTTCTCCTTGACAAGAGATACCTTGAACTACATTTATTTCGACAAAAACTTTAAATAGTTCAGGCAATTTTTATTTATAATTTCTTTAAATTAATGATCACACTTTGTACTTATGAGACCTCTGCTGATTTTTTGGTGACTCCGCTTAGAGTTTGAGCCCTACTCGCTTTTTAATTATCTGAACAAAGTGTGTGTACTGTAAGTGTGCATGACAATAGTAAGAGAGTATTGAACTGTCCTCAGGTGTTTCCCATTCTTTTGAGAAGGTAAAAGGCTTTTCATTGTTATCAAAACAGTACAAAGTATCAACTCCAAAAGAAGTGATAAAAAGAACAAAAAAAGATTAGACTAGGCTGACTAATATAGTCTCACTGTACATGAATAGTTTCAAAAGCCTCTAAAATGGTCTCACTTTGCCTATGTCTTCCATTTTACACTAAGAAGCAAACAAAAGCAAACAATTGAACTTGATCTTCCAGGTTGGGTTGGTTAATGCTTCAAAACATCTTTGATTCCTATCTCTCCAAATAGTCACCATGTACAATCCATGATTGTGGCCCATTTCTTCCTTAGATTTTGTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245984" ref_strand="+" ref_description="SGN-E245984 [cLEF-54-A18]">
      <seq>agaaagatttaagctctgatgctataatctctgacattccgtatagagatcttgagcagaattctggtctaagtcagtgtctaagaactaagccatggattatcatgccatgtggaaggacctaacgacgtgaagctgtcgtttaccattattgtgcattatttgttggtctagtgacgctagtcaagctatctagaaattctagttaatggtaccggctattacttttggtacatctggtcagacaggaatcctaggtgatctgatgggatctcaactccaagtcaacctgtaaaatccaattgtttacttagtctgtgtaactggctaaatctataccttttttggattgtgccagctcgccagatatagcttaatgttttgtacatgagtagactcaaatcttttttttgttatttttgcttagtcatctgcttgatgctattaatgaaaccttcttactccatcaaaaagaaaagttgttggcgtgatgactcattggggaaatgcttaatgggctagaatggtgtgtcatgatctagtgatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="38544" stop="39694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38844" g_stop="39394" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E245984" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38844" e_stop="39394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATTTAAGCTCTGATGCTATAATCTCTTACATTCCCTATAGAGATCTTGAGCAGAATTCTGGTCTAAGTCAGTGTCTAAGAACTAAGCCATGGATTATCATGCCATGTGGAAGGACCTAACGACGTGAAGCTGTCGTTTACCATTATTGTGCATTATTTGTTGGTCTAGTGACGCTAGTCAAGCTATCTAGAAATTCTAGTTAATGGTACCGGCTATTACTTTTGGTACATCTGGTCAGACAGGAATCCTAGGTGATCTGATGGGATCTCAACTCCAAGTCAACCTGTAAAATCCAATTGTTTACTTAGTCTGTGTAACTGGCTAAATCTATACCTTTTTTGGATTGTGCCAGCTCGCCAGATATAGCTTAATGTTTTGTACATGAGTAGACTCAAATCTTTTTTTTGTTATTTTTGCTTAGTCATCTGCTTGATGCTATTAATGAAACCTTCTTACTCCATCAAAAAGAAAAGTTGTTGGCGTGATGACTCAGTGGGGAAATGCTTAATGGGCTAGAATGGTGTGTCATGATCTAGTGATGTACT</genome_strand>
        <mrna_strand>AGAAAGATTTAAGCTCTGATGCTATAATCTCTGACATTCCGTATAGAGATCTTGAGCAGAATTCTGGTCTAAGTCAGTGTCTAAGAACTAAGCCATGGATTATCATGCCATGTGGAAGGACCTAACGACGTGAAGCTGTCGTTTACCATTATTGTGCATTATTTGTTGGTCTAGTGACGCTAGTCAAGCTATCTAGAAATTCTAGTTAATGGTACCGGCTATTACTTTTGGTACATCTGGTCAGACAGGAATCCTAGGTGATCTGATGGGATCTCAACTCCAAGTCAACCTGTAAAATCCAATTGTTTACTTAGTCTGTGTAACTGGCTAAATCTATACCTTTTTTGGATTGTGCCAGCTCGCCAGATATAGCTTAATGTTTTGTACATGAGTAGACTCAAATCTTTTTTTTGTTATTTTTGCTTAGTCATCTGCTTGATGCTATTAATGAAACCTTCTTACTCCATCAAAAAGAAAAGTTGTTGGCGTGATGACTCATTGGGGAAATGCTTAATGGGCTAGAATGGTGTGTCATGATCTAGTGATGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273426" ref_strand="+" ref_description="SGN-E273426 [cLEN-3-M2]">
      <seq>agactcaaatcttttttttgttattagtgcttagacatctgcttgatgctattaatgaaaccttcttactccatcaaaaagaaaagttgttggcgtgatgactcagtggggaaatgcttaatgggctagaatggtgtgtcatgatctagtgatgtactagctcaaagatccatatgctttggataaccacttgacgtgatgctaatcccgacttctgtgcatattttatctttctggactgttttgtagtatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="38937" stop="39790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39237" g_stop="39490" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E273426" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39237" e_stop="39490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCAAATCTTTTTTTTGTTATTTTTGCTTAGTCATCTGCTTGATGCTATTAATGAAACCTTCTTACTCCATCAAAAAGAAAAGTTGTTGGCGTGATGACTCAGTGGGGAAATGCTTAATGGGCTAGAATGGTGTGTCATGATCTAGTGATGTACTAGCTCAAAGATCCATATGCTTTGGATAACCACTTGACGTGATGCTAATCCCGACTTCTGTGCATATTTTATCTTTCTGGACTGTTTTGTAGTATTA</genome_strand>
        <mrna_strand>AGACTCAAATCTTTTTTTTGTTATTAGTGCTTAGACATCTGCTTGATGCTATTAATGAAACCTTCTTACTCCATCAAAAAGAAAAGTTGTTGGCGTGATGACTCAGTGGGGAAATGCTTAATGGGCTAGAATGGTGTGTCATGATCTAGTGATGTACTAGCTCAAAGATCCATATGCTTTGGATAACCACTTGACGTGATGCTAATCCCGACTTCTGTGCATATTTTATCTTTCTGGACTGTTTTGTAGTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250738" ref_strand="+" ref_description="SGN-E250738 [cLEG-7-F11]">
      <seq>ttttgtagtattacggttgcttcataactattctcaagtatgaatgtattcaggctatgaaaaaccagtacttgggtgcagctttataatcgtagggaattgccattggtgttaattgattctgcaaccattcttctagtgttcaatctactagatgtcatcgtttatgctgagctaatatttaatcctctcatcaaatattctttgatctgtcctcttgttcttgatatgaatatgcttctcgaagtactggttcctgcattcatgaagaagtaagttttttgttgctcttttgaccgccgtaatttctttctagcaccgtgtagttcactgtgacacatgccacttcaacatattcacttggttaagagaatacatcctaataaaaaaaaaatcttgtccttgacatcttgcagccagcaaaggtgcagcattgcttctctcaggtgcacagcctgcagaaagacatgtgatttatgcagcttttgatcagcaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="39178" stop="40277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39478" g_stop="39977" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E250738" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39478" e_stop="39977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAGTATTACGGTTGCTTCATAACTATTCTCAAGTATTAATGTATTCAGGCTATGAAAAACCAGTACTTGGTTGCAGCTTTATAATCGTAGGGAATTGCCATTGGTGTTAATTGATTCTGCAACCATTCTTCTAGTGTTCAATCTACTAGATGTCATCGTTTATGCTGAGCTAATATTTAATCCTCTCATCAAATATTCTTTGATCTGTCCTCTTGTTCTTGATATGAATATGCTTCTCGAAGTACTGGTTCCTGCATTCATGAAGAAGTAAGTTTTTTGTTGCTCTTTTGACCGCCGTAATTTCTTTCTAGCACCGTGTAGTTCACTGTGACACATGCCACTTCAACATATTCACTTGGTTAAGAGAATACATCCTAATAAAAAAAAAATCTTGTCCTTGACATCTTGCAGCCAGCAAAGGTGCAGCATTGCTTCTCTCAGGTGCACAGCCTGCAGAAAGACATGTGATTTATGCAGCTTTTGATCAGCAACAGC</genome_strand>
        <mrna_strand>TTTTGTAGTATTACGGTTGCTTCATAACTATTCTCAAGTATGAATGTATTCAGGCTATGAAAAACCAGTACTTGGGTGCAGCTTTATAATCGTAGGGAATTGCCATTGGTGTTAATTGATTCTGCAACCATTCTTCTAGTGTTCAATCTACTAGATGTCATCGTTTATGCTGAGCTAATATTTAATCCTCTCATCAAATATTCTTTGATCTGTCCTCTTGTTCTTGATATGAATATGCTTCTCGAAGTACTGGTTCCTGCATTCATGAAGAAGTAAGTTTTTTGTTGCTCTTTTGACCGCCGTAATTTCTTTCTAGCACCGTGTAGTTCACTGTGACACATGCCACTTCAACATATTCACTTGGTTAAGAGAATACATCCTAATAAAAAAAAAATCTTGTCCTTGACATCTTGCAGCCAGCAAAGGTGCAGCATTGCTTCTCTCAGGTGCACAGCCTGCAGAAAGACATGTGATTTATGCAGCTTTTGATCAGCAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712794" ref_strand="+" ref_description="SGN-E712794 [FB05DD04]">
      <seq>agttcttcagcttttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45140" stop="48940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45440" g_stop="45636" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="364" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48640" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="753" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E712794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45440" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCTTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTG</genome_strand>
        <mrna_strand>AGTTCTTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341791" ref_strand="+" ref_description="SGN-E341791 [cTOF-9-E12]">
      <seq>ttcagcttttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggnaagcattggagacattgaggaagaaaactgatgcagagtcagaggaaattgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacacttggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctgggtatggttcttgctccaaccactgaaccctgatccttgtaaccacagcttggatgtcaatccatattttttcattttcaatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45145" stop="48830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45445" g_stop="45636" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="359" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48530" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="646" r_length="287" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E341791" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45445" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGG-AAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACAC-TGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCT-GGTAT-GTTCCTGCTCCAGCCACTGAA-CCTGAT-CTTGTAGCCACAGCTT-GATGTCAATCCATA-TTTTTCATATTCAATGTA</genome_strand>
        <mrna_strand>TTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGNAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAATTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGGTATGGTTCTTGCTCCAACCACTGAACCCTGATCCTTGTAACCACAGCTTGGATGTCAATCCATATTTTTTCATTTTCAATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737480" ref_strand="+" ref_description="SGN-E737480 [LC10AA11]">
      <seq>agcttttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatcagttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaaaaaagcggattctgctgctaaaagggcaagacaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45148" stop="46238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45448" g_stop="45636" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45938" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="297" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E737480" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45448" e_stop="45636"/>
          <exon e_start="45831" e_stop="45938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTG</genome_strand>
        <mrna_strand>AGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCAGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAAAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737487" ref_strand="+" ref_description="SGN-E737487 [LC10AB11]">
      <seq>agcttttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45148" stop="46238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45448" g_stop="45636" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45938" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="297" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E737487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45448" e_stop="45636"/>
          <exon e_start="45831" e_stop="45938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTG</genome_strand>
        <mrna_strand>AGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291273" ref_strand="+" ref_description="SGN-E291273 [cLET-2-C7]">
      <seq>tttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45152" stop="48711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45636" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="352" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48411" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="512" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E291273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTC</genome_strand>
        <mrna_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289692" ref_strand="+" ref_description="SGN-E289692 [cLET-4-G21]">
      <seq>tttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45152" stop="48656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45636" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="352" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48356" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E289692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAA</genome_strand>
        <mrna_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283146" ref_strand="+" ref_description="SGN-E283146 [cLER-17-E14]">
      <seq>tttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaaaccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45152" stop="48653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45636" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="352" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48353" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="454" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E283146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGAT</genome_strand>
        <mrna_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAACCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289427" ref_strand="+" ref_description="SGN-E289427 [cLET-3-F13]">
      <seq>tttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaaaggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45152" stop="48597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45636" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="352" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48297" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="398" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E289427" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGT</genome_strand>
        <mrna_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAA..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289706" ref_strand="+" ref_description="SGN-E289706 [cLET-4-O1]">
      <seq>tttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaagtcactcaatttttctgctaacacttctctcaatctggtctctaaagggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45152" stop="45939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45452" g_stop="45636" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45835" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="190" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E289706" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45452" e_stop="45636"/>
          <exon e_start="45831" e_stop="45835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACT</genome_strand>
        <mrna_strand>TTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAAGTCACTCAATTTTTCTGCTAACACTTCTCTCAATCTGGTCTCTAAAG..................................................................................................................................................................................................GGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373249" ref_strand="+" ref_description="SGN-E373249 [TUS-31-F23]">
      <seq>ttgttgtagagagtgtgagaaatacagaaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgaccttttttgtgcaatcaatttctacttctctttttgtttctttagttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45159" stop="122761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45459" g_stop="45636" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="346" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48667" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="764" r_length="418" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E373249" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45459" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAA-AAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACC-TTTTTGTGCAATCAATTTCTACTTCTC-TTTTGTTTCTTCAGTTAGTAATTATGTGTACT</genome_strand>
        <mrna_strand>TTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTTGTGCAATCAATTTCTACTTCTCTTTTTGTTTCTTTAGTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287775" ref_strand="+" ref_description="SGN-E287775 [cLES-19-G23]">
      <seq>ttgttgcagagagtgtgagaaatacagaaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45159" stop="48746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45459" g_stop="45636" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="346" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48446" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="541" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E287775" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45459" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTAGAGAGTGTGAGAAATACAG-AAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCAT</genome_strand>
        <mrna_strand>TTGTTGCAGAGAGTGTGAGAAATACAGAAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295416" ref_strand="+" ref_description="SGN-E295416 [cLET-23-N17]">
      <seq>ttgtagagagtgtgagaaatacagaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45162" stop="48827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45462" g_stop="45636" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="341" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48527" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="617" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E295416" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45462" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAAT</genome_strand>
        <mrna_strand>TTGTAGAGAGTGTGAGAAATACAG-AAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396520" ref_strand="+" ref_description="SGN-E396520 [TUS-24-I18]">
      <seq>tgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaaaaaagaaagcatttgagattcatcatggctggtatgttcctgctccagccactgaacctaatcttgtaaccacagcttgattgtcaaatcccatatttttcatatttcaatgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45174" stop="48832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45474" g_stop="45636" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="330" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48532" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="615" r_length="285" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E396520" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45474" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGA-TGTC-AAT-CCATATTTTTCATA-TTCAATGTAAA</genome_strand>
        <mrna_strand>TGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAAAAAGAAAGCATTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTAATCTTGTAACCACAGCTTGATTGTCAAATCCCATATTTTTCATATTTCAATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E247515" ref_strand="+" ref_description="SGN-E247515 [cLEF-42-O11]">
      <seq>gagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgttagagtgtgtctacataatacaacacgctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45175" stop="48826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45475" g_stop="45636" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="329" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48528" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="606" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E247515" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45475" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATG</genome_strand>
        <mrna_strand>GAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTAGAGTGTGTCTACATAATACAACACGCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373248" ref_strand="+" ref_description="SGN-E373248 [TUS-31-F23](-)">
      <seq>aaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttgtttcttcagttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45188" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45488" g_stop="45636" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="316" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48659" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="724" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E373248" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45488" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTA</genome_strand>
        <mrna_strand>AAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282874" ref_strand="+" ref_description="SGN-E282874 [cLER-15-L21]">
      <seq>ttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45218" stop="48711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45518" g_stop="45636" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="286" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48411" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="446" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E282874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45518" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTC</genome_strand>
        <mrna_strand>TTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282619" ref_strand="+" ref_description="SGN-E282619 [cLER-15-K21]">
      <seq>ttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45218" stop="48657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45518" g_stop="45636" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="286" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48357" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="392" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E282619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45518" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAG</genome_strand>
        <mrna_strand>TTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690256" ref_strand="+" ref_description="SGN-E690256 [LH_Ea03A14]">
      <seq>taacaccctttctctcaatggaccacatgctgatgcatctatgtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaataaagcggattctgcagctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcaaagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcatttgaaattcatcatggctgggatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtggcatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgaccttgttgtgcaatcaatttctacttctcttttgtttcttcagatagaaattatgggtactttcatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45249" stop="48974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45548" g_stop="45636" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="256" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48686" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="691" r_length="435" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E690256" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45548" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTACTTTCATTTTGTTTCTTGAAA</genome_strand>
        <mrna_strand>TAACACCCTTTCTCTCAATGGACCACATGCTGATGCATCTATGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAATAAAGCGGATTCTGCAGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAAAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCATTTGAAATTCATCATGGCTGGGATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGGCATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTGTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGATAGAAATTATGGGTACTTTCATTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694096" ref_strand="+" ref_description="SGN-E694096 [LH_Ea03A14](-)">
      <seq>aacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgcagctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtggcatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtaaaggaccttgttgtgcaatcaatttctacttctcttttaataggcagttagtaattatgtgtctttcattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45249" stop="122763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45549" g_stop="45636" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="255" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48691" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="693" r_length="438" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E694096" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45549" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTACTTTCATTTTGTTTCTTGAAAATAAT</genome_strand>
        <mrna_strand>AACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCAGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGGCATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTAAAGGACCTTGTTGTGCAATCAATTTCTACTTCTCTTTT-AATAGGCAGTTAGTAATTATGTGT-CTTTCATTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284942" ref_strand="-" ref_description="SGN-E284942 [cLER-19-N12]">
      <seq>aaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttgtttcttcagataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45529" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45633" g_stop="45636" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="171" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48659" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="579" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E284942" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284942" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45633" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTA</genome_strand>
        <mrna_strand>AAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268198" ref_strand="-" ref_description="SGN-E268198 [cLEI-15-F14]">
      <seq>ctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttgtttcttcagttaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45663" stop="126905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45963" g_stop="45997" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48252" g_stop="48652" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="436" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48653" i_stop="49484" i_length="832">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49485" g_stop="49511" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="463" r_length="27" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E268198" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268198" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45963" e_stop="45997"/>
          <exon e_start="48252" e_stop="48652"/>
          <exon e_start="49485" e_stop="49511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTACTTTCATTTTGTTTCTTGAAAATAATGTTGTTGATGTTTAGATTTCAGAGTTTTCCGACTCCGCTTGTGGGATTACAGAAACTCCACTTATGGGATAACAAACGGGCATGTTGTTTAGAATTCAGAGTTCGTGAGAAATAAATCTTCAAATGAACATTTTTGGGACGTTAGAACACACTAATAGTATAAAAAATCTATATATAGAGTGTATAACTTAAATTAGAGTGTTTAAATTAGAGTGTTTTTCCTTGTGTGGATCTAATAAAAACTTGATGAGTCGATGTATTTTCTTTACATATCTTTTTACTAACAATTATATATTTACTTTGTAAATATGAACCCACGTACACAATGTTTTTTTTTTTCGTACATTAAATTCCGCCTACCATAAAAACTGTATAGTATATTGAATAATAAATTAATGAGAACACCTGCTTCATGATCGAGTTTCTTCTAAAATCTAAATAAGAAGGATAACAAAATTGAGTTTAATTAAATACATTTGCATATACTCCTTACGGTTCCAAATTATTATAGTTTTAATAAATTAATTTTGTCTTAAAATATCTGACATCTAAAAAAATTTACTTATTATATCCAAATTTTAACTTTTTTAATTTAATCATTTAATTTAATCAGTAAAGTATTACTAGTGATTAAATAAGTCATTTTGAGAGAAGTAAAGAAAACATAAGATAAACAAATTAATTTTGTCTTAAAATATCTGACATCTAAAAATATTTACTTATTATATTCAAGTTTTAACTTTTTTAATTTAATTAGTAAAGTATTACTAGTGATTATATAAGTCATTTCGAGAGAAATAAATAAAACATAATATAAACA</genome_strand>
        <mrna_strand>CTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318614" ref_strand="+" ref_description="SGN-E318614 [cTOB-9-F15]">
      <seq>tcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaaccactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagctgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45678" stop="48938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45978" g_stop="45997" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48252" g_stop="48647" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="417" r_length="397" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E318614" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45978" e_stop="45997"/>
          <exon e_start="48252" e_stop="48647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAA-CACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTC</genome_strand>
        <mrna_strand>TCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACCACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGCTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318731" ref_strand="+" ref_description="SGN-E318731 [cTOB-9-F12]">
      <seq>gaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgatcgcagaggcatattctgcaatcgataaagcaggtaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagccattgagattcatcatggctggtatgttactgctccagccactgaacctgatcttgtcgccacagcttgatgtcaatccatatttttcatattcaatgtcaagcagtgacatcttgtggagaattcaacgtcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgagcaatcaatatctacttctttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="47958" stop="48939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48258" g_stop="48648" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E318731" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48258" e_stop="48648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCA</genome_strand>
        <mrna_strand>GAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATCGCAGAGGCATATTCTGCAATCGATAAAGCAGGTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCCATTGAGATTCATCATGGCTGGTATGTTACTGCTCCAGCCACTGAACCTGATCTTGTCGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTCAAGCAGTGACATCTTGTGGAGAATTCAACGTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGAGCAATCAATATCTACTTCT-TTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289253" ref_strand="+" ref_description="SGN-E289253 [cLES-18-E14]">
      <seq>gataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="48051" stop="48875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48351" g_stop="48575" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E289253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48351" e_stop="48575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATC</genome_strand>
        <mrna_strand>GATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392008" ref_strand="+" ref_description="SGN-E392008 [TUS-24-I18](-)">
      <seq>aagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttgtttcttcagttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="48119" stop="48956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48419" g_stop="48665" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E392008" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48419" e_stop="48665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTA</genome_strand>
        <mrna_strand>AAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284694" ref_strand="+" ref_description="SGN-E284694 [cLES-3-F9]">
      <seq>ttcaatgggttaaattctaaatccttaaaccccctcaataaacctttgttcttttcatctttaagggtttcagttttagggaattggagctgagctgcagtttgtgtgaagtgaaaaatggggagattatttttggtggatcttgaaggtaaaacttacaattgcaaattctgcaaaacccaacttggtctggctgatgatcttgtttcaaaggcttttcattgccgcaggggaaaagcatacctgttcaataatgtggtaaatataacttttggacagagcgaggagaggacgatgctttctggaacgcacactgtgaacgatatattttgttgttgctgtgggcagattcttggctggaaatatgagagagcccatgagaaaagccagaagtacaaagaagggaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="52212" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52512" g_stop="52724" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52725" i_stop="54513" i_length="1789">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54514" g_stop="54557" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="257" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54558" i_stop="56084" i_length="1527">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56085" g_stop="56193" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="366" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56194" i_stop="56391" i_length="198">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56392" g_stop="56437" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="412" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E284694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52512" e_stop="52724"/>
          <exon e_start="54514" e_stop="54557"/>
          <exon e_start="56085" e_stop="56193"/>
          <exon e_start="56392" e_stop="56437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGGTTAAATTCTAAATCCTTAAACCCCCTCAATAAACCTTTGTTCTTTTCATCTTTAAGGGTTTCAGTTTTAGGGAATTGGAGCTGAGCTGCAGTTTGTGTGAAGTGAAAAATGGGGAGATTATTTTTGGTGGATCTTGAAGGTAAAACTTACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAGGTACAATTTCCCCCCTTTTTTTATTTTTTGGTTCTTTTTTGTGGTTAAATTACTAGATTTAGCTATGGAATTCTGATTTTTCATTGACATATGGTTATATATCACGGTTGGGTACAAGTAAAAATCTCAGCTTTTATAGTTTTTCTTTTTTTTTTTTGGTTTTGTTTTTTAAAATGAGCTTTTATAGCTAGTAAATGAATAATTTTTATGTGGTTTAGTACAATTGTAACATGTTTCTGGTTAATTCGTGAGTTTCAAATGTTCTTCCAAGTTTTATGAGGATTGAGGATTCATCATGAATCTGAATTAAGCATTAGGAAAATGGGTGATTCAAGTTAGGGATGGAAGTGTGTGAAGATTTTATTTGACTCTTAAAAAAATTGTTCTTGATATGAGTAAAAAATGAGTGACTACTTCATGGGAGATAGAAGTGACGTGCGAAGAAGTTTGGAAGCTCTCAAGCATGTTGGATCATGTCGATTGTATGTTTATACAGCGATGTTTGAATAAAATAGTTTATAGTTTAGCTAGATTTTCTATTTGTTTGTTGAAGGAGATCGCTTGGGAGAAGTTTTTCCCAAGCTGAGTTGTATGTGATGCTAAGGTACATTTGAATCCTATAGTTGTTGATGCAATAATACGAAGTGTTCAGAGCCGGTGAAAAAATTTCATGAATCTGACAAGTTTTATGTTGGATGCTAAGCATACATTGACCCTCCTCTTCTCTTTCTATATATACCGAGTCTCGGGGGAGCCTTGTGGGTGCCATGGCACCCCCTCGGCCCTTGATTGATCCCCCGCCCCCCTGGTTAGAAGCAGAGGCGAATCCAGTAGTTGAAGATAGGGGGGCACCATGAAGAGTGGCTCAAGGATAAGGCTAGGAGTGACTAAAGAGTAAGGTTAGCGGAGCACCCTGCTGAGGCCTCCAAAATTTTGAGGCCCCAATAAATTTTAATAGTGAATTTTATTAATTTATTTCATTTTAAGCAATATTGAACAATATAATTAAAAAATAAAAAAAAAGTTGAAAGAAGTACAATTCACTTTTTATCAAGAATATCCGGTTGACAAGGGCCTTGTTGAATATATGTCTTCTTACTTCATCTCGTATTGTTGGGCTATAATTTACAATGGATATCCTTTTTCCTAGATCCAATGTAAGTGATTGAAATCAAATTCATCTATAAAACGCGAAGAATTGTCTCTAAAACTAGAACTTAGTTAACAAGAATTATGTGAATCACAGGAATCAACAATGAGAGTAGGACCTTAATTCTGTAAGCGTAGACTTTCTAGAAAACCAAGATTTAAAGTAAATGCTTACCTTCAGCGGGATTCGATCCCGCGCTCTTGCGCTTCATAGGCGCATTCGACCAGTGCACCCACAACAACTTTTGGTTGTTAGGGTACACAATTATATATATTATCGTTTAATCAACTGTCTATACATACATATTCGATTTTGAAAAAAATTACCGGGTGCATGTGGGTCCGCCCCTGGTTAAAAACATTTCCCTTTTTCACTCATAAGTAAAATATATACATAAGAATTGTCTAGCACCAATAGGTGACATAAGTTGGAATTCTCGAAGCAAGTAAAATTAGTTGAAACTTTAATTGGAACTTAAGAAATTCCTTTTATCTCATTGTGTTTGAACTGTTAGTTTACTTGCTTTGTTGTGGTTTATTTCATGAGAAAATTGTGTTTCGTCATTGCTGCATAAATTGCAATTCAGTTTGCGATGTTTAACTATATCTGACGAAATCTCCTTTATGTTATCTTGTTCAGGCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGTGTGAGTGGCCTCTAATTATTCTTAACATCAGATTGATAGTATACATTGCTATTTCATGAATCAGTACTTCTGCTTTACAAGTGATTGGATTTGTCAGTAAACCTGCATCCATTCATGAGTGACAACTGGTGCTTTCTTTTTGGGGCTTATACGTTACTATATCTGTTGTCGGGAGAATGTGTTGTTTAATATGTTTGGCGCATCATTCGGAAGCAGTGGATAGGTGTTTCTTTTAATTGGTAAAGTGTCATGTTACCACTGATAACCTGTTGCGTCTATTTTCAGTGAGTTTTAGGTAATACCCTCATTTTTATTCAACAAAATGTCATTTGAGATCAAGTATCTTGAAATGTATGATATTCCCTGTTTGGACATTTTTTTTTAAAATGGTAGATTTTTTATTAATAATAGTACCAAGATGGTACAAAAGTACAAGCCACCAAAAAGACAAGTAGCAACCATTCTTTGTTCTTATTAATATTCCTTTAAATTACTGGGGTGGGAGGTTATAGATATAAATGGCTCTTGCAAAGAAATGCACTTGAGGCATATAGGAACGTCTCACATTTAATTTGATTTAAAATGCTTTGTCATGCTTTCTATAGTATTTTGCCATAATTTCTTTACTTTCGTTATTCTTTTTCAATCTGCTTTGATATGTTTTTTCCTTGAGCTGAGGGTCGATAGGAAACAACCTCTCTACCTTCCAAGGTAGGCGTATTGTTGGGTACACTCTACCCTCCCCAAACCCCTCTTTGGGATTACACTGGCTATGTAGTTGTTATTGTTAGTTGCAAGTTCCAAGGGCTCGCTCATCATCAGCATCGGCTAGTTATTTTGTGCATACCTATTTGACTTGGGCCACATTTGAATATAGGGTTTGCTCAGTTGTCCAAGGTATGTACTATACATACATACGTATGTATGCTTGCATTCTCTTCTTGCCCATATACTTTCAAGACTTCGGTTTCCCTGGATTAGACTGGCTATCCAGATGTAATGTTGTCATTAGCAACTATAGTTCATGTTTTTATAGTTTCATTAATGAGATATCAACCTAGCAAGTTAAAAATGGAAGATAATGCTGCATGCTGATGGAATCTGTACTTTTATTGTAGATTCAGTTTTCTGAGGACTGAGCGGTTGTAGTTGGTAGAAGACCACTTTACCTTTTTAAAGATATTGCTATGTTTAAAGCTTATTTTCTGACAGGAAGCTAAACTGAATTGTCTTACAGTGGAAGTTGGTTATTTAATTCGGGGTTGAACAGATTAGTTTATGTCATGGTTGGGAAGTGATGATCTCTTACCAGGGGCACAATTTATTTTGAGAACTTCAAATTTTCAAATTTCAAATAAAATAAACTAGTTCAGTGGTTTTCTTTACTTGGCTTTCTTGATTTTGCAAGAGATGTTTGTTGTTAGCTCCATTTTCTGTTCTTTTATCCTTTCCCGGCCTGATCAGACTATGTTTCTTTTCCAACTCATATGATGGAATTTTTCACCTTTCTTTCTTTGTGTTATGCAGGGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATATGTAATCCCTTTTATTCCTTCTTCTTTGTCCATAGGCATCAACACGTAGAGCCAAAACATACAACCATGGCAACACACAACAAAAGTCCCTTATATTAGCTTTTGAGGGATATGAGTCGGTGTATATAAGCTAAACTCACACGTTATATGTAACGCTTAGTTCTATGAACGACTAAATATTTGTGTCTCGTTTACACAGGAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTG</genome_strand>
        <mrna_strand>TTCAATGGGTTAAATTCTAAATCCTTAAACCCCCTCAATAAACCTTTGTTCTTTTCATCTTTAAGGGTTTCAGTTTTAGGGAATTGGAGCTGAGCTGCAGTTTGTGTGAAGTGAAAAATGGGGAGATTATTTTTGGTGGATCTTGAAGGTAAAACTTACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATAT......................................................................................................................................................................................................GAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539764" ref_strand="+" ref_description="SGN-E539764 [TUS-59-L3](-)">
      <seq>tcaataaacttttgtcctttcatctttaagggtttcagttttagggaattggagctgagctgcagtttgtgtgaagtgaaaaatggggagattatttttggtggatcttgaaggtaaaacttacaattgcaaattctgcaaaacccaacttggtctggctgatgatcttgtttcaaaggcttttcattgccgcaggggaaaagcatacctgttcaataatgtggtaaatataacttttggacagagcgaggagaggacgatgctttctggaacgcacactgtgaacgatatattttgttgttgctgtgggcagattcttggctggaaatatgagagagcccatgagaaaagccagaagtacaaagaagggaaatttgtccttgaaagaggcaggatcattgatggagaagttgattccgaattctacattgatactcgagcaagcacaagtgatggtgaagatacaatgtaaacagtgggagcttagtgcatcgatttgcagatcacttgtatcttgtagacttagcaaaagaaaagttgtatcttatctggagttctcctcnaagtttgtggatacagaaactaagtttctgcagaagtgnttttataatcgataaagtaaatgttttaattaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="52246" stop="57140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52546" g_stop="52724" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52725" i_stop="54513" i_length="1789">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54514" g_stop="54557" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="222" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54558" i_stop="56084" i_length="1527">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56085" g_stop="56193" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="331" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56194" i_stop="56391" i_length="198">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56392" g_stop="56447" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="387" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56448" i_stop="56595" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56596" g_stop="56839" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="633" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="634" polyA_stop="647"/>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E539764" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52546" e_stop="52724"/>
          <exon e_start="54514" e_stop="54557"/>
          <exon e_start="56085" e_stop="56193"/>
          <exon e_start="56392" e_stop="56447"/>
          <exon e_start="56596" e_stop="56839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAAACCTTTGTTCTTTTCATCTTTAAGGGTTTCAGTTTTAGGGAATTGGAGCTGAGCTGCAGTTTGTGTGAAGTGAAAAATGGGGAGATTATTTTTGGTGGATCTTGAAGGTAAAACTTACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAGGTACAATTTCCCCCCTTTTTTTATTTTTTGGTTCTTTTTTGTGGTTAAATTACTAGATTTAGCTATGGAATTCTGATTTTTCATTGACATATGGTTATATATCACGGTTGGGTACAAGTAAAAATCTCAGCTTTTATAGTTTTTCTTTTTTTTTTTTGGTTTTGTTTTTTAAAATGAGCTTTTATAGCTAGTAAATGAATAATTTTTATGTGGTTTAGTACAATTGTAACATGTTTCTGGTTAATTCGTGAGTTTCAAATGTTCTTCCAAGTTTTATGAGGATTGAGGATTCATCATGAATCTGAATTAAGCATTAGGAAAATGGGTGATTCAAGTTAGGGATGGAAGTGTGTGAAGATTTTATTTGACTCTTAAAAAAATTGTTCTTGATATGAGTAAAAAATGAGTGACTACTTCATGGGAGATAGAAGTGACGTGCGAAGAAGTTTGGAAGCTCTCAAGCATGTTGGATCATGTCGATTGTATGTTTATACAGCGATGTTTGAATAAAATAGTTTATAGTTTAGCTAGATTTTCTATTTGTTTGTTGAAGGAGATCGCTTGGGAGAAGTTTTTCCCAAGCTGAGTTGTATGTGATGCTAAGGTACATTTGAATCCTATAGTTGTTGATGCAATAATACGAAGTGTTCAGAGCCGGTGAAAAAATTTCATGAATCTGACAAGTTTTATGTTGGATGCTAAGCATACATTGACCCTCCTCTTCTCTTTCTATATATACCGAGTCTCGGGGGAGCCTTGTGGGTGCCATGGCACCCCCTCGGCCCTTGATTGATCCCCCGCCCCCCTGGTTAGAAGCAGAGGCGAATCCAGTAGTTGAAGATAGGGGGGCACCATGAAGAGTGGCTCAAGGATAAGGCTAGGAGTGACTAAAGAGTAAGGTTAGCGGAGCACCCTGCTGAGGCCTCCAAAATTTTGAGGCCCCAATAAATTTTAATAGTGAATTTTATTAATTTATTTCATTTTAAGCAATATTGAACAATATAATTAAAAAATAAAAAAAAAGTTGAAAGAAGTACAATTCACTTTTTATCAAGAATATCCGGTTGACAAGGGCCTTGTTGAATATATGTCTTCTTACTTCATCTCGTATTGTTGGGCTATAATTTACAATGGATATCCTTTTTCCTAGATCCAATGTAAGTGATTGAAATCAAATTCATCTATAAAACGCGAAGAATTGTCTCTAAAACTAGAACTTAGTTAACAAGAATTATGTGAATCACAGGAATCAACAATGAGAGTAGGACCTTAATTCTGTAAGCGTAGACTTTCTAGAAAACCAAGATTTAAAGTAAATGCTTACCTTCAGCGGGATTCGATCCCGCGCTCTTGCGCTTCATAGGCGCATTCGACCAGTGCACCCACAACAACTTTTGGTTGTTAGGGTACACAATTATATATATTATCGTTTAATCAACTGTCTATACATACATATTCGATTTTGAAAAAAATTACCGGGTGCATGTGGGTCCGCCCCTGGTTAAAAACATTTCCCTTTTTCACTCATAAGTAAAATATATACATAAGAATTGTCTAGCACCAATAGGTGACATAAGTTGGAATTCTCGAAGCAAGTAAAATTAGTTGAAACTTTAATTGGAACTTAAGAAATTCCTTTTATCTCATTGTGTTTGAACTGTTAGTTTACTTGCTTTGTTGTGGTTTATTTCATGAGAAAATTGTGTTTCGTCATTGCTGCATAAATTGCAATTCAGTTTGCGATGTTTAACTATATCTGACGAAATCTCCTTTATGTTATCTTGTTCAGGCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGTGTGAGTGGCCTCTAATTATTCTTAACATCAGATTGATAGTATACATTGCTATTTCATGAATCAGTACTTCTGCTTTACAAGTGATTGGATTTGTCAGTAAACCTGCATCCATTCATGAGTGACAACTGGTGCTTTCTTTTTGGGGCTTATACGTTACTATATCTGTTGTCGGGAGAATGTGTTGTTTAATATGTTTGGCGCATCATTCGGAAGCAGTGGATAGGTGTTTCTTTTAATTGGTAAAGTGTCATGTTACCACTGATAACCTGTTGCGTCTATTTTCAGTGAGTTTTAGGTAATACCCTCATTTTTATTCAACAAAATGTCATTTGAGATCAAGTATCTTGAAATGTATGATATTCCCTGTTTGGACATTTTTTTTTAAAATGGTAGATTTTTTATTAATAATAGTACCAAGATGGTACAAAAGTACAAGCCACCAAAAAGACAAGTAGCAACCATTCTTTGTTCTTATTAATATTCCTTTAAATTACTGGGGTGGGAGGTTATAGATATAAATGGCTCTTGCAAAGAAATGCACTTGAGGCATATAGGAACGTCTCACATTTAATTTGATTTAAAATGCTTTGTCATGCTTTCTATAGTATTTTGCCATAATTTCTTTACTTTCGTTATTCTTTTTCAATCTGCTTTGATATGTTTTTTCCTTGAGCTGAGGGTCGATAGGAAACAACCTCTCTACCTTCCAAGGTAGGCGTATTGTTGGGTACACTCTACCCTCCCCAAACCCCTCTTTGGGATTACACTGGCTATGTAGTTGTTATTGTTAGTTGCAAGTTCCAAGGGCTCGCTCATCATCAGCATCGGCTAGTTATTTTGTGCATACCTATTTGACTTGGGCCACATTTGAATATAGGGTTTGCTCAGTTGTCCAAGGTATGTACTATACATACATACGTATGTATGCTTGCATTCTCTTCTTGCCCATATACTTTCAAGACTTCGGTTTCCCTGGATTAGACTGGCTATCCAGATGTAATGTTGTCATTAGCAACTATAGTTCATGTTTTTATAGTTTCATTAATGAGATATCAACCTAGCAAGTTAAAAATGGAAGATAATGCTGCATGCTGATGGAATCTGTACTTTTATTGTAGATTCAGTTTTCTGAGGACTGAGCGGTTGTAGTTGGTAGAAGACCACTTTACCTTTTTAAAGATATTGCTATGTTTAAAGCTTATTTTCTGACAGGAAGCTAAACTGAATTGTCTTACAGTGGAAGTTGGTTATTTAATTCGGGGTTGAACAGATTAGTTTATGTCATGGTTGGGAAGTGATGATCTCTTACCAGGGGCACAATTTATTTTGAGAACTTCAAATTTTCAAATTTCAAATAAAATAAACTAGTTCAGTGGTTTTCTTTACTTGGCTTTCTTGATTTTGCAAGAGATGTTTGTTGTTAGCTCCATTTTCTGTTCTTTTATCCTTTCCCGGCCTGATCAGACTATGTTTCTTTTCCAACTCATATGATGGAATTTTTCACCTTTCTTTCTTTGTGTTATGCAGGGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATATGTAATCCCTTTTATTCCTTCTTCTTTGTCCATAGGCATCAACACGTAGAGCCAAAACATACAACCATGGCAACACACAACAAAAGTCCCTTATATTAGCTTTTGAGGGATATGAGTCGGTGTATATAAGCTAAACTCACACGTTATATGTAACGCTTAGTTCTATGAACGACTAAATATTTGTGTCTCGTTTACACAGGAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTGTCCTTGAAAGGTTCATTACTCTCCCCCACTTATATTTTTATAGTAAAAAAAAAAGGTTATGTTAATTCGCATTAACACTTCATCGTAAAAAACAATATGCTCGTTTCAAGTGTTCCTAACATAACATTTCTTTGTTGTTGATAATGCGCGTGGAACAGAGGCAGGATCATTGATGGAGAAGTTGATTCCGAATTCTACATTGATACTCGAGCAAGCACAAGTGATGGTGAAGATACAATGTAAACAGTGGGAGCTTAGTGCATCGATTTGCAGATCACTTGTATCTTGTAGACTTAGCAAAAGAAAAGTTGTATCTTATCTGGAGTTCTCCTC-AAGTTTGTGGATACAGAAACTAAGTTTCTGCAGAAGTG-TTTTATAATCGATAAAGTAAATGTTTTAATT</genome_strand>
        <mrna_strand>TCAATAAACTTTTG-TCCTTTCATCTTTAAGGGTTTCAGTTTTAGGGAATTGGAGCTGAGCTGCAGTTTGTGTGAAGTGAAAAATGGGGAGATTATTTTTGGTGGATCTTGAAGGTAAAACTTACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATAT......................................................................................................................................................................................................GAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTGTCCTTGAAAG....................................................................................................................................................AGGCAGGATCATTGATGGAGAAGTTGATTCCGAATTCTACATTGATACTCGAGCAAGCACAAGTGATGGTGAAGATACAATGTAAACAGTGGGAGCTTAGTGCATCGATTTGCAGATCACTTGTATCTTGTAGACTTAGCAAAAGAAAAGTTGTATCTTATCTGGAGTTCTCCTCNAAGTTTGTGGATACAGAAACTAAGTTTCTGCAGAAGTGNTTTTATAATCGATAAAGTAAATGTTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353322" ref_strand="+" ref_description="SGN-E353322 [cTOS-15-K1]">
      <seq>tacaattgcaaattctgcaaaacccaacttggtctggctgatgatcttgtttcaaaggcttttcattgccgcaggggaaaagcatacctgttcaataatgtggtaaatataacttttggacagagcgaggagaggacgatgctttctggaacgcacactgtgaacgatatattttgttgttgctgtgggcagattcttggctggaaatatgagagagcccatgagaaaagccagaagtacaaagaagggaaatttgtccttgaaagaggcaggatcattgatggagaagttgattccgaattctacattgatactcgagcaagcacaagtgatggtgaagatacaatgtaaacagtgggagcttagtgcatcgatttgcagatcacttgtatcttgtagacttagcaaaagaaaagttgtatcttatctggagttctccctcagtttgtggatacagaaactaagtttctgcagaagtgttttataatcgataaagtaaatgttttaattatcttacatggtttttgtggttcctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="52368" stop="57168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52668" g_stop="52724" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52725" i_stop="54513" i_length="1789">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54514" g_stop="54557" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="101" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54558" i_stop="56084" i_length="1527">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56085" g_stop="56193" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="210" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56194" i_stop="56391" i_length="198">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56392" g_stop="56447" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="266" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56448" i_stop="56595" i_length="148">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56596" g_stop="56868" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="539" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E353322" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52668" e_stop="52724"/>
          <exon e_start="54514" e_stop="54557"/>
          <exon e_start="56085" e_stop="56193"/>
          <exon e_start="56392" e_stop="56447"/>
          <exon e_start="56596" e_stop="56868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAGGTACAATTTCCCCCCTTTTTTTATTTTTTGGTTCTTTTTTGTGGTTAAATTACTAGATTTAGCTATGGAATTCTGATTTTTCATTGACATATGGTTATATATCACGGTTGGGTACAAGTAAAAATCTCAGCTTTTATAGTTTTTCTTTTTTTTTTTTGGTTTTGTTTTTTAAAATGAGCTTTTATAGCTAGTAAATGAATAATTTTTATGTGGTTTAGTACAATTGTAACATGTTTCTGGTTAATTCGTGAGTTTCAAATGTTCTTCCAAGTTTTATGAGGATTGAGGATTCATCATGAATCTGAATTAAGCATTAGGAAAATGGGTGATTCAAGTTAGGGATGGAAGTGTGTGAAGATTTTATTTGACTCTTAAAAAAATTGTTCTTGATATGAGTAAAAAATGAGTGACTACTTCATGGGAGATAGAAGTGACGTGCGAAGAAGTTTGGAAGCTCTCAAGCATGTTGGATCATGTCGATTGTATGTTTATACAGCGATGTTTGAATAAAATAGTTTATAGTTTAGCTAGATTTTCTATTTGTTTGTTGAAGGAGATCGCTTGGGAGAAGTTTTTCCCAAGCTGAGTTGTATGTGATGCTAAGGTACATTTGAATCCTATAGTTGTTGATGCAATAATACGAAGTGTTCAGAGCCGGTGAAAAAATTTCATGAATCTGACAAGTTTTATGTTGGATGCTAAGCATACATTGACCCTCCTCTTCTCTTTCTATATATACCGAGTCTCGGGGGAGCCTTGTGGGTGCCATGGCACCCCCTCGGCCCTTGATTGATCCCCCGCCCCCCTGGTTAGAAGCAGAGGCGAATCCAGTAGTTGAAGATAGGGGGGCACCATGAAGAGTGGCTCAAGGATAAGGCTAGGAGTGACTAAAGAGTAAGGTTAGCGGAGCACCCTGCTGAGGCCTCCAAAATTTTGAGGCCCCAATAAATTTTAATAGTGAATTTTATTAATTTATTTCATTTTAAGCAATATTGAACAATATAATTAAAAAATAAAAAAAAAGTTGAAAGAAGTACAATTCACTTTTTATCAAGAATATCCGGTTGACAAGGGCCTTGTTGAATATATGTCTTCTTACTTCATCTCGTATTGTTGGGCTATAATTTACAATGGATATCCTTTTTCCTAGATCCAATGTAAGTGATTGAAATCAAATTCATCTATAAAACGCGAAGAATTGTCTCTAAAACTAGAACTTAGTTAACAAGAATTATGTGAATCACAGGAATCAACAATGAGAGTAGGACCTTAATTCTGTAAGCGTAGACTTTCTAGAAAACCAAGATTTAAAGTAAATGCTTACCTTCAGCGGGATTCGATCCCGCGCTCTTGCGCTTCATAGGCGCATTCGACCAGTGCACCCACAACAACTTTTGGTTGTTAGGGTACACAATTATATATATTATCGTTTAATCAACTGTCTATACATACATATTCGATTTTGAAAAAAATTACCGGGTGCATGTGGGTCCGCCCCTGGTTAAAAACATTTCCCTTTTTCACTCATAAGTAAAATATATACATAAGAATTGTCTAGCACCAATAGGTGACATAAGTTGGAATTCTCGAAGCAAGTAAAATTAGTTGAAACTTTAATTGGAACTTAAGAAATTCCTTTTATCTCATTGTGTTTGAACTGTTAGTTTACTTGCTTTGTTGTGGTTTATTTCATGAGAAAATTGTGTTTCGTCATTGCTGCATAAATTGCAATTCAGTTTGCGATGTTTAACTATATCTGACGAAATCTCCTTTATGTTATCTTGTTCAGGCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGTGTGAGTGGCCTCTAATTATTCTTAACATCAGATTGATAGTATACATTGCTATTTCATGAATCAGTACTTCTGCTTTACAAGTGATTGGATTTGTCAGTAAACCTGCATCCATTCATGAGTGACAACTGGTGCTTTCTTTTTGGGGCTTATACGTTACTATATCTGTTGTCGGGAGAATGTGTTGTTTAATATGTTTGGCGCATCATTCGGAAGCAGTGGATAGGTGTTTCTTTTAATTGGTAAAGTGTCATGTTACCACTGATAACCTGTTGCGTCTATTTTCAGTGAGTTTTAGGTAATACCCTCATTTTTATTCAACAAAATGTCATTTGAGATCAAGTATCTTGAAATGTATGATATTCCCTGTTTGGACATTTTTTTTTAAAATGGTAGATTTTTTATTAATAATAGTACCAAGATGGTACAAAAGTACAAGCCACCAAAAAGACAAGTAGCAACCATTCTTTGTTCTTATTAATATTCCTTTAAATTACTGGGGTGGGAGGTTATAGATATAAATGGCTCTTGCAAAGAAATGCACTTGAGGCATATAGGAACGTCTCACATTTAATTTGATTTAAAATGCTTTGTCATGCTTTCTATAGTATTTTGCCATAATTTCTTTACTTTCGTTATTCTTTTTCAATCTGCTTTGATATGTTTTTTCCTTGAGCTGAGGGTCGATAGGAAACAACCTCTCTACCTTCCAAGGTAGGCGTATTGTTGGGTACACTCTACCCTCCCCAAACCCCTCTTTGGGATTACACTGGCTATGTAGTTGTTATTGTTAGTTGCAAGTTCCAAGGGCTCGCTCATCATCAGCATCGGCTAGTTATTTTGTGCATACCTATTTGACTTGGGCCACATTTGAATATAGGGTTTGCTCAGTTGTCCAAGGTATGTACTATACATACATACGTATGTATGCTTGCATTCTCTTCTTGCCCATATACTTTCAAGACTTCGGTTTCCCTGGATTAGACTGGCTATCCAGATGTAATGTTGTCATTAGCAACTATAGTTCATGTTTTTATAGTTTCATTAATGAGATATCAACCTAGCAAGTTAAAAATGGAAGATAATGCTGCATGCTGATGGAATCTGTACTTTTATTGTAGATTCAGTTTTCTGAGGACTGAGCGGTTGTAGTTGGTAGAAGACCACTTTACCTTTTTAAAGATATTGCTATGTTTAAAGCTTATTTTCTGACAGGAAGCTAAACTGAATTGTCTTACAGTGGAAGTTGGTTATTTAATTCGGGGTTGAACAGATTAGTTTATGTCATGGTTGGGAAGTGATGATCTCTTACCAGGGGCACAATTTATTTTGAGAACTTCAAATTTTCAAATTTCAAATAAAATAAACTAGTTCAGTGGTTTTCTTTACTTGGCTTTCTTGATTTTGCAAGAGATGTTTGTTGTTAGCTCCATTTTCTGTTCTTTTATCCTTTCCCGGCCTGATCAGACTATGTTTCTTTTCCAACTCATATGATGGAATTTTTCACCTTTCTTTCTTTGTGTTATGCAGGGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATATGTAATCCCTTTTATTCCTTCTTCTTTGTCCATAGGCATCAACACGTAGAGCCAAAACATACAACCATGGCAACACACAACAAAAGTCCCTTATATTAGCTTTTGAGGGATATGAGTCGGTGTATATAAGCTAAACTCACACGTTATATGTAACGCTTAGTTCTATGAACGACTAAATATTTGTGTCTCGTTTACACAGGAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTGTCCTTGAAAGGTTCATTACTCTCCCCCACTTATATTTTTATAGTAAAAAAAAAAGGTTATGTTAATTCGCATTAACACTTCATCGTAAAAAACAATATGCTCGTTTCAAGTGTTCCTAACATAACATTTCTTTGTTGTTGATAATGCGCGTGGAACAGAGGCAGGATCATTGATGGAGAAGTTGATTCCGAATTCTACATTGATACTCGAGCAAGCACAAGTGATGGTGAAGATACAATGTAAACAGTGGGAGCTTAGTGCATCGATTTGCAGATCACTTGTATCTTGTAGACTTAGCAAAAGAAAAGTTGTATCTTATCTGGAGTTCTCCTCAAGTTTGTGGATACAGAAACTAAGTTTCTGCAGAAGTGTTTTATAATCGATAAAGTAAATGTTTTAATTATCTTACATGTTTTTTGTGTTTCCTTTAT</genome_strand>
        <mrna_strand>TACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATAT......................................................................................................................................................................................................GAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTGTCCTTGAAAG....................................................................................................................................................AGGCAGGATCATTGATGGAGAAGTTGATTCCGAATTCTACATTGATACTCGAGCAAGCACAAGTGATGGTGAAGATACAATGTAAACAGTGGGAGCTTAGTGCATCGATTTGCAGATCACTTGTATCTTGTAGACTTAGCAAAAGAAAAGTTGTATCTTATCTGGAGTTCTCCCTCAGTTTGTGGATACAGAAACTAAGTTTCTGCAGAAGTGTTTTATAATCGATAAAGTAAATGTTTTAATTATCTTACATGGTTTTTGTGGTTCCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E555400" ref_strand="-" ref_description="SGN-E555400 [cTSC-2-N15]">
      <seq>aaaaaagaaatagaaaatctagctaaactatgaactattttgttcaaacatctctaaatatacataaaatcgacatgatccaacaagcttgagagcttccaaacatcttcacacgtcactgctatctctcatgaagtggtcactcatttctggatctaatcagcaacatttttcagagacaaataaaatctgcactctcttccatccgtaactcaattaaccattttcctaatggtaatttcaaattcatgatgagaaatgatgaaatcgtaaatttgacacttctgaattaacaagaaacgcattacatttgcactaaactaataaaaattacgtatttactacctataaaaaaggtgagattttcacttgtaggatatttagccatgtcaaatgaaagatcgggatttaacatagctagatctagtcattcaacaaaaaaataaaaaataaaaggggaaaaattgtaccttggtaataagttgatcagcacgggcaagtttggttttgcagaatttgcaattgaaggttttgccttcaagatcctgaaaaactaatcgccccattttcacttcactcggcctcaatttccccaaaatgaaacccttcttaaagaagggatgatacataaatgtgtttttaatgtagcttaagaaaatatttatgcccttcacttttaattatgtataaatagacacttaagcttgtataaattaaacaaatagatccattcgtcttagtatggaagacaaattaaaagatatatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="79898" stop="67545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79598" g_stop="78874" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78873" i_stop="78119" i_length="755">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78118" g_stop="78073" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="771" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E555400" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555400" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="79598" e_stop="78874"/>
          <exon e_start="78118" e_stop="78073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAATAGAAAATCTAGCTAAACTATGAACTATTTTGTTCAAACATCTCTAAATATACATAAAATCGACATGATCCAACAAGCTTGAGAGCTTCCAAACATCTTCACACGTCACTGCTATCTCTCATGAAGTGGTCACTCATTTCTGGATCTAATCAGCAACATTTTTCAGAGACAAATAAAATCTGCACTCTCTTCCATCCGTAACTCAATTAACCATTTTCCTAATGGTAATTTCAAATTCATGATGAGAAATGATGAAATCGTAAATTTGACACTTCTGAATTAACAAGAAACGCATTACATTTGCACTAAACTAATAAAAATTACGTATTTACTACCTATAAAAAAGGTGAGATTTTCACTTGTAGGATATTTAGCCATGTCAAATGAAAGATCGGGATTTAACATAGCTAGATCTAGTCATTCAACAAAAAAATAAAAAATAAAAGGGGAAAAATTGTACCTTGGTAATAAGTTGATCAGCACGGGCAAGTTTGGTTTTGCAGAATTTGCAATTGAAGGTTTTGCCTTCAAGATCCTGAAAAACTAATCGCCCCATTTTCACTTCACTCGGCCTCAATTTCCCCAAAATGAAACCCTTCTTAAAGAAGGGATGATACATAAATGTGTTTTTAATGTAGCTTAAGAAAATATTTATGCCCTTCACTTTTAATTATGTATAAATAGACACTTAAGCTTGTATAAATTAAACAAATAGATCCATTCGTCTTAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCTATACAAAAGGTGAAATTTTTTACTTGTACCAAAAAGTGATCAGGATGTACCAAAAACCATGTCAAATGAAAGATCAGGATGTACAAAAAACCATATAAAATGAAAGATCGGGATTTTACACAGCTAGATCTAGTCAATCAACCAAAAATAATAAAAAGGGGAAAAATTGTACCTTTGAAACAAGTGAACCAACGTGACCAAGTTTGGCATCGCAGAATTTGCAATTGTAAGTTTTGCCATCAGGATGCACCAAAAATAATCTCCCCATTTTTCACTTCACACAGCCTCAATTTCCCCAAATCGAAACCCTTCTTATAGAATGGATGAAAAGTACAAGGCTTAGAGGGGTTTTAAGGATTTAGAGTTAAGCCCACAGAAGTGAGTGTTAAATTCCATAAAAACAAAGTAGAAACCGGCTTATTTTTACATGTGGCGCAGATTTTGTTTTACTAACTTCAAAGCCACCTAATCTTATCTTTTAGTGTTGTTCAAATGTATAAAAAAGATCTATCAGTATTTTATTGCGTAATACATAAACGTGTTTTAAATGAAGGTTAAGCAAATATTTATGCCCTTCGCTTTTAATTATGTATAAATAGACACTTAAGCTTGTATAAATTAAACAAATAGATCCATTCGTCTTAGTATGGAAGACAAATTAAAAGATATATTTATA</genome_strand>
        <mrna_strand>AAAAAAGAAATAGAAAATCTAGCTAAACTATGAACTATTTTGTTCAAACATCTCTAAATATACATAAAATCGACATGATCCAACAAGCTTGAGAGCTTCCAAACATCTTCACACGTCACTGCTATCTCTCATGAAGTGGTCACTCATTTCTGGATCTAATCAGCAACATTTTTCAGAGACAAATAAAATCTGCACTCTCTTCCATCCGTAACTCAATTAACCATTTTCCTAATGGTAATTTCAAATTCATGATGAGAAATGATGAAATCGTAAATTTGACACTTCTGAATTAACAAGAAACGCATTACATTTGCACTAAACTAATAAAAATTACGTATTTACTACCTATAAAAAAGGTGAGATTTTCACTTGTAGGATATTTAGCCATGTCAAATGAAAGATCGGGATTTAACATAGCTAGATCTAGTCATTCAACAAAAAAATAAAAAATAAAAGGGGAAAAATTGTACCTTGGTAATAAGTTGATCAGCACGGGCAAGTTTGGTTTTGCAGAATTTGCAATTGAAGGTTTTGCCTTCAAGATCCTGAAAAACTAATCGCCCCATTTTCACTTCACTCGGCCTCAATTTCCCCAAAATGAAACCCTTCTTAAAGAAGGGATGATACATAAATGTGTTTTTAATGTAGCTTAAGAAAATATTTATGCCCTTCACTTTTAATTATGTATAAATAGACACTTAAGCTTGTATAAATTAAACAAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATTCGTCTTAGTATGGAAGACAAATTAAAAGATATATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354341" ref_strand="+" ref_description="SGN-E354341 [cTOS-17-C23]">
      <seq>caaaacttacaattgcaaattctgcgatgccaaacttggtcacgttggttcacttgtttcaaagtttttcaggatcttgaaggcaaaaccttcaattgcaaattctgcaaaaccaaacttgcccgtgctgatcaacttattaccaaggaaaatggttaattgagttacggatggaagagagtgcagattttatttgtctctgaaaaatgttgctgattagatccagaaatgagtgaccacttcatgagagatagcagtgacgtgtgaagatgtttggaagctctcaagcttgttggatcatgtcgattttatgtatatttagagatgtttgaacaaaatagttcatagtttagctagattttctatttcttttttgaaggagatctcttgggagaggtttttcccaaattggattgtgcatgatgctaagggtacattgaatttcgtagtttttgatgcaataatatgaagtgttaattttcgttgaannnnnnaanannnnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="76374" stop="126901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="78576" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78577" i_stop="79045" i_length="469">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79046" g_stop="79128" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="147" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79129" i_stop="79370" i_length="242">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.082" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79371" g_stop="79750" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="526" r_length="379" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79751" i_stop="79929" i_length="179">
            <donor d_prob="0.802" d_score="0.40"/>
            <acceptor a_prob="0.258" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79930" g_stop="79934" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="531" r_length="5" r_score="0.400"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79935" i_stop="80172" i_length="238">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.695" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80173" g_stop="80191" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="550" r_length="19" r_score="0.474"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E354341" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="78576"/>
          <exon e_start="79046" e_stop="79128"/>
          <exon e_start="79371" e_stop="79750"/>
          <exon e_start="79930" e_stop="79934"/>
          <exon e_start="80173" e_stop="80191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTACAATTGCAAATTCTGCGATGCCAAACTTGGTCACGTTGGTTCACTTGTTTCAAAGGTACAATTTTTCCCCTTTTTATTATTTTTGGTTGATTGACTAGATCTAGCTGTGTAAAATCCCGATCTTTCATTTTATATGGTTTTTTGTACATCCTGATCTTTCATTTGACATGGTTTTTGGTACATCCTGATCACTTTTTGGTACAAGTAAAAAATTTCACCTTTTGTATAGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTAAGACGAATGGATCTATTTGTTTAATTTATACAAGCTTAAGTGTCTATTTATACATAATTAAAAGTGAAGGGCATAAATATTTTCTTAAGCTACATTAAAAACACATTTATGTATCATCCCTTCTTTAAGAAGGGTTTCATTTTGGGGAAATTGAGGCCGAGTGAAGTGAAAATGGGGCGATTAGTTTTTCAGGATCTTGAAGGCAAAACCTTCAATTGCAAATTCTGCAAAACCAAACTTGCCCGTGCTGATCAACTTATTACCAAGGTACAATTTTTCCCCTTTTATTTTTTATTTTTTTGTTGAATGACTAGATCTAGCTATGTTAAATCCCGATCTTTCATTTGACATGGCTAAATATCCTACAAGTGAAAATCTCACCTTTTTTATAGGTAGTAAATACGTAATTTTTATTAGTTTAGTGCAAATGTAATGCGTTTCTTGTTAATTCAGAAGTGTCAAATTTACGATTTCATCATTTCTCATCATGAATTTGAAATTACCATTAGGAAAATGGTTAATTGAGTTACGGATGGAAGAGAGTGCAGATTTTATTTGTCTCTGAAAAATGTTGCTGATTAGATCCAGAAATGAGTGACCACTTCATGAGAGATAGCAGTGACGTGTGAAGATGTTTGGAAGCTCTCAAGCTTGTTGGATCATGTCGATTTTATGTATATTTAGAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTCTATTTCTTTTTTGAAGGAGATCTCTTGGGAGAGGTTTTTCCCAAATTGGATTGTGCATGATGCTAAGGGTACATTGAATTTCGTAGTTTTTGATGCAATAATATGAAGTGTTAATTTTCGTTGAAAAAGTTCATGAATCTGACAAGTTTAATGTTGGTTGCCAAGCATACATTAACCCTCCTCTTTTGTTTAAGCGTGAAACTCATTAAACACGTTCTTTTAGATAAGAACTCAATTGTAGATTCTTCTTTTCTACGTGTGCTAAAAGCAAAGTTGCATTTGGGATCTGGAGGTTTGGGGATGCAACTATTCTTTGAAGATAGACATCTTGCTATTTAAACAGGGAAGGTAGTCTTCTCTTTTATAAGTTAATAAAACAAAAATCTGCGCCACATGTATAAATAAGCCGGTTTTCTACTTTGTTTTTATGGAATTTAACACTCAATTCTGTGGGCTTAACTCCAAATCCTTAAAACCCCTCTAAGCCTTGTACTTTTCATCCATTCTATAAGAAGTGTTTCGGTTTGGGGAAATTGAGGCTGTGTTAAGTGAAAAATGGGGAGATTATTTTTGGTGCATCCTGAAGGCAAAACTTACAATTGCAA</genome_strand>
        <mrna_strand>CAAAACTTACAATTGCAAATTCTGCGATGCCAAACTTGGTCACGTTGGTTCACTTGTTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAGGATCTTGAAGGCAAAACCTTCAATTGCAAATTCTGCAAAACCAAACTTGCCCGTGCTGATCAACTTATTACCAAG..................................................................................................................................................................................................................................................GAAAATGGTTAATTGAGTTACGGATGGAAGAGAGTGCAGATTTTATTTGTCTCTGAAAAATGTTGCTGATTAGATCCAGAAATGAGTGACCACTTCATGAGAGATAGCAGTGACGTGTGAAGATGTTTGGAAGCTCTCAAGCTTGTTGGATCATGTCGATTTTATGTATATTTAGAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTCTATTTCTTTTTTGAAGGAGATCTCTTGGGAGAGGTTTTTCCCAAATTGGATTGTGCATGATGCTAAGGGTACATTGAATTTCGTAGTTTTTGATGCAATAATATGAAGTGTTAATTTTCGTTG-AANNNNNNAANANNNNNANAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................AAAAA..............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351317" ref_strand="+" ref_description="SGN-E351317 [cTOS-6-P16]">
      <seq>caaaacttacaattgcaaattctgcgatgccaaacttggtcacgttggttcacttgtttcaaagtttttcaggatcttgaaggcaaaaccttcaattgcaaattctgcaaaaccaaacttgcccgtgctgatcaacttattaccaaggaaaatggttaattgagttacggatggaagagagtgcagattttatttgtctctgaaaaatgttgctgattagatccagaaatgagtgaccacttcatgagagatagcagtgacgtgtgaagatgtttggaagctctcaagcttgttggatcatgtcgattttatgtatatttagagatgtttgaacaaaatagttcatagtttagctagattttctatttcttttttgaaggagatctcttgggagaggtttttcccaaattggattgtgcatgatgctaagggtacattgaatttcgtagtttttgatgcaataatatgaagtgttaattttcgttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="76374" stop="80012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="78576" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78577" i_stop="79045" i_length="469">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79046" g_stop="79128" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="147" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79129" i_stop="79370" i_length="242">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.082" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79371" g_stop="79712" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="489" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E351317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="78576"/>
          <exon e_start="79046" e_stop="79128"/>
          <exon e_start="79371" e_stop="79712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTACAATTGCAAATTCTGCGATGCCAAACTTGGTCACGTTGGTTCACTTGTTTCAAAGGTACAATTTTTCCCCTTTTTATTATTTTTGGTTGATTGACTAGATCTAGCTGTGTAAAATCCCGATCTTTCATTTTATATGGTTTTTTGTACATCCTGATCTTTCATTTGACATGGTTTTTGGTACATCCTGATCACTTTTTGGTACAAGTAAAAAATTTCACCTTTTGTATAGGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTAAGACGAATGGATCTATTTGTTTAATTTATACAAGCTTAAGTGTCTATTTATACATAATTAAAAGTGAAGGGCATAAATATTTTCTTAAGCTACATTAAAAACACATTTATGTATCATCCCTTCTTTAAGAAGGGTTTCATTTTGGGGAAATTGAGGCCGAGTGAAGTGAAAATGGGGCGATTAGTTTTTCAGGATCTTGAAGGCAAAACCTTCAATTGCAAATTCTGCAAAACCAAACTTGCCCGTGCTGATCAACTTATTACCAAGGTACAATTTTTCCCCTTTTATTTTTTATTTTTTTGTTGAATGACTAGATCTAGCTATGTTAAATCCCGATCTTTCATTTGACATGGCTAAATATCCTACAAGTGAAAATCTCACCTTTTTTATAGGTAGTAAATACGTAATTTTTATTAGTTTAGTGCAAATGTAATGCGTTTCTTGTTAATTCAGAAGTGTCAAATTTACGATTTCATCATTTCTCATCATGAATTTGAAATTACCATTAGGAAAATGGTTAATTGAGTTACGGATGGAAGAGAGTGCAGATTTTATTTGTCTCTGAAAAATGTTGCTGATTAGATCCAGAAATGAGTGACCACTTCATGAGAGATAGCAGTGACGTGTGAAGATGTTTGGAAGCTCTCAAGCTTGTTGGATCATGTCGATTTTATGTATATTTAGAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTCTATTTCTTTTTTGAAGGAGATCTCTTGGGAGAGGTTTTTCCCAAATTGGATTGTGCATGATGCTAAGGGTACATTGAATTTCGTAGTTTTTGATGCAATAATATGAAGTGTTAATTTTCGTTGAAA</genome_strand>
        <mrna_strand>CAAAACTTACAATTGCAAATTCTGCGATGCCAAACTTGGTCACGTTGGTTCACTTGTTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAGGATCTTGAAGGCAAAACCTTCAATTGCAAATTCTGCAAAACCAAACTTGCCCGTGCTGATCAACTTATTACCAAG..................................................................................................................................................................................................................................................GAAAATGGTTAATTGAGTTACGGATGGAAGAGAGTGCAGATTTTATTTGTCTCTGAAAAATGTTGCTGATTAGATCCAGAAATGAGTGACCACTTCATGAGAGATAGCAGTGACGTGTGAAGATGTTTGGAAGCTCTCAAGCTTGTTGGATCATGTCGATTTTATGTATATTTAGAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTCTATTTCTTTTTTGAAGGAGATCTCTTGGGAGAGGTTTTTCCCAAATTGGATTGTGCATGATGCTAAGGGTACATTGAATTTCGTAGTTTTTGATGCAATAATATGAAGTGTTAATTTTCGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272721" ref_strand="+" ref_description="SGN-E272721 [cLEM-21-M14]">
      <seq>tttttggtacatcctgatcactttttggtacaagtaaaaaatttcaccttttgtataggtantaatgaattgttttatgttgttcagtgcaaatgtaatgcttttcttgttaatttagaagtttcaaattttacgaatttgtttcggtttcaatttttttttacgaatttctcaatcctcatcatgaatttcaattgaccattaggaaaatggttgattgagttagggatggtagtgtgaagattgtatttgactctaaaaaattgttgttgaaatgatccagaaatgagtgactacttcactaaagatagaagtgacgtgtgaagacacttggaagctttcaagcatgttggatcatgtcgattttatgtatattcatagatgtttgaacaaaatagttcatagtttagctagattttttatttctttgttgaagcagatctcttgggagaggttttttccaagttggatcctgcatgatgctaaggggtacatttaaattttgtagtcgttgatgcaataatacagattgtttagtttcagtgaaaaagttcatgaatctgacgagttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="80054" stop="81228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80354" g_stop="80928" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E272721" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80354" e_stop="80928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGTACATCCTGATCACTTTTTGGTACAAGTAAAAAATTTCACCTTTTGTATAGGTAGTAATGAGTTGTTTTATGTTGTTCAGTGCAAATGTAATGCTTTTCTTGTTAATTTAGAAGTTTCAAATTTTACGAATTTGTTTCGGTTTCAATTTTTTTTTACGAATTTCTCAATCCTCATCATGAATTTCAATTGACCATTAGGAAAATGGTTGATTGAGTTAGGGATGGTAGTGTGAAGATTGTATTTGACTCTAAAAAATTGTTGTTGAAATGATCCAGAAATGAGTGACTACTTCACTAAAGATAGAAGTGACGTGTGAAGACACTTGGAAGCTTTCAAGCATGTTGGATCATGTCGATTTTATGTATATTCATAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTTTATTTCTTTGTTGAAGCAGATCTCTTGGGAGAGGTTTTTTCCAAGTTGGATCCTGCATGATGCTAAGGGGTACATTTAAATTTTGTAGTCGTTGATGCAATAATACAGATTGTTTAGTTTCAGTGAAAAAGTTCATGAATCTGACGAGTTTTATG</genome_strand>
        <mrna_strand>TTTTTGGTACATCCTGATCACTTTTTGGTACAAGTAAAAAATTTCACCTTTTGTATAGGTANTAATGAATTGTTTTATGTTGTTCAGTGCAAATGTAATGCTTTTCTTGTTAATTTAGAAGTTTCAAATTTTACGAATTTGTTTCGGTTTCAATTTTTTTTTACGAATTTCTCAATCCTCATCATGAATTTCAATTGACCATTAGGAAAATGGTTGATTGAGTTAGGGATGGTAGTGTGAAGATTGTATTTGACTCTAAAAAATTGTTGTTGAAATGATCCAGAAATGAGTGACTACTTCACTAAAGATAGAAGTGACGTGTGAAGACACTTGGAAGCTTTCAAGCATGTTGGATCATGTCGATTTTATGTATATTCATAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTTTATTTCTTTGTTGAAGCAGATCTCTTGGGAGAGGTTTTTTCCAAGTTGGATCCTGCATGATGCTAAGGGGTACATTTAAATTTTGTAGTCGTTGATGCAATAATACAGATTGTTTAGTTTCAGTGAAAAAGTTCATGAATCTGACGAGTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326808" ref_strand="+" ref_description="SGN-E326808 [cTOC-25-A7]">
      <seq>aaagcatgtgcagtttgctacgataatggatgctatatatctatggggttgagtgtgttgggcaccttccagatcctttcaccataccaaacgaaactcctttccttcttccaaatcctaattcacaatctgcagattttccgatattgatcgcaattatcgattcgttcatctgcggcttgctttttgctattccaattttgttaacaaagaagaagaagaagcaaatcggaacacaatgggagaacgcaagtctttatctaacaaaaaatcttccaaaaagaagagactcaaagtttcttctaagatacggaagagaaaaagcacaagaaacaaatccaagaagttgtccagttctgaggatgactcatcatcttctgcttcctctgattattctagcagctcacagtctttgtcctccaattcagaggttgattatagtaggaaaaagcgtatgcactcacgagatatgaaacgcgtgaataaaagaacttggagaagatcctctaaccaagatgtgaatgagggctcaccccctgtaaagaaaagaagaaggtcaaatagaaagagtcttgattatgggagaaaagtgcagaagaaaaagcgaaagagacacgctagtattagctccacgaacagtgactcaagaagttgatctagttgtcaacgtgaaaacagtgttagctccagaagtagagattttaagagcttttccacttgccgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="84417" stop="87186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84717" g_stop="85023" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85024" i_stop="86466" i_length="1443">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86467" g_stop="86886" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="727" r_length="420" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E326808" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84717" e_stop="85023"/>
          <exon e_start="86467" e_stop="86886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGGTGCAGTTTGCTACGATAATGGATGCTATATATCTATGGGGTTGAGTGTGTTGGGCACCTTCCAGATCCTTTCACCATACCAAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAGGTATTTTTTTCAACTCTCCTTTTCGATGCTTTCCATTTTTTCACATAATTACATTCGTTTTGCTTGCTCAGCATTATGTATAATGTTCGTGTATGGTTTGTTGCTTTTTTTTTTCTATTTAGTTTTGAATTTCTGTGTATAGCTATGTATTTTAGGGTTTATCTTCATTGATAGGTTATTGAACTATGAGAATGTATTCGGTAAAGTCATTGAACTTTATTTTGTATCAAATAAAATGGTTTTTATTTCAATATTCGTAAAAGATCATTGAGCTATGAGAATTCTTCGTTGATTTGGTTGGCTTATGTTTTTTTTTGTTTTCTGAATTAATTTTTGTGATTTAATTGAATATGTGCTAATGTCCTTTTGTAGTGATGCTCGTAGTTCTCTTTTTACTGGTAGTGGAATTAGGAAAATGAATTAAAGATAATGGTTAGTTATCTGCTATGTTGCTTGGACTCTCCAAAAATGTTTGTTGCACCCATGTTGGATCCTCCCAAAATACACTAGTTTTTGGAGGATACAACACACACCCAGCAGCATTTTTGAAGTGTCCGAACAATACAAGTTATATGCACCCTCTGTTGAACGCAAGTCCAAGCAACATATGGTAATTAGCTGGTTTAACTTTTGGGTCTTTTCATGTATGTATCATCAGGGGATTTTTTTTCGGGATGAAAATTAAGATAGCCGTTCTTTTAGCTAAAAATTAAAATGAAACTGTTTTCCAAGAACAAGGGTCAAAAAGTAGTTCAGAAGTTTGGTTTTTTGGGTACAATACTTACATGAGTTTACATTACTGAATTGGGAGAATATAAGTCCTGCTCCTTCCTGTTTGTTTTGAAGGGATTATTTTCATGTAAATTTGTTAAAAATACGTTCATATTCAAATCTGTAATACGGTAAGGCTTCATGTGATATAGCTCATGATTGCTCGTGGGAGTGTTAAGTCACATAGTCATTTGAATTGCTATAGTTAGAGTTCCATGAATCGGTTATTTTCTTTGTATATTTTTTGTTTTGTGCACTATCCATAAAATGACCTCAGTGGAGAAAATCTAGAGTTATTTATGAAAAGAAACAATTATCTGCACCTGTTAATACTTGGTAACTTTTAGAAGCCACCATTGAAAAACAGATATCTAAGATATTTCAATTTGTAATTCCTTAACTGACACTCAGGTGAAAGAATTATGAAAGACTTTATAATGCTTGATCATGCCAGCACACTTTATACACTCTTTATTGAATATATCTAATACCAAATATTCACAGAGATGTTTTCATGAGAAATTGCATTATATTTTAAATCAATATTAGGCATGCTTTCTGTTGAACAATGTAAGGTGGTATCCTGCTTTCTTATCGATACATTCTCATCTTGTCTTTGGCAATTCCAATTTATTATCCTTCATTATACATCTTCATATGTTGTGTGGTTAGATACGGAAGAGAAAAAGCAGAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGTTCACAGTCTTTGTCCTCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGTTCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAGGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGAT</genome_strand>
        <mrna_strand>AAAGCATGTGCAGTTTGCTACGATAATGGATGCTATATATCTATGGGGTTGAGTGTGTTGGGCACCTTCCAGATCCTTTCACCATACCAAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGCTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAACAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAAGAGAAAAAGCACAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGCTCACAGTCTTTGTCCTCCAATTCAGAGGTTGATTATAGTAGGAAAAAGCGTATGCACTCACGAGATATGAAACGCGTGAATAAAAGAACTTGGAGAAGATCCTCTAACCAAGATGTGAATGAGGGCTCACCCCCTGTAAAGAAAAGAAGAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGATCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAAGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342148" ref_strand="+" ref_description="SGN-E342148 [cTOF-10-O18]">
      <seq>aaacgaaactcctttccttcttccaaatcctaattcacaatctgcagattttccgatattgatcgcaattatcgattcgttcatctgcggtttgctttttgctattccaattttgttaacaaagaagaagaagaagcaaatcggaacacaatgggagaacgcaagtctttatctaagaaaaaatcttccaaaaagaagagactcaaagtttcttctaaggtaaactacaaggtctacatccccaagagggctcctgctctgtccaggagaaaactcaatcggtgatgaggctcagttaaattttcatgccaatttaatttcatttgtagattattaatcaaatttggtgtgctgagactgagtcaggacttaggtgctagttggctgaattcagatgttcctgggacaaactacgatgtgaatgcttgtgtatcaaaaaacattttcctgcctgtgtagctatgagctcttttatcctcagaagaaagccgttacagtgatctttagctatgttttgtgtagaatagaagaaaagaacaaaattaagcatttcacaatgaagctctcgcattttcctcaattctgtgtcgttcttttctggatgtagttagtattttcccgtagttattgagaacagaattaagaggatattattgaccatttggctgcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="84505" stop="89528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84805" g_stop="85023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85024" i_stop="88776" i_length="3753">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88777" g_stop="89228" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="674" r_length="455" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E342148" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84805" e_stop="85023"/>
          <exon e_start="88777" e_stop="89228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAGGTATTTTTTTCAACTCTCCTTTTCGATGCTTTCCATTTTTTCACATAATTACATTCGTTTTGCTTGCTCAGCATTATGTATAATGTTCGTGTATGGTTTGTTGCTTTTTTTTTTCTATTTAGTTTTGAATTTCTGTGTATAGCTATGTATTTTAGGGTTTATCTTCATTGATAGGTTATTGAACTATGAGAATGTATTCGGTAAAGTCATTGAACTTTATTTTGTATCAAATAAAATGGTTTTTATTTCAATATTCGTAAAAGATCATTGAGCTATGAGAATTCTTCGTTGATTTGGTTGGCTTATGTTTTTTTTTGTTTTCTGAATTAATTTTTGTGATTTAATTGAATATGTGCTAATGTCCTTTTGTAGTGATGCTCGTAGTTCTCTTTTTACTGGTAGTGGAATTAGGAAAATGAATTAAAGATAATGGTTAGTTATCTGCTATGTTGCTTGGACTCTCCAAAAATGTTTGTTGCACCCATGTTGGATCCTCCCAAAATACACTAGTTTTTGGAGGATACAACACACACCCAGCAGCATTTTTGAAGTGTCCGAACAATACAAGTTATATGCACCCTCTGTTGAACGCAAGTCCAAGCAACATATGGTAATTAGCTGGTTTAACTTTTGGGTCTTTTCATGTATGTATCATCAGGGGATTTTTTTTCGGGATGAAAATTAAGATAGCCGTTCTTTTAGCTAAAAATTAAAATGAAACTGTTTTCCAAGAACAAGGGTCAAAAAGTAGTTCAGAAGTTTGGTTTTTTGGGTACAATACTTACATGAGTTTACATTACTGAATTGGGAGAATATAAGTCCTGCTCCTTCCTGTTTGTTTTGAAGGGATTATTTTCATGTAAATTTGTTAAAAATACGTTCATATTCAAATCTGTAATACGGTAAGGCTTCATGTGATATAGCTCATGATTGCTCGTGGGAGTGTTAAGTCACATAGTCATTTGAATTGCTATAGTTAGAGTTCCATGAATCGGTTATTTTCTTTGTATATTTTTTGTTTTGTGCACTATCCATAAAATGACCTCAGTGGAGAAAATCTAGAGTTATTTATGAAAAGAAACAATTATCTGCACCTGTTAATACTTGGTAACTTTTAGAAGCCACCATTGAAAAACAGATATCTAAGATATTTCAATTTGTAATTCCTTAACTGACACTCAGGTGAAAGAATTATGAAAGACTTTATAATGCTTGATCATGCCAGCACACTTTATACACTCTTTATTGAATATATCTAATACCAAATATTCACAGAGATGTTTTCATGAGAAATTGCATTATATTTTAAATCAATATTAGGCATGCTTTCTGTTGAACAATGTAAGGTGGTATCCTGCTTTCTTATCGATACATTCTCATCTTGTCTTTGGCAATTCCAATTTATTATCCTTCATTATACATCTTCATATGTTGTGTGGTTAGATACGGAAGAGAAAAAGCAGAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGTTCACAGTCTTTGTCCTCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGTTCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAGGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGATGAAAATAATAGTGTTAATAAGGACACCAATCTTCAGATTCCCAGGATTAAGTCTAGAAAAAAGATGAAAGAAAAGAAAATCCACAATGAGCCAAGCACTGGCAGAAGGAGCAGAAGTTGGGGGCCAGTTTGTTCTTTATGTGACCATCATTCATGTTCTTGCAATACTACTCATAATGGGGAGGAATATGTGGAAGAGAGTAATCCTAAGCGCTTAAGATCTGTTATTACTATTCCAGCAAAGACACATGAAGAAGAGGGTAACGAACAGGGACCAGATATGCTTAAAGAAGAGATTTTGAATAAGCACCATGATTGTCCTTCATGCACAAACCATGACAATAATGACCTGGAAATTAAAGGGAAATTAGCTTCTTGTTCTTGTTTCCCGTCTATCCAAAGAATGCAGGATGGAAATTTGACAATTGATGAAACCTTTGGCCCCACAAAAGTTGATGGTGGTCTGGATCCTCATCGAAATATAGTCAAAGAAGTAAGTCATGATAATGGAGGTGAGAGTGGGAATTCTGATAATATTGCTAATACAGGAATTGAAGATCTTGAGAATGTTTTAAGAAAAAAGGCGTTGGAGAACTTGCAGAAATTTCGTAAAGAGTTTCAAACAAATTTAAAATCTGGTGCCAAGGAAAAGAAGAATGGCAGTGATATTAATCAGTTATCCCCTCCAAAGACTGAAGTTGTACCATACAAGTCTCTGGAGCATGGGGAAAAAGATGGATTGGCTTTAAATCAAGATGTAAAATTTAGAAGCAAACTTGTAACTACTAAGGAATTTTCTCATTCCACAGAGATTGAGATAAATACTCCAGTCGAAAAGAATAATGGAAAAGGATCTGGTTGCTTTGAGCCGTGTGTTACACAACTTGCTGATAGATCAGCACTCTCACAGAGTCCAGAACAGGAGAACCATACCACTGAACCAGTTCTTAGCAATGAACCTGAACCTGGTAAACTATTATGTAGTACCACAGTACAGACATATAAAAAGGAAAATTCATTGGCTTCCAAGAGAAACATAATTAAAACACCAGTTCCCTTGAGACCTGGAGTTCTTAGCACTGGGACCAGCGATAACTTAGACATGGAAGCTGTTAATGCCGGTATCCGTCCCACTTTAGAAACTTCTAGTGCCAGATCCACATCTGATGGACTTGCTTCAAAACACCAGCCTGATGAAACCAAGGATGCCTCTGAGTTTGAACAAAAGACCATGTCTGTAATGAGGGGCGGTGAGATGGTACAGGTATTATATTCGTATTTCATTATTTATGCATGTTAGGCTGGGATTTTTCAACTCCACAGTTGATCAATAATCCTACAAGTAAATAAATAAATGGCCTGTATTTTTAGATTCTTTAAATTGTTTCTGATTGTTTAAACGATTGAATATTAGAGATATTGATAGAAATCATCAGTTATAATGAAGTAATAGTGACCACTAAGTAATTCTTATTATAGATTTTTTTTAGCAATAGCCAAACACTGATAGTGGGAATGGGGGAGCAAACTATTCTCTCTCACAGGCTTCTTATTTGGTAATCTTTCAAGGATTTACTCTACTGGAATTTCATTGCTAGAGATAGTACTAGCATATGTTTTCATATTTTGGACCTCTTGCCTCGGCCAAACAGATATGGTAATATACATTGCTTTGTTGTACTTATATGTTGCGTTTCGGCTAATCATTGGATTTACTTTTACCTGATTTTAATTATAGAAAAAAAACAAATGTGTGCTAATCTCCACTTATTTGGACTTTTAGATTTCTTTAACTTAGAATGTTTATGCGAGTCACTTGAAGCTCCTCTTATGTACCAAGTCTTTACAAAGCTTGAGTATTCTTACCATCTCACATGATTATGTTGGCCAGGTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTTTCCTGCCTGTGTAGCTATGAGCTCTTTTATCCTCAGAAGAAAGCCGTTACAGTGATCTTTAGCTATG-TTTGTGTAGAATAGAAGAAAAGAACAAAATTAAGCATTTCACAATGAAGCTCTCGCATTTTCCTC-ATTCTGTGTCGTTCTTTTCTGGATGTAGTTAGTATTTT-CCGTAGTTATTGAGAACAGAATTAAGAGGATATTATTGACCATTTGGCTGCAGTCT</genome_strand>
        <mrna_strand>AAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTTTCCTGCCTGTGTAGCTATGAGCTCTTTTATCCTCAGAAGAAAGCCGTTACAGTGATCTTTAGCTATGTTTTGTGTAGAATAGAAGAAAAGAACAAAATTAAGCATTTCACAATGAAGCTCTCGCATTTTCCTCAATTCTGTGTCGTTCTTTTCTGGATGTAGTTAGTATTTTCCCGTAGTTATTGAGAACAGAATTAAGAGGATATTATTGACCATTTGGCTGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365755" ref_strand="+" ref_description="SGN-E365755 [cLPT-8-J8]">
      <seq>tttcttcttccaaatcctaattcacaatctgcagattttccgatattgatcgcaattatcgattcgttcatctgcggtttgctttttgctattccaattttgttaacaaagaagaagaagaagcaaatcggaacacaatgggagaacgcaagtcttcatctaagaaaaaatcttccaaaaagaagagactcaaagtttcttctaagatacggaagagaaaaagcagaagaaacaaatccaagaagttgtccagttctgaggatgactcatcatcttctgcttcctctgattattctagcagttcacagtctttgtcctccgattcagaggttgattatagtacgaaaagacgtaggcactcacgtgatatgaaacgcgtgaagaaaagaactcggagaagatcctctagccaagatgtgagtgagggttcaccccctgtaaagaaaagataaaggtcaaatacaaagagtcttgattatgggagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="84518" stop="87049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84818" g_stop="85023" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85024" i_stop="86466" i_length="1443">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86467" g_stop="86749" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="489" r_length="283" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E365755" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84818" e_stop="85023"/>
          <exon e_start="86467" e_stop="86749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAGGTATTTTTTTCAACTCTCCTTTTCGATGCTTTCCATTTTTTCACATAATTACATTCGTTTTGCTTGCTCAGCATTATGTATAATGTTCGTGTATGGTTTGTTGCTTTTTTTTTTCTATTTAGTTTTGAATTTCTGTGTATAGCTATGTATTTTAGGGTTTATCTTCATTGATAGGTTATTGAACTATGAGAATGTATTCGGTAAAGTCATTGAACTTTATTTTGTATCAAATAAAATGGTTTTTATTTCAATATTCGTAAAAGATCATTGAGCTATGAGAATTCTTCGTTGATTTGGTTGGCTTATGTTTTTTTTTGTTTTCTGAATTAATTTTTGTGATTTAATTGAATATGTGCTAATGTCCTTTTGTAGTGATGCTCGTAGTTCTCTTTTTACTGGTAGTGGAATTAGGAAAATGAATTAAAGATAATGGTTAGTTATCTGCTATGTTGCTTGGACTCTCCAAAAATGTTTGTTGCACCCATGTTGGATCCTCCCAAAATACACTAGTTTTTGGAGGATACAACACACACCCAGCAGCATTTTTGAAGTGTCCGAACAATACAAGTTATATGCACCCTCTGTTGAACGCAAGTCCAAGCAACATATGGTAATTAGCTGGTTTAACTTTTGGGTCTTTTCATGTATGTATCATCAGGGGATTTTTTTTCGGGATGAAAATTAAGATAGCCGTTCTTTTAGCTAAAAATTAAAATGAAACTGTTTTCCAAGAACAAGGGTCAAAAAGTAGTTCAGAAGTTTGGTTTTTTGGGTACAATACTTACATGAGTTTACATTACTGAATTGGGAGAATATAAGTCCTGCTCCTTCCTGTTTGTTTTGAAGGGATTATTTTCATGTAAATTTGTTAAAAATACGTTCATATTCAAATCTGTAATACGGTAAGGCTTCATGTGATATAGCTCATGATTGCTCGTGGGAGTGTTAAGTCACATAGTCATTTGAATTGCTATAGTTAGAGTTCCATGAATCGGTTATTTTCTTTGTATATTTTTTGTTTTGTGCACTATCCATAAAATGACCTCAGTGGAGAAAATCTAGAGTTATTTATGAAAAGAAACAATTATCTGCACCTGTTAATACTTGGTAACTTTTAGAAGCCACCATTGAAAAACAGATATCTAAGATATTTCAATTTGTAATTCCTTAACTGACACTCAGGTGAAAGAATTATGAAAGACTTTATAATGCTTGATCATGCCAGCACACTTTATACACTCTTTATTGAATATATCTAATACCAAATATTCACAGAGATGTTTTCATGAGAAATTGCATTATATTTTAAATCAATATTAGGCATGCTTTCTGTTGAACAATGTAAGGTGGTATCCTGCTTTCTTATCGATACATTCTCATCTTGTCTTTGGCAATTCCAATTTATTATCCTTCATTATACATCTTCATATGTTGTGTGGTTAGATACGGAAGAGAAAAAGCAGAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGTTCACAGTCTTTGTCCTCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAG</genome_strand>
        <mrna_strand>TTTCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTCATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAAGAGAAAAAGCAGAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGTTCACAGTCTTTGTCCTCCGATTCAGAGGTTGATTATAGTACGAAAAGACGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTCGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGATAAAGGTCAAATACAAAGAGTCTTGATTATGGGAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265224" ref_strand="+" ref_description="SGN-E265224 [cLEI-2-H12]">
      <seq>tccaattcagaggttgattatagtaggaaaaggcgtaggcactcacgtgatatgaaacgcgtgaagaaaagaacttggagaagatcctctagccaagatgtgagtgagggttcaccccctgtaaagaaaagaaaaaggtcaaatagaaagagtcttgattatgggagaaaagtgcagaagaaaaagcgaaagagacacgctagtattagctccacgaacagtgactcaagaagttgttctagttgtcaacgtgaaaacagtgttagctccagaggtagagattttaagagcttttccacttgccgtgatgaaaataatagtgttaataaggacaccaatcttcagattcccaggattaagtctagaaaaaagatgaaagaaaagaaaatccacaatgagccaagcactggcagaaggagcagaagttgggggccagtttgttctttatgtgaccatcattcatgttcttgcaatactactcataatgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="86278" stop="87368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86578" g_stop="87068" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E265224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86578" e_stop="87068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGTTCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAGGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGATGAAAATAATAGTGTTAATAAGGACACCAATCTTCAGATTCCCAGGATTAAGTCTAGAAAAAAGATGAAAGAAAAGAAAATCCACAATGAGCCAAGCACTGGCAGAAGGAGCAGAAGTTGGGGGCCAGTTTGTTCTTTATGTGACCATCATTCATGTTCTTGCAATACTACTCATAATGGGGA</genome_strand>
        <mrna_strand>TCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGTTCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAGGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGATGAAAATAATAGTGTTAATAAGGACACCAATCTTCAGATTCCCAGGATTAAGTCTAGAAAAAAGATGAAAGAAAAGAAAATCCACAATGAGCCAAGCACTGGCAGAAGGAGCAGAAGTTGGGGGCCAGTTTGTTCTTTATGTGACCATCATTCATGTTCTTGCAATACTACTCATAATGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708405" ref_strand="+" ref_description="SGN-E708405 [FA35CG02]">
      <seq>cgatctggcagaaatttcgtaaagagtttcaaacaaatttaaaatctggtgccaaggaaaagaagaatggcagtgatattaatcagttatcccctccaaagactgaagttgtaccatacaagtctctggagcatggggaaaaagatggattggctttaaatcaagatgtaaaatttagaagcaaacttgtaactactaaggaattttctcattccacagagattgagataaatactccagtcgaaaagaataatggaaaaggatctggttgctttgagccgtgtgttacacaacttgctgatagatcagcactctcacagagtccagaacaggagaaccataccactgaaccagttcttagcaatgaacctgaacctggtaaactattatgtagtaccacagtacagacatataaaaaggaaaattcattggcttccaagagaaacataattaaaacaccagttcccttgagacctggagttcttagcactgggaccagcgataacttagacatggaagctgttaatgccggtatccgtcccactttagaaacttctagtgccagatccacatctgatggacttgcttcaaaacaccagcctgatgaaaccaaggatgcctctgagtttgaacaaaagaccatgtctgtaatgaggggcggtgagatggtacaggtaaactacaaggtctacatccccaagagggctcctgctctgtccaggagaaaactcaatcggtgatgaggctcagttaaattttcatgccaatttaatttcatttgtagattattaatcaaatttggtgtgctgagactgagtcaggacttaggtgctagttggctgaattcagatgttcctgggacaaactacgatgtgaatgcttgtgtatcaaaaaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="87177" stop="89302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87476" g_stop="88149" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88150" i_stop="88776" i_length="627">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88777" g_stop="89002" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="900" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E708405" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87476" e_stop="88149"/>
          <exon e_start="88777" e_stop="89002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTGCAGAAATTTCGTAAAGAGTTTCAAACAAATTTAAAATCTGGTGCCAAGGAAAAGAAGAATGGCAGTGATATTAATCAGTTATCCCCTCCAAAGACTGAAGTTGTACCATACAAGTCTCTGGAGCATGGGGAAAAAGATGGATTGGCTTTAAATCAAGATGTAAAATTTAGAAGCAAACTTGTAACTACTAAGGAATTTTCTCATTCCACAGAGATTGAGATAAATACTCCAGTCGAAAAGAATAATGGAAAAGGATCTGGTTGCTTTGAGCCGTGTGTTACACAACTTGCTGATAGATCAGCACTCTCACAGAGTCCAGAACAGGAGAACCATACCACTGAACCAGTTCTTAGCAATGAACCTGAACCTGGTAAACTATTATGTAGTACCACAGTACAGACATATAAAAAGGAAAATTCATTGGCTTCCAAGAGAAACATAATTAAAACACCAGTTCCCTTGAGACCTGGAGTTCTTAGCACTGGGACCAGCGATAACTTAGACATGGAAGCTGTTAATGCCGGTATCCGTCCCACTTTAGAAACTTCTAGTGCCAGATCCACATCTGATGGACTTGCTTCAAAACACCAGCCTGATGAAACCAAGGATGCCTCTGAGTTTGAACAAAAGACCATGTCTGTAATGAGGGGCGGTGAGATGGTACAGGTATTATATTCGTATTTCATTATTTATGCATGTTAGGCTGGGATTTTTCAACTCCACAGTTGATCAATAATCCTACAAGTAAATAAATAAATGGCCTGTATTTTTAGATTCTTTAAATTGTTTCTGATTGTTTAAACGATTGAATATTAGAGATATTGATAGAAATCATCAGTTATAATGAAGTAATAGTGACCACTAAGTAATTCTTATTATAGATTTTTTTTAGCAATAGCCAAACACTGATAGTGGGAATGGGGGAGCAAACTATTCTCTCTCACAGGCTTCTTATTTGGTAATCTTTCAAGGATTTACTCTACTGGAATTTCATTGCTAGAGATAGTACTAGCATATGTTTTCATATTTTGGACCTCTTGCCTCGGCCAAACAGATATGGTAATATACATTGCTTTGTTGTACTTATATGTTGCGTTTCGGCTAATCATTGGATTTACTTTTACCTGATTTTAATTATAGAAAAAAAACAAATGTGTGCTAATCTCCACTTATTTGGACTTTTAGATTTCTTTAACTTAGAATGTTTATGCGAGTCACTTGAAGCTCCTCTTATGTACCAAGTCTTTACAAAGCTTGAGTATTCTTACCATCTCACATGATTATGTTGGCCAGGTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTT</genome_strand>
        <mrna_strand>CGATCTGGCAGAAATTTCGTAAAGAGTTTCAAACAAATTTAAAATCTGGTGCCAAGGAAAAGAAGAATGGCAGTGATATTAATCAGTTATCCCCTCCAAAGACTGAAGTTGTACCATACAAGTCTCTGGAGCATGGGGAAAAAGATGGATTGGCTTTAAATCAAGATGTAAAATTTAGAAGCAAACTTGTAACTACTAAGGAATTTTCTCATTCCACAGAGATTGAGATAAATACTCCAGTCGAAAAGAATAATGGAAAAGGATCTGGTTGCTTTGAGCCGTGTGTTACACAACTTGCTGATAGATCAGCACTCTCACAGAGTCCAGAACAGGAGAACCATACCACTGAACCAGTTCTTAGCAATGAACCTGAACCTGGTAAACTATTATGTAGTACCACAGTACAGACATATAAAAAGGAAAATTCATTGGCTTCCAAGAGAAACATAATTAAAACACCAGTTCCCTTGAGACCTGGAGTTCTTAGCACTGGGACCAGCGATAACTTAGACATGGAAGCTGTTAATGCCGGTATCCGTCCCACTTTAGAAACTTCTAGTGCCAGATCCACATCTGATGGACTTGCTTCAAAACACCAGCCTGATGAAACCAAGGATGCCTCTGAGTTTGAACAAAAGACCATGTCTGTAATGAGGGGCGGTGAGATGGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745889" ref_strand="+" ref_description="SGN-E745889 [GI|47105513]">
      <seq>ggagtttccttgaagtatataagcatactaaaatagtatatggcgcaaaagtaacagagctaaattttcatcccatgacaatggtattaaattctcttcgcggtcatttcttcaaaaacctttcgtgcactaccagtagtataatcaccggccgtttcttcaacggccgccgcgttcaccggctaattccgttcattcatttatctaaatcctgtgctgcgcaaagatacaagcattggaagcgcatccagactgcagctaaattttccacgttatcttctccttcttcggagactccggctagtgattcattcacttctccatacctctctgttcgcatatgctgccaaaaggatgttgccgatatgctctcagaggctcttttatgttttggagccagttcaactactgtggatgaagaagaaagaagtgatgagattatcattacttccatcttttctgtatgcaaagatgtgaaagactgcatttcacttgctgctgattctatagggttgcaaaagatacctagttttgaggttacgatgcatgaccacactgattggataaaagctacacaggaattgttttgtccagtggaagttactgatggactctgggtggtgcctgaatggacaactcctccagatcctcaagcaacaaatataatcctaaatcctggtttggcatttggaactggggagcacccaacaactaagttgtgtctcctgctattgcgtgatttgataaaaggaggagaattcttcttggactatggaactggttcgggtgtgctagcaattgcagctcttaagtttggtgcagctttttcagttggttttgatatagatccccaggcaatcacatctgctcaatataatgctactttaaacaacattggacatgaagaattgcttttaaaacttgttcctggcaaaggaattcttccctctgcagattttagttcaagtatggacattgatcaaactgcctatgatgcagaagttctaaataacaggggaaaatatgacatcgttgtggcaaacatattattgaatcctctgcttgagttggcagatgagattgtgtcctatgcaaagcctggtgctacagttgctctttccgggatcatatctgagcagattcctcgcatactagaaaggtattcacaatacctagagaacattacagttacaaagatggatgactgggcttgcataagtggcttaaagaaatgacataacagcagctaaaggacaacgaatgttttctaatgttgtggaacttaagattctacaaaactacgggagtcagatgtagatcgagccctggaagtcctctcctcagccctcgcagctccctgcgtgaactttgcaagtcatttgactttctatgtgcatggccaattattcacctctgtattattcagccctggaaacagttgtaaaaaagccacctacctacttcactgattgctagttgaagtcatacttactgaaggttgtgtgaaaagagactgcctcaagtccccaactttatcagttatctagtttataaatggctctgtaaacgatatcttcagaagctatgaagtctattgaaaacagcttctacctcccattgtgtaggggtaaagtttgtgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="95002" stop="89250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94703" g_stop="94342" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94341" i_stop="93831" i_length="511">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93830" g_stop="93756" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="437" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93755" i_stop="93436" i_length="320">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.264" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93435" g_stop="93295" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="578" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93294" i_stop="92522" i_length="773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92521" g_stop="92456" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="644" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92455" i_stop="92180" i_length="276">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92179" g_stop="92012" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="812" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92011" i_stop="91048" i_length="964">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91047" g_stop="90721" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="1139" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90720" i_stop="90054" i_length="667">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90053" g_stop="89555" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1140" r_stop="1638" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1641" polyA_stop="1656"/>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E745889" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1638</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94703" e_stop="94342"/>
          <exon e_start="93830" e_stop="93756"/>
          <exon e_start="93435" e_stop="93295"/>
          <exon e_start="92521" e_stop="92456"/>
          <exon e_start="92179" e_stop="92012"/>
          <exon e_start="91047" e_stop="90721"/>
          <exon e_start="90053" e_stop="89555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTCCTTGAAGTATATAAGCATACTAAAATAGTATATGGCGCAAAAGTAACAGAGCTAAATTTTCATCCCATGACAATGGTATTAAATTCTCTTCGCGGTCATTTCTTCAAAAACCTTTCGTGCACTACCAGTAGTATAATCACCGGCCGTTTCTTCAACGGCCGCCGCGTTCACCGGCTAATTCCGTTCATTCATTTATCTAAATCCTGTGCTGCGCAAAGATACAAGCATTGGAAGCGCATCCAGACTGCAGCTAAATTTTCCACGTTATCTTCTCCTTCTTCGGAGACTCCGGCTAGTGATTCATTCACTTCTCCATACCTCTCTGTTCGCATATGCTGCCAAAAGGATGTTGCCGTAAGTGAATATTCTCAGTTTACTGTTTTCTCTAGCTTGTTATGCTTATTTTACGTGTCTCTGCGTACATACAAGTTGTCAAGTGAACAATTAAATTGTTATATAGGCCGTAGTTCATATACTATTGATGTTGATAAGGAATGCTGAATTTCGAGCATCAGCAGAGTGCCAAAAATTACTACACTAGTTAGTGCATTATGGAATAGGTGCGAACTTGGTGAATTACTTCATTTTTGCAGAAGTATTAAATTATGTGTAGTTTGAGTAGTTGAGTCGAAGACGGTGGATGCATAGGCTGTGTGAAAACATACATACGCCTTCGCGCCTTAGGAAATTTGGAGACTGAAACTGTCATGTAACTTCAGTTGTGTTATGTCAATTTAGAGCTCTGGTAGTTCGTGCTCAATCATCTAAATGATCAGTGACTGTGTAATACGATGTAGAAATTACAGGTAGTAAGTACAGCATATATCAAATTGAGCTTGAACTTCTATTTCTGTTTTATTATTAGGATATGCTCTCAGAGGCTCTTTTATGTTTTGGAGCCAGTTCAACTACTGTGGATGAAGAAGAAAGAAGTGATGAGGTAGGACGAATCAAAAAAGGCTTTTGATGTTTATGCATCTGTTTCTGTGTGCATGCATTTAACTTCTTTTCGCAACTGGATATGCGTAGTGGTTCTTTTTATGCATCTTACTGGAGAACCAGTAGCATAACTTGCTCTTCTGGGTAAATTCAATTTGAGGTGTTCAGAGCTGTTTAACTTTCAGTCGTGTGAGGTGGAGTTTATCATCGTTAAACTTCAGTTGATATTTAGTAGTTACTCCCCGAATATGTTTGACTGGTTTCTTTCAAACTTCTGATTTGTATTTATTAACTTTATTTTCCCTTTCTCCTACCTCCCAGATTATCATTACTTCCATCTTTTCTGTATGCAAAGATGTGAAAGACTGCATTTCACTTGCTGCTGATTCTATAGGGTTGCAAAAGATACCTAGTTTTGAGGTTACGATGCATGACCACACTGATTGGATAAAAGCTACACAGGTCAACATTCTTTCCCTTGCTAATGACTATTGTGTAGTGTAGTAATATAAGAAATATTATATTGATCTTTCATCTGCGTATTTATACCTAGCAAAATACATGCACTGATAATCTTGGTTTGATAAGGGCTTCAAATCTTCTTTTTTCTCCAAGACTAATAGCAACCAGCAAGATTATGATCAATTACCAACTTTTACGGTCTTTATGGACATGCAATCAAGTTGCAGTCCAGAGTCAATATCTGCAAATTTCAAATGTGCTACTTGCCAACTCTTCTCTTATTACTAATGAGTATTAAAAATGAACATGAAGCTAGATAACGTCTGTGTCTTGTTTATCATGTCCATTTCTTGTTAAAAAGCATGAAATGAGAATGAGTTGTTTTGAAAATGCGGGTGACCAAATAATGATTATCCTCTTAAAAGGCCCCTTTAGATCATCTTTGACATTTAACCAGTAGTTTAATAACCTGGCAAATCTCCCTGACCCTTGCATGTTTTAGTGAGTTACTAATGATGAGGTAGGTATCTAGACGGATTGGTTCTTTACCAATCCGTTGGAAGCTTGCAGGTAAATGCGATGAATTGATGTTATGATGCCACTATATTCCTGTATCTCTTAATTTCAACTGCGTGTTTGGAAGCTAATAGAGCTTCTGACATCATTCTGTTACCAAGTCATGGGGTCTATATGTGGCACATGTTATCGTCTTGGTGACTGGTTGAACCAGCTGAGTTAATTTAGATCTTTCAACCATTGTCAATTTATTGCAGGAATTGTTTTGTCCAGTGGAAGTTACTGATGGACTCTGGGTGGTGCCTGAATGGACAACTCCTCCAGTATGACTATACCTCTCTCTCCCTTTGTTCTTATCACATGATTCAATTGGTTCTACACTCAGGACCACAATTCAAAGCATTGTGTTATTCAATCAAAACTTTCATATTATTGTCTCATGATTCTGCGGTCTTCCCTTTTTTAGTTTTCTTGGTTGTTGATCATGAATCCCAGTCTGCACATTGTCATCTTTCCTCCATAAGCAATACTTCATACATATCTATAATATGTGTATGTTCTGTATATATAAGTATAAAGAGTGTGTGCTTGAATTGTAGGATCCTCAAGCAACAAATATAATCCTAAATCCTGGTTTGGCATTTGGAACTGGGGAGCACCCAACAACTAAGTTGTGTCTCCTGCTATTGCGTGATTTGATAAAAGGAGGAGAATTCTTCTTGGACTATGGAACTGGTTCGGGTGTGCTAGCAATTGCAGCTCTTAAGGTACTAGGATTTTCATTCAAACCTTGCATCGCTAAAGCTAATGAACTGATTCCTTGTAAATGAAGTTCCAGCTAAAACTTATCCTTTACTCACTGAATCCAGGACTTGCTCTCTCTGTCAAAAGAATTGATCTTGATAATTTTAGTAACATAATTAAGGAACAAAGTCCGACGCAAAAATCATGATGAACGTCAAAACTTCTGGCACTTGAATAATAGAGACGTGAGCCTCAAACTAAATCCTTTGAACTTTATGAAGTGATAGGTCGGAAAAGGTGGCAGTAGGCCAGTAGCTGTGGCAAAGGACCAGGAAATGCACTGATTTAGACATAGGGGTGGTGGATGTGACTAATAGATGAGGAACAATTTTCAACTTCTATTTTCTTCTTTTATTGCTGGATCATTTTTGGTATTTTAAGGGCTTGCTTCTTTCTTTCGATTATGTGGAACTTTCACTTCTTAACAAGTGGATGGAAGTTGAGAAGATAGATTTAGAAAGCTTTGGTTTTGTATAGGATCAAAGTTGGAAGAGAAAAAATGTTCAATGTTAGCCGGAAACTCGAGAGGGTCGCCTTTGGAGAAGCGTTTGCCGGTAACCAAAGCCTCACTCTGATTATATCGTGAGGCTGACGGAATCCAATCCATAAATCCGGAAATGAAACGTTGAACCTGATTCGATAAAATAGTTGGAGAAGCACAAACATTAGTACTTTGAACTAAACTTGATTTTTCTTGAAAAAACATATTTTCTGAAAAATGCATTCTGTGAACAACAGATAAATAACTGTACCTGAAACAAAATCAAAATTCTTAATCTGTAGGAGATTCCATAAAATTCACGGGCTGTCTACTTTTCACAACTTAAACCTGATTTCCTTTTGAAACCTCAAACTTTTAGTTTTTTGAACTCGTCATTTAGTATCATGGTGTTGCTAATATCTTCATTGTCAAATATTTATCTGCAGTTTGGTGCAGCTTTTTCAGTTGGTTTTGATATAGATCCCCAGGCAATCACATCTGCTCAATATAATGCTACTTTAAACAACATTGGACATGAAGAATTGCTTTTAAAACTTGTTCCTGGCAAAGGAATTCTTCCCTCTGCAGATTTTAGTTCAAGTATGGACATTGATCAAACTGCCTATGATGCAGAAGTTCTAAATAACAGGGGAAAATATGACATCGTTGTGGCAAACATATTATTGAATCCTCTGCTTGAGTTGGCAGATGAGATTGTGTCCTATGCAAAGCCTGGTGCTACAGTTGCTCTTTCCGGGATCATATCTGAGCAGGTATTTACATTCTGTTTTATTGTTGAACTGTCGAGTGAATAAGGCTTGAGGATACATTTGCTAATTGATTTGCTGGCACCACAAAGAATGAGGGAAAACTATAAGAATAATGCTGTCGTCTGATATTAGCCATTATTTGCTTAACATCATCATCCATTACCCATAAAAGATAATAACTAACACCCTATACTTCATCCTTCTTTTTTCGTGTCTGAAGTTAAAACTCTATTTCATAGCAAACGATAAGAGTAAAACATGTATATGACAATACTCTACTTTTATCATCTTTTTGATAGTCACAGGTTCTATAACTTCCTTTGCTATTTGTTGTTCCTGGATTTTCAAATGACATGACTCTCGCTCTCAGTAATTTAATACTCATATCTAGTTCCTGAAATTTGTGTGCGCTTAATGATTGTCAACAATTTCCTCTCAATTATTCAATTCATCCATTGACATATTTTTCTAATGAAATTACAAACAGTAAATGTTTTAACTAAAAAAATAAGGTATTAGTAGAATTATGTGCATACGAATGAGACTACAACTATGGATGTAGATTATTATATCTGTGTTTTGTTTTTGTGAAACAAGAAAAAAAATCGCAGGTGTACCTATTGCGATATTTGCATTATTGATTTCTCAATGTGATGAAATTCTTCTGCAGATTCCTCGCATACTAGAAAGGTATTCACAATACCTAGAGAACATTACAGTTACAAAGATGGATGACTGGGCTTGCATAAGTGGCTTAAAGAAATGACATAACAGCAGCTAAAGGACAACGAATGTTTTCTAATGTTGTGGAACTTAAGATTCTACAAAACTACGGGAGTCAGATGTAGATCGAGCCCTGGAAGTCCTCTCCTCAGCCCTCGCAGCTCCCTGCGTGAACTTTGCAAGTCATTTGACTTTCTATGTGCATGGCCAATTATTCACCTCTGTATTATTCAGCCCTGGAAACAGTTGTAAAAAAGCCACCTACCTACTTCACTAATTGCTAGTTGAAGTCATACTTACTGAAGGTTGTGTGAAAAGAGACTGCCTCAAGTCCCCAACTTTATCAGTTATCTAGTTTATAAATGGCTCTGTAAACGATATCTTCAGAAGCTATGAAGTCTATTGAAAACAGCTTCTACCTCCCATTGTGTAGGGGTAAAGTTTGT</genome_strand>
        <mrna_strand>GGAGTTTCCTTGAAGTATATAAGCATACTAAAATAGTATATGGCGCAAAAGTAACAGAGCTAAATTTTCATCCCATGACAATGGTATTAAATTCTCTTCGCGGTCATTTCTTCAAAAACCTTTCGTGCACTACCAGTAGTATAATCACCGGCCGTTTCTTCAACGGCCGCCGCGTTCACCGGCTAATTCCGTTCATTCATTTATCTAAATCCTGTGCTGCGCAAAGATACAAGCATTGGAAGCGCATCCAGACTGCAGCTAAATTTTCCACGTTATCTTCTCCTTCTTCGGAGACTCCGGCTAGTGATTCATTCACTTCTCCATACCTCTCTGTTCGCATATGCTGCCAAAAGGATGTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCTCTCAGAGGCTCTTTTATGTTTTGGAGCCAGTTCAACTACTGTGGATGAAGAAGAAAGAAGTGATGAG................................................................................................................................................................................................................................................................................................................................ATTATCATTACTTCCATCTTTTCTGTATGCAAAGATGTGAAAGACTGCATTTCACTTGCTGCTGATTCTATAGGGTTGCAAAAGATACCTAGTTTTGAGGTTACGATGCATGACCACACTGATTGGATAAAAGCTACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTTTTGTCCAGTGGAAGTTACTGATGGACTCTGGGTGGTGCCTGAATGGACAACTCCTCCA....................................................................................................................................................................................................................................................................................GATCCTCAAGCAACAAATATAATCCTAAATCCTGGTTTGGCATTTGGAACTGGGGAGCACCCAACAACTAAGTTGTGTCTCCTGCTATTGCGTGATTTGATAAAAGGAGGAGAATTCTTCTTGGACTATGGAACTGGTTCGGGTGTGCTAGCAATTGCAGCTCTTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGCAGCTTTTTCAGTTGGTTTTGATATAGATCCCCAGGCAATCACATCTGCTCAATATAATGCTACTTTAAACAACATTGGACATGAAGAATTGCTTTTAAAACTTGTTCCTGGCAAAGGAATTCTTCCCTCTGCAGATTTTAGTTCAAGTATGGACATTGATCAAACTGCCTATGATGCAGAAGTTCTAAATAACAGGGGAAAATATGACATCGTTGTGGCAAACATATTATTGAATCCTCTGCTTGAGTTGGCAGATGAGATTGTGTCCTATGCAAAGCCTGGTGCTACAGTTGCTCTTTCCGGGATCATATCTGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTCGCATACTAGAAAGGTATTCACAATACCTAGAGAACATTACAGTTACAAAGATGGATGACTGGGCTTGCATAAGTGGCTTAAAGAAATGACATAACAGCAGCTAAAGGACAACGAATGTTTTCTAATGTTGTGGAACTTAAGATTCTACAAAACTACGGGAGTCAGATGTAGATCGAGCCCTGGAAGTCCTCTCCTCAGCCCTCGCAGCTCCCTGCGTGAACTTTGCAAGTCATTTGACTTTCTATGTGCATGGCCAATTATTCACCTCTGTATTATTCAGCCCTGGAAACAGTTGTAAAAAAGCCACCTACCTACTTCACTGATTGCTAGTTGAAGTCATACTTACTGAAGGTTGTGTGAAAAGAGACTGCCTCAAGTCCCCAACTTTATCAGTTATCTAGTTTATAAATGGCTCTGTAAACGATATCTTCAGAAGCTATGAAGTCTATTGAAAACAGCTTCTACCTCCCATTGTGTAGGGGTAAAGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540085" ref_strand="+" ref_description="SGN-E540085 [TUS-60-C22](-)">
      <seq>tgatgcacagaaggtgttttcgagatcacgccatacaagtgatgaagaagatggtgcgagaacatatcctataccttcatctgccaccttatctgttctccttattccttcattaaaagaggctgctaccagtgaaacagatggttcactcatgcaggcgatggtcagttcctttatggatatggagcgtatgaaggctggttcttgcgatctgttcatgactaggttgcttcagcgactagcaagtgcaaaggatccgtctttgaaagatctgcaagacctggctggtcgcatcttttcaaagggaaagattgaaacagagagtacaactaccgagtctgatagcaaaaaaaagcagcagagtaaagagcttaattcaaatgccaatttgagtccactggcaaggttcttgctttcaagatggcaagggcatgcttctcgagatcaaaattcctaaacattgaggttagattattgtttcaaaattttgccttctcaaatcttgtttgttcatgaattattttgattatgtgtacatatcatttcgaggacatctgtaatttcgtcctctgattcaaattttttggggtttttcctaattgaagatttttcttttctgcttttgctttgcaaatgtaatttaaagctctattttctgttagaatttaccctttgattgggcgcttttattgctctatgtaatagtaacaagctttttatgtttttattgctaacctcggtgttgcaacttccggaagaatgttgtaaagtacacttgacatattgttatttaacttgttgatttttccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="98477" stop="95407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98177" g_stop="98057" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98056" i_stop="96836" i_length="1221">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96835" g_stop="96711" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="246" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96710" i_stop="96617" i_length="94">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96616" g_stop="96443" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="420" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96442" i_stop="96098" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96097" g_stop="95707" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="811" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="821"/>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E540085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98177" e_stop="98057"/>
          <exon e_start="96835" e_stop="96711"/>
          <exon e_start="96616" e_stop="96443"/>
          <exon e_start="96097" e_stop="95707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGTATCATTTGGGCTTTCAGTTACCTTAGATCTCTTATAGGTGATGTTTTATGGGAGTCATGCTAGATGAAGTTGAGGTCTGTTGAGCTATGCTTGTTTGGATTGTGATACATTTTTATCTGTATGGATACTAGAGTATGTGGTGCTGGTCCTTTTTCCATCACAAACCTTTGTTGTAGGCCTGATTTCCAGCACTTTCTGGGGTTTCAAACAGTGCATATTTGAAATGGAAAGGGTATTCTTTTGGGGTAAAAGGGTTTTTAATAGAATAATGCCATTGAGTTGTATTGGTATAAAAGAGCTGAAGAAAGATGAGAAAAAAAGGCTGGAAAATGGTGGCAAAAATCAGAAGTTCAGCTAACCATAAGAATCAATTCCTAGGTGGCTTAGGCATCATTACTAGGTTAGAATTGCACTAAACAATCCAAAGAGAGTGTAACGATAATAGGACATCTGTAATTGCTGATATGTTTATAATTGAGCGCATTACAATGGTACTGGTAGACTTCAACGAACTCATGTTTACAAGAAGTAATCTTAGATGGATTTGGAACCAAATACTTCCACTTGTATAAAATCAGACTATCTAGACTAAAATATTGATTAAAAAAACGCCTGGCTGGATTAGGATAAGAAAGGGATTATTGTATCTAGATTCATAAAAGGACTCAAAATCGGCTATTTGGCAGATTTTTTTGAACTGCAGTAATTTGAAAAATTTCTGCAAAGAACTATATTGCCAGAAAAATCTTGATTTTGTAAGCTGAAATTATGAAAAAACCTATTTATTGTTGATTGCATACTAAGATGAACAAGCCTTCGTATTATTACTTTTTATCTAAATTGTCATTGAAATAGTGGTATGGTCTGATGTGATCTGAGATATCTTGTGATCAAAAAATTGAGAGTGAACCTAATAGATTTGACCTGAATCATTTTATCTATCAATAAACACATAAGTGACTGTTGGCTTTTCGCCCAACGTGAAGGCAGCTGATCTTCTACCAGATGTGGAAGCAACCACTAATGCTTGCATTAGGGTAGTCTGTCTACATCACACCCCAAGGGTGTGACACTTCTCCGGACCCTGCGTGAACGTGGGATGCTTTGTGCGCCAGGCTGCTCTTCTTTTACTTCTATCAGGCTCAATAGTCAAAAGCCTAGCACTTAATTGCTCTTCTGATAATTTTCTCACCGTCTCTTCATTTATCTTGGCGTGTAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGGTTATTAGATATTCCACACTATATGCTAGCGTTGAAATATAACTTGAATGTATTTGTTAATAGCTTGTCTCAAGAAAGTTGAATTCCACTGCAGTGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAGGTTTGTTTAAAATGTCATCAAATATTAAGTTCTTGTAGTGCTGTGAATAAATACCTAGGCACCAAATATATTCCTCATTAAAACATGCCTATTTTTAGATTGCGAGAGCCGAGATGGGAGACTGGATATAAGAATTTACATCTATTTTTCCTCAGTTTCACGATTATTTTGAGCCTCTTTAGTCTAATGCGAGATTATTAATAAAGTGATGTCGCAGTATTAGTGGAAAATTATTATGCTTTATATATCTAGAAATATGAAATGCATATTACGACATGCATCTATCAAAGGTTAAAGCATTTGTTACGCATGTCTTCCTAAACAAGTTCGACCTTTCAATTGCAGATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACATTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAATCTTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATCTGTAATTTCGTCCTCTGATTCAAATTTTTTGGGGTTTTTCCTAATTGAAGATTTTTCTTTTCTGCTTTTGCTTTGCAAATGTAATTTAAAGCTCTATTTTCTGTTAGAATTTACCCTTTGATTGGGCGCTTTTATTGCTCTATGTAATAGTAACAAGCTTTTTATGTTTTTATTGCTAACCTCGGTGTTGCAACTTCCGGAAGAATGTTGTAAAGTACACTTGACATATTGTTATTTAACTTGTTGATTTTTCCTT</genome_strand>
        <mrna_strand>TGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAG..............................................................................................TGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAG.........................................................................................................................................................................................................................................................................................................................................................ATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACATTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAATCTTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATCTGTAATTTCGTCCTCTGATTCAAATTTTTTGGGGTTTTTCCTAATTGAAGATTTTTCTTTTCTGCTTTTGCTTTGCAAATGTAATTTAAAGCTCTATTTTCTGTTAGAATTTACCCTTTGATTGGGCGCTTTTATTGCTCTATGTAATAGTAACAAGCTTTTTATGTTTTTATTGCTAACCTCGGTGTTGCAACTTCCGGAAGAATGTTGTAAAGTACACTTGACATATTGTTATTTAACTTGTTGATTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540087" ref_strand="+" ref_description="SGN-E540087 [TUS-60-C22]">
      <seq>aatgttagagacagatcaaaattgggcaaggtgcaacgtgatgggctagaaaataaaacagaacaaccgacaatgagctctgattcttctaggcactcgcgtgattatcttgatgcacagaaggtgttttcgagatcacgccatacaagtgatgaagaagatggtgcgagaacatatcctataccttcatctgccaccttatctgttctccttattccttcattaaaagaggctgctaccagtgaaacagatggttcactcatgcaggcgatggtcagttcctttatggatatggagcgtatgaaggctggttcttgcgatctgttcatgactaggttgcttcagcgactagcaagtgcaaaggatccgtctttgaaagatctgcaagacctggctggtcgcatcttttcaaagggaaagattgaaacagagagtacaactaccgagtctgatagcaaaaaaaagcagcagagtaaagagcttaattcaaatgccaatttgagtccactggcaaggttcttgctttcaagatggcaagggcatgcttctcgagatcaaaattcctaaacattgaggttagattattgtttcaaaattttgccttctcaaaatctgtttgttcatgaattattttgattatgtgtacatatcatttcgaggacatctgtaatttcgtcctctgattcaattttttgggggtttttctaattgnagatttttcttttctgcttttgcttgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="98676" stop="95583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98376" g_stop="98285" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98284" i_stop="98196" i_length="89">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98195" g_stop="98057" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="231" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98056" i_stop="96836" i_length="1221">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96835" g_stop="96711" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="356" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96710" i_stop="96617" i_length="94">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96616" g_stop="96443" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="530" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96442" i_stop="96098" i_length="345">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.533" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96097" g_stop="95883" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="743" r_length="213" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E540087" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98376" e_stop="98285"/>
          <exon e_start="98195" e_stop="98057"/>
          <exon e_start="96835" e_stop="96711"/>
          <exon e_start="96616" e_stop="96443"/>
          <exon e_start="96097" e_stop="95883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAGGTACACAAGTTTTTGAAGCTGAAAGATGGTCTGAAGTTGGTTTATTCTAGTTTCACCATTTCTTCTCTGAAGCACCATAATTTTTCCAGGCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGTATCATTTGGGCTTTCAGTTACCTTAGATCTCTTATAGGTGATGTTTTATGGGAGTCATGCTAGATGAAGTTGAGGTCTGTTGAGCTATGCTTGTTTGGATTGTGATACATTTTTATCTGTATGGATACTAGAGTATGTGGTGCTGGTCCTTTTTCCATCACAAACCTTTGTTGTAGGCCTGATTTCCAGCACTTTCTGGGGTTTCAAACAGTGCATATTTGAAATGGAAAGGGTATTCTTTTGGGGTAAAAGGGTTTTTAATAGAATAATGCCATTGAGTTGTATTGGTATAAAAGAGCTGAAGAAAGATGAGAAAAAAAGGCTGGAAAATGGTGGCAAAAATCAGAAGTTCAGCTAACCATAAGAATCAATTCCTAGGTGGCTTAGGCATCATTACTAGGTTAGAATTGCACTAAACAATCCAAAGAGAGTGTAACGATAATAGGACATCTGTAATTGCTGATATGTTTATAATTGAGCGCATTACAATGGTACTGGTAGACTTCAACGAACTCATGTTTACAAGAAGTAATCTTAGATGGATTTGGAACCAAATACTTCCACTTGTATAAAATCAGACTATCTAGACTAAAATATTGATTAAAAAAACGCCTGGCTGGATTAGGATAAGAAAGGGATTATTGTATCTAGATTCATAAAAGGACTCAAAATCGGCTATTTGGCAGATTTTTTTGAACTGCAGTAATTTGAAAAATTTCTGCAAAGAACTATATTGCCAGAAAAATCTTGATTTTGTAAGCTGAAATTATGAAAAAACCTATTTATTGTTGATTGCATACTAAGATGAACAAGCCTTCGTATTATTACTTTTTATCTAAATTGTCATTGAAATAGTGGTATGGTCTGATGTGATCTGAGATATCTTGTGATCAAAAAATTGAGAGTGAACCTAATAGATTTGACCTGAATCATTTTATCTATCAATAAACACATAAGTGACTGTTGGCTTTTCGCCCAACGTGAAGGCAGCTGATCTTCTACCAGATGTGGAAGCAACCACTAATGCTTGCATTAGGGTAGTCTGTCTACATCACACCCCAAGGGTGTGACACTTCTCCGGACCCTGCGTGAACGTGGGATGCTTTGTGCGCCAGGCTGCTCTTCTTTTACTTCTATCAGGCTCAATAGTCAAAAGCCTAGCACTTAATTGCTCTTCTGATAATTTTCTCACCGTCTCTTCATTTATCTTGGCGTGTAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGGTTATTAGATATTCCACACTATATGCTAGCGTTGAAATATAACTTGAATGTATTTGTTAATAGCTTGTCTCAAGAAAGTTGAATTCCACTGCAGTGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAGGTTTGTTTAAAATGTCATCAAATATTAAGTTCTTGTAGTGCTGTGAATAAATACCTAGGCACCAAATATATTCCTCATTAAAACATGCCTATTTTTAGATTGCGAGAGCCGAGATGGGAGACTGGATATAAGAATTTACATCTATTTTTCCTCAGTTTCACGATTATTTTGAGCCTCTTTAGTCTAATGCGAGATTATTAATAAAGTGATGTCGCAGTATTAGTGGAAAATTATTATGCTTTATATATCTAGAAATATGAAATGCATATTACGACATGCATCTATCAAAGGTTAAAGCATTTGTTACGCATGTCTTCCTAAACAAGTTCGACCTTTCAATTGCAGATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACATTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAATCTTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATCTGTAATTTCGTCCTCTGATTCAAATTTTTTGGGGTTTTTCCTAATTGAAGATTTTTCTTTTCTGCTTTTGCTTTGCAAAT</genome_strand>
        <mrna_strand>AATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAG.........................................................................................GCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAG..............................................................................................TGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAG.........................................................................................................................................................................................................................................................................................................................................................ATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACATTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAAATCTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATCTGTAATTTCGTCCTCTGATTC-AATTTTTTGGGGGTTTTTCTAATTGNAGATTTTTCTTTTCTGCTTTTGC-TTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285551" ref_strand="+" ref_description="SGN-E285551 [cLES-10-H6]">
      <seq>tgttagagacagatcaaagttgggcaaggtgcacgtgatgggctagaaaataaaacagaacaaccgacaatgagctctgattcttctaggcactcgcgtgattatcttgatgcacagaaggtgttttcgagatcacgccatacaagtgatgaagaagatggtgcgagaacatatcctataccttcatctgccaccttatctgttctccttattccttcattaaaagaggctgctaccagtgaaacagatggttcactcatgcaggcgatggtcagttcctttatggatatggagcgtatgaaggctggttcttgcgatctgttcatgactaggttgcttcagcgactagcaagtgcaaaggatccgtctttgaaagatctgcaagacctggctggtcgcatcttttcaaagggaaagattgaaacagagagtacaactaccgagtctgatagcaaaaaaaagcagcagagtaaagagcttaattcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="98674" stop="96180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98374" g_stop="98285" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98284" i_stop="98196" i_length="89">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98195" g_stop="98057" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="228" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98056" i_stop="96836" i_length="1221">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96835" g_stop="96711" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="353" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96710" i_stop="96617" i_length="94">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96616" g_stop="96480" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="490" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E285551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98374" e_stop="98285"/>
          <exon e_start="98195" e_stop="98057"/>
          <exon e_start="96835" e_stop="96711"/>
          <exon e_start="96616" e_stop="96480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAGGTACACAAGTTTTTGAAGCTGAAAGATGGTCTGAAGTTGGTTTATTCTAGTTTCACCATTTCTTCTCTGAAGCACCATAATTTTTCCAGGCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGTATCATTTGGGCTTTCAGTTACCTTAGATCTCTTATAGGTGATGTTTTATGGGAGTCATGCTAGATGAAGTTGAGGTCTGTTGAGCTATGCTTGTTTGGATTGTGATACATTTTTATCTGTATGGATACTAGAGTATGTGGTGCTGGTCCTTTTTCCATCACAAACCTTTGTTGTAGGCCTGATTTCCAGCACTTTCTGGGGTTTCAAACAGTGCATATTTGAAATGGAAAGGGTATTCTTTTGGGGTAAAAGGGTTTTTAATAGAATAATGCCATTGAGTTGTATTGGTATAAAAGAGCTGAAGAAAGATGAGAAAAAAAGGCTGGAAAATGGTGGCAAAAATCAGAAGTTCAGCTAACCATAAGAATCAATTCCTAGGTGGCTTAGGCATCATTACTAGGTTAGAATTGCACTAAACAATCCAAAGAGAGTGTAACGATAATAGGACATCTGTAATTGCTGATATGTTTATAATTGAGCGCATTACAATGGTACTGGTAGACTTCAACGAACTCATGTTTACAAGAAGTAATCTTAGATGGATTTGGAACCAAATACTTCCACTTGTATAAAATCAGACTATCTAGACTAAAATATTGATTAAAAAAACGCCTGGCTGGATTAGGATAAGAAAGGGATTATTGTATCTAGATTCATAAAAGGACTCAAAATCGGCTATTTGGCAGATTTTTTTGAACTGCAGTAATTTGAAAAATTTCTGCAAAGAACTATATTGCCAGAAAAATCTTGATTTTGTAAGCTGAAATTATGAAAAAACCTATTTATTGTTGATTGCATACTAAGATGAACAAGCCTTCGTATTATTACTTTTTATCTAAATTGTCATTGAAATAGTGGTATGGTCTGATGTGATCTGAGATATCTTGTGATCAAAAAATTGAGAGTGAACCTAATAGATTTGACCTGAATCATTTTATCTATCAATAAACACATAAGTGACTGTTGGCTTTTCGCCCAACGTGAAGGCAGCTGATCTTCTACCAGATGTGGAAGCAACCACTAATGCTTGCATTAGGGTAGTCTGTCTACATCACACCCCAAGGGTGTGACACTTCTCCGGACCCTGCGTGAACGTGGGATGCTTTGTGCGCCAGGCTGCTCTTCTTTTACTTCTATCAGGCTCAATAGTCAAAAGCCTAGCACTTAATTGCTCTTCTGATAATTTTCTCACCGTCTCTTCATTTATCTTGGCGTGTAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGGTTATTAGATATTCCACACTATATGCTAGCGTTGAAATATAACTTGAATGTATTTGTTAATAGCTTGTCTCAAGAAAGTTGAATTCCACTGCAGTGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATG</genome_strand>
        <mrna_strand>TGTTAGAGACAGATCAAAGTTGGGCAAGGTGC-ACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAG.........................................................................................GCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAG..............................................................................................TGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707123" ref_strand="+" ref_description="SGN-E707123 [FA32AE07]">
      <seq>cagtattggaggatcatctagtactggaactgtccgaagtgtgaaaccaccgcaggttagagataggaaaccagaagttccattgaatcaacctgcttcaagaaaaaatcttgacagtgctagcaattggtcctctgcttctggaactgtccattatacttcatcagagggtttcaaccaaaaagacggcggagatgcaaacaccgagaaaggagattattctcatgaagatgaggagttgtcagtgagtggtactggaactgtggttgtgagatctccaagaggatctcctagaggaattcaatccacttctctattcagtgatcagagttccctgtccagtagcacacttgcttcttttgaggatgcttcttccagtggcactgtagtttatcgtggacgtcatgatgacccggattctcctcgaacgccaaaatctaggttaggaattcaagagagatcttcaagtgcatcacttgaagacagctcagcaaatcttgcagaggccaaggcagccatgctagcaggactgaagaaggaaaatgttagagacagatcaaaattgggcaaggtgcaacgtgatgggctagaaaataaaacagaacaaccgacaatgagctctgattcttctaggcactcgcgtgattatcttgatgcacagaaggtgttttcgagatcacgccatacaagtgatgaagaagatggtgcgagaacatatcctataccttcatctgccaccttatctgttctccttattccttcattaaaagaggctgctaccagtgaaacagatggttcactcatgcaggcgatggtcagttcctttatggatatggagcgtatgaaggctggttcttgcgatctgttcatgactaggttgcttcagcgactagcaagtgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="100451" stop="96411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100151" g_stop="99920" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99919" i_stop="99277" i_length="643">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99276" g_stop="99172" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="337" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99171" i_stop="99074" i_length="98">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99073" g_stop="98906" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="505" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98905" i_stop="98413" i_length="493">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98412" g_stop="98285" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="633" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98284" i_stop="98196" i_length="89">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98195" g_stop="98057" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="772" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98056" i_stop="96836" i_length="1221">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96835" g_stop="96711" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="897" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="96710" i_stop="96617" i_length="94">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="96616" g_stop="96611" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="903" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E707123" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100151" e_stop="99920"/>
          <exon e_start="99276" e_stop="99172"/>
          <exon e_start="99073" e_stop="98906"/>
          <exon e_start="98412" e_stop="98285"/>
          <exon e_start="98195" e_stop="98057"/>
          <exon e_start="96835" e_stop="96711"/>
          <exon e_start="96616" e_stop="96611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATTGGAGGATCATCTAGTACTGGAACTGTCCGAAGTGTGAAACCACCGCAGGTTAGAGATAGGAAACCAGAAGTTCCATTGAATCAACCTGCTTCAAGAAAAAATCTTGACAGTGCTAGCAATTGGTCCTCTGCTTCTGGAACTGTCCATTATACTTCATCAGAGGGTTTCAACCAAAAAGACGGCGGAGATGCAAACACCGAGAAAGGAGATTATTCTCATGAAGATGTATTGCTTTGTTCTCTATAAGTGTATTTTTCTATATGAATGTGCATATTTACATCTGTGTCTACCTACTTCATATCCTATTTCATATCCTTTTCTGAAGTTTATAAGCTTGTACAAAGGAGAAAATTTGATTATTGATCCAAGTTGCAGGAGAACATACAGTAATTGATTCTGCAACGTGGCAGCATGTTAGGTTTTTACTGTCAGGATGACCTTATTTAGGTGGTTTTACAGTGCTCTTCATGCACTAAAATATTATGACACACTTGAAATAAAAGGTGGATGAATCCTGTCATCTTCAATACTGCACTATTATCCAATGACATAGCTACATCAAATGCATCAAGCTCGTGCAAATTTTTCCTGAGGCTAAGAGAAATCTCTACTTAACATTACAGATCTCCCAAAAAAACGATATAAAATTAAAAAGGAAAGTAAAGAGCTCTATTGTTGGCATTATAGCATGTTTGAGCTTTATTGTTGGCATTCTAGCATGTTTGAGCTTTATTGGTGGCAGTCTAGCATGTTTGATCTTGATATTTTAAGAATCAGAAGTATTGACAAAAACTGTTCAACATTGCTCTTAGCGTATTTTTTTCTGCTAGTTTCTTCTTGCAACACTGTTCTAATCTTCAATTTGCAGGAGGAGTTGTCAGTGAGTGGTACTGGAACTGTGGTTGTGAGATCTCCAAGAGGATCTCCTAGAGGAATTCAATCCACTTCTCTATTCAGTGATCAGAGTTCCCTGGTATTGTCAGCTTTTCTACCAAAATTTCTTTACACTCATCTGCCGAAAATCTTTTTGGCATATTTGCCATTGACTACTGGTGTCAATTCACTTTGCAGTCCAGTAGCACACTTGCTTCTTTTGAGGATGCTTCTTCCAGTGGCACTGTAGTTTATCGTGGACGTCATGATGACCCGGATTCTCCTCGAACGCCAAAATCTAGGTTAGGAATTCAAGAGAGATCTTCAAGTGCATCACTTGAAGACAGCTCAGCAAATCTTGCAGAGGTATCTCACTTCAGAAAATTCTTAATTCAAGCTGGTTTCCATTTATGGAAAATTTGTCTTAATTAGAATATGCTAAAATCCAACAACAACATACCAAGTGTAATCCCACTAGTGTGGTCAGGGGAGGGTAGTGTGTACACGGGCCTTACCCTAGCTTGGTAAGTAGAGAGTTGTTTCAGATAGACCCTCGGCTCTAAAGTATGTTGAAATCTGCTGGTTGATTTTTGTACCACTAGACTTTGAACTAGGTATAGGAATGGCCACAAGGATAATAAAGACGGAAAATGTGTTGAACTTTTATCAAGAAAGGTCATATATAAAACCTCATTCTAGCAATGGTTTATTCATTAGGTTGGGATTTCTTCTTACATTTAACAAACTTGCATATTTTTTCCACTCATTATTTCTGATTTATTAATCTAATTATGTTAAAGTAATATGACATCTTTCCGTGGTTTGTTGCACAAGGCTTATTAGATGTGAACTTTTTTAGGCCAAGGCAGCCATGCTAGCAGGACTGAAGAAGGAAAATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAGGTACACAAGTTTTTGAAGCTGAAAGATGGTCTGAAGTTGGTTTATTCTAGTTTCACCATTTCTTCTCTGAAGCACCATAATTTTTCCAGGCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAGGTATCATTTGGGCTTTCAGTTACCTTAGATCTCTTATAGGTGATGTTTTATGGGAGTCATGCTAGATGAAGTTGAGGTCTGTTGAGCTATGCTTGTTTGGATTGTGATACATTTTTATCTGTATGGATACTAGAGTATGTGGTGCTGGTCCTTTTTCCATCACAAACCTTTGTTGTAGGCCTGATTTCCAGCACTTTCTGGGGTTTCAAACAGTGCATATTTGAAATGGAAAGGGTATTCTTTTGGGGTAAAAGGGTTTTTAATAGAATAATGCCATTGAGTTGTATTGGTATAAAAGAGCTGAAGAAAGATGAGAAAAAAAGGCTGGAAAATGGTGGCAAAAATCAGAAGTTCAGCTAACCATAAGAATCAATTCCTAGGTGGCTTAGGCATCATTACTAGGTTAGAATTGCACTAAACAATCCAAAGAGAGTGTAACGATAATAGGACATCTGTAATTGCTGATATGTTTATAATTGAGCGCATTACAATGGTACTGGTAGACTTCAACGAACTCATGTTTACAAGAAGTAATCTTAGATGGATTTGGAACCAAATACTTCCACTTGTATAAAATCAGACTATCTAGACTAAAATATTGATTAAAAAAACGCCTGGCTGGATTAGGATAAGAAAGGGATTATTGTATCTAGATTCATAAAAGGACTCAAAATCGGCTATTTGGCAGATTTTTTTGAACTGCAGTAATTTGAAAAATTTCTGCAAAGAACTATATTGCCAGAAAAATCTTGATTTTGTAAGCTGAAATTATGAAAAAACCTATTTATTGTTGATTGCATACTAAGATGAACAAGCCTTCGTATTATTACTTTTTATCTAAATTGTCATTGAAATAGTGGTATGGTCTGATGTGATCTGAGATATCTTGTGATCAAAAAATTGAGAGTGAACCTAATAGATTTGACCTGAATCATTTTATCTATCAATAAACACATAAGTGACTGTTGGCTTTTCGCCCAACGTGAAGGCAGCTGATCTTCTACCAGATGTGGAAGCAACCACTAATGCTTGCATTAGGGTAGTCTGTCTACATCACACCCCAAGGGTGTGACACTTCTCCGGACCCTGCGTGAACGTGGGATGCTTTGTGCGCCAGGCTGCTCTTCTTTTACTTCTATCAGGCTCAATAGTCAAAAGCCTAGCACTTAATTGCTCTTCTGATAATTTTCTCACCGTCTCTTCATTTATCTTGGCGTGTAGGCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAGGTTATTAGATATTCCACACTATATGCTAGCGTTGAAATATAACTTGAATGTATTTGTTAATAGCTTGTCTCAAGAAAGTTGAATTCCACTGCAGTGCAAA</genome_strand>
        <mrna_strand>CAGTATTGGAGGATCATCTAGTACTGGAACTGTCCGAAGTGTGAAACCACCGCAGGTTAGAGATAGGAAACCAGAAGTTCCATTGAATCAACCTGCTTCAAGAAAAAATCTTGACAGTGCTAGCAATTGGTCCTCTGCTTCTGGAACTGTCCATTATACTTCATCAGAGGGTTTCAACCAAAAAGACGGCGGAGATGCAAACACCGAGAAAGGAGATTATTCTCATGAAGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTTGTCAGTGAGTGGTACTGGAACTGTGGTTGTGAGATCTCCAAGAGGATCTCCTAGAGGAATTCAATCCACTTCTCTATTCAGTGATCAGAGTTCCCTG..................................................................................................TCCAGTAGCACACTTGCTTCTTTTGAGGATGCTTCTTCCAGTGGCACTGTAGTTTATCGTGGACGTCATGATGACCCGGATTCTCCTCGAACGCCAAAATCTAGGTTAGGAATTCAAGAGAGATCTTCAAGTGCATCACTTGAAGACAGCTCAGCAAATCTTGCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCAGCCATGCTAGCAGGACTGAAGAAGGAAAATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAG.........................................................................................GCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAG..............................................................................................TGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271821" ref_strand="+" ref_description="SGN-E271821 [cLEM-8-I16]">
      <seq>ttgatgtgtgtttaattgtttgtagtgtgaattttaaattttgtgttattattggttaatttaagtagttaatgttttttcagattgattttccgtgccagagagtgagattgagtggctacattttatgaatttgttgaacatttactaagaggagttgttgaatgagaagtgcaagctaggggatgctggcttcacttcatctactgagagtgtgaagggatacaggtagttgtgtataaaaatggctgatgcagctgctcttattgaagcttcaagatctagatttagtgatctggagctcattggaagaggctcatttggtgacgtctataaaggatttgacaaggaattaaacaaagaagttgcgatcaaggttattgatctggaagaatcagaggatgaagttgaggatatccaaaaggaaattgcagttttatcacaatgtcgatctccttatattacggagtactatgggtcatatctgcaccaaactaagctatggataataatggaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="-" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="110937" stop="105990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110637" g_stop="110299" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110298" i_stop="107613" i_length="2686">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107612" g_stop="107556" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="396" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107555" i_stop="106507" i_length="1049">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106506" g_stop="106479" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="424" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106478" i_stop="106387" i_length="92">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.549" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106386" g_stop="106290" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="521" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="-" ref_id="SGN-E271821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110637" e_stop="110299"/>
          <exon e_start="107612" e_stop="107556"/>
          <exon e_start="106506" e_stop="106479"/>
          <exon e_start="106386" e_stop="106290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTGTGTTTAATTGTTTGTAGTGTGAATTTTAAATTTTGTGTTATTATTGGTTAATTTAAGTAGTTAATGTTTTTTCAGATTGATTTTCCGTGCCAGAGAGTGAGATTGAGTGGCTACATTTTATGAATTTGTTGAACATTTACTAAGAGGAGTTGTTGAATGAGAAGTGCAAGCTAGGGGATGCTGGCTTCACTTCATCTACTGAGAGTGTGAAGGGATACAGGTAGTTGTGTATAAAAATGGCTGATGCAGCTGCTCTTATTGAAGCTTCAGGATCTAGATTTAGTGATCTGGAGCTCATTGGAAGAGGCTCATTTGGTGACGTCTATAAAGGGTAAGGATTAAAATGTTTATTTTGTTAATGTGCTTCCATCTTGCTTTTGTTGTTATGCATTGTGAATCAATCAGTTACACTTCTATTTCAATTAGTTTGGGTAAATAATATGAATCTTCCATGTCCATGCCACTCAATTCTGTCCTGTTTCGTGCTTACTAAAAGCTTTCCTTTTTAATAGATACTTAGTTATACCTTTTAATAGAAACGGATCACGAATTTTAAATTTATCTGCAAGTGGAATTCCACGTGGAAACTTTGAATTTAAGCGAGCTGATGTCCATATACAGAGCATTAACCACTCATTGTCTCAAAGAACAAACTTATGGGATGTTATACACGTGTTTTCTTAAAGAAAAAATGGTTTAAGACTTAATTGTCGTAAATGCTAGTAGTAACAATTGAGTTATGGAGGTGCTGGACTAAAGCCTTCCAGCCCACTTGAGTGATGCCATGTATTTGAAAAATATGCTTATTGATAGTCCACCAGTCTTTTTATCACTTATTTGTGCCAGAGCAACTTCTATCCATATTGGCCCATAAACTATCCTGCTGGGTATTGTTCGTAAACTTTGGTAACCAAGTCATAGCATGTTGGGTTCAAAGTAATCTAGCAAAACTGTTTTGGCTGAAATGAGATAGAATAATATGGATGTAAGTTGTATACTTGACTGTATCACAATAAGTTTAAATTAATACATAGTAGCATTTCGCTTACTTTGTTTTTTTTTAATATACCAACTTATAATAGTCACGCGCTGGTTGCAACTGGATTACCTGGTATAAAAATTTTCTTTTACAATACCAATATAAACAACTTAAGTTTAAAAAGTATAAGGCAATACTTTGTTTCTTCACTTGTTATTTGAATTCTAAACTAAAAGTACATAAAAAGTTGATTCTCAAGCAAAAAAAGAACAAATAGAAGGAAAGTATCTCAATAGAGCAATTCGTAATGCTCTCTTCCTTTACGCCAGGATAACAGGAATACTAAAGAGTGTGACATCTCTCAGTTCCTTTAGCACAAGCCATTACATAATTAATCTTCTTTGGTATACCGGTGTGGTACACGTGTCAAGATATGATCTTTGCTTTTGGGACTCAGTGTCCCCTAGTGAGGCAGGGAAAAACTTCAAAAAGTGTCTTTTATGTTAATTTGGATAGCCGGAGGTTCGAATCCCTCTCCATCCTGTAGGTCATAAGTTCTCTCTTGCGTTATCTAGAACATTTCAACCCAATTGACAATTGTTACGCAAGACATATTTGGTATTCAATAGTGACCAAGCAAATACTTGACAGATTTTATTATAATACATATTTCTACTTGGTCCGATTTGACCCGTCCATTATTGACCATACTTGCACATTTGAGGTGAATTGAAGAAAGGGCGATATATTTAAAGGTTTGGGCTTAAAACAAATGATCAAGTCATGCTACAAAATATACTCTAGGCTACATTAAATGATAACAACTAAACCTTAATTATAACTAGTTGATATTGCGTGTATGAATCCTTCATTTTCATTACGCTTAGTTCTTTGATAAATCTGCATTAATTCTAAGAGATTGTAAGGTTTTTGAAACAACTTCCTTGTTATTTCAGGCATACTTTATCCATTTTCAGCTCCTTTAATTGGTTGAAGTTGTTGCACCTATGTAACAACATTTAGATTTGCCTTAGAACATAGACAAATCATCACTTATGACAATTTTCTCAGCACATTTTCTCTGTGCTACTTGCATCCTTTGTCTAAATTTGTATCAAAGTGGATTTGAGAAGGAAAATATTCCTGAATGGTTAATTTTAAGACTGTTTACTGGTGTGTACAAGTAGTATTATGTGTCAAATATCTTTTTGATAAAGGGAAGTCTGTCAAGTATCTTGATGTTCAAAAGTAGATGATGTGCCATACATTTGGAAGGGATGTAAGCATGTGTGTCTAACCACTATAGATAATCTTTCTCATATTCAAATGGTTAAGTCATTATGAACAACTACTATGATGTATAGGATTTTGCAGAAAGAAAAATATTTTTTTTGACACAACAACATACCCAGTGTAACACGTACCTTACCCCTACCTTGTGAAGGTAGAGAGGCTTTATAAATTAGTAGATTAAGGACTTCGATATATGATGATTGTAATATGGAGGAATTGCGATTAGAAGTTTATAGGGGAAAATGACATACGAATCTAGTCTGGATTTCTTATTTCGTCTTTTGTAATAGCTGGATTTTGTCTTCTTGGTGAGACCAGAATTCTAGATAATCTCTTGAAGTAAGCTAATTTCTCTGTAACCAAAAGAGAGGCATGTAACCTATTGCCAGTAGAAATAGGTTAAATGCCTTTTGCGGTAAGAGTCTTTCTAACAGCTTGTGGGACTTGAATGCCATTCTTTTTGATACGAACTTGAAGGCCATCCTTTATTAGGTGGATAAGCAAAATCTATTCTGTTCTGCATGGTCCCTTATCTCAATCGTAACTTCTTCTTTAGCTATGCAAACGGGGAAAAGTGTAATAGACTGTCCTTTGGTAAGAAATATACAATAGTATGATAACTCATGTCTAGACTAAGTGAAAGCTATCCTGGCAATGAAATTTTTAAGTTTATCTTTGTTATTCCCACCAGCTTGACATTAAATTTGTTTTGAGATATCATCATGTTAATTTTCTTGATTTGCAGATTTGACAAGGAATTAAACAAAGAAGTTGCGATCAAGGTTATTGATCTGGAAGAATCGTGAGTATATGGCCTTGAGTACTTTTTTGGAGTTTGAAGTTACGTTCACTATGGTGTTTTTCAGCAGGAGCTAGTGTTCATTTACTCTCCTTCTCCTTGGAGAGAGAGTGCAACTATAGCTAATATGGAAGCTGCAATATTGTATTTTACCCTTGTTCTTCATATTTTGTATATCATCTGGGCAGTAGATCTTTTTCATGCACTTTTAGTTTATGTTTCTATTGTGTGAATAATCAGTCAAGGATAAAATGAGACTAGATTCCCTTGGCAGAACTTCCAAATAGGTTGATAAATTATGAGCTCTATCATCTTTTGTCAATTTTGCCAAGTAGGTTGGAAGATCGATTATTCTAGTACAATTGATACAGGAGAATATATATATTTATCCAATGGTAGCAGAATCAGTGCAAACGATATCTAGTGATTTATGCTCCTTGCTGTTTTAATATGAATATCTTCAGGCCTCTACATATTTTTCTCTAGCTAGTTTAAAAGAATGATGAGTCGAAAGCTTCCTTTTCATATTTGTTATGGAAGTTGTTCCAAGAGTCTTTACGTTGATCTACTTGATTAGAGCTTCAATTGTAGTGGTCTTTGTGGCGGATAGACTGACCAGCCTAACATTCAGTCCCTATGTGTTCTTAATTCAGTTCATATAATTTTTTGATCAGGTAAATCTGAAGCTACTTAGTTTGCTTCATATCTGAACTGTGCCTTTGTAAAAGTTAAAAAGATTGTACTGGAAGTCCATGAATTCCCTCTATTTTTTTGGGGTAGTTGAAGTACACTTAATTTACAAGGTTTTCTGATACATCACCGCTTAGACATCGACAGAAATACTTTTCCAATTTTTATGACCTTTAATAAAAAACTTGTGTATAAATGGTTCTAGTTGCATGAAGCAGTCTAAGCTGGGGTGGGAAGATGAAATTAAAGTTTCATACAATTAAATCGCTTCATTGTATATTTCATGTTAAGTTCTGTCCTTGATATAAACTTCGTGACAGTTCTAGTTTAACCTGAAATGCCTTTTTATCATTGTCATTCAGAGAGGATGAAGTTGAGGATATCCAAAAGGTATGTTCACATTTTTATGGACTTATGTTACTCATTGGTGATTATATTAGAACATTAAGTGAGCAGGGTTTTATTGGATGACTTCTTTTCAGGAAATTGCAGTTTTATCACAATGTCGATCTCCTTATATTACGGAGTACTATGGGTCATATCTGCACCAAACTAAGCTATGGATAATAATGGAATACA</genome_strand>
        <mrna_strand>TTGATGTGTGTTTAATTGTTTGTAGTGTGAATTTTAAATTTTGTGTTATTATTGGTTAATTTAAGTAGTTAATGTTTTTTCAGATTGATTTTCCGTGCCAGAGAGTGAGATTGAGTGGCTACATTTTATGAATTTGTTGAACATTTACTAAGAGGAGTTGTTGAATGAGAAGTGCAAGCTAGGGGATGCTGGCTTCACTTCATCTACTGAGAGTGTGAAGGGATACAGGTAGTTGTGTATAAAAATGGCTGATGCAGCTGCTCTTATTGAAGCTTCAAGATCTAGATTTAGTGATCTGGAGCTCATTGGAAGAGGCTCATTTGGTGACGTCTATAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGACAAGGAATTAAACAAAGAAGTTGCGATCAAGGTTATTGATCTGGAAGAATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGATGAAGTTGAGGATATCCAAAAG............................................................................................GAAATTGCAGTTTTATCACAATGTCGATCTCCTTATATTACGGAGTACTATGGGTCATATCTGCACCAAACTAAGCTATGGATAATAATGGAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745496" ref_strand="+" ref_description="SGN-E745496 [GI|47105292]">
      <seq>ggaagaagaaaaaagggtctctatctttgtggttgataagcatttgtattgtatagttttagctcaacaagataaaaaaaaaaaaaaaaaacaataaaaattgaatctttaagagaaatttttctagaggagtttgaagtttgagtgttgagaagagaaaaggggtttagtttttattattaaagagagaagtgggaaaaaaaaggggaaaaaatggtgggctcaggaacagcagatagaagcaaagaagcagttgggatgatggcccttcatgaggcactaagaagcgtctgtcttaacacagactggacttattcagtgttctggaccattcgtcctcgaccgagagttagaggtggtaatggttgtaaagttggagatgacaatggtagcttgatgttgatgtgggaagatggattctgcagaggtagaggaacagattgcttggaagagatggatggtgaagatcttgtgagaaaagccttcagcaaaatgtccattcagttatataattatggagaagggttgatgggtaaagttgcatctgataagtgtcataaatgggttttcaaggaacctacagaatgtgaaccaaacatatctaattactggcagagttcatttgatgctctcccacctgagtggactgaccagtttgagtcagggattcagactattgctgtgattcaagctggacatggcctactgcaactgggatcctgcaagattataccggaagacctccatttcgtgttaagaatgaggcacacgttcgagtcactaggctatcaatctggcttttatttgtcacaactattttcttcaacaaggactagttcaccttcgtctgcaattcctcttaagcagccgaccatgccaattcgcgctcctcctccacttttcaactggggaccaaggccaatgccttcagcgtcttcgctactatcgtctcccaacttccagaactccgcgagacttggtattccacagtcgaaagatgaatcacatatgttccttcaacttcctcattcatccgaaccacgaatggaagacatgatgggagctgctgctgatcatgagagtgatatcaagtggcctaatggattaactttctttagtgctctcactggtagaaatgatgattccaggatcctgttcaatcctgatagcttaggttccaaaccggatcataatcagcatccgcttagtcttgatgggaagacatcaaatccgaactcagatgcttctagcttgcacaacaacggaggtgctaatccaaacgatttcttgagcctggatagccaccctgatagcattcggaagatggacaagttcaagagaagctatacgcttcctgctaggatggcttcgtcttctaattcatcgacttcacttgatcagcacgctaataatcccggagaatataggaatgaaggaggaatgtaccctgatgtgatggagagattcttggaatgatctttctagggttatggttgggagaagttgtacttaagaaaaagcttttagttgtgttttctgcttaatttagtgttcttttaatagtttgattttccttcatcctttggaccattgaatgtttccacttttttcttgtagtctttttgatcagtttatctagaaatgaaggaaaatttatgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="122074" stop="126895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122373" g_stop="122716" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122717" i_stop="122795" i_length="79">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122796" g_stop="122846" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="395" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122847" i_stop="123547" i_length="701">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123548" g_stop="123676" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="524" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123677" i_stop="123859" i_length="183">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123860" g_stop="123965" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="630" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123966" i_stop="124079" i_length="114">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124080" g_stop="124121" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="672" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124122" i_stop="124413" i_length="292">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124414" g_stop="124470" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="729" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124471" i_stop="124687" i_length="217">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124688" g_stop="125616" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="1658" r_length="929" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="125617" i_stop="126577" i_length="961">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="126578" g_stop="126598" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1659" r_stop="1679" r_length="21" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E745496" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122373" e_stop="122716"/>
          <exon e_start="122796" e_stop="122846"/>
          <exon e_start="123548" e_stop="123676"/>
          <exon e_start="123860" e_stop="123965"/>
          <exon e_start="124080" e_stop="124121"/>
          <exon e_start="124414" e_stop="124470"/>
          <exon e_start="124688" e_stop="125616"/>
          <exon e_start="126578" e_stop="126598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGAAAAAAGGGTCTCTATCTTTGTGGTTGATAAGCATTTGTATTGTATAGTTTTAGCTCAACAAGATAAAAAAAAAAAAAAAAAACAATAAAAATTGAATCTTTAAGAGAAATTTTTCTAGAGGAGTTTGAAGTTTGAGTGTTGAGAAGAGAAAAGGGGTTTAGTTTTTATTATTAAAGAGAGAAGTGGGAAAAAAAAGGGGAAAAAATGGTGGGCTCAGGAACAGCAGATAGAAGCAAAGAAGCAGTTGGGATGATGGCCCTTCATGAGGCACTAAGAAGCGTCTGTCTTAACACAGACTGGACTTATTCAGTGTTCTGGACCATTCGTCCTCGACCGTATGTGTCTTTCCCATGCTTTTTTTCTTCTCTGTTTTTCTTGTCTTTTGGGGGTCCTCATTTTTTGTCTTATTTGCAGGAGAGTTAGAGGTGGTAATGGTTGTAAAGTTGGAGATGACAATGGTAGCTTGTGAGTATTTTGATTTCTTACCCATTTTTTGGAACAAGAAAATGGACTTAAAAATCTATTCTTTTAGCTAAACTTGTTTGGGATTGAGCTGCAGTTATTGTTCAAGAAAAAAAAATCTCATTTTTAGCTAACTTGTTTGAGATTGAGGTGTAGTTATTGTTGCTGTTGTTGTGGTTCAGGAAAAATGGACTTAAAATCTCTTTTTTTAGCTAACTTGTTTTGGGATTGAGGTGCTGTTATTGTTGTTGTTCAAGAAATGGAGTTCAAAATCTCTTTTTTTTTTTAGCTAACTTGATTGGGATTGTAGGTATTATTGTTCAAGAAAATGGACTTCAACTCTTTTTATAGCTGTGTCAAAAAAGAAAAGAAGTGGGGTTTTGTAAAGCGGATCCCAACTTATTTGGAACTGAGGCTTAGTTATTGTTGTTCAAGAAAATGGAATTTAGCCTCTTTTTATAGATGATCCAACTTGTTTGGGATTGAGACATAGTTATTGTTGTTCAAGAAAATGGACTTTAGTCTCTTTATTTAGATATGAGCTTTAATGAAGAACTAAGGATTCATATAGCCGACCCAGACTTGTTTGCAAAACGTAGTTATTGCTATTCAGAAATATAGACTTCGTAAAGAAGAAGCATAAAAGATCCTTTTTTTAGGTGAAAGATTGTAACTTTGCTTTCTTTTTGTGTTGATTTATGCAGGATGTTGATGTGGGAAGATGGATTCTGCAGAGGTAGAGGAACAGATTGCTTGGAAGAGATGGATGGTGAAGATCTTGTGAGAAAAGCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTGGGTACTGGGTAGGTGATTTGGTTGGTATTGGATTTTTGAAACTCTCCATCTCCACACTCTCTCACCACTGAATAATAATAATGGACAATAGTATATATAAATAGAGAATCAAAAGGTGGAGGAGACAAAAGATTTGTAACTATTTTTTCTGTTTTGATTGGTTGGGTTTTGGTTTTGCAGGTTGATGGGTAAAGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAGGAACCTACAGAATGTGAACCAAACATATCTAATTACTGGCAGAGTTCATTTGATGCTGTATGTTTACTTTCATTTATGTTTGGTTATCTTAGGGAACTGATTTTTTTTTTTCATTTGCCAATTATTGGTCTGATAAAGATTGTATGGTTGATGATGATTTAACTTCTGCAGCTCCCACCTGAGTGGACTGACCAGTTTGAGTCAGGGATTCAGGTCAGCTTCATAACTCCAGAACAATAATTGCCTCTCTATCTTATTTGTTTACAAAAAAAAAATGGAGTCTTGGCGTAATTTAAAGTTGTCTCCATGTGACCAAGAGGTCACGGGGTCGTGTCAGGTCGAGTTGTGGAAATAGCCTCGTCTTGCCCTTTCCTGGACCCCGCGCATAGTGGGAAGTTAGTGTGCACCAGGCTGCCCTATATGAAGATTTCTTGGATTGTTTTGTATGGCATTTTTTGCTTTGCTTTATGTGTGTGTGTGACAGTGTACTGTTTTTATGTTGCAGACTATTGCTGTGATTCAAGCTGGACATGGCCTACTGCAACTGGGATCCTGCAAGATTGTAAGACTTATTTCCCTAAAAAAGAGATCTTGTTTATTTTAGTTGCTACTATAATCTTTGTTTATCTATGGACATGTGATTACTGTGTCGGATCCTCCAAAAGTAGTGCATTTTTGGAGTATCTAACACGAGTACTAGTCTGAGCAACATAGTTGGTTACTTAATATGAATAAAGCACTTTGATGTAATTTAGATGAGAATGTTGTATCCTTCTCAGATACCGGAAGACCTCCATTTCGTGTTAAGAATGAGGCACACGTTCGAGTCACTAGGCTATCAATCTGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAGACATCAAATCCGAACTCAGATGCTTCTAGCTTGCACAACAACGGAGGTGCTAATCCAAACGATTTCTTGAGCCTGGATAGCCACCCTGATAGCATTCGGAAGATGGACAAGTTCAAGAGAAGCTATACGCTTCCTGCTAGGATGGCTTCGTCTTCTAATTCATCGACTTCACTTGATCAGCACGCTAATAATCCCGGAGAATATAGGAATGAAGGAGGAATGTACCCTGATGTGATGGAGAGATTCTTGGAATGATCTTTCTAGGGTTATGGTTGGGAGAAGTTGTACTTAAGAAAAAGCTTTTAGTTGTGTTTTCTGCTTAATTTAGTGTTCTTTTAATAGTTTGATTTTCCTTCATCCTTTGGACCATTGAATGTTTCCACTTTTTTCTTGTAGTCTTTTTGATCAGTTTATCTAGAAATGAAGGAAAATTTATGCTTCTCTATGATTTTTTTTTGTAGGAAGAATATGGATGTCTAGTAGATTTAAAACTAGGGTAGTGTTGTCTGGATATTTCAAAAATGTTGTTGCTTTCGTGTCGGATCATTAAAATATCATGCATTTCTGGTAACATGGTTTGTTAAAAAGAAAAATCACTTCAGGCATCTTAATTTAACTGTGTTAGTTTGACGAAATTTAAGAAATAATGGGAGATTTTTAAATATTGTAATTTTAAACTTACTATGTAAAATGTTGAAATTGAAAACTTATTGAATACAATACAAAAGAAAAGTAAGACATTTAAATTAGGACCGAGTAATTATAGGGTCAAAGTTGAGGAGTGTTTTGTGTAACCTTAGTATAACCACTACATATGTGGGTCAACATTTGAAAAAATGGGTGTGATGACAAATAATAGATCAAATCCTATTGACATTTGGTGAGTTGACATTATACAATAAAGGAGCCTAACTATTCAAAATAATATTTAGTTATAACTTCATGTTCCAAGATTTATCTAAAATAGTACTCTCATGTAAAAAACTAAAATAACATTACTGCTTGGTCCCTCCCTTTATTTTTTTATTTTTATTTTTCTTATTTAATATTTGATATCTGTATTTAAAAATCGTGACCTATTTGATAAAATGAATAACAATTGATCCTACCTTTTCCTCTTGTTCATGTTTTGAGTGGAGGACCCATTTGTACAATATTTCAACAAAATCATTAGGAATTGATAAGATAATAATAAAAAGAAATGCTATATTTGAAAGTAAAAGATTTATAATTATTCATCACTTTTAATCGAACTTAAAATCACTTAGAGCTAGCATGAAAGGTATGAATTCTATCAAACTCATACGAACTATATAGATTCATCGAATACATGTTATAAATTTCAGAATTACAAACTTTAAAATTTTAAATCTGTTTTTATCCGATACCGGACATTAGCTAAAAAAAAAAAAAAAACTA</genome_strand>
        <mrna_strand>GGAAGAAGAAAAAAGGGTCTCTATCTTTGTGGTTGATAAGCATTTGTATTGTATAGTTTTAGCTCAACAAGATAAAAAAAAAAAAAAAAAACAATAAAAATTGAATCTTTAAGAGAAATTTTTCTAGAGGAGTTTGAAGTTTGAGTGTTGAGAAGAGAAAAGGGGTTTAGTTTTTATTATTAAAGAGAGAAGTGGGAAAAAAAAGGGGAAAAAATGGTGGGCTCAGGAACAGCAGATAGAAGCAAAGAAGCAGTTGGGATGATGGCCCTTCATGAGGCACTAAGAAGCGTCTGTCTTAACACAGACTGGACTTATTCAGTGTTCTGGACCATTCGTCCTCGACC...............................................................................GAGAGTTAGAGGTGGTAATGGTTGTAAAGTTGGAGATGACAATGGTAGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGTGGGAAGATGGATTCTGCAGAGGTAGAGGAACAGATTGCTTGGAAGAGATGGATGGTGAAGATCTTGTGAGAAAAGCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGG.......................................................................................................................................................................................GTTGATGGGTAAAGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAGGAACCTACAGAATGTGAACCAAACATATCTAATTACTGGCAGAGTTCATTTGATGCT..................................................................................................................CTCCCACCTGAGTGGACTGACCAGTTTGAGTCAGGGATTCAG....................................................................................................................................................................................................................................................................................................ACTATTGCTGTGATTCAAGCTGGACATGGCCTACTGCAACTGGGATCCTGCAAGATT.........................................................................................................................................................................................................................ATACCGGAAGACCTCCATTTCGTGTTAAGAATGAGGCACACGTTCGAGTCACTAGGCTATCAATCTGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAGACATCAAATCCGAACTCAGATGCTTCTAGCTTGCACAACAACGGAGGTGCTAATCCAAACGATTTCTTGAGCCTGGATAGCCACCCTGATAGCATTCGGAAGATGGACAAGTTCAAGAGAAGCTATACGCTTCCTGCTAGGATGGCTTCGTCTTCTAATTCATCGACTTCACTTGATCAGCACGCTAATAATCCCGGAGAATATAGGAATGAAGGAGGAATGTACCCTGATGTGATGGAGAGATTCTTGGAATGATCTTTCTAGGGTTATGGTTGGGAGAAGTTGTACTTAAGAAAAAGCTTTTAGTTGTGTTTTCTGCTTAATTTAGTGTTCTTTTAATAGTTTGATTTTCCTTCATCCTTTGGACCATTGAATGTTTCCACTTTTTTCTTGTAGTCTTTTTGATCAGTTTATCTAGAAATGAAGGAAAATTTATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314553" ref_strand="+" ref_description="SGN-E314553 [cTOA-20-K5]">
      <seq>gcttgatgttgatgtgggaagatggattctgcagaggtagaggaacagattgcttggaagagatggatggtgaagatcttgtgagaaaagccttcagcaaaatgtccattcagttatataattatggagaagggttgatgggtaaagttgcatctgataagtgtcataaatgggttttcaaggaacctacagaatgtgaaccaaacatatctaattactggcagagttcatttgatgctctcccacctgagtggactgaccagtttgagtcagggattcagactattgctgtgattcaagctggacatggcctactgcaactgggatcctgcaagattataccggaagacctccatttcgtgttaagaatgaggcacacgttcgagtcactaggctatcaatctggcttttatttgtcacaactattttcttcaacaaggactagttcaccttcgtctgcaattcctctttagcagccgaccatgccaattcgcgctcctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="123244" stop="125153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123548" g_stop="123676" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="133" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123677" i_stop="123859" i_length="183">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123860" g_stop="123965" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="239" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123966" i_stop="124079" i_length="114">
            <donor d_prob="0.549" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124080" g_stop="124121" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124122" i_stop="124413" i_length="292">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124414" g_stop="124470" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="338" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124471" i_stop="124687" i_length="217">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124688" g_stop="124853" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="504" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E314553" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123548" e_stop="123676"/>
          <exon e_start="123860" e_stop="123965"/>
          <exon e_start="124080" e_stop="124121"/>
          <exon e_start="124414" e_stop="124470"/>
          <exon e_start="124688" e_stop="124853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGATGTGGGAAGATGGATTCTGCAGAGGTAGAGGAACAGATTGCTTGGAAGAGATGGATGGTGAAGATCTTGTGAGAAAAGCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTGGGTACTGGGTAGGTGATTTGGTTGGTATTGGATTTTTGAAACTCTCCATCTCCACACTCTCTCACCACTGAATAATAATAATGGACAATAGTATATATAAATAGAGAATCAAAAGGTGGAGGAGACAAAAGATTTGTAACTATTTTTTCTGTTTTGATTGGTTGGGTTTTGGTTTTGCAGGTTGATGGGTAAAGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAGGAACCTACAGAATGTGAACCAAACATATCTAATTACTGGCAGAGTTCATTTGATGCTGTATGTTTACTTTCATTTATGTTTGGTTATCTTAGGGAACTGATTTTTTTTTTTCATTTGCCAATTATTGGTCTGATAAAGATTGTATGGTTGATGATGATTTAACTTCTGCAGCTCCCACCTGAGTGGACTGACCAGTTTGAGTCAGGGATTCAGGTCAGCTTCATAACTCCAGAACAATAATTGCCTCTCTATCTTATTTGTTTACAAAAAAAAAATGGAGTCTTGGCGTAATTTAAAGTTGTCTCCATGTGACCAAGAGGTCACGGGGTCGTGTCAGGTCGAGTTGTGGAAATAGCCTCGTCTTGCCCTTTCCTGGACCCCGCGCATAGTGGGAAGTTAGTGTGCACCAGGCTGCCCTATATGAAGATTTCTTGGATTGTTTTGTATGGCATTTTTTGCTTTGCTTTATGTGTGTGTGTGACAGTGTACTGTTTTTATGTTGCAGACTATTGCTGTGATTCAAGCTGGACATGGCCTACTGCAACTGGGATCCTGCAAGATTGTAAGACTTATTTCCCTAAAAAAGAGATCTTGTTTATTTTAGTTGCTACTATAATCTTTGTTTATCTATGGACATGTGATTACTGTGTCGGATCCTCCAAAAGTAGTGCATTTTTGGAGTATCTAACACGAGTACTAGTCTGAGCAACATAGTTGGTTACTTAATATGAATAAAGCACTTTGATGTAATTTAGATGAGAATGTTGTATCCTTCTCAGATACCGGAAGACCTCCATTTCGTGTTAAGAATGAGGCACACGTTCGAGTCACTAGGCTATCAATCTGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTC</genome_strand>
        <mrna_strand>GATGTTGATGTGGGAAGATGGATTCTGCAGAGGTAGAGGAACAGATTGCTTGGAAGAGATGGATGGTGAAGATCTTGTGAGAAAAGCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGG.......................................................................................................................................................................................GTTGATGGGTAAAGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAGGAACCTACAGAATGTGAACCAAACATATCTAATTACTGGCAGAGTTCATTTGATGCT..................................................................................................................CTCCCACCTGAGTGGACTGACCAGTTTGAGTCAGGGATTCAG....................................................................................................................................................................................................................................................................................................ACTATTGCTGTGATTCAAGCTGGACATGGCCTACTGCAACTGGGATCCTGCAAGATT.........................................................................................................................................................................................................................ATACCGGAAGACCTCCATTTCGTGTTAAGAATGAGGCACACGTTCGAGTCACTAGGCTATCAATCTGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTTAGCAGCCGACCATGCCAATTCGCGCTCCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239503" ref_strand="+" ref_description="SGN-E239503 [cLED-23-H6]">
      <seq>tggcttttatttgtcacaactattttcttcaacaaggactagttcaccttcgtctgcaattcctcttaagcagccgaccatgccaattcgcgctcctcctccacttttcaactggggaccaaggccaatgccttcagcgtcttcgctactatcgtctcccaacttccagaactccgcgagacttggtattccacagtcgaaagatgaatcacatatgttccttcaacttcctcattcatccgaaccacgaatggaagacatgatgggagctgctgctgatcatgagagtgatatcaagtggcctaatggattaactttctttagtgctctcactggtagaaatgatgattccaggatcctgttcaatcctgatagcttaggttccaaaccggatcataatcagcatccgcttagtcttgatgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="124453" stop="125479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124753" g_stop="125179" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E239503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124753" e_stop="125179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAG</genome_strand>
        <mrna_strand>TGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237524" ref_strand="+" ref_description="SGN-E237524 [cLED-19-B23]">
      <seq>cagccgaccatgccaattcgcgctcctcctccacttttcaactggggaccaaggccaatgccttcagcgtcttcgctactatcgtctcccaacttccagaactccgcgagacttggtattccacagtcgaaagatgaatcacatatgttccttcaacttcctcattcatccgaaccacgaatggaagacatgatgggagctgctgctgatcatgagagtgatatcaagtggcctaatggattaactttctttagtgctctcactggtagaaatgatgattccaggatcctgttcaatcctgatagcttaggttccaaaccggatcataatcagcatccgcttagtcttgatgggaagacatcaaatccgaactcagatgcttctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="124523" stop="125509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124823" g_stop="125209" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E237524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124823" e_stop="125209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAGACATCAAATCCGAACTCAGATGCTTCTAGC</genome_strand>
        <mrna_strand>CAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAGACATCAAATCCGAACTCAGATGCTTCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368651" ref_strand="+" ref_description="SGN-E368651 [TUS-22-H8]">
      <seq>cgacacatgccaatttgcgctcctcctccacttttcaactggggaccaaggccaatgccttcagcgtcttcgctactatcgtctcccaacttccagaactccgcgagacttggtattccacagtcgaaagatgaatcacatatgttccttcaacttcctcattcatccgaaccacgaatggaagacatgatgggagctgctgctgatcatgagagtgatatcaagtggcctaatggattaactttctttagtgctctcactggtagaaatgatgattccaggatcctgttcaatcctgatagcttaggttccaaaccggatcataatcagtatcccgcttagtcttgatgggaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="124527" stop="125482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124827" g_stop="125182" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E368651" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124827" e_stop="125182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAC-CATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCAT-CCGCTTAGTCTTGATGGGAAGACA</genome_strand>
        <mrna_strand>CGACACATGCCAATTTGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGTATCCCGCTTAGTCTTGATGGGAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718526" ref_strand="+" ref_description="SGN-E718526 [FC04DG03]">
      <seq>gggcgattggcggccaatcggccgaattggttttcttcgtttttattaattttgcatcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132941" stop="136240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133241" g_stop="133310" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="94" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="337" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="614" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="769" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="135940" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="854" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E718526" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133241" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="135940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTTTCTTCGTTTTTATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTC</genome_strand>
        <mrna_strand>AATTGGTTTTCTTCGTTTTTATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747435" ref_strand="+" ref_description="SGN-E747435 [GI|46277127]">
      <seq>tattaattttgcatcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttttgtcgatggtttggttggtcgtgttactgtataaacgttttaaagttccaacatcaggagctgttcgcacacgaactcaaataaacggaatgttgtttgctaggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132960" stop="136500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133260" g_stop="133310" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="294" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="571" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="726" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="136188" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1058" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1059" polyA_stop="1082"/>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E747435" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1059</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133260" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAACTTCAAATAAACGGAATGTTGTTTGCTAGG</genome_strand>
        <mrna_strand>TATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAAC-TCAAATAAACGGAATGTTGTTTGCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706265" ref_strand="+" ref_description="SGN-E706265 [FA29BH10]">
      <seq>cgattttgcatcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcangaagctgcagattgcattanagatattaaggatgcgcgatcagctgcaaagcatctncatgaacatgctcttgncaagggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132965" stop="136306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133263" g_stop="133310" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="291" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="568" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="723" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="136006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="874" r_length="151" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E706265" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133263" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTG</genome_strand>
        <mrna_strand>CGATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCANGAAGCTGCAGATTGCATTANAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTNCATGAACATGCTCTTGNCAAGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699800" ref_strand="+" ref_description="SGN-E699800 [FA11BA05]">
      <seq>cctttgcatcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcangaagctgcagattgcattaaagatattaaggaatgcccgatcactgcaaagcatctcaatgaacatgcctcttgccaggggaagtaccgatgaaatatcctgcgtagttgtaaggttccaataatcttctccctctgcccttgttagatgatgaaacgggggcttaaatcgaatagtttctttgaaatgaaaatctgaactagtacctgcttttgtccaaggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132967" stop="136396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133265" g_stop="133310" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="289" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="566" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="721" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="136096" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="962" r_length="241" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E699800" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133265" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGG-ATGCGCGATCAGCTGCAAAGCATCTCAATGAACATG-CTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTG</genome_strand>
        <mrna_strand>CCTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCANGAAGCTGCAGATTGCATTAAAGATATTAAGGAATGCCCGATCA-CTGCAAAGCATCTCAATGAACATGCCTCTTGCCAGGGGAAGTACCGATGAAATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCCCTCTGCCCTTGTTAGATGATGAAACGGGGGCTTAAATCGAATAGTTTCTTTGAAATG-AAAATCTGAACTAGTACCTGCTTTTGTCCAAGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254631" ref_strand="+" ref_description="SGN-E254631 [cLEG-29-M9]">
      <seq>ttgcatcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggtgggtttgggttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132968" stop="135298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133268" g_stop="133310" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="286" r_length="243" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="134998" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="531" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E254631" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133268" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="134998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGA</genome_strand>
        <mrna_strand>TTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTGGGTTTGGGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271360" ref_strand="+" ref_description="SGN-E271360 [cLEM-5-I9]">
      <seq>catcatgactggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132971" stop="135276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133271" g_stop="133310" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="283" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="134976" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="506" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E271360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133271" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="134976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTG</genome_strand>
        <mrna_strand>CATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271718" ref_strand="+" ref_description="SGN-E271718 [cLEM-23-F8]">
      <seq>actggaggcaaataaatcatcgacaaaattaaggaaaaggttggtttaaggtcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132978" stop="135336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133278" g_stop="133310" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="276" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="553" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135265" i_length="235">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135266" g_stop="135273" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="561" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E271718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133278" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135266" e_stop="135273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCT</genome_strand>
        <mrna_strand>ACTGGAGGCAAATAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGGTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG...........................................................................................................................................................................................................................................GTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255681" ref_strand="+" ref_description="SGN-E255681 [cLEG-36-P12]">
      <seq>actggaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132978" stop="135295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133278" g_stop="133310" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="276" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="134995" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="518" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E255681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133278" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="134995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCAT</genome_strand>
        <mrna_strand>ACTGGAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259309" ref_strand="+" ref_description="SGN-E259309 [cLEG-43-G5]">
      <seq>actggaggcaaagaaatcatcgacaaaattaaagaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataaccccatgggtatcaccatggttgagggaaaatcgcatcaccacccatggaagattatgtttttgcaccagtttaaaccaagttgatgaaaatgaaccttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaaccaatattctcaatgagccctaaccttctgggcctgaaccggagtctgcaatcaggaaagccctaccgtataaccagataccaacctattttggataaggctgctgatttgggtaaaggaggatccactgctgttaccagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttaccaaaaatggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132978" stop="135245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133278" g_stop="133310" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="284" r_length="251" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="134945" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="485" r_length="201" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E259309" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133278" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="134945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGGAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAA-CCCATGGGTATCA-CATGGTTGAGGGAAAATCGCATCA-CA-CCATGGAAGATTATGTTTTTGCA-CAGTTTAAA-CAAGTTGATGAAAATGAA-CTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAA-CAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAG-CCTAA-CTTCTGGG-CTGAACCGGAGTCTGCAATCAGGAAAG-CCTACCGTATAA-CAGATA-CAA-CTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTA-CAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTA-CAAAAATGGAGTG</genome_strand>
        <mrna_strand>ACTGGAGGCAAAGAAATCATCGACAAAATTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCCATGGGTATCACCATGGTTGAGGGAAAATCGCATCACCACCCATGGAAGATTATGTTTTTGCACCAGTTTAAACCAAGTTGATGAAAATGAACCTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACCAATATTCTCAATGAG........................................................................................................................................................CCCTAACCTTCTGGGCCTGAACCGGAGTCTGCAATCAGGAAAGCCCTACCGTATAACCAGATACCAACCTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACCAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACCAAAAATGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711045" ref_strand="+" ref_description="SGN-E711045 [FA57DB05]">
      <seq>gaggcaaagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatccaccccccccccccggnnaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacctgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132982" stop="136294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133282" g_stop="133310" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="272" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="549" r_length="277" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="704" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="135994" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="843" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E711045" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133282" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="135994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAAAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAAT</genome_strand>
        <mrna_strand>GAGGCAAAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATCCACCCCCCCCCCCCGGNNAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACCTGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710549" ref_strand="+" ref_description="SGN-E710549 [FA55DB01]">
      <seq>aagaaatcatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccgatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcangaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132988" stop="136299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133288" g_stop="133310" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="266" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="543" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="697" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="135999" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="841" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E710549" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133288" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="135999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCT</genome_strand>
        <mrna_strand>AAGAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCC-GATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCANGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362594" ref_strand="+" ref_description="SGN-E362594 [cLPP-1-H15]">
      <seq>gaaatcatcgacaaaattaaggaaaaggttggtttaagttcatcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttaagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggttgaaccggagtctgcaatcaggaaagcctaccgtataacagatacgactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgtagctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132990" stop="135304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133290" g_stop="133310" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="264" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135004" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="515" r_length="251" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E362594" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133290" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAA</genome_strand>
        <mrna_strand>GAAATCATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCATCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTAAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGTTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACGACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTAGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723183" ref_strand="+" ref_description="SGN-E723183 [FC19CG04]">
      <seq>ggcgattggcggccaaatcggccgaattccatggggatccgaccatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132993" stop="136243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133295" g_stop="133310" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="59" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="302" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="579" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="734" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="135943" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="822" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E723183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133295" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="135943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTG</genome_strand>
        <mrna_strand>CATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724396" ref_strand="+" ref_description="SGN-E724396 [FC24AA02]">
      <seq>cccatggggatccgctgatcgacaaaattaaggaaaaggttggtttaagttcgtcagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttttgtcgatggtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="132994" stop="136397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133296" g_stop="133310" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="32" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134359" g_stop="134601" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="275" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="552" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="707" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135856" g_stop="136097" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="949" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E724396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133296" e_stop="133310"/>
          <exon e_start="134359" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACAAAATTAAGGTACATATACATAATTAAAATTGCTAATCTACCCTGATCTATGTAATTTACTCTTGGATCTTAATTAATTGTAATTAATTCAGCTTATTTTGGTTTTCATTTTGCAGAAAAAAATAATTACTAATTCTTTTTAAGAAAAATAATAATTTACGTTTATTATGGTTTTCCCCTCAAAATAACATATTCAATTAGCCTTCTATTTGTTGTTACAATATATGTTTGAATATATGATGATTAGTATTTAGTGTTGTCCCACAAAAGTTAGTTGTTAACATCAAACAACATATCCAATGTAATAATTGCGGGAAGGTTAGAATGTACGTAGATTTTATCTGACTTTTGTGATATATAGAGTTTGTTTTCGATAAATTTACTTAATCAACAGTTATTTCATAGCAAGTAAACTTAGCTGATGAAGTAAAGTGTCAAAATTTAAAATTGAAGTCTTAGTATAGAGTAGCTGTTTGTGGTTTTAATTTGTTAAAGGAAAAATAAGTTTACCGAGGCTGATGAAGGTTTTCAATGGCGGAGACAGGATTTTCGTGCAATACGGGATTCATTATCTATTTTGTTGTATTCATAAATAAGAAAGTTAATTTTATATATACGGTATAATTTTTAGGTGAAGGGGCTCAGATGAACCCTTTCGTCCCTCTAGCTCCGTCATTGATGATGTAAAATGAGTTTAAATGTTTGAGATTGAGGCATAGCAGTTGTTTTTGTTGGTAAAAGAAGGGGACTGAGAAGTTGGCATTAAGAACTTATACCTCTTTTGTCAAGCTATTTATCTTAAGCTTTTATTACTATTAATGTTAATCTAAGTGGCATTACGTGTATATATATGTATATGATTGTTCAATTGTGGTTTGTTTATTCAGTATCTCAGCTTATGTGGAAATTTTGCCACTTTGTGGGATTATACTGGATCAGTTGTTGTTGTATCTCAGCTTCTATGGAAAATTTGCGACTGTGGTGAAGTTTTTTCCAAGTACTATGATGAATTGCCTGATATATACATGTGCGGTGACATGATTTTTTCGTTTGGCAGGAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGG</genome_strand>
        <mrna_strand>ATCGACAAAATTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697678" ref_strand="+" ref_description="SGN-E697678 [FA03DB07]">
      <seq>cagataccggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacctgtgcttaaatcgtatagtttctttgaaaatgaaaaatctgaactaatacttgcttttgtcgatggttgggttggccgtgttactgtataaaggttttaaagttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="134081" stop="136436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134381" g_stop="134601" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="498" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="653" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135856" g_stop="136143" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="942" r_length="289" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E697678" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134381" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTG-AAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAG</genome_strand>
        <mrna_strand>CAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACCTGTGCTTAAATCGTATAGTTTCTTTGAAAATGAAAAATCTGAACTAATACTTGCTTTTGTCGATGGTTGGGTTGGCCGTGTTACTGTATAAAGGTTTTAAAGTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703434" ref_strand="+" ref_description="SGN-E703434 [FA21CA01]">
      <seq>ggaagaggtaagagtaagatgtcgaagaacataacccatgggtatcacatggttgagggaaaatcgcatcacaccatggaagattatgtttttgcacagtttaaacaagttgatgaaaatgaacttggtctatttgcaatatttgatggccatttgagccacgagattcctgagtacctccgctctcatctattcaacaatattctcaatgagcctaacttctgggctgaaccggagtctgcaatcaggaaagcctaccgtataacagatacaactattttggataaggctgctgatttgggtaaaggaggatccactgctgttacagccatattgattaatggtcagaaactagttgttgctaatgtcggagattctcgtgccgtcatttacaaaaatggagtggccaagcagctgtccatcgatcatgagcctggcagggagagggagatcatcgagggcaaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttcccataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="134089" stop="136383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134389" g_stop="134601" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134754" g_stop="135030" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="490" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="645" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135856" g_stop="136083" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="873" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E703434" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134389" e_stop="134601"/>
          <exon e_start="134754" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAGGTAATGCTTTCGCATTACTATTAAATGCTTGACATGTATTGTGTAGAGTTAGTTTCGGTCTTCAGTTAGTGCCGGTTGTTGTGCTTTCAGTTTCGTGACTCTTTGCTTGAATTCTATGAACTTCCGTCACATTTTCTGTTTCATTTATGTAGCCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTT</genome_strand>
        <mrna_strand>GGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG........................................................................................................................................................CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCCATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201092" ref_strand="-" ref_description="SGN-E201092 [cLEC-10-O15]">
      <seq>aaaggtggtttcgtgtccaattttccaggtgatgttcctcgggttgatgggcagttaccagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttttgtcgatggtttggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="134703" stop="136401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135003" g_stop="135030" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="183" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135856" g_stop="136101" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="429" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E201092" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201092" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135003" e_stop="135030"/>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGGTTTCGTGTCCAATTTTCCAGGTGTGTAGCTATAATTTGTAATTTTTGTGAAGAGTCTGAAGGTAATCATGGAAGAAATCAGTCCGTACCAAATGGTATCTTCATTTATGCGTCAATGATAGGAACGAACAAGCCTTAGTACTGTTCAAATGAATTTCGTTTACTAGATCTAAGTTACGTACTACCTTGATCATATGTGGGAATTTGCTTTTGAGTCCAATTTCTCATCGACATTAGGTTAGTTATTCAAATGCAGATGTTGCTTCGACCGTAGTGTCGTTTTAGAGGAGTTCAAGGTGTAGTAGGTTTGCAAATACAGAGTCGAAACCCCCTTCGCCAAAACCAAGAAGTTTTTGCTCATGTCCATTGGGAAATAGTATGTGGAACTTCGTTGAGAACTATGGCCGTCTGCGAATATGTTGTTCTGGGCCAGGTCTTAGTTGATAGACAGAATCGGGGACGAAAGCAGGGGCATGATTGCTGGTGCTTCTATTCTATTGTGCTCGAGTTTTGTGTTTTCTGTTTAAAACAAAGTTCCCCTCTTCTCCTCTATTCAGGTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGG</genome_strand>
        <mrna_strand>AAAGGTGGTTTCGTGTCCAATTTTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTCCTCGGGTTGATGGGCAGTTACCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395313" ref_strand="-" ref_description="SGN-E395313 [TUS-43-M11]">
      <seq>ccccccccctccaggtgatgttcctcaggttgatgggcagttagcagtagcaagagcatttggcgacaagagcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttttgtcgatgctttggctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="135254" stop="136402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135567" g_stop="135721" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="169" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135856" g_stop="136102" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="416" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E395313" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395313" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135567" e_stop="135721"/>
          <exon e_start="135856" e_stop="136102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGT</genome_strand>
        <mrna_strand>GTGATGTTCCTCAGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGCTTTGGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352807" ref_strand="+" ref_description="SGN-E352807 [cTOS-11-I15]">
      <seq>gcttgaagatgcatttaagttcagagccagatgtagtggtagagctcatagatgatgacacagagtttctcattttggctagtgacggcgtatggaaggtactgtcgaatcaggaagctgcagattgcattaaagatattaaggatgcgcgatcagctgcaaagcatctcaatgaacatgctcttgcaaggggaagtaccgatgatatatcctgcgtagttgtaaggttccaataatcttctctctctgcacttgttagatgatgaaacgtgtgcttagatcgtatagtttctttgaaatgtaaaatctgaactagtacttgcttttgtcgatggtttggttggtcgtgttactgtataaacgttttaaagttccaacatcaggagctgttcgcacacgaacttcaaataaacggaatgttgtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-i7NYH/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="135324" stop="136484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135624" g_stop="135721" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135856" g_stop="136184" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="427" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-E352807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135624" e_stop="135721"/>
          <exon e_start="135856" e_stop="136184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAGGTTAGCTACTTACATCACCAGAGCGTTAAATATGATTGGATTGTTTGTCGAATATATGATATCCTTTATGTTCTTGTGTGCATGACATAGTTGCTAAGTGTAACCTTTGTACAACTTTTTGCCTGAAATACCAGGTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAACTTCAAATAAACGGAATGTTGTTTGC</genome_strand>
        <mrna_strand>GCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG......................................................................................................................................GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAACTTCAAATAAACGGAATGTTGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>82</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11179" PGL_stop="9119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11179" e_stop="11134"/>
            <exon e_start="11043" e_stop="10979"/>
            <exon e_start="10023" e_stop="9848"/>
            <exon e_start="9403" e_stop="9119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11179" e_stop="11134" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="11133" i_stop="11044" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11043" e_stop="10979" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="10978" i_stop="10024" i_length="955"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10023" e_stop="9848" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="9847" i_stop="9404" i_length="444"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9403" e_stop="9119" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11179" stop="11134"/>
              <exon start="11043" stop="10979"/>
              <exon start="10023" stop="9848"/>
              <exon start="9403" stop="9119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGCACTATGGCAGCTTCAAACTCTTCATTTGATCAGACATCAG : CTGTAGCAGCAGAGGCTAAGAGTGGGGAAGATTTCTCAGTTCATGTGTTCTCTTCCTCCGCCGAG : TTAGTTGAGAAGTTGCACGAGAAGTGGAATTCAGTGAAGCAGCAACCTTATCCGGCTATGTATTCTAGTGTCTATGGTGGAATCATTCTTGAACCAGCAATGATGGTTATTCCAATGGATGATCACATGGTGCATCGAGGACATGGCGTCTTTGACACAGCTATTATTTTTGATGG : CTATCTGTACGAATTGGATGTCCACATTAACCGCTTCCTTAGATCAGCATCCAAAGCAAGGATCGCGTCTCCATTTACATTTTCAGAACTTAAAAGCATTCTTATTCAACTTTCTGCAGCATCAAAGTGCAGGAAAGGCACTCTGAGATATTGGTTGAGTGCAGGGCCTGGGAACTTCTTACTCTCCCCAGCTAAATGCCCGACATCTGCATTCTATGCTGTGGTGATTGATGAAGATTTCGCACAATGCAAAGAAGGTGTAAAAGTGATAACTTCTACGATCCC</gDNA_template>
            <first_frame> F  C  T  M  A  A  S  N  S  S  F  D  Q  T  S   : A  V  A  A  E  A  K  S  G  E  D  F  S  V  H  V  F  S  S  S  A  E  :  L  V  E  K  L  H  E  K  W  N  S  V  K  Q  Q  P  Y  P  A  M  Y  S  S  V  Y  G  G  I  I  L  E  P  A  M  M  V  I  P  M  D  D  H  M  V  H  R  G  H  G  V  F  D  T  A  I  I  F  D  G :   Y  L  Y  E  L  D  V  H  I  N  R  F  L  R  S  A  S  K  A  R  I  A  S  P  F  T  F  S  E  L  K  S  I  L  I  Q  L  S  A  A  S  K  C  R  K  G  T  L  R  Y  W  L  S  A  G  P  G  N  F  L  L  S  P  A  K  C  P  T  S  A  F  Y  A  V  V  I  D  E  D  F  A  Q  C  K  E  G  V  K  V  I  T  S  T  I   </first_frame>
            <second_frame>  F  A  L  W  Q  L  Q  T  L  H  L  I  R  H  Q  :  L  *  Q  Q  R  L  R  V  G  K  I  S  Q  F  M  C  S  L  P  P  P  S :   *  L  R  S  C  T  R  S  G  I  Q  *  S  S  N  L  I  R  L  C  I  L  V  S  M  V  E  S  F  L  N  Q  Q  *  W  L  F  Q  W  M  I  T  W  C  I  E  D  M  A  S  L  T  Q  L  L  F  L  M   : A  I  C  T  N  W  M  S  T  L  T  A  S  L  D  Q  H  P  K  Q  G  S  R  L  H  L  H  F  Q  N  L  K  A  F  L  F  N  F  L  Q  H  Q  S  A  G  K  A  L  *  D  I  G  *  V  Q  G  L  G  T  S  Y  S  P  Q  L  N  A  R  H  L  H  S  M  L  W  *  L  M  K  I  S  H  N  A  K  K  V  *  K  *  *  L  L  R  S  </second_frame>
            <third_frame>   L  H  Y  G  S  F  K  L  F  I  *  S  D  I  S :   C  S  S  R  G  *  E  W  G  R  F  L  S  S  C  V  L  F  L  R  R   : V  S  *  E  V  A  R  E  V  E  F  S  E  A  A  T  L  S  G  Y  V  F  *  C  L  W  W  N  H  S  *  T  S  N  D  G  Y  S  N  G  *  S  H  G  A  S  R  T  W  R  L  *  H  S  Y  Y  F  *  W  :  L  S  V  R  I  G  C  P  H  *  P  L  P  *  I  S  I  Q  S  K  D  R  V  S  I  Y  I  F  R  T  *  K  H  S  Y  S  T  F  C  S  I  K  V  Q  E  R  H  S  E  I  L  V  E  C  R  A  W  E  L  L  T  L  P  S  *  M  P  D  I  C  I  L  C  C  G  D  *  *  R  F  R  T  M  Q  R  R  C  K  S  D  N  F  Y  D  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11179" stop="11134"/>
                    <exon start="11043" stop="10979"/>
                    <exon start="10023" stop="9848"/>
                    <exon start="9403" stop="9121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCTMAASNSSFDQTSAVAAEAKSGEDFSVHVFSSSAELVEKLHEKWNSVKQQPYPAMYSSVYGGIILEPAMMVIPMDDHMVHRGHGVFDTAIIFDGYLYELDVHINRFLRSASKARIASPFTFSELKSILIQLSAASKCRKGTLRYWLSAGPGNFLLSPAKCPTSAFYAVVIDEDFAQCKEGVKVITSTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11730" PGL_stop="12434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11730" e_stop="12434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="11730" e_stop="12434" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11730" stop="12434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11731" stop="12246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATAACGAGGCAAAAATATCTTGGGCCTTTTAAACTTTCTCCTCTGTGCTGTGCTGACGCATTTTGTTGAAACTTGAATTCTTGCTTTGTTCTATTCTTCCTTCTTGTTTGTTGCTGAAATTTATCAGCTGAGTTCTTCTTTCTTGAGAGAATTGGGGAATTCTCAATTCTTGGAAAATTAGAGAAAGCTGGAGTCTTGCTGCTAATTTACCAACAGCATATACTAGGCGATGTTTTCACCTTCAATTTGCTTTCCAACAACAATTCTTCAAATTCAGCCAGATAACAGAAGTCGGTTCAGAACCCACAAATGTAAAAGCTATACTGATGACAGAAAACTTCCCTGTTTCTCTTTCAAAGACCCATCTTCCTCAGCTCGTTTTGATGTTTCTGCAAGTTTTTGTAGAGACAATGAATTAGTTTGTCAATTGGAAGTTCCAGGTGATAAAATTTGTTCAGTGAATAGTTTTGTGGCTGATTCAAGTTTGCTTGGTCGTTTGCTTCAATCTAGTTCTAGTTTAAAAGAAGTTAAAATACTTCATGCGATTGTTTTAAAGTGTTTGAGGAGCAGTACTATATTTGTTGAGAATAATTTGATTAGTGTGTTGGTGAAATTTGGGCGTTTGGATGATGCTCGTAAGGTGTTCGATCATATGCTCGAGAGGAATGTGGTTTCTTGGACTGCTATGCTTAATGGGTATTTG</gDNA_template>
            <first_frame> E  *  R  G  K  N  I  L  G  L  L  N  F  L  L  C  A  V  L  T  H  F  V  E  T  *  I  L  A  L  F  Y  S  S  F  L  F  V  A  E  I  Y  Q  L  S  S  S  F  L  R  E  L  G  N  S  Q  F  L  E  N  *  R  K  L  E  S  C  C  *  F  T  N  S  I  Y  *  A  M  F  S  P  S  I  C  F  P  T  T  I  L  Q  I  Q  P  D  N  R  S  R  F  R  T  H  K  C  K  S  Y  T  D  D  R  K  L  P  C  F  S  F  K  D  P  S  S  S  A  R  F  D  V  S  A  S  F  C  R  D  N  E  L  V  C  Q  L  E  V  P  G  D  K  I  C  S  V  N  S  F  V  A  D  S  S  L  L  G  R  L  L  Q  S  S  S  S  L  K  E  V  K  I  L  H  A  I  V  L  K  C  L  R  S  S  T  I  F  V  E  N  N  L  I  S  V  L  V  K  F  G  R  L  D  D  A  R  K  V  F  D  H  M  L  E  R  N  V  V  S  W  T  A  M  L  N  G  Y  L </first_frame>
            <second_frame>  N  N  E  A  K  I  S  W  A  F  *  T  F  S  S  V  L  C  *  R  I  L  L  K  L  E  F  L  L  C  S  I  L  P  S  C  L  L  L  K  F  I  S  *  V  L  L  S  *  E  N  W  G  I  L  N  S  W  K  I  R  E  S  W  S  L  A  A  N  L  P  T  A  Y  T  R  R  C  F  H  L  Q  F  A  F  Q  Q  Q  F  F  K  F  S  Q  I  T  E  V  G  S  E  P  T  N  V  K  A  I  L  M  T  E  N  F  P  V  S  L  S  K  T  H  L  P  Q  L  V  L  M  F  L  Q  V  F  V  E  T  M  N  *  F  V  N  W  K  F  Q  V  I  K  F  V  Q  *  I  V  L  W  L  I  Q  V  C  L  V  V  C  F  N  L  V  L  V  *  K  K  L  K  Y  F  M  R  L  F  *  S  V  *  G  A  V  L  Y  L  L  R  I  I  *  L  V  C  W  *  N  L  G  V  W  M  M  L  V  R  C  S  I  I  C  S  R  G  M  W  F  L  G  L  L  C  L  M  G  I   </second_frame>
            <third_frame>   I  T  R  Q  K  Y  L  G  P  F  K  L  S  P  L  C  C  A  D  A  F  C  *  N  L  N  S  C  F  V  L  F  F  L  L  V  C  C  *  N  L  S  A  E  F  F  F  L  E  R  I  G  E  F  S  I  L  G  K  L  E  K  A  G  V  L  L  L  I  Y  Q  Q  H  I  L  G  D  V  F  T  F  N  L  L  S  N  N  N  S  S  N  S  A  R  *  Q  K  S  V  Q  N  P  Q  M  *  K  L  Y  *  *  Q  K  T  S  L  F  L  F  Q  R  P  I  F  L  S  S  F  *  C  F  C  K  F  L  *  R  Q  *  I  S  L  S  I  G  S  S  R  *  *  N  L  F  S  E  *  F  C  G  *  F  K  F  A  W  S  F  A  S  I  *  F  *  F  K  R  S  *  N  T  S  C  D  C  F  K  V  F  E  E  Q  Y  Y  I  C  *  E  *  F  D  *  C  V  G  E  I  W  A  F  G  *  C  S  *  G  V  R  S  Y  A  R  E  E  C  G  F  L  D  C  Y  A  *  W  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11958" stop="12434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMFSPSICFPTTILQIQPDNRSRFRTHKCKSYTDDRKLPCFSFKDPSSSARFDVSASFCRDNELVCQLEVPGDKICSVNSFVADSSLLGRLLQSSSSLKEVKILHAIVLKCLRSSTIFVENNLISVLVKFGRLDDARKVFDHMLERNVVSWTAMLNGYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12259" PGL_stop="12007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12259" e_stop="12007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="12259" e_stop="12007" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12259" stop="12007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCTTTTAAACTAGAACTAGATTGAAGCAAACGACCAAGCAAACTTGAATCAGCCACAAAACTATTCACTGAACAAATTTTATCACCTGGAACTTCCAATTGACAAACTAATTCATTGTCTCTACAAAAACTTGCAGAAACATCAAAACGAGCTGAGGAAGATGGGTCTTTGAAAGAGAAACAGGGAAGTTTTCTGTCATCAGTATAGCTTTTACATTTGTGGGTTCTGAACCGACTTCTGTTATCTGGCT</gDNA_template>
            <first_frame> T  S  F  K  L  E  L  D  *  S  K  R  P  S  K  L  E  S  A  T  K  L  F  T  E  Q  I  L  S  P  G  T  S  N  *  Q  T  N  S  L  S  L  Q  K  L  A  E  T  S  K  R  A  E  E  D  G  S  L  K  E  K  Q  G  S  F  L  S  S  V  *  L  L  H  L  W  V  L  N  R  L  L  L  S  G  </first_frame>
            <second_frame>  L  L  L  N  *  N  *  I  E  A  N  D  Q  A  N  L  N  Q  P  Q  N  Y  S  L  N  K  F  Y  H  L  E  L  P  I  D  K  L  I  H  C  L  Y  K  N  L  Q  K  H  Q  N  E  L  R  K  M  G  L  *  K  R  N  R  E  V  F  C  H  Q  Y  S  F  Y  I  C  G  F  *  T  D  F  C  Y  L  A </second_frame>
            <third_frame>   F  F  *  T  R  T  R  L  K  Q  T  T  K  Q  T  *  I  S  H  K  T  I  H  *  T  N  F  I  T  W  N  F  Q  L  T  N  *  F  I  V  S  T  K  T  C  R  N  I  K  T  S  *  G  R  W  V  F  E  R  E  T  G  K  F  S  V  I  S  I  A  F  T  F  V  G  S  E  P  T  S  V  I  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13440" PGL_stop="14299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13440" e_stop="14079"/>
            <exon e_start="14112" e_stop="14299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.328" acc_prob="0.630" e_score="0.961"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="13440" e_stop="14079" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="0.328" acc_prob="0.630">
            <gDNA_intron_boundary i_start="14080" i_stop="14111" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="14112" e_stop="14299" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13440" stop="14079"/>
              <exon start="14112" stop="14299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13482" stop="13979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGTTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGTTCATAGCTATGTCATCGGCTTACTTCTGGACCATGATGGACATGTCTAGTAGCCCCTGCCTCGCCTGATAAAGAATGAGGTACAATTTATCGGACTGTGCTTTTAGAGGTCCATCATATTTGAACGTTGTATCTTCTAACCTCA : TGATACTCTGTATTATACGTAGTTAGGTCCCTACGACCGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGTGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTGTACTAGATATTTGAATGTTAAAAACATACTAGTAACATTCATGATTGTCTTCAAATTTTTAGCTAAA</gDNA_template>
            <first_frame> C  A  K  L  E  D  I  E  R  G  K  L  I  H  S  S  I  S  K  T  P  A  L  S  N  V  F  V  G  S  A  L  I  N  M  Y  A  K  C  G  H  L  P  E  A  I  Q  I  F  D  N  M  P  E  K  N  L  V  S  W  K  A  M  I  V  A  Y  A  K  N  G  N  C  G  E  A  L  K  L  M  Y  R  M  Q  V  E  G  I  E  V  D  D  Y  I  L  A  T  V  L  T  A  C  G  E  Y  K  E  T  I  K  S  K  S  K  Y  F  L  H  P  N  S  S  I  T  *  T  D  M  S  L  L  K  K  L  Q  R  N  T  T  T  Y  P  V  *  M  M  V  S  F  M  S  Q  *  Q  L  N  S  E  R  F  M  L  R  V  W  F  I  A  M  S  S  A  Y  F  W  T  M  M  D  M  S  S  S  P  C  L  A  *  *  R  M  R  Y  N  L  S  D  C  A  F  R  G  P  S  Y  L  N  V  V  S  S  N  L   : M  I  L  C  I  I  R  S  *  V  P  T  T  A  Y  C  H  I  K  I  M  Y  T  *  T  F  S  *  *  S  D  K  E  K  V  I  T  T  T  M  C  T  R  Y  L  N  V  K  N  I  L  V  T  F  M  I  V  F  K  F  L  A  K </first_frame>
            <second_frame>  V  Q  S  W  K  I  S  R  E  G  S  *  S  I  P  L  *  A  R  H  L  L  C  P  M  C  L  W  A  V  H  *  S  I  C  M  Q  N  V  D  I  F  L  R  Q  F  K  Y  L  I  T  C  L  R  R  I  W  F  L  G  R  R  *  L  L  L  M  L  K  T  G  T  V  E  R  H  *  S  S  C  I  V  C  K  *  R  V  L  R  W  M  I  I  S  L  L  L  F  S  Q  H  V  E  N  I  R  K  L  S  S  P  N  R  S  I  S  C  I  Q  I  V  L  *  P  K  Q  I  *  V  S  S  R  S  F  S  E  I  Q  Q  H  I  Q  C  K  *  W  F  R  S  C  L  N  D  S  *  T  L  S  V  S  C  *  E  S  G  S  *  L  C  H  R  L  T  S  G  P  *  W  T  C  L  V  A  P  A  S  P  D  K  E  *  G  T  I  Y  R  T  V  L  L  E  V  H  H  I  *  T  L  Y  L  L  T  S  :  *  Y  S  V  L  Y  V  V  R  S  L  R  P  R  I  V  I  L  R  S  C  I  L  E  L  F  L  S  E  V  I  K  K  R  L  *  Q  Q  L  C  V  L  D  I  *  M  L  K  T  Y  *  *  H  S  *  L  S  S  N  F  *  L   </second_frame>
            <third_frame>   C  K  A  G  R  Y  R  E  R  E  A  D  P  F  L  Y  K  Q  D  T  C  S  V  Q  C  V  C  G  Q  C  I  D  Q  Y  V  C  K  M  W  T  S  S  *  G  N  S  N  I  *  *  H  A  *  E  E  F  G  F  L  E  G  D  D  C  C  L  C  *  K  R  E  L  W  R  G  I  E  A  H  V  S  Y  A  S  R  G  Y  *  G  G  *  L  Y  P  C  Y  C  S  H  S  M  W  R  I  *  G  N  Y  Q  V  Q  I  E  V  F  L  A  S  K  *  F  Y  N  L  N  R  Y  E  S  P  Q  E  A  S  A  K  Y  N  N  I  S  S  V  N  D  G  F  V  H  V  S  M  T  A  E  L  *  A  F  H  V  K  S  L  V  H  S  Y  V  I  G  L  L  L  D  H  D  G  H  V  *  *  P  L  P  R  L  I  K  N  E  V  Q  F  I  G  L  C  F  *  R  S  I  I  F  E  R  C  I  F  *  P  H :   D  T  L  Y  Y  T  *  L  G  P  Y  D  R  V  L  S  Y  *  D  H  V  Y  L  N  F  F  L  V  K  *  *  R  K  G  Y  N  N  N  Y  V  Y  *  I  F  E  C  *  K  H  T  S  N  I  H  D  C  L  Q  I  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13440" stop="13814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAKLEDIERGKLIHSSISKTPALSNVFVGSALINMYAKCGHLPEAIQIFDNMPEKNLVSWKAMIVAYAKNGNCGEALKLMYRMQVEGIEVDDYILATVLTACGEYKETIKSKSKYFLHPNSSIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30339" PGL_stop="35819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30339" e_stop="30467"/>
            <exon e_start="30551" e_stop="30614"/>
            <exon e_start="31508" e_stop="31616"/>
            <exon e_start="32744" e_stop="32806"/>
            <exon e_start="33366" e_stop="33463"/>
            <exon e_start="34483" e_stop="34549"/>
            <exon e_start="34672" e_stop="34724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.616" e_score="1.000"/>
          <exon-intron don_prob="0.298" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30339" e_stop="30467" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.970">
            <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30551" e_stop="30614" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31508" e_stop="31616" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.636" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32806" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.616">
            <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33366" e_stop="33463" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.298" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34483" e_stop="34549" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34672" e_stop="34724" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30339" stop="30467"/>
              <exon start="30551" stop="30614"/>
              <exon start="31508" stop="31616"/>
              <exon start="32744" stop="32806"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30339" stop="30467"/>
              <exon start="30551" stop="30614"/>
              <exon start="31508" stop="31616"/>
              <exon start="32744" stop="32806"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30370" stop="30467"/>
              <exon start="30551" stop="30614"/>
              <exon start="31508" stop="31616"/>
              <exon start="32744" stop="32806"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG : GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA : TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG : CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT : GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG : GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT : GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGC</gDNA_template>
            <first_frame> S  H  L  F  P  H  R  L  Q  H  L  F  S  L  S  L  I  H  *  Q  W  R  K  S  T  L  W  I  R  R  S  Y  W  K  Q  L  L  T  L  R  I  I  L  :  A  L  F  P  M  L  Q  L  K  T  F  L  I  D  F  L  F  Q  P  L  S   : M  L  C  K  Q  K  Q  I  T  L  A  *  K  V  L  W  L  I  V  *  R  S  F  S  K  Q  D  M  E  H  H  S  F  H  T  T  C :   H  L  L  L  S  V  S  V  Q  S  L  R  K  S  D  A  *  H  A  K  L :   Y  P  A  C  W  R  I  L  M  K  H  L  L  Y  N  *  F  M  S  M  E  F  I  N  F  C  L  I  A  S  *  V   : G  M  R  K  L  L  L  H  L  Q  M  Q  L  G  N  W  L  A  I  R  K  A  L :   I  S  Y  F  L  K  A  A  M  K  R  Q  T  S  *  T  S  </first_frame>
            <second_frame>  L  I  F  F  L  T  V  C  N  I  F  F  L  S  L  *  Y  T  N  N  G  G  R  V  L  C  G  S  G  A  V  T  G  S  S  Y  *  L  C  V  S  S  W :   R  S  F  R  C  F  S  S  R  L  S  *  S  I  S  S  S  S  H  Y  Q  :  C  F  A  N  K  S  R  L  P  W  P  R  K  C  F  G  *  L  F  R  E  A  F  Q  N  K  I  W  S  I  T  H  S  T  L  H   : A  I  C  Y  C  R  S  R  C  R  V  S  E  S  Q  T  L  S  M  P  N   : C  I  L  P  V  G  E  Y  *  *  S  T  C  Y  T  T  N  S  *  V  W  S  L  S  T  F  A  *  L  P  H  K  W  :  G  C  G  S  C  C  C  I  Y  R  C  N  *  E  T  G  *  P  F  E  R  H   : *  Y  H  I  S  *  K  R  Q  *  S  D  K  P  L  E  L  R </second_frame>
            <third_frame>   S  S  F  S  S  P  S  A  T  S  F  F  S  L  S  D  T  L  T  M  A  E  E  Y  S  V  D  P  A  Q  L  L  E  A  A  T  D  F  A  Y  H  P   : G  A  L  S  D  A  S  A  Q  D  F  L  N  R  F  P  L  P  A  I  I  N :   A  L  Q  T  K  A  D  Y  P  G  L  E  S  A  L  V  D  C  L  E  K  L  F  K  T  R  Y  G  A  S  L  I  P  H  Y  M  :  P  F  V  I  V  G  L  G  A  E  S  Q  K  V  R  R  L  A  C  Q  T  :  V  S  C  L  L  E  N  I  D  E  A  L  V  I  Q  L  I  H  E  Y  G  V  Y  Q  L  L  L  N  C  L  I  S  G :   D  A  E  V  A  A  A  S  T  D  A  I  R  K  L  A  S  H  S  K  G  I  :  D  I  I  F  P  E  S  G  N  E  A  T  N  L  L  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30341" stop="30467"/>
                    <exon start="30551" stop="30614"/>
                    <exon start="31508" stop="31616"/>
                    <exon start="32744" stop="32806"/>
                    <exon start="33366" stop="33463"/>
                    <exon start="34483" stop="34549"/>
                    <exon start="34672" stop="34722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFSSPSATSFFSLSDTLTMAEEYSVDPAQLLEAATDFAYHPGALSDASAQDFLNRFPLPAIINALQTKADYPGLESALVDCLEKLFKTRYGASLIPHYMPFVIVGLGAESQKVRRLACQTVSCLLENIDEALVIQLIHEYGVYQLLLNCLISGDAEVAAASTDAIRKLASHSKGIDIIFPESGNEATNLLNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31510" e_stop="31616"/>
            <exon e_start="33366" e_stop="33463"/>
            <exon e_start="34483" e_stop="34549"/>
            <exon e_start="34672" e_stop="34743"/>
            <exon e_start="35658" e_stop="35819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.636" acc_prob="0.616" e_score="1.000"/>
          <exon-intron don_prob="0.298" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.703" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31510" e_stop="31616" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.636" acc_prob="0.616">
            <gDNA_intron_boundary i_start="31617" i_stop="33365" i_length="1749"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33366" e_stop="33463" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.298" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34483" e_stop="34549" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34672" e_stop="34743" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.703">
            <gDNA_intron_boundary i_start="34744" i_stop="35657" i_length="914"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35658" e_stop="35819" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31510" stop="31616"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34743"/>
              <exon start="35658" stop="35819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG : GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG : GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT : GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTG : GGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG</gDNA_template>
            <first_frame> L  C  K  Q  K  Q  I  T  L  A  *  K  V  L  W  L  I  V  *  R  S  F  S  K  Q  D  M  E  H  H  S  F  H  T  T  W :   Y  P  A  C  W  R  I  L  M  K  H  L  L  Y  N  *  F  M  S  M  E  F  I  N  F  C  L  I  A  S  *  V   : G  M  R  K  L  L  L  H  L  Q  M  Q  L  G  N  W  L  A  I  R  K  A  L :   I  S  Y  F  L  K  A  A  M  K  R  Q  T  S  *  T  S  Q  P  T  V  H  L  W :   D  E  F  V  F  *  L  *  *  *  S  Y  S  P  F  P  L  L  W  H  Q  E  S  T  A  Q  I  F  L  A  C  W  R  Q  K  S  A  I  Q  M  I  H  *  S  L  R  A  A  W  N  S  Y  M   </first_frame>
            <second_frame>  F  A  N  K  S  R  L  P  W  P  R  K  C  F  G  *  L  F  R  E  A  F  Q  N  K  I  W  S  I  T  H  S  T  L  H   : G  I  L  P  V  G  E  Y  *  *  S  T  C  Y  T  T  N  S  *  V  W  S  L  S  T  F  A  *  L  P  H  K  W  :  G  C  G  S  C  C  C  I  Y  R  C  N  *  E  T  G  *  P  F  E  R  H   : *  Y  H  I  S  *  K  R  Q  *  S  D  K  P  L  E  L  R  N  Q  L  C  T  S   : G  T  S  S  C  F  S  F  D  S  E  V  I  L  H  F  H  F  C  G  I  K  S  L  Q  L  K  S  S  *  L  V  G  D  R  N  Q  Q  F  R  *  Y  I  S  H  F  E  Q  L  G  T  P  I  *  </second_frame>
            <third_frame>   L  Q  T  K  A  D  Y  P  G  L  E  S  A  L  V  D  C  L  E  K  L  F  K  T  R  Y  G  A  S  L  I  P  H  Y  M  :  V  S  C  L  L  E  N  I  D  E  A  L  V  I  Q  L  I  H  E  Y  G  V  Y  Q  L  L  L  N  C  L  I  S  G :   D  A  E  V  A  A  A  S  T  D  A  I  R  K  L  A  S  H  S  K  G  I  :  D  I  I  F  P  E  S  G  N  E  A  T  N  L  L  N  F  A  T  N  C  A  P  L  :  G  R  V  R  V  L  A  L  I  V  K  L  F  S  I  S  T  S  V  A  S  R  V  Y  S  S  N  L  L  S  L  L  E  T  E  I  S  N  S  D  D  T  L  V  T  S  S  S  L  E  L  L  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31512" stop="31616"/>
                    <exon start="33366" stop="33463"/>
                    <exon start="34483" stop="34549"/>
                    <exon start="34672" stop="34743"/>
                    <exon start="35658" stop="35819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQTKADYPGLESALVDCLEKLFKTRYGASLIPHYMVSCLLENIDEALVIQLIHEYGVYQLLLNCLISGDAEVAAASTDAIRKLASHSKGIDIIFPESGNEATNLLNFATNCAPLGRVRVLALIVKLFSISTSVASRVYSSNLLSLLETEISNSDDTLVTSSSLELLYE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38008" PGL_stop="38711"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38008" e_stop="38711"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38008" e_stop="38711" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38008" stop="38541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38065" stop="38711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTATTAGAAAATCAAAATGCAGATGAATGTGAATGTGCTCTTGAAGCGCTCGGACAAATTGGGTTGTGTAAGTTTTTATTTTTTTTATATTCATGTCCATGTGATATAGCTCAATTTCTCCTTGACAAGAGATACCTTGAACTACATTTATTTCGACAAAAACTTTAAATAGTTCAGGCAATTTTTATTTATAATTTCTTTAAATTAATGATCACACTTTGTACTTATGAGACCTCTGCTGATTTTTTGGTGACTCCGCTTAGAGTTTGAGCCCTACTCGCTTTTTAATTATCTGAACAAAGTGTGTGTACTGTAAGTGTGCATGACAATAGTAAGAGAGTATTGAACTGTCCTCAGGTGTTTCCCATTCTTTTGAGAAGGTAAAAGGCTTTTCATTGTTATCAAAACAGTACAAAGTATCAACTCCAAAAGAAGTGATAAAAAGAACAAAAAAAGATTAGACTAGGCTGACTAATATAGTCTCACTGTACATGAATAGTTTCAAAAGCCTCTAAAATGGTCTCACTTTGCCTATGTCTTCCATTTTACACTAAGAAGCAAACAAAAGCAAACAATTGAACTTGATCTTCCAGGTTGGGTTGGTTAATGCTTCAAAACATCTTTGATTCCTATCTCTCCAAATAGTCACCATGTACAATCCATGATTGTGGCCCATTTCTTCCTTAGATTTTGTTTTTAC</gDNA_template>
            <first_frame> Q  F  I  R  K  S  K  C  R  *  M  *  M  C  S  *  S  A  R  T  N  W  V  V  *  V  F  I  F  F  I  F  M  S  M  *  Y  S  S  I  S  P  *  Q  E  I  P  *  T  T  F  I  S  T  K  T  L  N  S  S  G  N  F  Y  L  *  F  L  *  I  N  D  H  T  L  Y  L  *  D  L  C  *  F  F  G  D  S  A  *  S  L  S  P  T  R  F  L  I  I  *  T  K  C  V  Y  C  K  C  A  *  Q  *  *  E  S  I  E  L  S  S  G  V  S  H  S  F  E  K  V  K  G  F  S  L  L  S  K  Q  Y  K  V  S  T  P  K  E  V  I  K  R  T  K  K  D  *  T  R  L  T  N  I  V  S  L  Y  M  N  S  F  K  S  L  *  N  G  L  T  L  P  M  S  S  I  L  H  *  E  A  N  K  S  K  Q  L  N  L  I  F  Q  V  G  L  V  N  A  S  K  H  L  *  F  L  S  L  Q  I  V  T  M  Y  N  P  *  L  W  P  I  S  S  L  D  F  V  F   </first_frame>
            <second_frame>  N  L  L  E  N  Q  N  A  D  E  C  E  C  A  L  E  A  L  G  Q  I  G  L  C  K  F  L  F  F  L  Y  S  C  P  C  D  I  A  Q  F  L  L  D  K  R  Y  L  E  L  H  L  F  R  Q  K  L  *  I  V  Q  A  I  F  I  Y  N  F  F  K  L  M  I  T  L  C  T  Y  E  T  S  A  D  F  L  V  T  P  L  R  V  *  A  L  L  A  F  *  L  S  E  Q  S  V  C  T  V  S  V  H  D  N  S  K  R  V  L  N  C  P  Q  V  F  P  I  L  L  R  R  *  K  A  F  H  C  Y  Q  N  S  T  K  Y  Q  L  Q  K  K  *  *  K  E  Q  K  K  I  R  L  G  *  L  I  *  S  H  C  T  *  I  V  S  K  A  S  K  M  V  S  L  C  L  C  L  P  F  Y  T  K  K  Q  T  K  A  N  N  *  T  *  S  S  R  L  G  W  L  M  L  Q  N  I  F  D  S  Y  L  S  K  *  S  P  C  T  I  H  D  C  G  P  F  L  P  *  I  L  F  L  </second_frame>
            <third_frame>   I  Y  *  K  I  K  M  Q  M  N  V  N  V  L  L  K  R  S  D  K  L  G  C  V  S  F  Y  F  F  Y  I  H  V  H  V  I  *  L  N  F  S  L  T  R  D  T  L  N  Y  I  Y  F  D  K  N  F  K  *  F  R  Q  F  L  F  I  I  S  L  N  *  *  S  H  F  V  L  M  R  P  L  L  I  F  W  *  L  R  L  E  F  E  P  Y  S  L  F  N  Y  L  N  K  V  C  V  L  *  V  C  M  T  I  V  R  E  Y  *  T  V  L  R  C  F  P  F  F  *  E  G  K  R  L  F  I  V  I  K  T  V  Q  S  I  N  S  K  R  S  D  K  K  N  K  K  R  L  D  *  A  D  *  Y  S  L  T  V  H  E  *  F  Q  K  P  L  K  W  S  H  F  A  Y  V  F  H  F  T  L  R  S  K  Q  K  Q  T  I  E  L  D  L  P  G  W  V  G  *  C  F  K  T  S  L  I  P  I  S  P  N  S  H  H  V  Q  S  M  I  V  A  H  F  F  L  R  F  C  F  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38844" PGL_stop="39977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38844" e_stop="39977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="38844" e_stop="39977" e_length="1134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38844" stop="39394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39237" stop="39490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39478" stop="39977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250738" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGATTTAAGCTCTGATGCTATAATCTCTTACATTCCCTATAGAGATCTTGAGCAGAATTCTGGTCTAAGTCAGTGTCTAAGAACTAAGCCATGGATTATCATGCCATGTGGAAGGACCTAACGACGTGAAGCTGTCGTTTACCATTATTGTGCATTATTTGTTGGTCTAGTGACGCTAGTCAAGCTATCTAGAAATTCTAGTTAATGGTACCGGCTATTACTTTTGGTACATCTGGTCAGACAGGAATCCTAGGTGATCTGATGGGATCTCAACTCCAAGTCAACCTGTAAAATCCAATTGTTTACTTAGTCTGTGTAACTGGCTAAATCTATACCTTTTTTGGATTGTGCCAGCTCGCCAGATATAGCTTAATGTTTTGTACATGAGTAGACTCAAATCTTTTTTTTGTTATTTTTGCTTAGTCATCTGCTTGATGCTATTAATGAAACCTTCTTACTCCATCAAAAAGAAAAGTTGTTGGCGTGATGACTCAGTGGGGAAATGCTTAATGGGCTAGAATGGTGTGTCATGATCTAGTGATGTACTAGCTCAAAGATCCATATGCTTTGGATAACCACTTGACGTGATGCTAATCCCGACTTCTGTGCATATTTTATCTTTCTGGACTGTTTTGTAGTATTACGGTTGCTTCATAACTATTCTCAAGTATTAATGTATTCAGGCTATGAAAAACCAGTACTTGGTTGCAGCTTTATAATCGTAGGGAATTGCCATTGGTGTTAATTGATTCTGCAACCATTCTTCTAGTGTTCAATCTACTAGATGTCATCGTTTATGCTGAGCTAATATTTAATCCTCTCATCAAATATTCTTTGATCTGTCCTCTTGTTCTTGATATGAATATGCTTCTCGAAGTACTGGTTCCTGCATTCATGAAGAAGTAAGTTTTTTGTTGCTCTTTTGACCGCCGTAATTTCTTTCTAGCACCGTGTAGTTCACTGTGACACATGCCACTTCAACATATTCACTTGGTTAAGAGAATACATCCTAATAAAAAAAAAATCTTGTCCTTGACATCTTGCAGCCAGCAAAGGTGCAGCATTGCTTCTCTCAGGTGCACAGCCTGCAGAAAGACATGTGATTTATGCAGCTTTTGATCAGCAACAGC</gDNA_template>
            <first_frame> R  K  I  *  A  L  M  L  *  S  L  T  F  P  I  E  I  L  S  R  I  L  V  *  V  S  V  *  E  L  S  H  G  L  S  C  H  V  E  G  P  N  D  V  K  L  S  F  T  I  I  V  H  Y  L  L  V  *  *  R  *  S  S  Y  L  E  I  L  V  N  G  T  G  Y  Y  F  W  Y  I  W  S  D  R  N  P  R  *  S  D  G  I  S  T  P  S  Q  P  V  K  S  N  C  L  L  S  L  C  N  W  L  N  L  Y  L  F  W  I  V  P  A  R  Q  I  *  L  N  V  L  Y  M  S  R  L  K  S  F  F  C  Y  F  C  L  V  I  C  L  M  L  L  M  K  P  S  Y  S  I  K  K  K  S  C  W  R  D  D  S  V  G  K  C  L  M  G  *  N  G  V  S  *  S  S  D  V  L  A  Q  R  S  I  C  F  G  *  P  L  D  V  M  L  I  P  T  S  V  H  I  L  S  F  W  T  V  L  *  Y  Y  G  C  F  I  T  I  L  K  Y  *  C  I  Q  A  M  K  N  Q  Y  L  V  A  A  L  *  S  *  G  I  A  I  G  V  N  *  F  C  N  H  S  S  S  V  Q  S  T  R  C  H  R  L  C  *  A  N  I  *  S  S  H  Q  I  F  F  D  L  S  S  C  S  *  Y  E  Y  A  S  R  S  T  G  S  C  I  H  E  E  V  S  F  L  L  L  F  *  P  P  *  F  L  S  S  T  V  *  F  T  V  T  H  A  T  S  T  Y  S  L  G  *  E  N  T  S  *  *  K  K  N  L  V  L  D  I  L  Q  P  A  K  V  Q  H  C  F  S  Q  V  H  S  L  Q  K  D  M  *  F  M  Q  L  L  I  S  N  S </first_frame>
            <second_frame>  E  R  F  K  L  *  C  Y  N  L  L  H  S  L  *  R  S  *  A  E  F  W  S  K  S  V  S  K  N  *  A  M  D  Y  H  A  M  W  K  D  L  T  T  *  S  C  R  L  P  L  L  C  I  I  C  W  S  S  D  A  S  Q  A  I  *  K  F  *  L  M  V  P  A  I  T  F  G  T  S  G  Q  T  G  I  L  G  D  L  M  G  S  Q  L  Q  V  N  L  *  N  P  I  V  Y  L  V  C  V  T  G  *  I  Y  T  F  F  G  L  C  Q  L  A  R  Y  S  L  M  F  C  T  *  V  D  S  N  L  F  F  V  I  F  A  *  S  S  A  *  C  Y  *  *  N  L  L  T  P  S  K  R  K  V  V  G  V  M  T  Q  W  G  N  A  *  W  A  R  M  V  C  H  D  L  V  M  Y  *  L  K  D  P  Y  A  L  D  N  H  L  T  *  C  *  S  R  L  L  C  I  F  Y  L  S  G  L  F  C  S  I  T  V  A  S  *  L  F  S  S  I  N  V  F  R  L  *  K  T  S  T  W  L  Q  L  Y  N  R  R  E  L  P  L  V  L  I  D  S  A  T  I  L  L  V  F  N  L  L  D  V  I  V  Y  A  E  L  I  F  N  P  L  I  K  Y  S  L  I  C  P  L  V  L  D  M  N  M  L  L  E  V  L  V  P  A  F  M  K  K  *  V  F  C  C  S  F  D  R  R  N  F  F  L  A  P  C  S  S  L  *  H  M  P  L  Q  H  I  H  L  V  K  R  I  H  P  N  K  K  K  I  L  S  L  T  S  C  S  Q  Q  R  C  S  I  A  S  L  R  C  T  A  C  R  K  T  C  D  L  C  S  F  *  S  A  T   </second_frame>
            <third_frame>   K  D  L  S  S  D  A  I  I  S  Y  I  P  Y  R  D  L  E  Q  N  S  G  L  S  Q  C  L  R  T  K  P  W  I  I  M  P  C  G  R  T  *  R  R  E  A  V  V  Y  H  Y  C  A  L  F  V  G  L  V  T  L  V  K  L  S  R  N  S  S  *  W  Y  R  L  L  L  L  V  H  L  V  R  Q  E  S  *  V  I  *  W  D  L  N  S  K  S  T  C  K  I  Q  L  F  T  *  S  V  *  L  A  K  S  I  P  F  L  D  C  A  S  S  P  D  I  A  *  C  F  V  H  E  *  T  Q  I  F  F  L  L  F  L  L  S  H  L  L  D  A  I  N  E  T  F  L  L  H  Q  K  E  K  L  L  A  *  *  L  S  G  E  M  L  N  G  L  E  W  C  V  M  I  *  *  C  T  S  S  K  I  H  M  L  W  I  T  T  *  R  D  A  N  P  D  F  C  A  Y  F  I  F  L  D  C  F  V  V  L  R  L  L  H  N  Y  S  Q  V  L  M  Y  S  G  Y  E  K  P  V  L  G  C  S  F  I  I  V  G  N  C  H  W  C  *  L  I  L  Q  P  F  F  *  C  S  I  Y  *  M  S  S  F  M  L  S  *  Y  L  I  L  S  S  N  I  L  *  S  V  L  L  F  L  I  *  I  C  F  S  K  Y  W  F  L  H  S  *  R  S  K  F  F  V  A  L  L  T  A  V  I  S  F  *  H  R  V  V  H  C  D  T  C  H  F  N  I  F  T  W  L  R  E  Y  I  L  I  K  K  K  S  C  P  *  H  L  A  A  S  K  G  A  A  L  L  L  S  G  A  Q  P  A  E  R  H  V  I  Y  A  A  F  D  Q  Q  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39538" stop="39753"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSTWLQLYNRRELPLVLIDSATILLVFNLLDVIVYAELIFNPLIKYSLICPLVLDMNMLLEVLVPAFMKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="45440" PGL_stop="49511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45440" e_stop="45636"/>
            <exon e_start="45831" e_stop="45997"/>
            <exon e_start="48252" e_stop="48691"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45440" e_stop="45636" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45831" e_stop="45997" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="0.962">
            <gDNA_exon_boundary e_start="48252" e_stop="48691" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45440" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45445" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45448" stop="45636"/>
              <exon start="45831" stop="45938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45448" stop="45636"/>
              <exon start="45831" stop="45938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45459" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45459" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45462" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45474" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45475" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45488" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45518" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45518" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45548" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45549" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45633" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284942" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45978" stop="45997"/>
              <exon start="48252" stop="48647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48258" stop="48648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48351" stop="48575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48419" stop="48665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCTTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG : GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT : GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTACTTTCATTTTGTTTCTTGAAAATAAT</gDNA_template>
            <first_frame> S  S  S  A  F  A  V  V  V  E  S  V  R  N  T  E  K  K  S  H  G  R  S  L  L  I  F  F  L  F  E  F  F  Y  K  I  Q  H  P  F  S  Q  W  T  T  C  *  C  I  *  V  T  Q  F  F  C  *  H  F  S  Q  S  V  L  *  R :   D  C  F  S  E  S  G  A  N  A  V  S  S  F  H  C  L  *  S  C  S  N  K  E  S  G  F  C  C  *  K  G  K  T  S  *  K  E  E  N  L  P  Q  G  *  K  I  *  S  Q  D  *  N  *  D   : C  F  G  S  I  G  D  I  E  E  E  N  *  C  R  V  R  G  S  C  F  S  *  E  V  D  C  R  G  I  F  C  N  R  *  S  S  *  S  W  N  T  S  Q  E  H  W  C  E  K  K  I  S  S  C  *  K  K  E  S  S  *  D  S  S  W  L  V  C  S  C  S  S  H  *  T  *  S  C  S  H  S  L  M  S  I  H  I  F  H  I  Q  C  K  A  V  T  S  C  G  E  F  N  F  L  E  Y  D  Q  I  F  F  I  L  D  I  V  Y  D  L  F  V  Q  S  I  S  T  S  L  L  F  L  Q  L  V  I  M  C  T  F  I  L  F  L  E  N  N </first_frame>
            <second_frame>  V  L  Q  L  L  L  L  L  *  R  V  *  E  I  Q  K  K  K  A  M  A  G  A  C  L  S  S  S  C  L  S  F  S  T  K  F  N  T  L  S  L  N  G  P  H  A  D  A  F  R  S  L  S  F  S  A  N  T  S  L  N  L  F  S  K   : G  T  V  S  V  N  P  V  Q  M  P  F  R  R  S  I  V  C  E  A  A  P  T  K  K  A  D  S  A  A  K  R  A  R  Q  A  E  K  R  R  I  Y  H  K  A  K  K  S  E  V  R  T  R  I  K  T  :  V  L  E  A  L  E  T  L  R  K  K  T  D  A  E  S  E  E  V  V  S  V  E  K  L  I  A  E  A  Y  S  A  I  D  K  A  V  K  V  G  T  L  H  R  N  T  G  A  R  R  K  S  R  L  A  R  R  K  K  A  V  E  I  H  H  G  W  Y  V  P  A  P  A  T  E  P  D  L  V  A  T  A  *  C  Q  S  I  F  F  I  F  N  V  K  Q  *  H  L  V  E  N  S  T  S  *  S  M  I  R  Y  F  S  F  L  I  L  Y  M  T  F  L  C  N  Q  F  L  L  L  F  C  F  F  S  *  *  L  C  V  L  S  F  C  F  L  K  I   </second_frame>
            <third_frame>   F  F  S  F  C  C  C  C  R  E  C  E  K  Y  R  K  K  K  P  W  Q  E  L  A  Y  L  L  L  V  *  V  F  L  Q  N  S  T  P  F  L  S  M  D  H  M  L  M  H  L  G  H  S  V  F  L  L  T  L  L  S  I  C  S  L  K  :  G  L  F  Q  *  I  R  C  K  C  R  F  V  V  P  L  F  V  K  L  L  Q  Q  R  K  R  I  L  L  L  K  G  Q  D  K  L  K  R  G  E  F  T  T  R  L  K  N  L  K  S  G  L  E  L  R  L :   F  W  K  H  W  R  H  *  G  R  K  L  M  Q  S  Q  R  K  L  F  Q  L  R  S  *  L  Q  R  H  I  L  Q  S  I  K  Q  L  K  L  E  H  F  T  G  T  L  V  R  E  E  N  L  V  L  L  E  E  R  K  Q  L  R  F  I  M  A  G  M  F  L  L  Q  P  L  N  L  I  L  *  P  Q  L  D  V  N  P  Y  F  S  Y  S  M  *  S  S  D  I  L  W  R  I  Q  L  P  R  V  *  S  D  I  F  H  S  *  Y  C  I  *  P  F  C  A  I  N  F  Y  F  S  F  V  S  S  V  S  N  Y  V  Y  F  H  F  V  S  *  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45477" stop="45636"/>
                    <exon start="45831" stop="45997"/>
                    <exon start="48252" stop="48500"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQKKKAMAGACLSSSCLSFSTKFNTLSLNGPHADAFRSLSFSANTSLNLFSKGTVSVNPVQMPFRRSIVCEAAPTKKADSAAKRARQAEKRRIYHKAKKSEVRTRIKTVLEALETLRKKTDAESEEVVSVEKLIAEAYSAIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYVPAPATEPDLVATA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48482" stop="48691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCSHSLMSIHIFHIQCKAVTSCGEFNFLEYDQIFFILDIVYDLFVQSISTSLLFLQLVIMCTFILFLENN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45440" e_stop="45636"/>
            <exon e_start="45831" e_stop="45997"/>
            <exon e_start="48252" e_stop="48652"/>
            <exon e_start="49485" e_stop="49511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45440" e_stop="45636" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45831" e_stop="45997" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48252" e_stop="48652" e_length="401"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48653" i_stop="49484" i_length="832"/>
          </intron>
          <exon e_serial="4" e_score="0.630">
            <gDNA_exon_boundary e_start="49485" e_stop="49511" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45440" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45445" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45448" stop="45636"/>
              <exon start="45831" stop="45938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45448" stop="45636"/>
              <exon start="45831" stop="45938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45452" stop="45636"/>
              <exon start="45831" stop="45835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45459" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45462" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45474" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45475" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45518" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45518" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45963" stop="45997"/>
              <exon start="48252" stop="48652"/>
              <exon start="49485" stop="49511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268198" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45978" stop="45997"/>
              <exon start="48252" stop="48647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48258" stop="48648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48351" stop="48575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTCTTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG : GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT : GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTA : AGAAATAAATAAAACATAATATAAACA</gDNA_template>
            <first_frame> S  S  S  A  F  A  V  V  V  E  S  V  R  N  T  E  K  K  S  H  G  R  S  L  L  I  F  F  L  F  E  F  F  Y  K  I  Q  H  P  F  S  Q  W  T  T  C  *  C  I  *  V  T  Q  F  F  C  *  H  F  S  Q  S  V  L  *  R :   D  C  F  S  E  S  G  A  N  A  V  S  S  F  H  C  L  *  S  C  S  N  K  E  S  G  F  C  C  *  K  G  K  T  S  *  K  E  E  N  L  P  Q  G  *  K  I  *  S  Q  D  *  N  *  D   : C  F  G  S  I  G  D  I  E  E  E  N  *  C  R  V  R  G  S  C  F  S  *  E  V  D  C  R  G  I  F  C  N  R  *  S  S  *  S  W  N  T  S  Q  E  H  W  C  E  K  K  I  S  S  C  *  K  K  E  S  S  *  D  S  S  W  L  V  C  S  C  S  S  H  *  T  *  S  C  S  H  S  L  M  S  I  H  I  F  H  I  Q  C  K  A  V  T  S  C  G  E  F  N  F  L  E  Y  D  Q  I  F  F  I  L  D  I  V  Y  D  L  F  V  Q  S  I  S  T  S  L  L  F  L  Q  L  :  R  N  K  *  N  I  I  *  T </first_frame>
            <second_frame>  V  L  Q  L  L  L  L  L  *  R  V  *  E  I  Q  K  K  K  A  M  A  G  A  C  L  S  S  S  C  L  S  F  S  T  K  F  N  T  L  S  L  N  G  P  H  A  D  A  F  R  S  L  S  F  S  A  N  T  S  L  N  L  F  S  K   : G  T  V  S  V  N  P  V  Q  M  P  F  R  R  S  I  V  C  E  A  A  P  T  K  K  A  D  S  A  A  K  R  A  R  Q  A  E  K  R  R  I  Y  H  K  A  K  K  S  E  V  R  T  R  I  K  T  :  V  L  E  A  L  E  T  L  R  K  K  T  D  A  E  S  E  E  V  V  S  V  E  K  L  I  A  E  A  Y  S  A  I  D  K  A  V  K  V  G  T  L  H  R  N  T  G  A  R  R  K  S  R  L  A  R  R  K  K  A  V  E  I  H  H  G  W  Y  V  P  A  P  A  T  E  P  D  L  V  A  T  A  *  C  Q  S  I  F  F  I  F  N  V  K  Q  *  H  L  V  E  N  S  T  S  *  S  M  I  R  Y  F  S  F  L  I  L  Y  M  T  F  L  C  N  Q  F  L  L  L  F  C  F  F  S  * :   E  I  N  K  T  *  Y  K   </second_frame>
            <third_frame>   F  F  S  F  C  C  C  C  R  E  C  E  K  Y  R  K  K  K  P  W  Q  E  L  A  Y  L  L  L  V  *  V  F  L  Q  N  S  T  P  F  L  S  M  D  H  M  L  M  H  L  G  H  S  V  F  L  L  T  L  L  S  I  C  S  L  K  :  G  L  F  Q  *  I  R  C  K  C  R  F  V  V  P  L  F  V  K  L  L  Q  Q  R  K  R  I  L  L  L  K  G  Q  D  K  L  K  R  G  E  F  T  T  R  L  K  N  L  K  S  G  L  E  L  R  L :   F  W  K  H  W  R  H  *  G  R  K  L  M  Q  S  Q  R  K  L  F  Q  L  R  S  *  L  Q  R  H  I  L  Q  S  I  K  Q  L  K  L  E  H  F  T  G  T  L  V  R  E  E  N  L  V  L  L  E  E  R  K  Q  L  R  F  I  M  A  G  M  F  L  L  Q  P  L  N  L  I  L  *  P  Q  L  D  V  N  P  Y  F  S  Y  S  M  *  S  S  D  I  L  W  R  I  Q  L  P  R  V  *  S  D  I  F  H  S  *  Y  C  I  *  P  F  C  A  I  N  F  Y  F  S  F  V  S  S  V   : K  K  *  I  K  H  N  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45477" stop="45636"/>
                    <exon start="45831" stop="45997"/>
                    <exon start="48252" stop="48500"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQKKKAMAGACLSSSCLSFSTKFNTLSLNGPHADAFRSLSFSANTSLNLFSKGTVSVNPVQMPFRRSIVCEAAPTKKADSAAKRARQAEKRRIYHKAKKSEVRTRIKTVLEALETLRKKTDAESEEVVSVEKLIAEAYSAIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYVPAPATEPDLVATA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52512" PGL_stop="56868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52512" e_stop="52724"/>
            <exon e_start="54514" e_stop="54557"/>
            <exon e_start="56085" e_stop="56193"/>
            <exon e_start="56392" e_stop="56447"/>
            <exon e_start="56596" e_stop="56868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.699" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52512" e_stop="52724" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52725" i_stop="54513" i_length="1789"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54514" e_stop="54557" e_length="44"/>
          </exon>
          <intron i_serial="2" don_prob="0.934" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54558" i_stop="56084" i_length="1527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56085" e_stop="56193" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="56194" i_stop="56391" i_length="198"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56392" e_stop="56447" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.699">
            <gDNA_intron_boundary i_start="56448" i_stop="56595" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="56596" e_stop="56868" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52512" stop="52724"/>
              <exon start="54514" stop="54557"/>
              <exon start="56085" stop="56193"/>
              <exon start="56392" stop="56437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52546" stop="52724"/>
              <exon start="54514" stop="54557"/>
              <exon start="56085" stop="56193"/>
              <exon start="56392" stop="56447"/>
              <exon start="56596" stop="56839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52668" stop="52724"/>
              <exon start="54514" stop="54557"/>
              <exon start="56085" stop="56193"/>
              <exon start="56392" stop="56447"/>
              <exon start="56596" stop="56868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATGGGTTAAATTCTAAATCCTTAAACCCCCTCAATAAACCTTTGTTCTTTTCATCTTTAAGGGTTTCAGTTTTAGGGAATTGGAGCTGAGCTGCAGTTTGTGTGAAGTGAAAAATGGGGAGATTATTTTTGGTGGATCTTGAAGGTAAAACTTACAATTGCAAATTCTGCAAAACCCAACTTGGTCTGGCTGATGATCTTGTTTCAAAG : GCTTTTCATTGCCGCAGGGGAAAAGCATACCTGTTCAATAATGT : GGTAAATATAACTTTTGGACAGAGCGAGGAGAGGACGATGCTTTCTGGAACGCACACTGTGAACGATATATTTTGTTGTTGCTGTGGGCAGATTCTTGGCTGGAAATAT : GAGAGAGCCCATGAGAAAAGCCAGAAGTACAAAGAAGGGAAATTTGTCCTTGAAAG : AGGCAGGATCATTGATGGAGAAGTTGATTCCGAATTCTACATTGATACTCGAGCAAGCACAAGTGATGGTGAAGATACAATGTAAACAGTGGGAGCTTAGTGCATCGATTTGCAGATCACTTGTATCTTGTAGACTTAGCAAAAGAAAAGTTGTATCTTATCTGGAGTTCTCCTCAAGTTTGTGGATACAGAAACTAAGTTTCTGCAGAAGTGTTTTATAATCGATAAAGTAAATGTTTTAATTATCTTACATGTTTTTTGTGTTTCCTTTAT</gDNA_template>
            <first_frame> F  N  G  L  N  S  K  S  L  N  P  L  N  K  P  L  F  F  S  S  L  R  V  S  V  L  G  N  W  S  *  A  A  V  C  V  K  *  K  M  G  R  L  F  L  V  D  L  E  G  K  T  Y  N  C  K  F  C  K  T  Q  L  G  L  A  D  D  L  V  S  K  :  A  F  H  C  R  R  G  K  A  Y  L  F  N  N  V :   V  N  I  T  F  G  Q  S  E  E  R  T  M  L  S  G  T  H  T  V  N  D  I  F  C  C  C  C  G  Q  I  L  G  W  K  Y  :  E  R  A  H  E  K  S  Q  K  Y  K  E  G  K  F  V  L  E  R :   G  R  I  I  D  G  E  V  D  S  E  F  Y  I  D  T  R  A  S  T  S  D  G  E  D  T  M  *  T  V  G  A  *  C  I  D  L  Q  I  T  C  I  L  *  T  *  Q  K  K  S  C  I  L  S  G  V  L  L  K  F  V  D  T  E  T  K  F  L  Q  K  C  F  I  I  D  K  V  N  V  L  I  I  L  H  V  F  C  V  S  F   </first_frame>
            <second_frame>  S  M  G  *  I  L  N  P  *  T  P  S  I  N  L  C  S  F  H  L  *  G  F  Q  F  *  G  I  G  A  E  L  Q  F  V  *  S  E  K  W  G  D  Y  F  W  W  I  L  K  V  K  L  T  I  A  N  S  A  K  P  N  L  V  W  L  M  I  L  F  Q  R :   L  F  I  A  A  G  E  K  H  T  C  S  I  M   : W  *  I  *  L  L  D  R  A  R  R  G  R  C  F  L  E  R  T  L  *  T  I  Y  F  V  V  A  V  G  R  F  L  A  G  N  M :   R  E  P  M  R  K  A  R  S  T  K  K  G  N  L  S  L  K   : E  A  G  S  L  M  E  K  L  I  P  N  S  T  L  I  L  E  Q  A  Q  V  M  V  K  I  Q  C  K  Q  W  E  L  S  A  S  I  C  R  S  L  V  S  C  R  L  S  K  R  K  V  V  S  Y  L  E  F  S  S  S  L  W  I  Q  K  L  S  F  C  R  S  V  L  *  S  I  K  *  M  F  *  L  S  Y  M  F  F  V  F  P  L  </second_frame>
            <third_frame>   Q  W  V  K  F  *  I  L  K  P  P  Q  *  T  F  V  L  F  I  F  K  G  F  S  F  R  E  L  E  L  S  C  S  L  C  E  V  K  N  G  E  I  I  F  G  G  S  *  R  *  N  L  Q  L  Q  I  L  Q  N  P  T  W  S  G  *  *  S  C  F  K   : G  F  S  L  P  Q  G  K  S  I  P  V  Q  *  C  :  G  K  Y  N  F  W  T  E  R  G  E  D  D  A  F  W  N  A  H  C  E  R  Y  I  L  L  L  L  W  A  D  S  W  L  E  I   : *  E  S  P  *  E  K  P  E  V  Q  R  R  E  I  C  P  *  K  :  R  Q  D  H  *  W  R  S  *  F  R  I  L  H  *  Y  S  S  K  H  K  *  W  *  R  Y  N  V  N  S  G  S  L  V  H  R  F  A  D  H  L  Y  L  V  D  L  A  K  E  K  L  Y  L  I  W  S  S  P  Q  V  C  G  Y  R  N  *  V  S  A  E  V  F  Y  N  R  *  S  K  C  F  N  Y  L  T  C  F  L  C  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52626" stop="52724"/>
                    <exon start="54514" stop="54557"/>
                    <exon start="56085" stop="56193"/>
                    <exon start="56392" stop="56447"/>
                    <exon start="56596" stop="56680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGRLFLVDLEGKTYNCKFCKTQLGLADDLVSKAFHCRRGKAYLFNNVVNITFGQSEERTMLSGTHTVNDIFCCCCGQILGWKYERAHEKSQKYKEGKFVLERGRIIDGEVDSEFYIDTRASTSDGEDTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56147" stop="56193"/>
                    <exon start="56392" stop="56447"/>
                    <exon start="56596" stop="56816"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIYFVVAVGRFLAGNMREPMRKARSTKKGNLSLKEAGSLMEKLIPNSTLILEQAQVMVKIQCKQWELSASICRSLVSCRLSKRKVVSYLEFSSSLWIQKLSFCRSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="79598" PGL_stop="78073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79598" e_stop="78874"/>
            <exon e_start="78118" e_stop="78073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79598" e_stop="78874" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78873" i_stop="78119" i_length="755"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78118" e_stop="78073" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79598" stop="78874"/>
              <exon start="78118" stop="78073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555400" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAAATAGAAAATCTAGCTAAACTATGAACTATTTTGTTCAAACATCTCTAAATATACATAAAATCGACATGATCCAACAAGCTTGAGAGCTTCCAAACATCTTCACACGTCACTGCTATCTCTCATGAAGTGGTCACTCATTTCTGGATCTAATCAGCAACATTTTTCAGAGACAAATAAAATCTGCACTCTCTTCCATCCGTAACTCAATTAACCATTTTCCTAATGGTAATTTCAAATTCATGATGAGAAATGATGAAATCGTAAATTTGACACTTCTGAATTAACAAGAAACGCATTACATTTGCACTAAACTAATAAAAATTACGTATTTACTACCTATAAAAAAGGTGAGATTTTCACTTGTAGGATATTTAGCCATGTCAAATGAAAGATCGGGATTTAACATAGCTAGATCTAGTCATTCAACAAAAAAATAAAAAATAAAAGGGGAAAAATTGTACCTTGGTAATAAGTTGATCAGCACGGGCAAGTTTGGTTTTGCAGAATTTGCAATTGAAGGTTTTGCCTTCAAGATCCTGAAAAACTAATCGCCCCATTTTCACTTCACTCGGCCTCAATTTCCCCAAAATGAAACCCTTCTTAAAGAAGGGATGATACATAAATGTGTTTTTAATGTAGCTTAAGAAAATATTTATGCCCTTCACTTTTAATTATGTATAAATAGACACTTAAGCTTGTATAAATTAAACAAATAG : ATCCATTCGTCTTAGTATGGAAGACAAATTAAAAGATATATTTATA</gDNA_template>
            <first_frame> K  K  E  I  E  N  L  A  K  L  *  T  I  L  F  K  H  L  *  I  Y  I  K  S  T  *  S  N  K  L  E  S  F  Q  T  S  S  H  V  T  A  I  S  H  E  V  V  T  H  F  W  I  *  S  A  T  F  F  R  D  K  *  N  L  H  S  L  P  S  V  T  Q  L  T  I  F  L  M  V  I  S  N  S  *  *  E  M  M  K  S  *  I  *  H  F  *  I  N  K  K  R  I  T  F  A  L  N  *  *  K  L  R  I  Y  Y  L  *  K  R  *  D  F  H  L  *  D  I  *  P  C  Q  M  K  D  R  D  L  T  *  L  D  L  V  I  Q  Q  K  N  K  K  *  K  G  K  N  C  T  L  V  I  S  *  S  A  R  A  S  L  V  L  Q  N  L  Q  L  K  V  L  P  S  R  S  *  K  T  N  R  P  I  F  T  S  L  G  L  N  F  P  K  M  K  P  F  L  K  K  G  *  Y  I  N  V  F  L  M  *  L  K  K  I  F  M  P  F  T  F  N  Y  V  *  I  D  T  *  A  C  I  N  *  T  N  R :   S  I  R  L  S  M  E  D  K  L  K  D  I  F  I </first_frame>
            <second_frame>  K  K  K  *  K  I  *  L  N  Y  E  L  F  C  S  N  I  S  K  Y  T  *  N  R  H  D  P  T  S  L  R  A  S  K  H  L  H  T  S  L  L  S  L  M  K  W  S  L  I  S  G  S  N  Q  Q  H  F  S  E  T  N  K  I  C  T  L  F  H  P  *  L  N  *  P  F  S  *  W  *  F  Q  I  H  D  E  K  *  *  N  R  K  F  D  T  S  E  L  T  R  N  A  L  H  L  H  *  T  N  K  N  Y  V  F  T  T  Y  K  K  G  E  I  F  T  C  R  I  F  S  H  V  K  *  K  I  G  I  *  H  S  *  I  *  S  F  N  K  K  I  K  N  K  R  G  K  I  V  P  W  *  *  V  D  Q  H  G  Q  V  W  F  C  R  I  C  N  *  R  F  C  L  Q  D  P  E  K  L  I  A  P  F  S  L  H  S  A  S  I  S  P  K  *  N  P  S  *  R  R  D  D  T  *  M  C  F  *  C  S  L  R  K  Y  L  C  P  S  L  L  I  M  Y  K  *  T  L  K  L  V  *  I  K  Q  I   : D  P  F  V  L  V  W  K  T  N  *  K  I  Y  L   </second_frame>
            <third_frame>   K  R  N  R  K  S  S  *  T  M  N  Y  F  V  Q  T  S  L  N  I  H  K  I  D  M  I  Q  Q  A  *  E  L  P  N  I  F  T  R  H  C  Y  L  S  *  S  G  H  S  F  L  D  L  I  S  N  I  F  Q  R  Q  I  K  S  A  L  S  S  I  R  N  S  I  N  H  F  P  N  G  N  F  K  F  M  M  R  N  D  E  I  V  N  L  T  L  L  N  *  Q  E  T  H  Y  I  C  T  K  L  I  K  I  T  Y  L  L  P  I  K  K  V  R  F  S  L  V  G  Y  L  A  M  S  N  E  R  S  G  F  N  I  A  R  S  S  H  S  T  K  K  *  K  I  K  G  E  K  L  Y  L  G  N  K  L  I  S  T  G  K  F  G  F  A  E  F  A  I  E  G  F  A  F  K  I  L  K  N  *  S  P  H  F  H  F  T  R  P  Q  F  P  Q  N  E  T  L  L  K  E  G  M  I  H  K  C  V  F  N  V  A  *  E  N  I  Y  A  L  H  F  *  L  C  I  N  R  H  L  S  L  Y  K  L  N  K  *  :  I  H  S  S  *  Y  G  R  Q  I  K  R  Y  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="78513" PGL_stop="80191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78513" e_stop="78576"/>
            <exon e_start="79046" e_stop="79128"/>
            <exon e_start="79371" e_stop="79750"/>
            <exon e_start="79930" e_stop="79934"/>
            <exon e_start="80173" e_stop="80191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.082" e_score="1.000"/>
          <exon-intron don_prob="0.802" acc_prob="0.258" e_score="0.921"/>
          <exon-intron don_prob="0.957" acc_prob="0.695" e_score="0.400"/>
          <exon-only e_score="0.474"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78513" e_stop="78576" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78577" i_stop="79045" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79046" e_stop="79128" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.082">
            <gDNA_intron_boundary i_start="79129" i_stop="79370" i_length="242"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="79371" e_stop="79750" e_length="380"/>
          </exon>
          <intron i_serial="3" don_prob="0.802" acc_prob="0.258">
            <gDNA_intron_boundary i_start="79751" i_stop="79929" i_length="179"/>
          </intron>
          <exon e_serial="4" e_score="0.400">
            <gDNA_exon_boundary e_start="79930" e_stop="79934" e_length="5"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.695">
            <gDNA_intron_boundary i_start="79935" i_stop="80172" i_length="238"/>
          </intron>
          <exon e_serial="5" e_score="0.474">
            <gDNA_exon_boundary e_start="80173" e_stop="80191" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="78576"/>
              <exon start="79046" stop="79128"/>
              <exon start="79371" stop="79750"/>
              <exon start="79930" stop="79934"/>
              <exon start="80173" stop="80191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="78576"/>
              <exon start="79046" stop="79128"/>
              <exon start="79371" stop="79712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACTTACAATTGCAAATTCTGCGATGCCAAACTTGGTCACGTTGGTTCACTTGTTTCAAAG : TTTTTCAGGATCTTGAAGGCAAAACCTTCAATTGCAAATTCTGCAAAACCAAACTTGCCCGTGCTGATCAACTTATTACCAAG : GAAAATGGTTAATTGAGTTACGGATGGAAGAGAGTGCAGATTTTATTTGTCTCTGAAAAATGTTGCTGATTAGATCCAGAAATGAGTGACCACTTCATGAGAGATAGCAGTGACGTGTGAAGATGTTTGGAAGCTCTCAAGCTTGTTGGATCATGTCGATTTTATGTATATTTAGAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTCTATTTCTTTTTTGAAGGAGATCTCTTGGGAGAGGTTTTTCCCAAATTGGATTGTGCATGATGCTAAGGGTACATTGAATTTCGTAGTTTTTGATGCAATAATATGAAGTGTTAATTTTCGTTGAAAAAGTTCATGAATCTGACAAGTTTAATGTTGGTTGCCAA : GGAAG : GCAAAACTTACAATTGCAA</gDNA_template>
            <first_frame> Q  N  L  Q  L  Q  I  L  R  C  Q  T  W  S  R  W  F  T  C  F  K   : V  F  Q  D  L  E  G  K  T  F  N  C  K  F  C  K  T  K  L  A  R  A  D  Q  L  I  T  K  :  E  N  G  *  L  S  Y  G  W  K  R  V  Q  I  L  F  V  S  E  K  C  C  *  L  D  P  E  M  S  D  H  F  M  R  D  S  S  D  V  *  R  C  L  E  A  L  K  L  V  G  S  C  R  F  Y  V  Y  L  E  M  F  E  Q  N  S  S  *  F  S  *  I  F  Y  F  F  F  E  G  D  L  L  G  E  V  F  P  K  L  D  C  A  *  C  *  G  Y  I  E  F  R  S  F  *  C  N  N  M  K  C  *  F  S  L  K  K  F  M  N  L  T  S  L  M  L  V  A  K :   E   : G  K  T  Y  N  C   </first_frame>
            <second_frame>  K  T  Y  N  C  K  F  C  D  A  K  L  G  H  V  G  S  L  V  S  K  :  F  F  R  I  L  K  A  K  P  S  I  A  N  S  A  K  P  N  L  P  V  L  I  N  L  L  P  R :   K  M  V  N  *  V  T  D  G  R  E  C  R  F  Y  L  S  L  K  N  V  A  D  *  I  Q  K  *  V  T  T  S  *  E  I  A  V  T  C  E  D  V  W  K  L  S  S  L  L  D  H  V  D  F  M  Y  I  *  R  C  L  N  K  I  V  H  S  L  A  R  F  S  I  S  F  L  K  E  I  S  W  E  R  F  F  P  N  W  I  V  H  D  A  K  G  T  L  N  F  V  V  F  D  A  I  I  *  S  V  N  F  R  *  K  S  S  *  I  *  Q  V  *  C  W  L  P   : R  K  :  A  K  L  T  I  A  </second_frame>
            <third_frame>   K  L  T  I  A  N  S  A  M  P  N  L  V  T  L  V  H  L  F  Q  S :   F  S  G  S  *  R  Q  N  L  Q  L  Q  I  L  Q  N  Q  T  C  P  C  *  S  T  Y  Y  Q   : G  K  W  L  I  E  L  R  M  E  E  S  A  D  F  I  C  L  *  K  M  L  L  I  R  S  R  N  E  *  P  L  H  E  R  *  Q  *  R  V  K  M  F  G  S  S  Q  A  C  W  I  M  S  I  L  C  I  F  R  D  V  *  T  K  *  F  I  V  *  L  D  F  L  F  L  F  *  R  R  S  L  G  R  G  F  S  Q  I  G  L  C  M  M  L  R  V  H  *  I  S  *  F  L  M  Q  *  Y  E  V  L  I  F  V  E  K  V  H  E  S  D  K  F  N  V  G  C  Q  :  G  R :   Q  N  L  Q  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0066M15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="80354" PGL_stop="80928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80354" e_stop="80928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="80354" e_stop="80928" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80354" stop="80928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTGGTACATCCTGATCACTTTTTGGTACAAGTAAAAAATTTCACCTTTTGTATAGGTAGTAATGAGTTGTTTTATGTTGTTCAGTGCAAATGTAATGCTTTTCTTGTTAATTTAGAAGTTTCAAATTTTACGAATTTGTTTCGGTTTCAATTTTTTTTTACGAATTTCTCAATCCTCATCATGAATTTCAATTGACCATTAGGAAAATGGTTGATTGAGTTAGGGATGGTAGTGTGAAGATTGTATTTGACTCTAAAAAATTGTTGTTGAAATGATCCAGAAATGAGTGACTACTTCACTAAAGATAGAAGTGACGTGTGAAGACACTTGGAAGCTTTCAAGCATGTTGGATCATGTCGATTTTATGTATATTCATAGATGTTTGAACAAAATAGTTCATAGTTTAGCTAGATTTTTTATTTCTTTGTTGAAGCAGATCTCTTGGGAGAGGTTTTTTCCAAGTTGGATCCTGCATGATGCTAAGGGGTACATTTAAATTTTGTAGTCGTTGATGCAATAATACAGATTGTTTAGTTTCAGTGAAAAAGTTCATGAATCTGACGAGTTTTATG</gDNA_template>
            <first_frame> F  L  V  H  P  D  H  F  L  V  Q  V  K  N  F  T  F  C  I  G  S  N  E  L  F  Y  V  V  Q  C  K  C  N  A  F  L  V  N  L  E  V  S  N  F  T  N  L  F  R  F  Q  F  F  F  T  N  F  S  I  L  I  M  N  F  N  *  P  L  G  K  W  L  I  E  L  G  M  V  V  *  R  L  Y  L  T  L  K  N  C  C  *  N  D  P  E  M  S  D  Y  F  T  K  D  R  S  D  V  *  R  H  L  E  A  F  K  H  V  G  S  C  R  F  Y  V  Y  S  *  M  F  E  Q  N  S  S  *  F  S  *  I  F  Y  F  F  V  E  A  D  L  L  G  E  V  F  S  K  L  D  P  A  *  C  *  G  V  H  L  N  F  V  V  V  D  A  I  I  Q  I  V  *  F  Q  *  K  S  S  *  I  *  R  V  L   </first_frame>
            <second_frame>  F  W  Y  I  L  I  T  F  W  Y  K  *  K  I  S  P  F  V  *  V  V  M  S  C  F  M  L  F  S  A  N  V  M  L  F  L  L  I  *  K  F  Q  I  L  R  I  C  F  G  F  N  F  F  L  R  I  S  Q  S  S  S  *  I  S  I  D  H  *  E  N  G  *  L  S  *  G  W  *  C  E  D  C  I  *  L  *  K  I  V  V  E  M  I  Q  K  *  V  T  T  S  L  K  I  E  V  T  C  E  D  T  W  K  L  S  S  M  L  D  H  V  D  F  M  Y  I  H  R  C  L  N  K  I  V  H  S  L  A  R  F  F  I  S  L  L  K  Q  I  S  W  E  R  F  F  P  S  W  I  L  H  D  A  K  G  Y  I  *  I  L  *  S  L  M  Q  *  Y  R  L  F  S  F  S  E  K  V  H  E  S  D  E  F  Y  </second_frame>
            <third_frame>   F  G  T  S  *  S  L  F  G  T  S  K  K  F  H  L  L  Y  R  *  *  *  V  V  L  C  C  S  V  Q  M  *  C  F  S  C  *  F  R  S  F  K  F  Y  E  F  V  S  V  S  I  F  F  Y  E  F  L  N  P  H  H  E  F  Q  L  T  I  R  K  M  V  D  *  V  R  D  G  S  V  K  I  V  F  D  S  K  K  L  L  L  K  *  S  R  N  E  *  L  L  H  *  R  *  K  *  R  V  K  T  L  G  S  F  Q  A  C  W  I  M  S  I  L  C  I  F  I  D  V  *  T  K  *  F  I  V  *  L  D  F  L  F  L  C  *  S  R  S  L  G  R  G  F  F  Q  V  G  S  C  M  M  L  R  G  T  F  K  F  C  S  R  *  C  N  N  T  D  C  L  V  S  V  K  K  F  M  N  L  T  S  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80643" stop="80852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTTSLKIEVTCEDTWKLSSMLDHVDFMYIHRCLNKIVHSLARFFISLLKQISWERFFPSWILHDAKGYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80354" stop="80551"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLVHPDHFLVQVKNFTFCIGSNELFYVVQCKCNAFLVNLEVSNFTNLFRFQFFFTNFSILIMNFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84717" PGL_stop="89228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84717" e_stop="85023"/>
            <exon e_start="86467" e_stop="87068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="84717" e_stop="85023" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85024" i_stop="86466" i_length="1443"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86467" e_stop="87068" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84717" stop="85023"/>
              <exon start="86467" stop="86886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84818" stop="85023"/>
              <exon start="86467" stop="86749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86578" stop="87068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCAGGTGCAGTTTGCTACGATAATGGATGCTATATATCTATGGGGTTGAGTGTGTTGGGCACCTTCCAGATCCTTTCACCATACCAAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAG : ATACGGAAGAGAAAAAGCAGAAGAAACAAATCCAAGAAGTTGTCCAGTTCTGAGGATGACTCATCATCTTCTGCTTCCTCTGATTATTCTAGCAGTTCACAGTCTTTGTCCTCCAATTCAGAGGTTGATTATAGTAGGAAAAGGCGTAGGCACTCACGTGATATGAAACGCGTGAAGAAAAGAACTTGGAGAAGATCCTCTAGCCAAGATGTGAGTGAGGGTTCACCCCCTGTAAAGAAAAGAAAAAGGTCAAATAGAAAGAGTCTTGATTATGGGAGAAAAGTGCAGAAGAAAAAGCGAAAGAGACACGCTAGTATTAGCTCCACGAACAGTGACTCAAGAAGTTGTTCTAGTTGTCAACGTGAAAACAGTGTTAGCTCCAGAGGTAGAGATTTTAAGAGCTTTTCCACTTGCCGTGATGAAAATAATAGTGTTAATAAGGACACCAATCTTCAGATTCCCAGGATTAAGTCTAGAAAAAAGATGAAAGAAAAGAAAATCCACAATGAGCCAAGCACTGGCAGAAGGAGCAGAAGTTGGGGGCCAGTTTGTTCTTTATGTGACCATCATTCATGTTCTTGCAATACTACTCATAATGGGGA</gDNA_template>
            <first_frame> K  A  G  A  V  C  Y  D  N  G  C  Y  I  S  M  G  L  S  V  L  G  T  F  Q  I  L  S  P  Y  Q  T  K  L  L  S  F  F  Q  I  L  I  H  N  L  Q  I  F  R  Y  *  S  Q  L  S  I  R  S  S  A  V  C  F  L  L  F  Q  F  C  *  Q  R  R  R  R  S  K  S  E  H  N  G  R  T  Q  V  F  I  *  E  K  I  F  Q  K  E  E  T  Q  S  F  F  *   : D  T  E  E  K  K  Q  K  K  Q  I  Q  E  V  V  Q  F  *  G  *  L  I  I  F  C  F  L  *  L  F  *  Q  F  T  V  F  V  L  Q  F  R  G  *  L  *  *  E  K  A  *  A  L  T  *  Y  E  T  R  E  E  K  N  L  E  K  I  L  *  P  R  C  E  *  G  F  T  P  C  K  E  K  K  K  V  K  *  K  E  S  *  L  W  E  K  S  A  E  E  K  A  K  E  T  R  *  Y  *  L  H  E  Q  *  L  K  K  L  F  *  L  S  T  *  K  Q  C  *  L  Q  R  *  R  F  *  E  L  F  H  L  P  *  *  K  *  *  C  *  *  G  H  Q  S  S  D  S  Q  D  *  V  *  K  K  D  E  R  K  E  N  P  Q  *  A  K  H  W  Q  K  E  Q  K  L  G  A  S  L  F  F  M  *  P  S  F  M  F  L  Q  Y  Y  S  *  W  G </first_frame>
            <second_frame>  K  Q  V  Q  F  A  T  I  M  D  A  I  Y  L  W  G  *  V  C  W  A  P  S  R  S  F  H  H  T  K  R  N  S  F  P  S  S  K  S  *  F  T  I  C  R  F  S  D  I  D  R  N  Y  R  F  V  H  L  R  F  A  F  C  Y  S  N  F  V  N  K  E  E  E  E  A  N  R  N  T  M  G  E  R  K  S  L  S  K  K  K  S  S  K  K  K  R  L  K  V  S  S  K  :  I  R  K  R  K  S  R  R  N  K  S  K  K  L  S  S  S  E  D  D  S  S  S  S  A  S  S  D  Y  S  S  S  S  Q  S  L  S  S  N  S  E  V  D  Y  S  R  K  R  R  R  H  S  R  D  M  K  R  V  K  K  R  T  W  R  R  S  S  S  Q  D  V  S  E  G  S  P  P  V  K  K  R  K  R  S  N  R  K  S  L  D  Y  G  R  K  V  Q  K  K  K  R  K  R  H  A  S  I  S  S  T  N  S  D  S  R  S  C  S  S  C  Q  R  E  N  S  V  S  S  R  G  R  D  F  K  S  F  S  T  C  R  D  E  N  N  S  V  N  K  D  T  N  L  Q  I  P  R  I  K  S  R  K  K  M  K  E  K  K  I  H  N  E  P  S  T  G  R  R  S  R  S  W  G  P  V  C  S  L  C  D  H  H  S  C  S  C  N  T  T  H  N  G   </second_frame>
            <third_frame>   S  R  C  S  L  L  R  *  W  M  L  Y  I  Y  G  V  E  C  V  G  H  L  P  D  P  F  T  I  P  N  E  T  P  F  L  L  P  N  P  N  S  Q  S  A  D  F  P  I  L  I  A  I  I  D  S  F  I  C  G  L  L  F  A  I  P  I  L  L  T  K  K  K  K  K  Q  I  G  T  Q  W  E  N  A  S  L  Y  L  R  K  N  L  P  K  R  R  D  S  K  F  L  L  R :   Y  G  R  E  K  A  E  E  T  N  P  R  S  C  P  V  L  R  M  T  H  H  L  L  L  P  L  I  I  L  A  V  H  S  L  C  P  P  I  Q  R  L  I  I  V  G  K  G  V  G  T  H  V  I  *  N  A  *  R  K  E  L  G  E  D  P  L  A  K  M  *  V  R  V  H  P  L  *  R  K  E  K  G  Q  I  E  R  V  L  I  M  G  E  K  C  R  R  K  S  E  R  D  T  L  V  L  A  P  R  T  V  T  Q  E  V  V  L  V  V  N  V  K  T  V  L  A  P  E  V  E  I  L  R  A  F  P  L  A  V  M  K  I  I  V  L  I  R  T  P  I  F  R  F  P  G  L  S  L  E  K  R  *  K  K  R  K  S  T  M  S  Q  A  L  A  E  G  A  E  V  G  G  Q  F  V  L  Y  V  T  I  I  H  V  L  A  I  L  L  I  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84838" stop="85023"/>
                    <exon start="86467" stop="87066"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTICRFSDIDRNYRFVHLRFAFCYSNFVNKEEEEANRNTMGERKSLSKKKSSKKKRLKVSSKIRKRKSRRNKSKKLSSSEDDSSSSASSDYSSSSQSLSSNSEVDYSRKRRRHSRDMKRVKKRTWRRSSSQDVSEGSPPVKKRKRSNRKSLDYGRKVQKKKRKRHASISSTNSDSRSCSSCQRENSVSSRGRDFKSFSTCRDENNSVNKDTNLQIPRIKSRKKMKEKKIHNEPSTGRRSRSWGPVCSLCDHHSCSCNTTHNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87476" e_stop="88149"/>
            <exon e_start="88777" e_stop="89002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.930" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87476" e_stop="88149" e_length="674"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.930">
            <gDNA_intron_boundary i_start="88150" i_stop="88776" i_length="627"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88777" e_stop="89002" e_length="226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87476" stop="88149"/>
              <exon start="88777" stop="89002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTGCAGAAATTTCGTAAAGAGTTTCAAACAAATTTAAAATCTGGTGCCAAGGAAAAGAAGAATGGCAGTGATATTAATCAGTTATCCCCTCCAAAGACTGAAGTTGTACCATACAAGTCTCTGGAGCATGGGGAAAAAGATGGATTGGCTTTAAATCAAGATGTAAAATTTAGAAGCAAACTTGTAACTACTAAGGAATTTTCTCATTCCACAGAGATTGAGATAAATACTCCAGTCGAAAAGAATAATGGAAAAGGATCTGGTTGCTTTGAGCCGTGTGTTACACAACTTGCTGATAGATCAGCACTCTCACAGAGTCCAGAACAGGAGAACCATACCACTGAACCAGTTCTTAGCAATGAACCTGAACCTGGTAAACTATTATGTAGTACCACAGTACAGACATATAAAAAGGAAAATTCATTGGCTTCCAAGAGAAACATAATTAAAACACCAGTTCCCTTGAGACCTGGAGTTCTTAGCACTGGGACCAGCGATAACTTAGACATGGAAGCTGTTAATGCCGGTATCCGTCCCACTTTAGAAACTTCTAGTGCCAGATCCACATCTGATGGACTTGCTTCAAAACACCAGCCTGATGAAACCAAGGATGCCTCTGAGTTTGAACAAAAGACCATGTCTGTAATGAGGGGCGGTGAGATGGTACAG : GTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTT</gDNA_template>
            <first_frame> R  T  C  R  N  F  V  K  S  F  K  Q  I  *  N  L  V  P  R  K  R  R  M  A  V  I  L  I  S  Y  P  L  Q  R  L  K  L  Y  H  T  S  L  W  S  M  G  K  K  M  D  W  L  *  I  K  M  *  N  L  E  A  N  L  *  L  L  R  N  F  L  I  P  Q  R  L  R  *  I  L  Q  S  K  R  I  M  E  K  D  L  V  A  L  S  R  V  L  H  N  L  L  I  D  Q  H  S  H  R  V  Q  N  R  R  T  I  P  L  N  Q  F  L  A  M  N  L  N  L  V  N  Y  Y  V  V  P  Q  Y  R  H  I  K  R  K  I  H  W  L  P  R  E  T  *  L  K  H  Q  F  P  *  D  L  E  F  L  A  L  G  P  A  I  T  *  T  W  K  L  L  M  P  V  S  V  P  L  *  K  L  L  V  P  D  P  H  L  M  D  L  L  Q  N  T  S  L  M  K  P  R  M  P  L  S  L  N  K  R  P  C  L  *  *  G  A  V  R  W  Y  R :   *  T  T  R  S  T  S  P  R  G  L  L  L  C  P  G  E  N  S  I  G  D  E  A  Q  L  N  F  H  A  N  L  I  S  F  V  D  Y  *  S  N  L  V  C  *  D  *  V  R  T  *  V  L  V  G  *  I  Q  M  F  L  G  Q  T  T  M  *  M  L  V  Y  Q  K  T  F </first_frame>
            <second_frame>  E  L  A  E  I  S  *  R  V  S  N  K  F  K  I  W  C  Q  G  K  E  E  W  Q  *  Y  *  S  V  I  P  S  K  D  *  S  C  T  I  Q  V  S  G  A  W  G  K  R  W  I  G  F  K  S  R  C  K  I  *  K  Q  T  C  N  Y  *  G  I  F  S  F  H  R  D  *  D  K  Y  S  S  R  K  E  *  W  K  R  I  W  L  L  *  A  V  C  Y  T  T  C  *  *  I  S  T  L  T  E  S  R  T  G  E  P  Y  H  *  T  S  S  *  Q  *  T  *  T  W  *  T  I  M  *  Y  H  S  T  D  I  *  K  G  K  F  I  G  F  Q  E  K  H  N  *  N  T  S  S  L  E  T  W  S  S  *  H  W  D  Q  R  *  L  R  H  G  S  C  *  C  R  Y  P  S  H  F  R  N  F  *  C  Q  I  H  I  *  W  T  C  F  K  T  P  A  *  *  N  Q  G  C  L  *  V  *  T  K  D  H  V  C  N  E  G  R  *  D  G  T   : G  K  L  Q  G  L  H  P  Q  E  G  S  C  S  V  Q  E  K  T  Q  S  V  M  R  L  S  *  I  F  M  P  I  *  F  H  L  *  I  I  N  Q  I  W  C  A  E  T  E  S  G  L  R  C  *  L  A  E  F  R  C  S  W  D  K  L  R  C  E  C  L  C  I  K  K  H   </second_frame>
            <third_frame>   N  L  Q  K  F  R  K  E  F  Q  T  N  L  K  S  G  A  K  E  K  K  N  G  S  D  I  N  Q  L  S  P  P  K  T  E  V  V  P  Y  K  S  L  E  H  G  E  K  D  G  L  A  L  N  Q  D  V  K  F  R  S  K  L  V  T  T  K  E  F  S  H  S  T  E  I  E  I  N  T  P  V  E  K  N  N  G  K  G  S  G  C  F  E  P  C  V  T  Q  L  A  D  R  S  A  L  S  Q  S  P  E  Q  E  N  H  T  T  E  P  V  L  S  N  E  P  E  P  G  K  L  L  C  S  T  T  V  Q  T  Y  K  K  E  N  S  L  A  S  K  R  N  I  I  K  T  P  V  P  L  R  P  G  V  L  S  T  G  T  S  D  N  L  D  M  E  A  V  N  A  G  I  R  P  T  L  E  T  S  S  A  R  S  T  S  D  G  L  A  S  K  H  Q  P  D  E  T  K  D  A  S  E  F  E  Q  K  T  M  S  V  M  R  G  G  E  M  V  Q  :  V  N  Y  K  V  Y  I  P  K  R  A  P  A  L  S  R  R  K  L  N  R  *  *  G  S  V  K  F  S  C  Q  F  N  F  I  C  R  L  L  I  K  F  G  V  L  R  L  S  Q  D  L  G  A  S  W  L  N  S  D  V  P  G  T  N  Y  D  V  N  A  C  V  S  K  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87478" stop="88149"/>
                    <exon start="88777" stop="88842"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQKFRKEFQTNLKSGAKEKKNGSDINQLSPPKTEVVPYKSLEHGEKDGLALNQDVKFRSKLVTTKEFSHSTEIEINTPVEKNNGKGSGCFEPCVTQLADRSALSQSPEQENHTTEPVLSNEPEPGKLLCSTTVQTYKKENSLASKRNIIKTPVPLRPGVLSTGTSDNLDMEAVNAGIRPTLETSSARSTSDGLASKHQPDETKDASEFEQKTMSVMRGGEMVQVNYKVYIPKRAPALSRRKLNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="84805" e_stop="85023"/>
            <exon e_start="88777" e_stop="89228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84805" e_stop="85023" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.930">
            <gDNA_intron_boundary i_start="85024" i_stop="88776" i_length="3753"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="88777" e_stop="89228" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84805" stop="85023"/>
              <exon start="88777" stop="89228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGAAACTCCTTTCCTTCTTCCAAATCCTAATTCACAATCTGCAGATTTTCCGATATTGATCGCAATTATCGATTCGTTCATCTGCGGTTTGCTTTTTGCTATTCCAATTTTGTTAACAAAGAAGAAGAAGAAGCAAATCGGAACACAATGGGAGAACGCAAGTCTTTATCTAAGAAAAAATCTTCCAAAAAGAAGAGACTCAAAGTTTCTTCTAAG : GTAAACTACAAGGTCTACATCCCCAAGAGGGCTCCTGCTCTGTCCAGGAGAAAACTCAATCGGTGATGAGGCTCAGTTAAATTTTCATGCCAATTTAATTTCATTTGTAGATTATTAATCAAATTTGGTGTGCTGAGACTGAGTCAGGACTTAGGTGCTAGTTGGCTGAATTCAGATGTTCCTGGGACAAACTACGATGTGAATGCTTGTGTATCAAAAAACATTTTCCTGCCTGTGTAGCTATGAGCTCTTTTATCCTCAGAAGAAAGCCGTTACAGTGATCTTTAGCTATGTTTGTGTAGAATAGAAGAAAAGAACAAAATTAAGCATTTCACAATGAAGCTCTCGCATTTTCCTCATTCTGTGTCGTTCTTTTCTGGATGTAGTTAGTATTTTCCGTAGTTATTGAGAACAGAATTAAGAGGATATTATTGACCATTTGGCTGCAGTCT</gDNA_template>
            <first_frame> K  R  N  S  F  P  S  S  K  S  *  F  T  I  C  R  F  S  D  I  D  R  N  Y  R  F  V  H  L  R  F  A  F  C  Y  S  N  F  V  N  K  E  E  E  E  A  N  R  N  T  M  G  E  R  K  S  L  S  K  K  K  S  S  K  K  K  R  L  K  V  S  S  K  :  V  N  Y  K  V  Y  I  P  K  R  A  P  A  L  S  R  R  K  L  N  R  *  *  G  S  V  K  F  S  C  Q  F  N  F  I  C  R  L  L  I  K  F  G  V  L  R  L  S  Q  D  L  G  A  S  W  L  N  S  D  V  P  G  T  N  Y  D  V  N  A  C  V  S  K  N  I  F  L  P  V  *  L  *  A  L  L  S  S  E  E  S  R  Y  S  D  L  *  L  C  L  C  R  I  E  E  K  N  K  I  K  H  F  T  M  K  L  S  H  F  P  H  S  V  S  F  F  S  G  C  S  *  Y  F  P  *  L  L  R  T  E  L  R  G  Y  Y  *  P  F  G  C  S   </first_frame>
            <second_frame>  N  E  T  P  F  L  L  P  N  P  N  S  Q  S  A  D  F  P  I  L  I  A  I  I  D  S  F  I  C  G  L  L  F  A  I  P  I  L  L  T  K  K  K  K  K  Q  I  G  T  Q  W  E  N  A  S  L  Y  L  R  K  N  L  P  K  R  R  D  S  K  F  L  L  R :   *  T  T  R  S  T  S  P  R  G  L  L  L  C  P  G  E  N  S  I  G  D  E  A  Q  L  N  F  H  A  N  L  I  S  F  V  D  Y  *  S  N  L  V  C  *  D  *  V  R  T  *  V  L  V  G  *  I  Q  M  F  L  G  Q  T  T  M  *  M  L  V  Y  Q  K  T  F  S  C  L  C  S  Y  E  L  F  Y  P  Q  K  K  A  V  T  V  I  F  S  Y  V  C  V  E  *  K  K  R  T  K  L  S  I  S  Q  *  S  S  R  I  F  L  I  L  C  R  S  F  L  D  V  V  S  I  F  R  S  Y  *  E  Q  N  *  E  D  I  I  D  H  L  A  A  V  </second_frame>
            <third_frame>   T  K  L  L  S  F  F  Q  I  L  I  H  N  L  Q  I  F  R  Y  *  S  Q  L  S  I  R  S  S  A  V  C  F  L  L  F  Q  F  C  *  Q  R  R  R  R  S  K  S  E  H  N  G  R  T  Q  V  F  I  *  E  K  I  F  Q  K  E  E  T  Q  S  F  F  *   : G  K  L  Q  G  L  H  P  Q  E  G  S  C  S  V  Q  E  K  T  Q  S  V  M  R  L  S  *  I  F  M  P  I  *  F  H  L  *  I  I  N  Q  I  W  C  A  E  T  E  S  G  L  R  C  *  L  A  E  F  R  C  S  W  D  K  L  R  C  E  C  L  C  I  K  K  H  F  P  A  C  V  A  M  S  S  F  I  L  R  R  K  P  L  Q  *  S  L  A  M  F  V  *  N  R  R  K  E  Q  N  *  A  F  H  N  E  A  L  A  F  S  S  F  C  V  V  L  F  W  M  *  L  V  F  S  V  V  I  E  N  R  I  K  R  I  L  L  T  I  W  L  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84838" stop="85023"/>
                    <exon start="88777" stop="88842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTICRFSDIDRNYRFVHLRFAFCYSNFVNKEEEEANRNTMGERKSLSKKKSSKKKRLKVSSKVNYKVYIPKRAPALSRRKLNR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84806" stop="85023"/>
                    <exon start="88777" stop="88780"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NETPFLLPNPNSQSADFPILIAIIDSFICGLLFAIPILLTKKKKKQIGTQWENASLYLRKNLPKRRDSKFLLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="94703" PGL_stop="89555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94703" e_stop="94342"/>
            <exon e_start="93830" e_stop="93756"/>
            <exon e_start="93435" e_stop="93295"/>
            <exon e_start="92521" e_stop="92456"/>
            <exon e_start="92179" e_stop="92012"/>
            <exon e_start="91047" e_stop="90721"/>
            <exon e_start="90053" e_stop="89555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.925" e_score="0.997"/>
          <exon-intron don_prob="0.964" acc_prob="0.264" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.838" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="94703" e_stop="94342" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.925">
            <gDNA_intron_boundary i_start="94341" i_stop="93831" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93830" e_stop="93756" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.264">
            <gDNA_intron_boundary i_start="93755" i_stop="93436" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93435" e_stop="93295" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="93294" i_stop="92522" i_length="773"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92521" e_stop="92456" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="92455" i_stop="92180" i_length="276"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92179" e_stop="92012" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.838" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92011" i_stop="91048" i_length="964"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91047" e_stop="90721" e_length="327"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="90720" i_stop="90054" i_length="667"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="90053" e_stop="89555" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94703" stop="94342"/>
              <exon start="93830" stop="93756"/>
              <exon start="93435" stop="93295"/>
              <exon start="92521" stop="92456"/>
              <exon start="92179" stop="92012"/>
              <exon start="91047" stop="90721"/>
              <exon start="90053" stop="89555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAGTTTCCTTGAAGTATATAAGCATACTAAAATAGTATATGGCGCAAAAGTAACAGAGCTAAATTTTCATCCCATGACAATGGTATTAAATTCTCTTCGCGGTCATTTCTTCAAAAACCTTTCGTGCACTACCAGTAGTATAATCACCGGCCGTTTCTTCAACGGCCGCCGCGTTCACCGGCTAATTCCGTTCATTCATTTATCTAAATCCTGTGCTGCGCAAAGATACAAGCATTGGAAGCGCATCCAGACTGCAGCTAAATTTTCCACGTTATCTTCTCCTTCTTCGGAGACTCCGGCTAGTGATTCATTCACTTCTCCATACCTCTCTGTTCGCATATGCTGCCAAAAGGATGTTGCC : GATATGCTCTCAGAGGCTCTTTTATGTTTTGGAGCCAGTTCAACTACTGTGGATGAAGAAGAAAGAAGTGATGAG : ATTATCATTACTTCCATCTTTTCTGTATGCAAAGATGTGAAAGACTGCATTTCACTTGCTGCTGATTCTATAGGGTTGCAAAAGATACCTAGTTTTGAGGTTACGATGCATGACCACACTGATTGGATAAAAGCTACACAG : GAATTGTTTTGTCCAGTGGAAGTTACTGATGGACTCTGGGTGGTGCCTGAATGGACAACTCCTCCA : GATCCTCAAGCAACAAATATAATCCTAAATCCTGGTTTGGCATTTGGAACTGGGGAGCACCCAACAACTAAGTTGTGTCTCCTGCTATTGCGTGATTTGATAAAAGGAGGAGAATTCTTCTTGGACTATGGAACTGGTTCGGGTGTGCTAGCAATTGCAGCTCTTAAG : TTTGGTGCAGCTTTTTCAGTTGGTTTTGATATAGATCCCCAGGCAATCACATCTGCTCAATATAATGCTACTTTAAACAACATTGGACATGAAGAATTGCTTTTAAAACTTGTTCCTGGCAAAGGAATTCTTCCCTCTGCAGATTTTAGTTCAAGTATGGACATTGATCAAACTGCCTATGATGCAGAAGTTCTAAATAACAGGGGAAAATATGACATCGTTGTGGCAAACATATTATTGAATCCTCTGCTTGAGTTGGCAGATGAGATTGTGTCCTATGCAAAGCCTGGTGCTACAGTTGCTCTTTCCGGGATCATATCTGAGCAG : ATTCCTCGCATACTAGAAAGGTATTCACAATACCTAGAGAACATTACAGTTACAAAGATGGATGACTGGGCTTGCATAAGTGGCTTAAAGAAATGACATAACAGCAGCTAAAGGACAACGAATGTTTTCTAATGTTGTGGAACTTAAGATTCTACAAAACTACGGGAGTCAGATGTAGATCGAGCCCTGGAAGTCCTCTCCTCAGCCCTCGCAGCTCCCTGCGTGAACTTTGCAAGTCATTTGACTTTCTATGTGCATGGCCAATTATTCACCTCTGTATTATTCAGCCCTGGAAACAGTTGTAAAAAAGCCACCTACCTACTTCACTAATTGCTAGTTGAAGTCATACTTACTGAAGGTTGTGTGAAAAGAGACTGCCTCAAGTCCCCAACTTTATCAGTTATCTAGTTTATAAATGGCTCTGTAAACGATATCTTCAGAAGCTATGAAGTCTATTGAAAACAGCTTCTACCTCCCATTGTGTAGGGGTAAAGTTTGT</gDNA_template>
            <first_frame> *  V  S  L  K  Y  I  S  I  L  K  *  Y  M  A  Q  K  *  Q  S  *  I  F  I  P  *  Q  W  Y  *  I  L  F  A  V  I  S  S  K  T  F  R  A  L  P  V  V  *  S  P  A  V  S  S  T  A  A  A  F  T  G  *  F  R  S  F  I  Y  L  N  P  V  L  R  K  D  T  S  I  G  S  A  S  R  L  Q  L  N  F  P  R  Y  L  L  L  L  R  R  L  R  L  V  I  H  S  L  L  H  T  S  L  F  A  Y  A  A  K  R  M  L  P :   I  C  S  Q  R  L  F  Y  V  L  E  P  V  Q  L  L  W  M  K  K  K  E  V  M  R :   L  S  L  L  P  S  F  L  Y  A  K  M  *  K  T  A  F  H  L  L  L  I  L  *  G  C  K  R  Y  L  V  L  R  L  R  C  M  T  T  L  I  G  *  K  L  H  R :   N  C  F  V  Q  W  K  L  L  M  D  S  G  W  C  L  N  G  Q  L  L  Q :   I  L  K  Q  Q  I  *  S  *  I  L  V  W  H  L  E  L  G  S  T  Q  Q  L  S  C  V  S  C  Y  C  V  I  *  *  K  E  E  N  S  S  W  T  M  E  L  V  R  V  C  *  Q  L  Q  L  L  S :   L  V  Q  L  F  Q  L  V  L  I  *  I  P  R  Q  S  H  L  L  N  I  M  L  L  *  T  T  L  D  M  K  N  C  F  *  N  L  F  L  A  K  E  F  F  P  L  Q  I  L  V  Q  V  W  T  L  I  K  L  P  M  M  Q  K  F  *  I  T  G  E  N  M  T  S  L  W  Q  T  Y  Y  *  I  L  C  L  S  W  Q  M  R  L  C  P  M  Q  S  L  V  L  Q  L  L  F  P  G  S  Y  L  S  R :   F  L  A  Y  *  K  G  I  H  N  T  *  R  T  L  Q  L  Q  R  W  M  T  G  L  A  *  V  A  *  R  N  D  I  T  A  A  K  G  Q  R  M  F  S  N  V  V  E  L  K  I  L  Q  N  Y  G  S  Q  M  *  I  E  P  W  K  S  S  P  Q  P  S  Q  L  P  A  *  T  L  Q  V  I  *  L  S  M  C  M  A  N  Y  S  P  L  Y  Y  S  A  L  E  T  V  V  K  K  P  P  T  Y  F  T  N  C  *  L  K  S  Y  L  L  K  V  V  *  K  E  T  A  S  S  P  Q  L  Y  Q  L  S  S  L  *  M  A  L  *  T  I  S  S  E  A  M  K  S  I  E  N  S  F  Y  L  P  L  C  R  G  K  V  C </first_frame>
            <second_frame>  E  F  P  *  S  I  *  A  Y  *  N  S  I  W  R  K  S  N  R  A  K  F  S  S  H  D  N  G  I  K  F  S  S  R  S  F  L  Q  K  P  F  V  H  Y  Q  *  Y  N  H  R  P  F  L  Q  R  P  P  R  S  P  A  N  S  V  H  S  F  I  *  I  L  C  C  A  K  I  Q  A  L  E  A  H  P  D  C  S  *  I  F  H  V  I  F  S  F  F  G  D  S  G  *  *  F  I  H  F  S  I  P  L  C  S  H  M  L  P  K  G  C  C   : R  Y  A  L  R  G  S  F  M  F  W  S  Q  F  N  Y  C  G  *  R  R  K  K  *  *   : D  Y  H  Y  F  H  L  F  C  M  Q  R  C  E  R  L  H  F  T  C  C  *  F  Y  R  V  A  K  D  T  *  F  *  G  Y  D  A  *  P  H  *  L  D  K  S  Y  T   : G  I  V  L  S  S  G  S  Y  *  W  T  L  G  G  A  *  M  D  N  S  S   : R  S  S  S  N  K  Y  N  P  K  S  W  F  G  I  W  N  W  G  A  P  N  N  *  V  V  S  P  A  I  A  *  F  D  K  R  R  R  I  L  L  G  L  W  N  W  F  G  C  A  S  N  C  S  S  *   : V  W  C  S  F  F  S  W  F  *  Y  R  S  P  G  N  H  I  C  S  I  *  C  Y  F  K  Q  H  W  T  *  R  I  A  F  K  T  C  S  W  Q  R  N  S  S  L  C  R  F  *  F  K  Y  G  H  *  S  N  C  L  *  C  R  S  S  K  *  Q  G  K  I  *  H  R  C  G  K  H  I  I  E  S  S  A  *  V  G  R  *  D  C  V  L  C  K  A  W  C  Y  S  C  S  F  R  D  H  I  *  A   : D  S  S  H  T  R  K  V  F  T  I  P  R  E  H  Y  S  Y  K  D  G  *  L  G  L  H  K  W  L  K  E  M  T  *  Q  Q  L  K  D  N  E  C  F  L  M  L  W  N  L  R  F  Y  K  T  T  G  V  R  C  R  S  S  P  G  S  P  L  L  S  P  R  S  S  L  R  E  L  C  K  S  F  D  F  L  C  A  W  P  I  I  H  L  C  I  I  Q  P  W  K  Q  L  *  K  S  H  L  P  T  S  L  I  A  S  *  S  H  T  Y  *  R  L  C  E  K  R  L  P  Q  V  P  N  F  I  S  Y  L  V  Y  K  W  L  C  K  R  Y  L  Q  K  L  *  S  L  L  K  T  A  S  T  S  H  C  V  G  V  K  F   </second_frame>
            <third_frame>   S  F  L  E  V  Y  K  H  T  K  I  V  Y  G  A  K  V  T  E  L  N  F  H  P  M  T  M  V  L  N  S  L  R  G  H  F  F  K  N  L  S  C  T  T  S  S  I  I  T  G  R  F  F  N  G  R  R  V  H  R  L  I  P  F  I  H  L  S  K  S  C  A  A  Q  R  Y  K  H  W  K  R  I  Q  T  A  A  K  F  S  T  L  S  S  P  S  S  E  T  P  A  S  D  S  F  T  S  P  Y  L  S  V  R  I  C  C  Q  K  D  V  A  :  D  M  L  S  E  A  L  L  C  F  G  A  S  S  T  T  V  D  E  E  E  R  S  D  E  :  I  I  I  T  S  I  F  S  V  C  K  D  V  K  D  C  I  S  L  A  A  D  S  I  G  L  Q  K  I  P  S  F  E  V  T  M  H  D  H  T  D  W  I  K  A  T  Q  :  E  L  F  C  P  V  E  V  T  D  G  L  W  V  V  P  E  W  T  T  P  P  :  D  P  Q  A  T  N  I  I  L  N  P  G  L  A  F  G  T  G  E  H  P  T  T  K  L  C  L  L  L  L  R  D  L  I  K  G  G  E  F  F  L  D  Y  G  T  G  S  G  V  L  A  I  A  A  L  K  :  F  G  A  A  F  S  V  G  F  D  I  D  P  Q  A  I  T  S  A  Q  Y  N  A  T  L  N  N  I  G  H  E  E  L  L  L  K  L  V  P  G  K  G  I  L  P  S  A  D  F  S  S  S  M  D  I  D  Q  T  A  Y  D  A  E  V  L  N  N  R  G  K  Y  D  I  V  V  A  N  I  L  L  N  P  L  L  E  L  A  D  E  I  V  S  Y  A  K  P  G  A  T  V  A  L  S  G  I  I  S  E  Q  :  I  P  R  I  L  E  R  Y  S  Q  Y  L  E  N  I  T  V  T  K  M  D  D  W  A  C  I  S  G  L  K  K  *  H  N  S  S  *  R  T  T  N  V  F  *  C  C  G  T  *  D  S  T  K  L  R  E  S  D  V  D  R  A  L  E  V  L  S  S  A  L  A  A  P  C  V  N  F  A  S  H  L  T  F  Y  V  H  G  Q  L  F  T  S  V  L  F  S  P  G  N  S  C  K  K  A  T  Y  L  L  H  *  L  L  V  E  V  I  L  T  E  G  C  V  K  R  D  C  L  K  S  P  T  L  S  V  I  *  F  I  N  G  S  V  N  D  I  F  R  S  Y  E  V  Y  *  K  Q  L  L  P  P  I  V  *  G  *  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94701" stop="94342"/>
                    <exon start="93830" stop="93756"/>
                    <exon start="93435" stop="93295"/>
                    <exon start="92521" stop="92456"/>
                    <exon start="92179" stop="92012"/>
                    <exon start="91047" stop="90721"/>
                    <exon start="90053" stop="89958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1230</number_coding_nucleotides>
                  <number_encoded_amino_acids>410</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLEVYKHTKIVYGAKVTELNFHPMTMVLNSLRGHFFKNLSCTTSSIITGRFFNGRRVHRLIPFIHLSKSCAAQRYKHWKRIQTAAKFSTLSSPSSETPASDSFTSPYLSVRICCQKDVADMLSEALLCFGASSTTVDEEERSDEIIITSIFSVCKDVKDCISLAADSIGLQKIPSFEVTMHDHTDWIKATQELFCPVEVTDGLWVVPEWTTPPDPQATNIILNPGLAFGTGEHPTTKLCLLLLRDLIKGGEFFLDYGTGSGVLAIAALKFGAAFSVGFDIDPQAITSAQYNATLNNIGHEELLLKLVPGKGILPSADFSSSMDIDQTAYDAEVLNNRGKYDIVVANILLNPLLELADEIVSYAKPGATVALSGIISEQIPRILERYSQYLENITVTKMDDWACISGLKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89952" stop="89749"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQLKDNECFLMLWNLRFYKTTGVRCRSSPGSPLLSPRSSLRELCKSFDFLCAWPIIHLCIIQPWKQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="100151" PGL_stop="95707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100151" e_stop="99920"/>
            <exon e_start="99276" e_stop="99172"/>
            <exon e_start="99073" e_stop="98906"/>
            <exon e_start="98412" e_stop="98285"/>
            <exon e_start="98195" e_stop="98057"/>
            <exon e_start="96835" e_stop="96711"/>
            <exon e_start="96616" e_stop="96443"/>
            <exon e_start="96097" e_stop="95707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.870" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.870" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.533" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="100151" e_stop="99920" e_length="232"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99919" i_stop="99277" i_length="643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99276" e_stop="99172" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.870" acc_prob="0.971">
            <gDNA_intron_boundary i_start="99171" i_stop="99074" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99073" e_stop="98906" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="98905" i_stop="98413" i_length="493"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98412" e_stop="98285" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.870" acc_prob="0.963">
            <gDNA_intron_boundary i_start="98284" i_stop="98196" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98195" e_stop="98057" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98056" i_stop="96836" i_length="1221"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="96835" e_stop="96711" e_length="125"/>
          </exon>
          <intron i_serial="6" don_prob="0.940" acc_prob="0.933">
            <gDNA_intron_boundary i_start="96710" i_stop="96617" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="96616" e_stop="96443" e_length="174"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.533">
            <gDNA_intron_boundary i_start="96442" i_stop="96098" i_length="345"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="96097" e_stop="95707" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100151" stop="99920"/>
              <exon start="99276" stop="99172"/>
              <exon start="99073" stop="98906"/>
              <exon start="98412" stop="98285"/>
              <exon start="98195" stop="98057"/>
              <exon start="96835" stop="96711"/>
              <exon start="96616" stop="96611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98376" stop="98285"/>
              <exon start="98195" stop="98057"/>
              <exon start="96835" stop="96711"/>
              <exon start="96616" stop="96443"/>
              <exon start="96097" stop="95883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98374" stop="98285"/>
              <exon start="98195" stop="98057"/>
              <exon start="96835" stop="96711"/>
              <exon start="96616" stop="96480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98177" stop="98057"/>
              <exon start="96835" stop="96711"/>
              <exon start="96616" stop="96443"/>
              <exon start="96097" stop="95707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCATTGGAGGATCATCTAGTACTGGAACTGTCCGAAGTGTGAAACCACCGCAGGTTAGAGATAGGAAACCAGAAGTTCCATTGAATCAACCTGCTTCAAGAAAAAATCTTGACAGTGCTAGCAATTGGTCCTCTGCTTCTGGAACTGTCCATTATACTTCATCAGAGGGTTTCAACCAAAAAGACGGCGGAGATGCAAACACCGAGAAAGGAGATTATTCTCATGAAGAT : GAGGAGTTGTCAGTGAGTGGTACTGGAACTGTGGTTGTGAGATCTCCAAGAGGATCTCCTAGAGGAATTCAATCCACTTCTCTATTCAGTGATCAGAGTTCCCTG : TCCAGTAGCACACTTGCTTCTTTTGAGGATGCTTCTTCCAGTGGCACTGTAGTTTATCGTGGACGTCATGATGACCCGGATTCTCCTCGAACGCCAAAATCTAGGTTAGGAATTCAAGAGAGATCTTCAAGTGCATCACTTGAAGACAGCTCAGCAAATCTTGCAGAG : GCCAAGGCAGCCATGCTAGCAGGACTGAAGAAGGAAAATGTTAGAGACAGATCAAAATTGGGCAAGGTGCAACGTGATGGGCTAGAAAATAAAACAGAACAACCGACAATGAGCTCTGATTCTTCTAG : GCACTCGCGTGATTATCTTGATGCACAGAAGGTGTTTTCGAGATCACGCCATACAAGTGATGAAGAAGATGGTGCGAGAACATATCCTATACCTTCATCTGCCACCTTATCTGTTCTCCTTATTCCTTCATTAAAAGAG : GCTGCTACCAGTGAAACAGATGGTTCACTCATGCAGGCGATGGTCAGTTCCTTTATGGATATGGAGCGTATGAAGGCTGGTTCTTGCGATCTGTTCATGACTAGGTTGCTTCAGCGACTAGCAAG : TGCAAAGGATCCGTCTTTGAAAGATCTGCAAGACCTGGCTGGTCGCATCTTTTCAAAGGGAAAGATTGAAACAGAGAGTACAACTACCGAGTCTGATAGCAAAAAAAAGCAGCAGAGTAAAGAGCTTAATTCAAATGCCAATTTGAGTCCACTGGCAAGGTTCTTGCTTTCAAG : ATGGCAAGGGCATGCTTCTCGAGATCAAAATTCCTAAACATTGAGGTTAGATTATTGTTTCAAAATTTTGCCTTCTCAAATCTTGTTTGTTCATGAATTATTTTGATTATGTGTACATATCATTTCGAGGACATCTGTAATTTCGTCCTCTGATTCAAATTTTTTGGGGTTTTTCCTAATTGAAGATTTTTCTTTTCTGCTTTTGCTTTGCAAATGTAATTTAAAGCTCTATTTTCTGTTAGAATTTACCCTTTGATTGGGCGCTTTTATTGCTCTATGTAATAGTAACAAGCTTTTTATGTTTTTATTGCTAACCTCGGTGTTGCAACTTCCGGAAGAATGTTGTAAAGTACACTTGACATATTGTTATTTAACTTGTTGATTTTTCCTT</gDNA_template>
            <first_frame> Q  H  W  R  I  I  *  Y  W  N  C  P  K  C  E  T  T  A  G  *  R  *  E  T  R  S  S  I  E  S  T  C  F  K  K  K  S  *  Q  C  *  Q  L  V  L  C  F  W  N  C  P  L  Y  F  I  R  G  F  Q  P  K  R  R  R  R  C  K  H  R  E  R  R  L  F  S  *  R   : *  G  V  V  S  E  W  Y  W  N  C  G  C  E  I  S  K  R  I  S  *  R  N  S  I  H  F  S  I  Q  *  S  E  F  P   : V  Q  *  H  T  C  F  F  *  G  C  F  F  Q  W  H  C  S  L  S  W  T  S  *  *  P  G  F  S  S  N  A  K  I  *  V  R  N  S  R  E  I  F  K  C  I  T  *  R  Q  L  S  K  S  C  R   : G  Q  G  S  H  A  S  R  T  E  E  G  K  C  *  R  Q  I  K  I  G  Q  G  A  T  *  W  A  R  K  *  N  R  T  T  D  N  E  L  *  F  F  *  :  A  L  A  *  L  S  *  C  T  E  G  V  F  E  I  T  P  Y  K  *  *  R  R  W  C  E  N  I  S  Y  T  F  I  C  H  L  I  C  S  P  Y  S  F  I  K  R   : G  C  Y  Q  *  N  R  W  F  T  H  A  G  D  G  Q  F  L  Y  G  Y  G  A  Y  E  G  W  F  L  R  S  V  H  D  *  V  A  S  A  T  S  K  :  C  K  G  S  V  F  E  R  S  A  R  P  G  W  S  H  L  F  K  G  K  D  *  N  R  E  Y  N  Y  R  V  *  *  Q  K  K  A  A  E  *  R  A  *  F  K  C  Q  F  E  S  T  G  K  V  L  A  F  K  :  M  A  R  A  C  F  S  R  S  K  F  L  N  I  E  V  R  L  L  F  Q  N  F  A  F  S  N  L  V  C  S  *  I  I  L  I  M  C  T  Y  H  F  E  D  I  C  N  F  V  L  *  F  K  F  F  G  V  F  P  N  *  R  F  F  F  S  A  F  A  L  Q  M  *  F  K  A  L  F  S  V  R  I  Y  P  L  I  G  R  F  Y  C  S  M  *  *  *  Q  A  F  Y  V  F  I  A  N  L  G  V  A  T  S  G  R  M  L  *  S  T  L  D  I  L  L  F  N  L  L  I  F  P  </first_frame>
            <second_frame>  S  I  G  G  S  S  S  T  G  T  V  R  S  V  K  P  P  Q  V  R  D  R  K  P  E  V  P  L  N  Q  P  A  S  R  K  N  L  D  S  A  S  N  W  S  S  A  S  G  T  V  H  Y  T  S  S  E  G  F  N  Q  K  D  G  G  D  A  N  T  E  K  G  D  Y  S  H  E  D  :  E  E  L  S  V  S  G  T  G  T  V  V  V  R  S  P  R  G  S  P  R  G  I  Q  S  T  S  L  F  S  D  Q  S  S  L  :  S  S  S  T  L  A  S  F  E  D  A  S  S  S  G  T  V  V  Y  R  G  R  H  D  D  P  D  S  P  R  T  P  K  S  R  L  G  I  Q  E  R  S  S  S  A  S  L  E  D  S  S  A  N  L  A  E  :  A  K  A  A  M  L  A  G  L  K  K  E  N  V  R  D  R  S  K  L  G  K  V  Q  R  D  G  L  E  N  K  T  E  Q  P  T  M  S  S  D  S  S  R :   H  S  R  D  Y  L  D  A  Q  K  V  F  S  R  S  R  H  T  S  D  E  E  D  G  A  R  T  Y  P  I  P  S  S  A  T  L  S  V  L  L  I  P  S  L  K  E  :  A  A  T  S  E  T  D  G  S  L  M  Q  A  M  V  S  S  F  M  D  M  E  R  M  K  A  G  S  C  D  L  F  M  T  R  L  L  Q  R  L  A  S :   A  K  D  P  S  L  K  D  L  Q  D  L  A  G  R  I  F  S  K  G  K  I  E  T  E  S  T  T  T  E  S  D  S  K  K  K  Q  Q  S  K  E  L  N  S  N  A  N  L  S  P  L  A  R  F  L  L  S  R :   W  Q  G  H  A  S  R  D  Q  N  S  *  T  L  R  L  D  Y  C  F  K  I  L  P  S  Q  I  L  F  V  H  E  L  F  *  L  C  V  H  I  I  S  R  T  S  V  I  S  S  S  D  S  N  F  L  G  F  F  L  I  E  D  F  S  F  L  L  L  L  C  K  C  N  L  K  L  Y  F  L  L  E  F  T  L  *  L  G  A  F  I  A  L  C  N  S  N  K  L  F  M  F  L  L  L  T  S  V  L  Q  L  P  E  E  C  C  K  V  H  L  T  Y  C  Y  L  T  C  *  F  F  L </second_frame>
            <third_frame>   A  L  E  D  H  L  V  L  E  L  S  E  V  *  N  H  R  R  L  E  I  G  N  Q  K  F  H  *  I  N  L  L  Q  E  K  I  L  T  V  L  A  I  G  P  L  L  L  E  L  S  I  I  L  H  Q  R  V  S  T  K  K  T  A  E  M  Q  T  P  R  K  E  I  I  L  M  K  M :   R  S  C  Q  *  V  V  L  E  L  W  L  *  D  L  Q  E  D  L  L  E  E  F  N  P  L  L  Y  S  V  I  R  V  P  C :   P  V  A  H  L  L  L  L  R  M  L  L  P  V  A  L  *  F  I  V  D  V  M  M  T  R  I  L  L  E  R  Q  N  L  G  *  E  F  K  R  D  L  Q  V  H  H  L  K  T  A  Q  Q  I  L  Q  R :   P  R  Q  P  C  *  Q  D  *  R  R  K  M  L  E  T  D  Q  N  W  A  R  C  N  V  M  G  *  K  I  K  Q  N  N  R  Q  *  A  L  I  L  L   : G  T  R  V  I  I  L  M  H  R  R  C  F  R  D  H  A  I  Q  V  M  K  K  M  V  R  E  H  I  L  Y  L  H  L  P  P  Y  L  F  S  L  F  L  H  *  K  R :   L  L  P  V  K  Q  M  V  H  S  C  R  R  W  S  V  P  L  W  I  W  S  V  *  R  L  V  L  A  I  C  S  *  L  G  C  F  S  D  *  Q   : V  Q  R  I  R  L  *  K  I  C  K  T  W  L  V  A  S  F  Q  R  E  R  L  K  Q  R  V  Q  L  P  S  L  I  A  K  K  S  S  R  V  K  S  L  I  Q  M  P  I  *  V  H  W  Q  G  S  C  F  Q   : D  G  K  G  M  L  L  E  I  K  I  P  K  H  *  G  *  I  I  V  S  K  F  C  L  L  K  S  C  L  F  M  N  Y  F  D  Y  V  Y  I  S  F  R  G  H  L  *  F  R  P  L  I  Q  I  F  W  G  F  S  *  L  K  I  F  L  F  C  F  C  F  A  N  V  I  *  S  S  I  F  C  *  N  L  P  F  D  W  A  L  L  L  L  Y  V  I  V  T  S  F  L  C  F  Y  C  *  P  R  C  C  N  F  R  K  N  V  V  K  Y  T  *  H  I  V  I  *  L  V  D  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100150" stop="99920"/>
                    <exon start="99276" stop="99172"/>
                    <exon start="99073" stop="98906"/>
                    <exon start="98412" stop="98285"/>
                    <exon start="98195" stop="98057"/>
                    <exon start="96835" stop="96711"/>
                    <exon start="96616" stop="96443"/>
                    <exon start="96097" stop="96061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1104</number_coding_nucleotides>
                  <number_encoded_amino_acids>368</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIGGSSSTGTVRSVKPPQVRDRKPEVPLNQPASRKNLDSASNWSSASGTVHYTSSEGFNQKDGGDANTEKGDYSHEDEELSVSGTGTVVVRSPRGSPRGIQSTSLFSDQSSLSSSTLASFEDASSSGTVVYRGRHDDPDSPRTPKSRLGIQERSSSASLEDSSANLAEAKAAMLAGLKKENVRDRSKLGKVQRDGLENKTEQPTMSSDSSRHSRDYLDAQKVFSRSRHTSDEEDGARTYPIPSSATLSVLLIPSLKEAATSETDGSLMQAMVSSFMDMERMKAGSCDLFMTRLLQRLASAKDPSLKDLQDLAGRIFSKGKIETESTTTESDSKKKQQSKELNSNANLSPLARFLLSRWQGHASRDQNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="110637" PGL_stop="106290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110637" e_stop="110299"/>
            <exon e_start="107612" e_stop="107556"/>
            <exon e_start="106506" e_stop="106479"/>
            <exon e_start="106386" e_stop="106290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.942" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.549" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="110637" e_stop="110299" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110298" i_stop="107613" i_length="2686"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107612" e_stop="107556" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.878">
            <gDNA_intron_boundary i_start="107555" i_stop="106507" i_length="1049"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106506" e_stop="106479" e_length="28"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.549">
            <gDNA_intron_boundary i_start="106478" i_stop="106387" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106386" e_stop="106290" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110637" stop="110299"/>
              <exon start="107612" stop="107556"/>
              <exon start="106506" stop="106479"/>
              <exon start="106386" stop="106290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATGTGTGTTTAATTGTTTGTAGTGTGAATTTTAAATTTTGTGTTATTATTGGTTAATTTAAGTAGTTAATGTTTTTTCAGATTGATTTTCCGTGCCAGAGAGTGAGATTGAGTGGCTACATTTTATGAATTTGTTGAACATTTACTAAGAGGAGTTGTTGAATGAGAAGTGCAAGCTAGGGGATGCTGGCTTCACTTCATCTACTGAGAGTGTGAAGGGATACAGGTAGTTGTGTATAAAAATGGCTGATGCAGCTGCTCTTATTGAAGCTTCAGGATCTAGATTTAGTGATCTGGAGCTCATTGGAAGAGGCTCATTTGGTGACGTCTATAAAGG : ATTTGACAAGGAATTAAACAAAGAAGTTGCGATCAAGGTTATTGATCTGGAAGAATC : AGAGGATGAAGTTGAGGATATCCAAAAG : GAAATTGCAGTTTTATCACAATGTCGATCTCCTTATATTACGGAGTACTATGGGTCATATCTGCACCAAACTAAGCTATGGATAATAATGGAATACA</gDNA_template>
            <first_frame> L  M  C  V  *  L  F  V  V  *  I  L  N  F  V  L  L  L  V  N  L  S  S  *  C  F  F  R  L  I  F  R  A  R  E  *  D  *  V  A  T  F  Y  E  F  V  E  H  L  L  R  G  V  V  E  *  E  V  Q  A  R  G  C  W  L  H  F  I  Y  *  E  C  E  G  I  Q  V  V  V  Y  K  N  G  *  C  S  C  S  Y  *  S  F  R  I  *  I  *  *  S  G  A  H  W  K  R  L  I  W  *  R  L  *  R  :  I  *  Q  G  I  K  Q  R  S  C  D  Q  G  Y  *  S  G  R  I  :  R  G  *  S  *  G  Y  P  K   : G  N  C  S  F  I  T  M  S  I  S  L  Y  Y  G  V  L  W  V  I  S  A  P  N  *  A  M  D  N  N  G  I   </first_frame>
            <second_frame>  *  C  V  F  N  C  L  *  C  E  F  *  I  L  C  Y  Y  W  L  I  *  V  V  N  V  F  S  D  *  F  S  V  P  E  S  E  I  E  W  L  H  F  M  N  L  L  N  I  Y  *  E  E  L  L  N  E  K  C  K  L  G  D  A  G  F  T  S  S  T  E  S  V  K  G  Y  R  *  L  C  I  K  M  A  D  A  A  A  L  I  E  A  S  G  S  R  F  S  D  L  E  L  I  G  R  G  S  F  G  D  V  Y  K  G :   F  D  K  E  L  N  K  E  V  A  I  K  V  I  D  L  E  E  S :   E  D  E  V  E  D  I  Q  K  :  E  I  A  V  L  S  Q  C  R  S  P  Y  I  T  E  Y  Y  G  S  Y  L  H  Q  T  K  L  W  I  I  M  E  Y  </second_frame>
            <third_frame>   D  V  C  L  I  V  C  S  V  N  F  K  F  C  V  I  I  G  *  F  K  *  L  M  F  F  Q  I  D  F  P  C  Q  R  V  R  L  S  G  Y  I  L  *  I  C  *  T  F  T  K  R  S  C  *  M  R  S  A  S  *  G  M  L  A  S  L  H  L  L  R  V  *  R  D  T  G  S  C  V  *  K  W  L  M  Q  L  L  L  L  K  L  Q  D  L  D  L  V  I  W  S  S  L  E  E  A  H  L  V  T  S  I  K   : D  L  T  R  N  *  T  K  K  L  R  S  R  L  L  I  W  K  N   : Q  R  M  K  L  R  I  S  K  R :   K  L  Q  F  Y  H  N  V  D  L  L  I  L  R  S  T  M  G  H  I  C  T  K  L  S  Y  G  *  *  W  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110405" stop="110299"/>
                    <exon start="107612" stop="107556"/>
                    <exon start="106506" stop="106479"/>
                    <exon start="106386" stop="106291"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCIKMADAAALIEASGSRFSDLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEVEDIQKEIAVLSQCRSPYITEYYGSYLHQTKLWIIMEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="122373" PGL_stop="126598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122373" e_stop="122716"/>
            <exon e_start="122796" e_stop="122846"/>
            <exon e_start="123548" e_stop="123676"/>
            <exon e_start="123860" e_stop="123965"/>
            <exon e_start="124080" e_stop="124121"/>
            <exon e_start="124414" e_stop="124470"/>
            <exon e_start="124688" e_stop="125616"/>
            <exon e_start="126578" e_stop="126598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.949" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.549" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="122373" e_stop="122716" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122717" i_stop="122795" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122796" e_stop="122846" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="1.000">
            <gDNA_intron_boundary i_start="122847" i_stop="123547" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123548" e_stop="123676" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123677" i_stop="123859" i_length="183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123860" e_stop="123965" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.549" acc_prob="0.989">
            <gDNA_intron_boundary i_start="123966" i_stop="124079" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124080" e_stop="124121" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124122" i_stop="124413" i_length="292"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124414" e_stop="124470" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.853">
            <gDNA_intron_boundary i_start="124471" i_stop="124687" i_length="217"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124688" e_stop="125616" e_length="929"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="125617" i_stop="126577" i_length="961"/>
          </intron>
          <exon e_serial="8" e_score="0.857">
            <gDNA_exon_boundary e_start="126578" e_stop="126598" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122373" stop="122716"/>
              <exon start="122796" stop="122846"/>
              <exon start="123548" stop="123676"/>
              <exon start="123860" stop="123965"/>
              <exon start="124080" stop="124121"/>
              <exon start="124414" stop="124470"/>
              <exon start="124688" stop="125616"/>
              <exon start="126578" stop="126598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123548" stop="123676"/>
              <exon start="123860" stop="123965"/>
              <exon start="124080" stop="124121"/>
              <exon start="124414" stop="124470"/>
              <exon start="124688" stop="124853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124753" stop="125179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124823" stop="125209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124827" stop="125182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368651" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAGAAAAAAGGGTCTCTATCTTTGTGGTTGATAAGCATTTGTATTGTATAGTTTTAGCTCAACAAGATAAAAAAAAAAAAAAAAAACAATAAAAATTGAATCTTTAAGAGAAATTTTTCTAGAGGAGTTTGAAGTTTGAGTGTTGAGAAGAGAAAAGGGGTTTAGTTTTTATTATTAAAGAGAGAAGTGGGAAAAAAAAGGGGAAAAAATGGTGGGCTCAGGAACAGCAGATAGAAGCAAAGAAGCAGTTGGGATGATGGCCCTTCATGAGGCACTAAGAAGCGTCTGTCTTAACACAGACTGGACTTATTCAGTGTTCTGGACCATTCGTCCTCGACC : GAGAGTTAGAGGTGGTAATGGTTGTAAAGTTGGAGATGACAATGGTAGCTT : GATGTTGATGTGGGAAGATGGATTCTGCAGAGGTAGAGGAACAGATTGCTTGGAAGAGATGGATGGTGAAGATCTTGTGAGAAAAGCCTTCAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGG : GTTGATGGGTAAAGTTGCATCTGATAAGTGTCATAAATGGGTTTTCAAGGAACCTACAGAATGTGAACCAAACATATCTAATTACTGGCAGAGTTCATTTGATGCT : CTCCCACCTGAGTGGACTGACCAGTTTGAGTCAGGGATTCAG : ACTATTGCTGTGATTCAAGCTGGACATGGCCTACTGCAACTGGGATCCTGCAAGATT : ATACCGGAAGACCTCCATTTCGTGTTAAGAATGAGGCACACGTTCGAGTCACTAGGCTATCAATCTGGCTTTTATTTGTCACAACTATTTTCTTCAACAAGGACTAGTTCACCTTCGTCTGCAATTCCTCTTAAGCAGCCGACCATGCCAATTCGCGCTCCTCCTCCACTTTTCAACTGGGGACCAAGGCCAATGCCTTCAGCGTCTTCGCTACTATCGTCTCCCAACTTCCAGAACTCCGCGAGACTTGGTATTCCACAGTCGAAAGATGAATCACATATGTTCCTTCAACTTCCTCATTCATCCGAACCACGAATGGAAGACATGATGGGAGCTGCTGCTGATCATGAGAGTGATATCAAGTGGCCTAATGGATTAACTTTCTTTAGTGCTCTCACTGGTAGAAATGATGATTCCAGGATCCTGTTCAATCCTGATAGCTTAGGTTCCAAACCGGATCATAATCAGCATCCGCTTAGTCTTGATGGGAAGACATCAAATCCGAACTCAGATGCTTCTAGCTTGCACAACAACGGAGGTGCTAATCCAAACGATTTCTTGAGCCTGGATAGCCACCCTGATAGCATTCGGAAGATGGACAAGTTCAAGAGAAGCTATACGCTTCCTGCTAGGATGGCTTCGTCTTCTAATTCATCGACTTCACTTGATCAGCACGCTAATAATCCCGGAGAATATAGGAATGAAGGAGGAATGTACCCTGATGTGATGGAGAGATTCTTGGAATGATCTTTCTAGGGTTATGGTTGGGAGAAGTTGTACTTAAGAAAAAGCTTTTAGTTGTGTTTTCTGCTTAATTTAGTGTTCTTTTAATAGTTTGATTTTCCTTCATCCTTTGGACCATTGAATGTTTCCACTTTTTTCTTGTAGTCTTTTTGATCAGTTTATCTAGAAATGAAGGAAAATTTATG : CTAAAAAAAAAAAAAAAACTA</gDNA_template>
            <first_frame> *  R  R  K  K  G  L  Y  L  C  G  *  *  A  F  V  L  Y  S  F  S  S  T  R  *  K  K  K  K  K  T  I  K  I  E  S  L  R  E  I  F  L  E  E  F  E  V  *  V  L  R  R  E  K  G  F  S  F  Y  Y  *  R  E  K  W  E  K  K  G  E  K  M  V  G  S  G  T  A  D  R  S  K  E  A  V  G  M  M  A  L  H  E  A  L  R  S  V  C  L  N  T  D  W  T  Y  S  V  F  W  T  I  R  P  R  P :   R  V  R  G  G  N  G  C  K  V  G  D  D  N  G  S  L :   M  L  M  W  E  D  G  F  C  R  G  R  G  T  D  C  L  E  E  M  D  G  E  D  L  V  R  K  A  F  S  K  M  S  I  Q  L  Y  N  Y  G  E  G :   L  M  G  K  V  A  S  D  K  C  H  K  W  V  F  K  E  P  T  E  C  E  P  N  I  S  N  Y  W  Q  S  S  F  D  A  :  L  P  P  E  W  T  D  Q  F  E  S  G  I  Q  :  T  I  A  V  I  Q  A  G  H  G  L  L  Q  L  G  S  C  K  I  :  I  P  E  D  L  H  F  V  L  R  M  R  H  T  F  E  S  L  G  Y  Q  S  G  F  Y  L  S  Q  L  F  S  S  T  R  T  S  S  P  S  S  A  I  P  L  K  Q  P  T  M  P  I  R  A  P  P  P  L  F  N  W  G  P  R  P  M  P  S  A  S  S  L  L  S  S  P  N  F  Q  N  S  A  R  L  G  I  P  Q  S  K  D  E  S  H  M  F  L  Q  L  P  H  S  S  E  P  R  M  E  D  M  M  G  A  A  A  D  H  E  S  D  I  K  W  P  N  G  L  T  F  F  S  A  L  T  G  R  N  D  D  S  R  I  L  F  N  P  D  S  L  G  S  K  P  D  H  N  Q  H  P  L  S  L  D  G  K  T  S  N  P  N  S  D  A  S  S  L  H  N  N  G  G  A  N  P  N  D  F  L  S  L  D  S  H  P  D  S  I  R  K  M  D  K  F  K  R  S  Y  T  L  P  A  R  M  A  S  S  S  N  S  S  T  S  L  D  Q  H  A  N  N  P  G  E  Y  R  N  E  G  G  M  Y  P  D  V  M  E  R  F  L  E  *  S  F  *  G  Y  G  W  E  K  L  Y  L  R  K  S  F  *  L  C  F  L  L  N  L  V  F  F  *  *  F  D  F  P  S  S  F  G  P  L  N  V  S  T  F  F  L  *  S  F  *  S  V  Y  L  E  M  K  E  N  L  C :   *  K  K  K  K  N   </first_frame>
            <second_frame>  E  E  E  K  R  V  S  I  F  V  V  D  K  H  L  Y  C  I  V  L  A  Q  Q  D  K  K  K  K  K  K  Q  *  K  L  N  L  *  E  K  F  F  *  R  S  L  K  F  E  C  *  E  E  K  R  G  L  V  F  I  I  K  E  R  S  G  K  K  K  G  K  K  W  W  A  Q  E  Q  Q  I  E  A  K  K  Q  L  G  *  W  P  F  M  R  H  *  E  A  S  V  L  T  Q  T  G  L  I  Q  C  S  G  P  F  V  L  D   : R  E  L  E  V  V  M  V  V  K  L  E  M  T  M  V  A   : *  C  *  C  G  K  M  D  S  A  E  V  E  E  Q  I  A  W  K  R  W  M  V  K  I  L  *  E  K  P  S  A  K  C  P  F  S  Y  I  I  M  E  K   : G  *  W  V  K  L  H  L  I  S  V  I  N  G  F  S  R  N  L  Q  N  V  N  Q  T  Y  L  I  T  G  R  V  H  L  M  L :   S  H  L  S  G  L  T  S  L  S  Q  G  F  R :   L  L  L  *  F  K  L  D  M  A  Y  C  N  W  D  P  A  R  L :   Y  R  K  T  S  I  S  C  *  E  *  G  T  R  S  S  H  *  A  I  N  L  A  F  I  C  H  N  Y  F  L  Q  Q  G  L  V  H  L  R  L  Q  F  L  L  S  S  R  P  C  Q  F  A  L  L  L  H  F  S  T  G  D  Q  G  Q  C  L  Q  R  L  R  Y  Y  R  L  P  T  S  R  T  P  R  D  L  V  F  H  S  R  K  M  N  H  I  C  S  F  N  F  L  I  H  P  N  H  E  W  K  T  *  W  E  L  L  L  I  M  R  V  I  S  S  G  L  M  D  *  L  S  L  V  L  S  L  V  E  M  M  I  P  G  S  C  S  I  L  I  A  *  V  P  N  R  I  I  I  S  I  R  L  V  L  M  G  R  H  Q  I  R  T  Q  M  L  L  A  C  T  T  T  E  V  L  I  Q  T  I  S  *  A  W  I  A  T  L  I  A  F  G  R  W  T  S  S  R  E  A  I  R  F  L  L  G  W  L  R  L  L  I  H  R  L  H  L  I  S  T  L  I  I  P  E  N  I  G  M  K  E  E  C  T  L  M  *  W  R  D  S  W  N  D  L  S  R  V  M  V  G  R  S  C  T  *  E  K  A  F  S  C  V  F  C  L  I  *  C  S  F  N  S  L  I  F  L  H  P  L  D  H  *  M  F  P  L  F  S  C  S  L  F  D  Q  F  I  *  K  *  R  K  I  Y   : A  K  K  K  K  K  T  </second_frame>
            <third_frame>   K  K  K  K  G  S  L  S  L  W  L  I  S  I  C  I  V  *  F  *  L  N  K  I  K  K  K  K  K  N  N  K  N  *  I  F  K  R  N  F  S  R  G  V  *  S  L  S  V  E  K  R  K  G  V  *  F  L  L  L  K  R  E  V  G  K  K  R  G  K  N  G  G  L  R  N  S  R  *  K  Q  R  S  S  W  D  D  G  P  S  *  G  T  K  K  R  L  S  *  H  R  L  D  L  F  S  V  L  D  H  S  S  S  T  :  E  S  *  R  W  *  W  L  *  S  W  R  *  Q  W  *  L  :  D  V  D  V  G  R  W  I  L  Q  R  *  R  N  R  L  L  G  R  D  G  W  *  R  S  C  E  K  S  L  Q  Q  N  V  H  S  V  I  *  L  W  R  R  :  V  D  G  *  S  C  I  *  *  V  S  *  M  G  F  Q  G  T  Y  R  M  *  T  K  H  I  *  L  L  A  E  F  I  *  C   : S  P  T  *  V  D  *  P  V  *  V  R  D  S   : D  Y  C  C  D  S  S  W  T  W  P  T  A  T  G  I  L  Q  D   : Y  T  G  R  P  P  F  R  V  K  N  E  A  H  V  R  V  T  R  L  S  I  W  L  L  F  V  T  T  I  F  F  N  K  D  *  F  T  F  V  C  N  S  S  *  A  A  D  H  A  N  S  R  S  S  S  T  F  Q  L  G  T  K  A  N  A  F  S  V  F  A  T  I  V  S  Q  L  P  E  L  R  E  T  W  Y  S  T  V  E  R  *  I  T  Y  V  P  S  T  S  S  F  I  R  T  T  N  G  R  H  D  G  S  C  C  *  S  *  E  *  Y  Q  V  A  *  W  I  N  F  L  *  C  S  H  W  *  K  *  *  F  Q  D  P  V  Q  S  *  *  L  R  F  Q  T  G  S  *  S  A  S  A  *  S  *  W  E  D  I  K  S  E  L  R  C  F  *  L  A  Q  Q  R  R  C  *  S  K  R  F  L  E  P  G  *  P  P  *  *  H  S  E  D  G  Q  V  Q  E  K  L  Y  A  S  C  *  D  G  F  V  F  *  F  I  D  F  T  *  S  A  R  *  *  S  R  R  I  *  E  *  R  R  N  V  P  *  C  D  G  E  I  L  G  M  I  F  L  G  L  W  L  G  E  V  V  L  K  K  K  L  L  V  V  F  S  A  *  F  S  V  L  L  I  V  *  F  S  F  I  L  W  T  I  E  C  F  H  F  F  L  V  V  F  L  I  S  L  S  R  N  E  G  K  F  M  :  L  K  K  K  K  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122556" stop="122716"/>
                    <exon start="122796" stop="122846"/>
                    <exon start="123548" stop="123676"/>
                    <exon start="123860" stop="123965"/>
                    <exon start="124080" stop="124121"/>
                    <exon start="124414" stop="124470"/>
                    <exon start="124688" stop="125434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKWEKKGEKMVGSGTADRSKEAVGMMALHEALRSVCLNTDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRGTDCLEEMDGEDLVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRTSSPSSAIPLKQPTMPIRAPPPLFNWGPRPMPSASSLLSSPNFQNSARLGIPQSKDESHMFLQLPHSSEPRMEDMMGAAADHESDIKWPNGLTFFSALTGRNDDSRILFNPDSLGSKPDHNQHPLSLDGKTSNPNSDASSLHNNGGANPNDFLSLDSHPDSIRKMDKFKRSYTLPARMASSSNSSTSLDQHANNPGEYRNEGGMYPDVMERFLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="133241" PGL_stop="136188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133241" e_stop="133310"/>
            <exon e_start="134359" e_stop="134601"/>
            <exon e_start="134754" e_stop="135030"/>
            <exon e_start="135567" e_stop="135721"/>
            <exon e_start="135856" e_stop="136188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133241" e_stop="133310" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134359" e_stop="134601" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134754" e_stop="135030" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.997">
            <gDNA_intron_boundary i_start="135031" i_stop="135566" i_length="536"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="135567" e_stop="135721" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="135722" i_stop="135855" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="135856" e_stop="136188" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133241" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="135940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133260" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133263" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133265" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133268" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133271" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133278" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133278" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133282" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="135994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133288" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="135999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133290" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133295" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="135943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133296" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134381" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134389" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135003" stop="135030"/>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201092" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135567" stop="135721"/>
              <exon start="135856" stop="136102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395313" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135624" stop="135721"/>
              <exon start="135856" stop="136184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGTTTTCTTCGTTTTTATTAATTTTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG : GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG : CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG : GTGATGTTCCTCGGGTTGATGGGCAGTTAGCAGTAGCAAGAGCATTTGGCGACAAGAGCTTGAAGATGCATTTAAGTTCAGAGCCAGATGTAGTGGTAGAGCTCATAGATGATGACACAGAGTTTCTCATTTTGGCTAGTGACGGCGTATGGAAG : GTACTGTCGAATCAGGAAGCTGCAGATTGCATTAAAGATATTAAGGATGCGCGATCAGCTGCAAAGCATCTCAATGAACATGCTCTTGCAAGGGGAAGTACCGATGATATATCCTGCGTAGTTGTAAGGTTCCAATAATCTTCTCTCTCTGCACTTGTTAGATGATGAAACGTGTGCTTAGATCGTATAGTTTCTTTGAAATGTAAAATCTGAACTAGTACTTGCTTTTGTCGATGGTTTGGTTGGTCGTGTTACTGTATAAACGTTTTAAAGTTCCAACATCAGGAGCTGTTCGCACACGAACTTCAAATAAACGGAATGTTGTTTGCTAGG</gDNA_template>
            <first_frame> N  L  F  S  S  F  L  L  I  L  H  H  D  W  R  Q  R  N  H  R  Q  N  *   : G  K  G  W  F  K  F  V  R  Y  R  K  R  *  E  *  D  V  E  E  H  N  P  W  V  S  H  G  *  G  K  I  A  S  H  H  G  R  L  C  F  C  T  V  *  T  S  *  *  K  *  T  W  S  I  C  N  I  *  W  P  F  E  P  R  D  S  *  V  P  P  L  S  S  I  Q  Q  Y  S  Q  *   : A  *  L  L  G  *  T  G  V  C  N  Q  E  S  L  P  Y  N  R  Y  N  Y  F  G  *  G  C  *  F  G  *  R  R  I  H  C  C  Y  S  H  I  D  *  W  S  E  T  S  C  C  *  C  R  R  F  S  C  R  H  L  Q  K  W  S  G  Q  A  A  V  H  R  S  *  A  W  Q  G  E  G  D  H  R  G  Q  R  W  F  R  V  Q  F  S  R :   *  C  S  S  G  *  W  A  V  S  S  S  K  S  I  W  R  Q  E  L  E  D  A  F  K  F  R  A  R  C  S  G  R  A  H  R  *  *  H  R  V  S  H  F  G  *  *  R  R  M  E   : G  T  V  E  S  G  S  C  R  L  H  *  R  Y  *  G  C  A  I  S  C  K  A  S  Q  *  T  C  S  C  K  G  K  Y  R  *  Y  I  L  R  S  C  K  V  P  I  I  F  S  L  C  T  C  *  M  M  K  R  V  L  R  S  Y  S  F  F  E  M  *  N  L  N  *  Y  L  L  L  S  M  V  W  L  V  V  L  L  Y  K  R  F  K  V  P  T  S  G  A  V  R  T  R  T  S  N  K  R  N  V  V  C  *  </first_frame>
            <second_frame>  I  C  F  L  R  F  Y  *  F  C  I  M  T  G  G  K  E  I  I  D  K  I  K  :  E  K  V  G  L  S  S  S  D  T  G  R  G  K  S  K  M  S  K  N  I  T  H  G  Y  H  M  V  E  G  K  S  H  H  T  M  E  D  Y  V  F  A  Q  F  K  Q  V  D  E  N  E  L  G  L  F  A  I  F  D  G  H  L  S  H  E  I  P  E  Y  L  R  S  H  L  F  N  N  I  L  N  E  :  P  N  F  W  A  E  P  E  S  A  I  R  K  A  Y  R  I  T  D  T  T  I  L  D  K  A  A  D  L  G  K  G  G  S  T  A  V  T  A  I  L  I  N  G  Q  K  L  V  V  A  N  V  G  D  S  R  A  V  I  Y  K  N  G  V  A  K  Q  L  S  I  D  H  E  P  G  R  E  R  E  I  I  E  G  K  G  G  F  V  S  N  F  P   : G  D  V  P  R  V  D  G  Q  L  A  V  A  R  A  F  G  D  K  S  L  K  M  H  L  S  S  E  P  D  V  V  V  E  L  I  D  D  D  T  E  F  L  I  L  A  S  D  G  V  W  K  :  V  L  S  N  Q  E  A  A  D  C  I  K  D  I  K  D  A  R  S  A  A  K  H  L  N  E  H  A  L  A  R  G  S  T  D  D  I  S  C  V  V  V  R  F  Q  *  S  S  L  S  A  L  V  R  *  *  N  V  C  L  D  R  I  V  S  L  K  C  K  I  *  T  S  T  C  F  C  R  W  F  G  W  S  C  Y  C  I  N  V  L  K  F  Q  H  Q  E  L  F  A  H  E  L  Q  I  N  G  M  L  F  A  R </second_frame>
            <third_frame>   F  V  F  F  V  F  I  N  F  A  S  *  L  E  A  K  K  S  S  T  K  L  R :   K  R  L  V  *  V  R  Q  I  P  E  E  V  R  V  R  C  R  R  T  *  P  M  G  I  T  W  L  R  E  N  R  I  T  P  W  K  I  M  F  L  H  S  L  N  K  L  M  K  M  N  L  V  Y  L  Q  Y  L  M  A  I  *  A  T  R  F  L  S  T  S  A  L  I  Y  S  T  I  F  S  M  S :   L  T  S  G  L  N  R  S  L  Q  S  G  K  P  T  V  *  Q  I  Q  L  F  W  I  R  L  L  I  W  V  K  E  D  P  L  L  L  Q  P  Y  *  L  M  V  R  N  *  L  L  L  M  S  E  I  L  V  P  S  F  T  K  M  E  W  P  S  S  C  P  S  I  M  S  L  A  G  R  G  R  S  S  R  A  K  V  V  S  C  P  I  F  Q  :  V  M  F  L  G  L  M  G  S  *  Q  *  Q  E  H  L  A  T  R  A  *  R  C  I  *  V  Q  S  Q  M  *  W  *  S  S  *  M  M  T  Q  S  F  S  F  W  L  V  T  A  Y  G  R :   Y  C  R  I  R  K  L  Q  I  A  L  K  I  L  R  M  R  D  Q  L  Q  S  I  S  M  N  M  L  L  Q  G  E  V  P  M  I  Y  P  A  *  L  *  G  S  N  N  L  L  S  L  H  L  L  D  D  E  T  C  A  *  I  V  *  F  L  *  N  V  K  S  E  L  V  L  A  F  V  D  G  L  V  G  R  V  T  V  *  T  F  *  S  S  N  I  R  S  C  S  H  T  N  F  K  *  T  E  C  C  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133266" stop="133310"/>
                    <exon start="134359" stop="134601"/>
                    <exon start="134754" stop="135030"/>
                    <exon start="135567" stop="135721"/>
                    <exon start="135856" stop="135993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCIMTGGKEIIDKIKEKVGLSSSDTGRGKSKMSKNITHGYHMVEGKSHHTMEDYVFAQFKQVDENELGLFAIFDGHLSHEIPEYLRSHLFNNILNEPNFWAEPESAIRKAYRITDTTILDKAADLGKGGSTAVTAILINGQKLVVANVGDSRAVIYKNGVAKQLSIDHEPGREREIIEGKGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVVVELIDDDTEFLILASDGVWKVLSNQEAADCIKDIKDARSAAKHLNEHALARGSTDDISCVVVRFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="133268" e_stop="133310"/>
            <exon e_start="134359" e_stop="134601"/>
            <exon e_start="134754" e_stop="135030"/>
            <exon e_start="135266" e_stop="135273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.812" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="133268" e_stop="133310" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="133311" i_stop="134358" i_length="1048"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134359" e_stop="134601" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="134602" i_stop="134753" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="134754" e_stop="135030" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.812">
            <gDNA_intron_boundary i_start="135031" i_stop="135265" i_length="235"/>
          </intron>
          <exon e_serial="4" e_score="0.625">
            <gDNA_exon_boundary e_start="135266" e_stop="135273" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133268" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133271" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133278" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135030"/>
              <exon start="135266" stop="135273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133278" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133278" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="134945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133290" stop="133310"/>
              <exon start="134359" stop="134601"/>
              <exon start="134754" stop="135004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCATCATGACTGGAGGCAAAGAAATCATCGACAAAATTAAG : GAAAAGGTTGGTTTAAGTTCGTCAGATACCGGAAGAGGTAAGAGTAAGATGTCGAAGAACATAACCCATGGGTATCACATGGTTGAGGGAAAATCGCATCACACCATGGAAGATTATGTTTTTGCACAGTTTAAACAAGTTGATGAAAATGAACTTGGTCTATTTGCAATATTTGATGGCCATTTGAGCCACGAGATTCCTGAGTACCTCCGCTCTCATCTATTCAACAATATTCTCAATGAG : CCTAACTTCTGGGCTGAACCGGAGTCTGCAATCAGGAAAGCCTACCGTATAACAGATACAACTATTTTGGATAAGGCTGCTGATTTGGGTAAAGGAGGATCCACTGCTGTTACAGCCATATTGATTAATGGTCAGAAACTAGTTGTTGCTAATGTCGGAGATTCTCGTGCCGTCATTTACAAAAATGGAGTGGCCAAGCAGCTGTCCATCGATCATGAGCCTGGCAGGGAGAGGGAGATCATCGAGGGCAAAGGTGGTTTCGTGTCCAATTTTCCAG : ATGTTGCT</gDNA_template>
            <first_frame> L  H  H  D  W  R  Q  R  N  H  R  Q  N  *   : G  K  G  W  F  K  F  V  R  Y  R  K  R  *  E  *  D  V  E  E  H  N  P  W  V  S  H  G  *  G  K  I  A  S  H  H  G  R  L  C  F  C  T  V  *  T  S  *  *  K  *  T  W  S  I  C  N  I  *  W  P  F  E  P  R  D  S  *  V  P  P  L  S  S  I  Q  Q  Y  S  Q  *   : A  *  L  L  G  *  T  G  V  C  N  Q  E  S  L  P  Y  N  R  Y  N  Y  F  G  *  G  C  *  F  G  *  R  R  I  H  C  C  Y  S  H  I  D  *  W  S  E  T  S  C  C  *  C  R  R  F  S  C  R  H  L  Q  K  W  S  G  Q  A  A  V  H  R  S  *  A  W  Q  G  E  G  D  H  R  G  Q  R  W  F  R  V  Q  F  S  R :   C  C  </first_frame>
            <second_frame>  C  I  M  T  G  G  K  E  I  I  D  K  I  K  :  E  K  V  G  L  S  S  S  D  T  G  R  G  K  S  K  M  S  K  N  I  T  H  G  Y  H  M  V  E  G  K  S  H  H  T  M  E  D  Y  V  F  A  Q  F  K  Q  V  D  E  N  E  L  G  L  F  A  I  F  D  G  H  L  S  H  E  I  P  E  Y  L  R  S  H  L  F  N  N  I  L  N  E  :  P  N  F  W  A  E  P  E  S  A  I  R  K  A  Y  R  I  T  D  T  T  I  L  D  K  A  A  D  L  G  K  G  G  S  T  A  V  T  A  I  L  I  N  G  Q  K  L  V  V  A  N  V  G  D  S  R  A  V  I  Y  K  N  G  V  A  K  Q  L  S  I  D  H  E  P  G  R  E  R  E  I  I  E  G  K  G  G  F  V  S  N  F  P   : D  V  A </second_frame>
            <third_frame>   A  S  *  L  E  A  K  K  S  S  T  K  L  R :   K  R  L  V  *  V  R  Q  I  P  E  E  V  R  V  R  C  R  R  T  *  P  M  G  I  T  W  L  R  E  N  R  I  T  P  W  K  I  M  F  L  H  S  L  N  K  L  M  K  M  N  L  V  Y  L  Q  Y  L  M  A  I  *  A  T  R  F  L  S  T  S  A  L  I  Y  S  T  I  F  S  M  S :   L  T  S  G  L  N  R  S  L  Q  S  G  K  P  T  V  *  Q  I  Q  L  F  W  I  R  L  L  I  W  V  K  E  D  P  L  L  L  Q  P  Y  *  L  M  V  R  N  *  L  L  L  M  S  E  I  L  V  P  S  F  T  K  M  E  W  P  S  S  C  P  S  I  M  S  L  A  G  R  G  R  S  S  R  A  K  V  V  S  C  P  I  F  Q  :  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133269" stop="133310"/>
                    <exon start="134359" stop="134601"/>
                    <exon start="134754" stop="135030"/>
                    <exon start="135266" stop="135273"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CIMTGGKEIIDKIKEKVGLSSSDTGRGKSKMSKNITHGYHMVEGKSHHTMEDYVFAQFKQVDENELGLFAIFDGHLSHEIPEYLRSHLFNNILNEPNFWAEPESAIRKAYRITDTTILDKAADLGKGGSTAVTAILINGQKLVVANVGDSRAVIYKNGVAKQLSIDHEPGREREIIEGKGGFVSNFPDVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 123 chains have been computed
$ 
$ memory statistics:
$ 746848 bytes spliced alignments in total
$ 82 spliced alignments have been stored
$ 9107 bytes was the average size of a spliced alignment
$ 28296 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1572 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 148 backtrace matrices have been allocated
$ 
$ date finished: 2008-11-22 05:11:39
-->
