<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-06 20:31:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8292" ref_strand="+" ref_description="SGN-M8292 C2_At4g18520 [cosii_markers]">
      <seq>tgtgcaaagctggaagatatcgagagagggaagctgatccattcctctataagcaagacacctgctctgtccaatgtgtttgtgggcagtgcattgatcaatatgtatgcaaaatgtggacatcttcctgaggcaattcaaatatttgataacatgcctgagaagaatttggtttcttggaaggcgatgattgttgcttatgctaaaaacggaaactgtggagaggcattgaagctcatgtatcgtatgcaagtagagggcattgaggtggatgattatatcctcgctactgttctcacagcatgcggagaatataaggaaactatcaagtctaaatcgaagtatttcttgcatccaaatagttctataacctaaacagatatgagtctcctcaagaagtttcagcgaaatacaataacatatccagtgtaaatgatgatttcgtcatgtctcaatgacagctgaactctgagtgcttaatgttagagtctggttgatagctattcgtcatcggcttacttctggaccatgatggacatgtctatagcccctgcctcgccagataaagaatgaggtacagtttatcggactctgcttttagaggtccataatattcgaacgttgtatcttctaacctcagtgatactctgtattatacgtaggttaggtccctacgactgcgtattgtcatattaagatcatgtatacttgaactttttcttagcgaagtgataaagaaaaggttataacaacaactatgtatactaaatatttgaatgttaaaaatatactagtatcattcatgatgtcttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="13140" stop="14587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13440" g_stop="14079" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14080" i_stop="14111" i_length="32">
            <donor d_prob="0.328" d_score="0.94"/>
            <acceptor a_prob="0.630" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14112" g_stop="14299" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="828" r_length="189" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-M8292" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13440" e_stop="14079"/>
          <exon e_start="14112" e_stop="14299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGTTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGTTCATAGCTA-T-GTCATCGGCTTACTTCTGGACCATGATGGACATGTCTAGTAGCCCCTGCCTCGCCTGATAAAGAATGAGGTACAATTTATCGGACTGTGCTTTTAGAGGTCCATCATATTTGAACGTTGTATCTTCTAACCTCAGTGATACTCTGTGTTGTATCTTCTAACCTCAG-TGATACTCTGTATTATACGTA-GTTAGGTCCCTACGACCGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGTGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTGTACTAGATATTTGAATGTTAAAAACATACTAGTAACATTCATGATTGTCTTCAAATTTTTAGCTAAA</genome_strand>
        <mrna_strand>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGAAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGCATTGAGGTGGATGATTATATCCTCGCTACTGTTCTCACAGCATGCGGAGAATATAAGGAAACTATCAAGTCTAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGTTTCAGCGAAATACAATAACATATCCAGTGTAAATGATGATTTCG-TCATGTCTCAATGACAGCTGAACTCTGAGTGCTTAATGTT-AGAGTCTGGTTGATAGCTATTCGTCATCGGCTTACTTCTGGACCATGATGGACATGTCTA-TAGCCCCTGCCTCGCCAGATAAAGAATGAGGTACAGTTTATCGGACTCTGCTTTTAGAGGTCCATAATATTCGAACGTTGTATCTTCTAACCTCA................................GTGATACTCTGTATTATACGTAGGTTAGGTCCCTACGACTGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGCGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTATACTAAATATTTGAATGTTAAAAATATACTAGTATCATTCATGA-TGTCTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7745" ref_strand="+" ref_description="SGN-M7745 C2_At3g15180 [cosii_markers]">
      <seq>tctcatctttttcctcaccgtctgcaacatcttttttctctctctctgatacactaacaatggcggaagagtactctgtggatccggcgcagttactggaagcagctactgactttgcgtatcatcctggcgctctttccgatgcttcagctcaagactttcttaatcgatttcctcttccagccattatcaatgctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagagaagcttttcaaaacaagatatggagcatcactcattccacactacatgccatttgttattgtcggtctcggtgcagagtctcagaaagtcagacgcttagcatgccaaactgtatcctgcctgttggagaatattgatgaagcacttgttatacaactaattcatgagtatggagtttatcaacttttgcttaattgcctcataagtggggatgcggaagttgctgctgcatctacagatgcaattaggaaactggctagccattcgaaaggcattgatatcatatttcctgaaagcggcaatgaagcgacaaacctcttgaacttcgcaaccaactgtgcacctctgggacgagttcgtgttttagctttgatagtgaagttattctccatttccacttctgtggcatcaagagtctacagctcaaatcttcttagcttgttggagacagaaatcagcaattcagatgatacattagtcacttcgagcagcttggaactcctatatgagttggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="30039" stop="36126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30339" g_stop="30467" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30614" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="193" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31508" g_stop="31616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="302" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127">
            <donor d_prob="0.636" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32744" g_stop="32806" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="365" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.616" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="463" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="530" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34672" g_stop="34743" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="602" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34744" i_stop="35657" i_length="914">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.703" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35658" g_stop="35819" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="764" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-M7745" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30339" e_stop="30467"/>
          <exon e_start="30551" e_stop="30614"/>
          <exon e_start="31508" e_stop="31616"/>
          <exon e_start="32744" e_stop="32806"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34743"/>
          <exon e_start="35658" e_stop="35819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTGGTATTTGTGATTTTTTTTTGACTTGTTTCTCGTCTTTGGTAAATAAGCAATTGGTTAATTTGTGTATCTTACAATTTTTTCAGGCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAAGTATCTACTATTTTCTCTACTCTGTGTTGTCAGCTCTTTCTACATGAGTTTTCGGCTTACAAGTTACAATACACTCTGTATCAATTGCTCACTGAATGTGTGTGGCAGAGTTAGAAACTGTGTAAACTCCTTCCAAATGCTACGATTAATCCAGTGGAGATTTGTGTAGTTTTTTTTTTGAATAAAATGTTTAAACTAGACAAAAGTAATACAGATTACAATCTTTTATTGGCTCAGTTCATTTTTCTCAGTCATGTTTTGCTTCATGAGAGTCAATTTAACTAATATTTGAAGTTAAAGTTGAATTAGATTAATTTAATATTTTATAATTTAGATGTTCGAAAACTATAAATTGCAAGCCTTCTCATATTATATGTTGAAAAATAAGTCTTAAAATGTTGATCAAAATTCATGCTATTTGACTTTTGAAAAGTGAAAAGTGACAAATTAAAGTTAATGGAGTTTAAACCCGTTTGAATCTTTTTGGAATGGAGAGGGTATTCAACTTTCTGTAGTGGTGCTCCTACATGCTTGAATTTTACCATACCACATCACCTAGCTTAGAGAGATATAGTTTTGTCAATTTCCCACAAAGGGGGATTACACTGGGTCTGCTGTTGTAATTTCCCACTGAATATGTGTGGCAGTGTTAGAAACTATGCAAATTCCTTACAATTACAAGGGCTAATGCATTAATCCTGTGGAGATTTGGTTAGGATTCTTTTTTTTTTTTTGAAATGAAATGTTTAAACTATATAAACATACTATAGATTACAATCTTTTACAAGTAAGAGAATTTAAACAATGTTCAAACAATCTTGTTTGTGTATTTTTGGGACAGGTTGGAAATGCTCCTACTGGCTTGCTGATTGTTAACTTTGAATTTCTTGCAGTGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTGGTATGTTTTTTTGTGATGAATGTTAAAAGTTCTGTGTGCCTTTTGATAGGCAGTGTGCTGTATGCAATGAACAGCTCTGCTCTGAAATTAGTTCTTCACTTTCGGTCATGCTTGAATTTGTGTGAAAAACATGTCTAATGAGCAGTTCTCTTTTGAATTTATTGCTTTACTTGATGTCATGCTGAGATAAATTATTATAGTTGCTATCCAGTTAATCATAGCATATGAAATTATTCTTAAATAAAGAATCTATGAGACAAAGACACTACTCTTAATCTATACATACCACTAAGGAGCCTCAGCGCAATGGTAGGAGATTCTACTATTTGACCAGGAGGTCTGGACTTAAAGTTGGGGAACATTCTCTTGCAAACATACAATGTAAAGCTACATAAAATTAACCCAACATAGTCTGGCCCTTCCTTGCACCCCCCACAGAAAGAGTTTCTTGACTAGGTTTCCTATTCTTTAACCATCATACTTATTATTTCTTCTAATTTTGGTGAAGCTTCTTTGACATTCACTTTACTTTGTAGTTTGTAATGAGAGAATCATACTTCAGAAATATCTTTTCAAATCCTAACTTGGTTTTACTTTTTGCATAAATTACACATAACATCTACATGACGTAAGTTCAAAAGTTCTAATATCTATAGTTCGTATATCTTCTCTGATTCAAACAGAAATTATAATCATCGATCTATTTTGTTATGGATGTAATTGAGCTGGTGCCTTGTGTCTGTCTTGATTATTGAACTTATCTTACTCATCCCTCCAAAATTAAAATAAGAAAGAGGAAATAAAGTAATTAAAGTGGAATCCAATGTCAGTGGTGGTTCTTGATTCATCTGAACCTCATTGAGCTGTGGTATGCATTGCTAGTACTTGGGCTTTTCATTTTGCTAAATCCTCAGGGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG</genome_strand>
        <mrna_strand>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG...................................................................................GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT..........................................................................................................................GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7745-2" ref_strand="+" ref_description="SGN-M7745-2 C2_At3g15180-2 [cosii_markers]">
      <seq>ctgactttgcgtatcatcctggcgctcattccgatgcttcagctcaagactttctcaatcgatttcctcttccagccattatcaatgctttgcaaacaaaagcagattaccctggcctagaaagtgctttggttgattgtttagaaaagcttttcaaaacaagatatggagcatcactcattccacactacatgccatttgttattgtcggtctcggtgcagagtctcagaaagtcagacatttagcatgccaaacagtatcctgcctgttggagaatattgatgaagcaattgttatacaactaattcatgagtatggagttcatcaacttttgcttaattgcctcatcagtggggatgcggaagttgctgcttcatctacagatgcaattaggaaactggctagccattctaaaggcattgatatcatagttcctgaaagcggcaatgaagcgacaaacctcgtgaacttcgcaaccaactgttcacctctgggacgagttagagttttagctttgatagtgaagttattctccatttccacttctgtggcatcaagagtctacagctcaaatcttcttagcttgttggagacagaaatcagcaattcaaatgatacattagtcactttgagcagcttggaactcctatatgagttggctgatgttcagcacagcactgagttcttgtcaaggactaagcttctccaaattcttacttctattattagtgatgcttctgctgaatcgattttgcgatcaagagcaatgatgataactggaaggctgatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="30147" stop="37196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30447" g_stop="30467" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30551" g_stop="30614" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="85" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31508" g_stop="31616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="194" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127">
            <donor d_prob="0.636" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32744" g_stop="32806" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="257" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.616" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33366" g_stop="33463" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="355" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019">
            <donor d_prob="0.298" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34483" g_stop="34549" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="422" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34672" g_stop="34743" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="494" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34744" i_stop="35657" i_length="914">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.703" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="35658" g_stop="35819" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="656" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="35820" i_stop="36655" i_length="836">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="36656" g_stop="36729" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="730" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="36730" i_stop="36832" i_length="103">
            <donor d_prob="0.096" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36833" g_stop="36893" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="791" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-M7745-2" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7745-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30447" e_stop="30467"/>
          <exon e_start="30551" e_stop="30614"/>
          <exon e_start="31508" e_stop="31616"/>
          <exon e_start="32744" e_stop="32806"/>
          <exon e_start="33366" e_stop="33463"/>
          <exon e_start="34483" e_stop="34549"/>
          <exon e_start="34672" e_stop="34743"/>
          <exon e_start="35658" e_stop="35819"/>
          <exon e_start="36656" e_stop="36729"/>
          <exon e_start="36833" e_stop="36893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTTTGCGTATCATCCTGGTATTTGTGATTTTTTTTTGACTTGTTTCTCGTCTTTGGTAAATAAGCAATTGGTTAATTTGTGTATCTTACAATTTTTTCAGGCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAAGTATCTACTATTTTCTCTACTCTGTGTTGTCAGCTCTTTCTACATGAGTTTTCGGCTTACAAGTTACAATACACTCTGTATCAATTGCTCACTGAATGTGTGTGGCAGAGTTAGAAACTGTGTAAACTCCTTCCAAATGCTACGATTAATCCAGTGGAGATTTGTGTAGTTTTTTTTTTGAATAAAATGTTTAAACTAGACAAAAGTAATACAGATTACAATCTTTTATTGGCTCAGTTCATTTTTCTCAGTCATGTTTTGCTTCATGAGAGTCAATTTAACTAATATTTGAAGTTAAAGTTGAATTAGATTAATTTAATATTTTATAATTTAGATGTTCGAAAACTATAAATTGCAAGCCTTCTCATATTATATGTTGAAAAATAAGTCTTAAAATGTTGATCAAAATTCATGCTATTTGACTTTTGAAAAGTGAAAAGTGACAAATTAAAGTTAATGGAGTTTAAACCCGTTTGAATCTTTTTGGAATGGAGAGGGTATTCAACTTTCTGTAGTGGTGCTCCTACATGCTTGAATTTTACCATACCACATCACCTAGCTTAGAGAGATATAGTTTTGTCAATTTCCCACAAAGGGGGATTACACTGGGTCTGCTGTTGTAATTTCCCACTGAATATGTGTGGCAGTGTTAGAAACTATGCAAATTCCTTACAATTACAAGGGCTAATGCATTAATCCTGTGGAGATTTGGTTAGGATTCTTTTTTTTTTTTTGAAATGAAATGTTTAAACTATATAAACATACTATAGATTACAATCTTTTACAAGTAAGAGAATTTAAACAATGTTCAAACAATCTTGTTTGTGTATTTTTGGGACAGGTTGGAAATGCTCCTACTGGCTTGCTGATTGTTAACTTTGAATTTCTTGCAGTGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATGGTATGGCAGTAATGCTAGTACTACTAAATAAGCTAAATTCGGATCTTCATATCTGAATGAGTTGTTGTGGGTCTATCACAAGTGTGTGGTGAAGTATATATCAGCTATTTGGTTATTTAAAGCTTAGACCATACTATTGTGGGCAATGTGAAACATTAGATTGATAAGTTTTCCCTTTAGAGCTAAATGCTAAGGAGCTTTTGGGTTCTACTTAGTAGAGAGCAAAGGAGAAGTGCTTACTCACAATGAACGGGTACAGTTTAAGAAAATTTAATCAACACTTGTTATTATTCTGTGTTTTTGTGTATGAAGGAAGTTGACCGATGTGGGGTGATAGATATTGACAGCTATAATTTAAACCAACTTATAGCGGTAGGGGTACAGCTTCCTTTCTAAAGCAACATAAGGAATTTTAAGGTTCATTTTCTTGCAGTTCTTTCTGCTTCGAGCTATTCGAATGGAGCGTTAGCCTTCATCTTGTAATCATGTAACTTCTGTTCATGATTGATTTAAAAGGTTCTTGATTAATGTGATCAAGAATGATTTACTCTTTTACAAAAGTTCTGTTCATTGTTAACACGTAAACTATACCCAGTATTTTCACTGATTTGACTTTCTTTTATTTTATGACTACAAGGAACCGTTAGAGAGCTTAGAGAAAAATAGAGAAGGAAGTGAACATCATAAAATGTTTAGAAGAGACTTTTTTAGAAAATCAGAAACAGAAGATAACAATATCTGTTGGATTTCAGAAATCAAACCAAAACCTTTTTCCAAAGAGAAAATAATCCTATTAATTGGGTTTTCCTAACAGCTAATACCTCCCCTAAAAATTAATTTCCAAAATCTTTTCAGAATATCTAGACTTTTCAATGTTGAGCCACAAATCCAGAGAAATGATCTTAGATAGCAATGAGGAAATATACTTTGAATTTATCTGTGTAAGGATCTCCTGTGTGGTCTTATAGAGCTAGTCAATCGTAATTCAATGCACACAAATAGTTTATTCCCTTATCCATCTCCGTGCAACATTTGTACTTACTCTTATGCGTGTCCATCATAATAGAATTTGAGGTAAATCATTAATTTTTTCTAAATTGCTTGGTCTGGTTTCTGCTTATTTGCAGCCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACTGTAAGTGCTTCTATGATAATTTCAACCCTTTTTTGTTAAGCATAAGAGTATGTGCCTCCAAAGTAAATTTAAGATCTTTTCACCTATTAGTTTTTCAGTTTCCACTCCATGGAGACCCTTTCTGTATGGATGCTTATTTATCCGGAAGACATGTAGCTAACTCTGTAGGATGATGTGGGTGTATGAGAGAACTGAATAGTGAGGTTCATGGATTTAACAGCTCTCATATTTCCGTGTATGTGTCTCTGGATATTTTAAGCAGGATTGATGTTAATCTGAAGTTTACAACTTGGCAAGTTTAGACTATTTTTCTTATGAGAAACAGAATATGGGAAAGTGGTTATTGGAATTGCTGAATGTTTCAATATTCGTTGCTACACATTCTCATCATGCTGGAGAATTCACTTATTGTTGTAGCTATTCATTTTGCTTTCCTCATTGAGTGCTCCATGTCGTTCTAAGATTTAGCTATCTTTGTTTGACTTGCTGAAAACCATGAATATGGTCAATCTTTTTTGGTCTCCAAGTTTGACTCTCATGCAGTAGTAACCATGTACAGGTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGGGTAAGGCGCAGTGCAATTTCTTACCATATGCAATCACTGACTGAACTGTCTATGATTTTTACGTTTGTTTTGTGGAGATGGCTTTGTTGGATGTACTGATCTTGCTATGGGCAGGCCTTTTTGTGGCAGTTGATTTGATTTCACGTGCTTCTTTGAGAGTCGATTTACTTCTGCTTTTGCCTGCATAGTTTCGACATCACATGTTATTCTTACCCCTTCAACTGTCATATGGGGTCATTCTAAGAGAATATGGCGTGGTCATGAGTTAGAAAAATAATATGTACAGGAGTTAGATCAGATAACTAATTGTTCTCTTTTGTCGTTTCATCCGCTAGCATGATATGGTCTACTAAAGTACTTCAACCAGGTAGTATGACCTCTTTCCAATTATCCTCTTTGATTTTACATTTTTCTTTTAGAATTTTTTTTTGATCGTGTCATATGAACGAATGGCTCTTGTATTACCTACATGTCTACACTTCGTGAACACATTGTATAATGTGTTGTGAGTTGGGATTCTACGTTTGCTCTTGGAGACCAAAACACAGATACTTGTGACAATATTTCTTGTCAATGACAAAATTTTGAATGAGAACTATTATTTTATTTCCCTTTTAAACCTTTTTCTAAGCCATGTCCTCAAGATGCATCTTTGTTTGCATGCTATTTGCCTCCTGAATTGCTGACTAGTCGGTTTTGGGCTCCCAATGTGGAGGTTGCTTGTGAACTGATTTTGTAACGTCATGCTGATTATGTTTTGGAACCTGTCATCTTTTACTACGACATTCTTTAGTTTCTCACATCCTAGTGGTGATGCTTTACATGCATAGATCTGTGTGATTTTGCTGTGCCATATGCTTGTTGTGACTTCTTAAAGTAGAATTGTACATCATCAGTCGTGATGATGACATGTGATTAGCAAACATCAATCAGAAAAGTATGCACCCTAATGTCACTTCTTTTTCCTCTTCTAGAAATTGGGTCTGCTTGTAGTCATGTAGGGTTTATTATTCTGGCAGGGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATTGTATGTAGTATCTGCTTCTTATCTTGGTCATTGCACATACATTTCTGCATGCCTGTGGTGATAATTCGACCAGATATATTGTAAATAAGGATCTCTGTTGAATTTAATAAAATTTTCTGAAGGATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTGGTATGTTTTTTTGTGATGAATGTTAAAAGTTCTGTGTGCCTTTTGATAGGCAGTGTGCTGTATGCAATGAACAGCTCTGCTCTGAAATTAGTTCTTCACTTTCGGTCATGCTTGAATTTGTGTGAAAAACATGTCTAATGAGCAGTTCTCTTTTGAATTTATTGCTTTACTTGATGTCATGCTGAGATAAATTATTATAGTTGCTATCCAGTTAATCATAGCATATGAAATTATTCTTAAATAAAGAATCTATGAGACAAAGACACTACTCTTAATCTATACATACCACTAAGGAGCCTCAGCGCAATGGTAGGAGATTCTACTATTTGACCAGGAGGTCTGGACTTAAAGTTGGGGAACATTCTCTTGCAAACATACAATGTAAAGCTACATAAAATTAACCCAACATAGTCTGGCCCTTCCTTGCACCCCCCACAGAAAGAGTTTCTTGACTAGGTTTCCTATTCTTTAACCATCATACTTATTATTTCTTCTAATTTTGGTGAAGCTTCTTTGACATTCACTTTACTTTGTAGTTTGTAATGAGAGAATCATACTTCAGAAATATCTTTTCAAATCCTAACTTGGTTTTACTTTTTGCATAAATTACACATAACATCTACATGACGTAAGTTCAAAAGTTCTAATATCTATAGTTCGTATATCTTCTCTGATTCAAACAGAAATTATAATCATCGATCTATTTTGTTATGGATGTAATTGAGCTGGTGCCTTGTGTCTGTCTTGATTATTGAACTTATCTTACTCATCCCTCCAAAATTAAAATAAGAAAGAGGAAATAAAGTAATTAAAGTGGAATCCAATGTCAGTGGTGGTTCTTGATTCATCTGAACCTCATTGAGCTGTGGTATGCATTGCTAGTACTTGGGCTTTTCATTTTGCTAAATCCTCAGGGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAGGTTTGCTTCTAGCTAGCTATAGAATTTTCCTCTACATGTGATCATTGCAGTTTGCATTTTTCTTGTCACCATAAGGTCTTATCAGCCATAAATTTTGCATATTTGTTCAGCACTGGTAGAACATATCTCTGGGATTTTATTTGTTCAAGAAACTCAGGAAGTCCTTGTCATATAAGTTGTGCGCTCTTCACGCAAAGTATCAACTTGTAACCTGTTCGACATATCACAAAGAGAATGCAGAACTATTTTCTTTGATCGCAGAATAACATTGCCGACTCTGAACCATAACTATCTAGTAGTATTGGTGATGTGACCATGCCTTTTTTCTTTATGCCAAGCACTTGATGTTCTCTTTTTCCCCAGCTATCGAGTAAATCACTCTGTTGCTTTTTTATGTTTTGTGCCTTCAGCTACTGTTCTGAGATGTTGGTCCCATAGTCTATAGTAAACATAGAAGGAAATGAAATAATGAGGTAAATACTCTGAAAATATAAGGCAGAGAACTAGGGTTAGGTATTTACCTAAAGCAACCTTTTCCTTGTCTGCCGTTAATACCTTATCAAAACTTTGGATCATCATGTGATGTGGAGGAAAGATGGCTAACACTTGGAAGTTTCCATATAAATTTAAGAGCTTTTTCCTGAATATGTTTTTCTTTCTCTAGCTACAGGGGATCTAGTGGTGGCATATATTAAATACCCTCCTTTTATTTGGGGGTTTGTACTTGTGTGCTAATCTTCTATATGTTTTATTCTACAATCACTTAATAGCCTTTTCTTCAATTTGTTCCTGATTATGTTTTACTTGTTTTTCTTGTATGTGCTGGGTGAATGAAGTTGGCTGATGTTGAGCACAGCACTGAGTTCTTGTCAAGGACTAAGTTTCTCCAAATTCTTACTTCTATTATTAGGTTTGCACACGAGAATTGCTGCTTGTGATTCTGAATTTTATGTTCTGGTCATTCAATCATTGTAACTATCATATTTATTTCTTCACCTGTTTATCTTCCTTAGTGATGCTTCTGCTGAATCGATTTTGCGATCAAGAGCAATGATGATAACTGGAAGGCTGATG</genome_strand>
        <mrna_strand>CTGACTTTGCGTATCATCCTG...................................................................................GCGCTCATTCCGATGCTTCAGCTCAAGACTTTCTCAATCGATTTCCTCTTCCAGCCATTATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAAAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACATTTAGCATGCCAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTGCCTGTTGGAGAATATTGATGAAGCAATTGTTATACAACTAATTCATGAGTATGGAGTTCATCAACTTTTGCTTAATTGCCTCATCAGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGGAAGTTGCTGCTTCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCTAAAGGCATT..........................................................................................................................GATATCATAGTTCCTGAAAGCGGCAATGAAGCGACAAACCTCGTGAACTTCGCAACCAACTGTTCACCTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGAGTTAGAGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAAATGATACATTAGTCACTTTGAGCAGCTTGGAACTCCTATATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGATGTTCAGCACAGCACTGAGTTCTTGTCAAGGACTAAGCTTCTCCAAATTCTTACTTCTATTATTAG.......................................................................................................TGATGCTTCTGCTGAATCGATTTTGCGATCAAGAGCAATGATGATAACTGGAAGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7746" ref_strand="+" ref_description="SGN-M7746 C2_At3g15190 [cosii_markers]">
      <seq>ttcagcttttgctgttgttgtagagagtgtgagaaatacagaaaaaaaaagccatggcaggagcttgcttatcttcttcttgtttgagtttttctacaaaattcaacaccctttctctcaatggaccacatgctgatgcatttaggtcactcagtttttctgctaacacttctctcaatctgttctctaaagggactgtttcagtgaatccggtgcaaatgccgtttcgtcgttccattgtttgtgaagctgctccaacaaagaaagcggattctgctgctaaaagggcaagacaagctgaaaagaggagaatttaccacaaggctaaaaaatctgaagtcaggactagaattaagactgttttggaagcattggagacattgaggaagaaaactgatgcagagtcagaggaagttgtttcagttgagaagttgattgcagaggcatattctgcaatcgataaagcagttaaagttggaacacttcacaggaacactggtgcgagaagaaaatctcgtcttgctagaagaaagaaagcagttgagattcatcatggctggtatgttcctgctccagccactgaacctgatcttgtagccacagcttgatgtcaatccatatttttcatattcaatgtaaagcagtgacatcttgtggagaattcaacttcctagagtatgatcagatatttttcattcttgatattgtatatgacctttttgtgcaatcaatttctacttctcttttgtttcttcagttaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0066M15-ciJ7w/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C07HBa0066M15.1" temp_strand="+" temp_description="C07HBa0066M15.1  AC217524.2 htgs_phase:2 submitted_to_sgn_as:gi|205277499|gb|AC217524.2| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0066M15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces">
        <position start="45145" stop="126905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45445" g_stop="45636" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45831" g_stop="45997" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="359" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48252" g_stop="48652" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="760" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48653" i_stop="49484" i_length="832">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49485" g_stop="49511" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="787" r_length="27" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0066M15.1" gen_strand="+" ref_id="SGN-M7746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0066M15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45445" e_stop="45636"/>
          <exon e_start="45831" e_stop="45997"/>
          <exon e_start="48252" e_stop="48652"/>
          <exon e_start="49485" e_stop="49511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAGGTATGAACTTCATCTACAATGAACCCATCAGTTCAAGAATCCATTTTTATCTTTTATTTTGATTTTTCAAAGCTTAATCAGTATGGAAATTTTTTTTTTGGGGATCTTCCAATATTTTCAAAAAAAGGAAGTTATTTCAAATTGGTTAGTAGAATTTAGAGTTTATGGTCCTATTGATTTTCTTTGAATTGCAGGGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACTGTAAGTTGCTTTCACTTTTGGGTTTAATTATGTTTAGTTATTAGTTTGAAGTTCGAACTGTCAACTAATTTGTTGGTTTTGCATTGTTCCTATTAGTATTTTTATATAACATGCTTGTTGTGTTCTTCTGTAATGTGGTATTGTGCAATTGATATTTTCCTTTTTAGTTTCACTTGTGGTGTCGAGATAGGCTAGGCAAAGAAATCCCTCCTTGCTTCTCGGTTTGGTTGAAGTTAATCTAAAGATTTGAATGAATTCTGTAAATAATTAAAGGAACATTGAAATGGAGTAAGAATTGTGTGCAGAATACGTCTACCATGAGACAATAGAATTGATCAACCTGTGTCCCTTCCAAAATACTTGTAGAAGCTAGATGAAATTATGTACTTGTTTAGTCAGTAATATATCACGGCAAGCATTTTGATGGATTGTCGGAGTAACTTTTTCTTTGACTATTTAAAATTGTTCCGTTGGTCCTCCTAGCTGAATTTTGTATGAATGGACACATAGAATCTTCAATGATACTGCGTGTTGTCTTTTAGTTTGGAGTGTTAATGGAGTTTGATAGTTCTCTATGGAAGTAGAGAAAACTCAATTTGAGGAAGAGCTTTATTTACATAGAGTCCCTATTTTATGTGAACCTGCTCCGTGAAATGATTTAGCATTGAGATTTTCTTAAGTTCTGATGTTTGTTAATTTATTTTATTTGAGTGCATGTCTAATATTCTCTAGGTCTCATCTTCGGATGTGTGTCATATGGTACACCAAGTCTTATTCAATTTTTCAACGAACAACGGAAGAGCGAGTGGATGAGTGCAGAGTTGGGGTAGTAGTCCATTTTATGTCAATCTTTTTTCCTTTTTGATCTTTAAGGTCTTAGTCACTATTTTTCCCGTAACTGTTGAGACAATAAACTGCTGATGAGTTTTGGATCTTTGAGGCAAAAGTAGGGTCAAAATTGGAACTGCAGAGAATAAACCGAGTTAATTTCAATAAAATAGCGAAGCATTAGGATTGGGAATTTGTGCTAAGCAACTCTTGCATGGTTTCTGTTGTCCTTCATTAAAATATGAGTTAAACATTTGTCAAAATAATTACCTTTTGCACTTACTCTCTGCTCTTAGACATGTATCTTGAATATATGCTAAGGTACTGAAGGTTATAATTTTGGAGCAAAGTACCATTTTCAGTCATGTATTATTCTTAGACGACTCTCTGAAGCTGCAAATACTACCTTCAGTTTCATTTTAGCTAATCCTGTCTATTAGATAATAATGTGAAATATATCCTAATCTATTGGATCAAGATGAAAAATTAAATACAATAACCTCAAAGATTAGTGTTGTGCCTTGGGTTGCAGTGGAGTGTCATGATTCTGCAGTCAGCATGGCTTCAAGCTCTAGCTTTTGAGGCTGGCTCATAGCTTCAATTGTTTAGGCCTATTTGGCGGCTATTAGAGCTCTCTTATGGAGTCAGCATATTTGCTTTCATTTGGTTTCCTTCCGTTCACCTTTTTCCTAATTTTCAGAGTCCTGAAGAGGAATATTGTTTGTCAGGGTCATTGATATTCAGGATGTGGAGATAATTCCCCTTCATAATTTAGTCTTTTGTTACCTCCAGTTATAGACACACGGTGCACTAGGCTAGGTGGTCCCAGAATTTGTATGACTGAACAAATTGAAGATTTTTAGATAGATGAAGCCCTTGTATTACTTAGTTTTTAAGACAAAGAGATGTAAGAAGCTACTCTGATATGCCCTTGCACCATCCGTTGAAGTGAATTGACGAATAGATAAAAATTGCAGACTATAATAAGAGAAGAGAAGGGTCAGTAACTAACAAGAGCTGTTTTTCTCTGAACGGAAACTTGAACTTGAACCAAGATTTGGTTGTACTTGACTGATTAGTGGAGATTTAATGGTGTATTTGAGAGTGATGAAGATTTGCTATTCTGAGAAGTTTGTAATGAAATTATTGTCATTGCTAAATAAAGTAATGTTGATTAAGTTCCATATGCCCGACCTTAGAAATAAACTCAACAGACTCATGGATCTTTTGATAAAAGATAGATTATGGGCATAAGTCAACTTTCATGGACTGTACTTTGCTGCATTTACATGATGAAATTAATAAATTAGAGGAAGATAAGAAGAAGCATTTTAAGAAACGCGTATAAACACATTGAGAAAAAGATATAAGCTATCACCGGCTTCTTCATCTCAGCATATGGAACCTAACCTTTGTTCTTTTCTAGGTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTAGTAATTATGTGTACTTTCATTTTGTTTCTTGAAAATAATGTTGTTGATGTTTAGATTTCAGAGTTTTCCGACTCCGCTTGTGGGATTACAGAAACTCCACTTATGGGATAACAAACGGGCATGTTGTTTAGAATTCAGAGTTCGTGAGAAATAAATCTTCAAATGAACATTTTTGGGACGTTAGAACACACTAATAGTATAAAAAATCTATATATAGAGTGTATAACTTAAATTAGAGTGTTTAAATTAGAGTGTTTTTCCTTGTGTGGATCTAATAAAAACTTGATGAGTCGATGTATTTTCTTTACATATCTTTTTACTAACAATTATATATTTACTTTGTAAATATGAACCCACGTACACAATGTTTTTTTTTTTCGTACATTAAATTCCGCCTACCATAAAAACTGTATAGTATATTGAATAATAAATTAATGAGAACACCTGCTTCATGATCGAGTTTCTTCTAAAATCTAAATAAGAAGGATAACAAAATTGAGTTTAATTAAATACATTTGCATATACTCCTTACGGTTCCAAATTATTATAGTTTTAATAAATTAATTTTGTCTTAAAATATCTGACATCTAAAAAAATTTACTTATTATATCCAAATTTTAACTTTTTTAATTTAATCATTTAATTTAATCAGTAAAGTATTACTAGTGATTAAATAAGTCATTTTGAGAGAAGTAAAGAAAACATAAGATAAACAAATTAATTTTGTCTTAAAATATCTGACATCTAAAAATATTTACTTATTATATTCAAGTTTTAACTTTTTTAATTTAATTAGTAAAGTATTACTAGTGATTATATAAGTCATTTCGAGAGAAATAAATAAAACATAATATAAACA</genome_strand>
        <mrna_strand>TTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG..................................................................................................................................................................................................GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACTCGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13440" PGL_stop="14299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13440" e_stop="14079"/>
            <exon e_start="14112" e_stop="14299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.328" acc_prob="0.630" e_score="0.962"/>
          <exon-only e_score="0.899"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="13440" e_stop="14079" e_length="640"/>
          </exon>
          <intron i_serial="1" don_prob="0.328" acc_prob="0.630">
            <gDNA_intron_boundary i_start="14080" i_stop="14111" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.899">
            <gDNA_exon_boundary e_start="14112" e_stop="14299" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13440" stop="14079"/>
              <exon start="14112" stop="14299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGCAAAGCTGGAAGATATCGAGAGAGGGAAGCTGATCCATTCCTCTATAAGCAAGACACCTGCTCTGTCCAATGTGTTTGTGGGCAGTGCATTGATCAATATGTATGCAAAATGTGGACATCTTCCTGAGGCAATTCAAATATTTGATAACATGCCTGAGAAGAATTTGGTTTCTTGGAAGGCGATGATTGTTGCTTATGCTAAAAACGGGAACTGTGGAGAGGCATTGAAGCTCATGTATCGTATGCAAGTAGAGGGTATTGAGGTGGATGATTATATCCTTGCTACTGTTCTCACAGCATGTGGAGAATATAAGGAAACTATCAAGTCCAAATCGAAGTATTTCTTGCATCCAAATAGTTCTATAACCTAAACAGATATGAGTCTCCTCAAGAAGCTTCAGCGAAATACAACAACATATCCAGTGTAAATGATGGTTTCGTTCATGTCTCAATGACAGCTGAACTCTGAGCGTTTCATGTTAAGAGTCTGGTTCATAGCTATGTCATCGGCTTACTTCTGGACCATGATGGACATGTCTAGTAGCCCCTGCCTCGCCTGATAAAGAATGAGGTACAATTTATCGGACTGTGCTTTTAGAGGTCCATCATATTTGAACGTTGTATCTTCTAACCTCA : TGATACTCTGTATTATACGTAGTTAGGTCCCTACGACCGCGTATTGTCATATTAAGATCATGTATACTTGAACTTTTTCTTAGTGAAGTGATAAAGAAAAGGTTATAACAACAACTATGTGTACTAGATATTTGAATGTTAAAAACATACTAGTAACATTCATGATTGTCTTCAAATTTTTAGCTAAA</gDNA_template>
            <first_frame> C  A  K  L  E  D  I  E  R  G  K  L  I  H  S  S  I  S  K  T  P  A  L  S  N  V  F  V  G  S  A  L  I  N  M  Y  A  K  C  G  H  L  P  E  A  I  Q  I  F  D  N  M  P  E  K  N  L  V  S  W  K  A  M  I  V  A  Y  A  K  N  G  N  C  G  E  A  L  K  L  M  Y  R  M  Q  V  E  G  I  E  V  D  D  Y  I  L  A  T  V  L  T  A  C  G  E  Y  K  E  T  I  K  S  K  S  K  Y  F  L  H  P  N  S  S  I  T  *  T  D  M  S  L  L  K  K  L  Q  R  N  T  T  T  Y  P  V  *  M  M  V  S  F  M  S  Q  *  Q  L  N  S  E  R  F  M  L  R  V  W  F  I  A  M  S  S  A  Y  F  W  T  M  M  D  M  S  S  S  P  C  L  A  *  *  R  M  R  Y  N  L  S  D  C  A  F  R  G  P  S  Y  L  N  V  V  S  S  N  L   : M  I  L  C  I  I  R  S  *  V  P  T  T  A  Y  C  H  I  K  I  M  Y  T  *  T  F  S  *  *  S  D  K  E  K  V  I  T  T  T  M  C  T  R  Y  L  N  V  K  N  I  L  V  T  F  M  I  V  F  K  F  L  A  K </first_frame>
            <second_frame>  V  Q  S  W  K  I  S  R  E  G  S  *  S  I  P  L  *  A  R  H  L  L  C  P  M  C  L  W  A  V  H  *  S  I  C  M  Q  N  V  D  I  F  L  R  Q  F  K  Y  L  I  T  C  L  R  R  I  W  F  L  G  R  R  *  L  L  L  M  L  K  T  G  T  V  E  R  H  *  S  S  C  I  V  C  K  *  R  V  L  R  W  M  I  I  S  L  L  L  F  S  Q  H  V  E  N  I  R  K  L  S  S  P  N  R  S  I  S  C  I  Q  I  V  L  *  P  K  Q  I  *  V  S  S  R  S  F  S  E  I  Q  Q  H  I  Q  C  K  *  W  F  R  S  C  L  N  D  S  *  T  L  S  V  S  C  *  E  S  G  S  *  L  C  H  R  L  T  S  G  P  *  W  T  C  L  V  A  P  A  S  P  D  K  E  *  G  T  I  Y  R  T  V  L  L  E  V  H  H  I  *  T  L  Y  L  L  T  S  :  *  Y  S  V  L  Y  V  V  R  S  L  R  P  R  I  V  I  L  R  S  C  I  L  E  L  F  L  S  E  V  I  K  K  R  L  *  Q  Q  L  C  V  L  D  I  *  M  L  K  T  Y  *  *  H  S  *  L  S  S  N  F  *  L   </second_frame>
            <third_frame>   C  K  A  G  R  Y  R  E  R  E  A  D  P  F  L  Y  K  Q  D  T  C  S  V  Q  C  V  C  G  Q  C  I  D  Q  Y  V  C  K  M  W  T  S  S  *  G  N  S  N  I  *  *  H  A  *  E  E  F  G  F  L  E  G  D  D  C  C  L  C  *  K  R  E  L  W  R  G  I  E  A  H  V  S  Y  A  S  R  G  Y  *  G  G  *  L  Y  P  C  Y  C  S  H  S  M  W  R  I  *  G  N  Y  Q  V  Q  I  E  V  F  L  A  S  K  *  F  Y  N  L  N  R  Y  E  S  P  Q  E  A  S  A  K  Y  N  N  I  S  S  V  N  D  G  F  V  H  V  S  M  T  A  E  L  *  A  F  H  V  K  S  L  V  H  S  Y  V  I  G  L  L  L  D  H  D  G  H  V  *  *  P  L  P  R  L  I  K  N  E  V  Q  F  I  G  L  C  F  *  R  S  I  I  F  E  R  C  I  F  *  P  H :   D  T  L  Y  Y  T  *  L  G  P  Y  D  R  V  L  S  Y  *  D  H  V  Y  L  N  F  F  L  V  K  *  *  R  K  G  Y  N  N  N  Y  V  Y  *  I  F  E  C  *  K  H  T  S  N  I  H  D  C  L  Q  I  F  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13440" stop="13814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CAKLEDIERGKLIHSSISKTPALSNVFVGSALINMYAKCGHLPEAIQIFDNMPEKNLVSWKAMIVAYAKNGNCGEALKLMYRMQVEGIEVDDYILATVLTACGEYKETIKSKSKYFLHPNSSIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="30339" PGL_stop="36893"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30339" e_stop="30467"/>
            <exon e_start="30551" e_stop="30614"/>
            <exon e_start="31508" e_stop="31616"/>
            <exon e_start="32744" e_stop="32806"/>
            <exon e_start="33366" e_stop="33463"/>
            <exon e_start="34483" e_stop="34549"/>
            <exon e_start="34672" e_stop="34743"/>
            <exon e_start="35658" e_stop="35819"/>
            <exon e_start="36656" e_stop="36729"/>
            <exon e_start="36833" e_stop="36893"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.636" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.616" e_score="1.000"/>
          <exon-intron don_prob="0.298" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.703" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.096" acc_prob="0.993" e_score="0.973"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30339" e_stop="30467" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.970">
            <gDNA_intron_boundary i_start="30468" i_stop="30550" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30551" e_stop="30614" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30615" i_stop="31507" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31508" e_stop="31616" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.636" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31617" i_stop="32743" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32744" e_stop="32806" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.616">
            <gDNA_intron_boundary i_start="32807" i_stop="33365" i_length="559"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33366" e_stop="33463" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.298" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33464" i_stop="34482" i_length="1019"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="34483" e_stop="34549" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.992">
            <gDNA_intron_boundary i_start="34550" i_stop="34671" i_length="122"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34672" e_stop="34743" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.703">
            <gDNA_intron_boundary i_start="34744" i_stop="35657" i_length="914"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="35658" e_stop="35819" e_length="162"/>
          </exon>
          <intron i_serial="8" don_prob="0.932" acc_prob="0.972">
            <gDNA_intron_boundary i_start="35820" i_stop="36655" i_length="836"/>
          </intron>
          <exon e_serial="9" e_score="0.973">
            <gDNA_exon_boundary e_start="36656" e_stop="36729" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.096" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36730" i_stop="36832" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36833" e_stop="36893" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30339" stop="30467"/>
              <exon start="30551" stop="30614"/>
              <exon start="31508" stop="31616"/>
              <exon start="32744" stop="32806"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34743"/>
              <exon start="35658" stop="35819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30447" stop="30467"/>
              <exon start="30551" stop="30614"/>
              <exon start="31508" stop="31616"/>
              <exon start="32744" stop="32806"/>
              <exon start="33366" stop="33463"/>
              <exon start="34483" stop="34549"/>
              <exon start="34672" stop="34743"/>
              <exon start="35658" stop="35819"/>
              <exon start="36656" stop="36729"/>
              <exon start="36833" stop="36893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7745-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATCTTTTTCCTCACCGTCTGCAACATCTTTTTTCTCTCTCTCTGATACACTAACAATGGCGGAAGAGTACTCTGTGGATCCGGCGCAGTTACTGGAAGCAGCTACTGACTTTGCGTATCATCCTG : GCGCTCTTTCCGATGCTTCAGCTCAAGACTTTCTTAATCGATTTCCTCTTCCAGCCATTATCAA : TGCTTTGCAAACAAAAGCAGATTACCCTGGCCTAGAAAGTGCTTTGGTTGATTGTTTAGAGAAGCTTTTCAAAACAAGATATGGAGCATCACTCATTCCACACTACATG : CCATTTGTTATTGTCGGTCTCGGTGCAGAGTCTCAGAAAGTCAGACGCTTAGCATGCCAAACT : GTATCCTGCCTGTTGGAGAATATTGATGAAGCACTTGTTATACAACTAATTCATGAGTATGGAGTTTATCAACTTTTGCTTAATTGCCTCATAAGTGG : GGATGCGGAAGTTGCTGCTGCATCTACAGATGCAATTAGGAAACTGGCTAGCCATTCGAAAGGCATT : GATATCATATTTCCTGAAAGCGGCAATGAAGCGACAAACCTCTTGAACTTCGCAACCAACTGTGCACCTCTG : GGACGAGTTCGTGTTTTAGCTTTGATAGTGAAGTTATTCTCCATTTCCACTTCTGTGGCATCAAGAGTCTACAGCTCAAATCTTCTTAGCTTGTTGGAGACAGAAATCAGCAATTCAGATGATACATTAGTCACTTCGAGCAGCTTGGAACTCCTATATGAG : TTGGCTGATGTTGAGCACAGCACTGAGTTCTTGTCAAGGACTAAGTTTCTCCAAATTCTTACTTCTATTATTAG : TGATGCTTCTGCTGAATCGATTTTGCGATCAAGAGCAATGATGATAACTGGAAGGCTGATG</gDNA_template>
            <first_frame> S  H  L  F  P  H  R  L  Q  H  L  F  S  L  S  L  I  H  *  Q  W  R  K  S  T  L  W  I  R  R  S  Y  W  K  Q  L  L  T  L  R  I  I  L  :  A  L  F  P  M  L  Q  L  K  T  F  L  I  D  F  L  F  Q  P  L  S   : M  L  C  K  Q  K  Q  I  T  L  A  *  K  V  L  W  L  I  V  *  R  S  F  S  K  Q  D  M  E  H  H  S  F  H  T  T  C :   H  L  L  L  S  V  S  V  Q  S  L  R  K  S  D  A  *  H  A  K  L :   Y  P  A  C  W  R  I  L  M  K  H  L  L  Y  N  *  F  M  S  M  E  F  I  N  F  C  L  I  A  S  *  V   : G  M  R  K  L  L  L  H  L  Q  M  Q  L  G  N  W  L  A  I  R  K  A  L :   I  S  Y  F  L  K  A  A  M  K  R  Q  T  S  *  T  S  Q  P  T  V  H  L  W :   D  E  F  V  F  *  L  *  *  *  S  Y  S  P  F  P  L  L  W  H  Q  E  S  T  A  Q  I  F  L  A  C  W  R  Q  K  S  A  I  Q  M  I  H  *  S  L  R  A  A  W  N  S  Y  M  S :   W  L  M  L  S  T  A  L  S  S  C  Q  G  L  S  F  S  K  F  L  L  L  L  L   : V  M  L  L  L  N  R  F  C  D  Q  E  Q  *  *  *  L  E  G  *   </first_frame>
            <second_frame>  L  I  F  F  L  T  V  C  N  I  F  F  L  S  L  *  Y  T  N  N  G  G  R  V  L  C  G  S  G  A  V  T  G  S  S  Y  *  L  C  V  S  S  W :   R  S  F  R  C  F  S  S  R  L  S  *  S  I  S  S  S  S  H  Y  Q  :  C  F  A  N  K  S  R  L  P  W  P  R  K  C  F  G  *  L  F  R  E  A  F  Q  N  K  I  W  S  I  T  H  S  T  L  H   : A  I  C  Y  C  R  S  R  C  R  V  S  E  S  Q  T  L  S  M  P  N   : C  I  L  P  V  G  E  Y  *  *  S  T  C  Y  T  T  N  S  *  V  W  S  L  S  T  F  A  *  L  P  H  K  W  :  G  C  G  S  C  C  C  I  Y  R  C  N  *  E  T  G  *  P  F  E  R  H   : *  Y  H  I  S  *  K  R  Q  *  S  D  K  P  L  E  L  R  N  Q  L  C  T  S   : G  T  S  S  C  F  S  F  D  S  E  V  I  L  H  F  H  F  C  G  I  K  S  L  Q  L  K  S  S  *  L  V  G  D  R  N  Q  Q  F  R  *  Y  I  S  H  F  E  Q  L  G  T  P  I  *   : V  G  *  C  *  A  Q  H  *  V  L  V  K  D  *  V  S  P  N  S  Y  F  Y  Y  *  :  *  C  F  C  *  I  D  F  A  I  K  S  N  D  D  N  W  K  A  D  </second_frame>
            <third_frame>   S  S  F  S  S  P  S  A  T  S  F  F  S  L  S  D  T  L  T  M  A  E  E  Y  S  V  D  P  A  Q  L  L  E  A  A  T  D  F  A  Y  H  P   : G  A  L  S  D  A  S  A  Q  D  F  L  N  R  F  P  L  P  A  I  I  N :   A  L  Q  T  K  A  D  Y  P  G  L  E  S  A  L  V  D  C  L  E  K  L  F  K  T  R  Y  G  A  S  L  I  P  H  Y  M  :  P  F  V  I  V  G  L  G  A  E  S  Q  K  V  R  R  L  A  C  Q  T  :  V  S  C  L  L  E  N  I  D  E  A  L  V  I  Q  L  I  H  E  Y  G  V  Y  Q  L  L  L  N  C  L  I  S  G :   D  A  E  V  A  A  A  S  T  D  A  I  R  K  L  A  S  H  S  K  G  I  :  D  I  I  F  P  E  S  G  N  E  A  T  N  L  L  N  F  A  T  N  C  A  P  L  :  G  R  V  R  V  L  A  L  I  V  K  L  F  S  I  S  T  S  V  A  S  R  V  Y  S  S  N  L  L  S  L  L  E  T  E  I  S  N  S  D  D  T  L  V  T  S  S  S  L  E  L  L  Y  E  :  L  A  D  V  E  H  S  T  E  F  L  S  R  T  K  F  L  Q  I  L  T  S  I  I  S :   D  A  S  A  E  S  I  L  R  S  R  A  M  M  I  T  G  R  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30341" stop="30467"/>
                    <exon start="30551" stop="30614"/>
                    <exon start="31508" stop="31616"/>
                    <exon start="32744" stop="32806"/>
                    <exon start="33366" stop="33463"/>
                    <exon start="34483" stop="34549"/>
                    <exon start="34672" stop="34743"/>
                    <exon start="35658" stop="35819"/>
                    <exon start="36656" stop="36729"/>
                    <exon start="36833" stop="36893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSFSSPSATSFFSLSDTLTMAEEYSVDPAQLLEAATDFAYHPGALSDASAQDFLNRFPLPAIINALQTKADYPGLESALVDCLEKLFKTRYGASLIPHYMPFVIVGLGAESQKVRRLACQTVSCLLENIDEALVIQLIHEYGVYQLLLNCLISGDAEVAAASTDAIRKLASHSKGIDIIFPESGNEATNLLNFATNCAPLGRVRVLALIVKLFSISTSVASRVYSSNLLSLLETEISNSDDTLVTSSSLELLYELADVEHSTEFLSRTKFLQILTSIISDASAESILRSRAMMITGRLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45445" PGL_stop="49511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45445" e_stop="45636"/>
            <exon e_start="45831" e_stop="45997"/>
            <exon e_start="48252" e_stop="48652"/>
            <exon e_start="49485" e_stop="49511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45445" e_stop="45636" e_length="192"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45637" i_stop="45830" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45831" e_stop="45997" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.947" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45998" i_stop="48251" i_length="2254"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48252" e_stop="48652" e_length="401"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48653" i_stop="49484" i_length="832"/>
          </intron>
          <exon e_serial="4" e_score="0.630">
            <gDNA_exon_boundary e_start="49485" e_stop="49511" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45445" stop="45636"/>
              <exon start="45831" stop="45997"/>
              <exon start="48252" stop="48652"/>
              <exon start="49485" stop="49511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGCTTTTGCTGTTGTTGTAGAGAGTGTGAGAAATACAGAAAAAAAAAGCCATGGCAGGAGCTTGCTTATCTTCTTCTTGTTTGAGTTTTTCTACAAAATTCAACACCCTTTCTCTCAATGGACCACATGCTGATGCATTTAGGTCACTCAGTTTTTCTGCTAACACTTCTCTCAATCTGTTCTCTAAAG : GGACTGTTTCAGTGAATCCGGTGCAAATGCCGTTTCGTCGTTCCATTGTTTGTGAAGCTGCTCCAACAAAGAAAGCGGATTCTGCTGCTAAAAGGGCAAGACAAGCTGAAAAGAGGAGAATTTACCACAAGGCTAAAAAATCTGAAGTCAGGACTAGAATTAAGACT : GTTTTGGAAGCATTGGAGACATTGAGGAAGAAAACTGATGCAGAGTCAGAGGAAGTTGTTTCAGTTGAGAAGTTGATTGCAGAGGCATATTCTGCAATCGATAAAGCAGTTAAAGTTGGAACACTTCACAGGAACACTGGTGCGAGAAGAAAATCTCGTCTTGCTAGAAGAAAGAAAGCAGTTGAGATTCATCATGGCTGGTATGTTCCTGCTCCAGCCACTGAACCTGATCTTGTAGCCACAGCTTGATGTCAATCCATATTTTTCATATTCAATGTAAAGCAGTGACATCTTGTGGAGAATTCAACTTCCTAGAGTATGATCAGATATTTTTCATTCTTGATATTGTATATGACCTTTTTGTGCAATCAATTTCTACTTCTCTTTTGTTTCTTCAGTTA : AGAAATAAATAAAACATAATATAAACA</gDNA_template>
            <first_frame> F  S  F  C  C  C  C  R  E  C  E  K  Y  R  K  K  K  P  W  Q  E  L  A  Y  L  L  L  V  *  V  F  L  Q  N  S  T  P  F  L  S  M  D  H  M  L  M  H  L  G  H  S  V  F  L  L  T  L  L  S  I  C  S  L  K  :  G  L  F  Q  *  I  R  C  K  C  R  F  V  V  P  L  F  V  K  L  L  Q  Q  R  K  R  I  L  L  L  K  G  Q  D  K  L  K  R  G  E  F  T  T  R  L  K  N  L  K  S  G  L  E  L  R  L :   F  W  K  H  W  R  H  *  G  R  K  L  M  Q  S  Q  R  K  L  F  Q  L  R  S  *  L  Q  R  H  I  L  Q  S  I  K  Q  L  K  L  E  H  F  T  G  T  L  V  R  E  E  N  L  V  L  L  E  E  R  K  Q  L  R  F  I  M  A  G  M  F  L  L  Q  P  L  N  L  I  L  *  P  Q  L  D  V  N  P  Y  F  S  Y  S  M  *  S  S  D  I  L  W  R  I  Q  L  P  R  V  *  S  D  I  F  H  S  *  Y  C  I  *  P  F  C  A  I  N  F  Y  F  S  F  V  S  S  V   : K  K  *  I  K  H  N  I  N  </first_frame>
            <second_frame>  S  A  F  A  V  V  V  E  S  V  R  N  T  E  K  K  S  H  G  R  S  L  L  I  F  F  L  F  E  F  F  Y  K  I  Q  H  P  F  S  Q  W  T  T  C  *  C  I  *  V  T  Q  F  F  C  *  H  F  S  Q  S  V  L  *  R :   D  C  F  S  E  S  G  A  N  A  V  S  S  F  H  C  L  *  S  C  S  N  K  E  S  G  F  C  C  *  K  G  K  T  S  *  K  E  E  N  L  P  Q  G  *  K  I  *  S  Q  D  *  N  *  D   : C  F  G  S  I  G  D  I  E  E  E  N  *  C  R  V  R  G  S  C  F  S  *  E  V  D  C  R  G  I  F  C  N  R  *  S  S  *  S  W  N  T  S  Q  E  H  W  C  E  K  K  I  S  S  C  *  K  K  E  S  S  *  D  S  S  W  L  V  C  S  C  S  S  H  *  T  *  S  C  S  H  S  L  M  S  I  H  I  F  H  I  Q  C  K  A  V  T  S  C  G  E  F  N  F  L  E  Y  D  Q  I  F  F  I  L  D  I  V  Y  D  L  F  V  Q  S  I  S  T  S  L  L  F  L  Q  L  :  R  N  K  *  N  I  I  *  T </second_frame>
            <third_frame>   Q  L  L  L  L  L  *  R  V  *  E  I  Q  K  K  K  A  M  A  G  A  C  L  S  S  S  C  L  S  F  S  T  K  F  N  T  L  S  L  N  G  P  H  A  D  A  F  R  S  L  S  F  S  A  N  T  S  L  N  L  F  S  K   : G  T  V  S  V  N  P  V  Q  M  P  F  R  R  S  I  V  C  E  A  A  P  T  K  K  A  D  S  A  A  K  R  A  R  Q  A  E  K  R  R  I  Y  H  K  A  K  K  S  E  V  R  T  R  I  K  T  :  V  L  E  A  L  E  T  L  R  K  K  T  D  A  E  S  E  E  V  V  S  V  E  K  L  I  A  E  A  Y  S  A  I  D  K  A  V  K  V  G  T  L  H  R  N  T  G  A  R  R  K  S  R  L  A  R  R  K  K  A  V  E  I  H  H  G  W  Y  V  P  A  P  A  T  E  P  D  L  V  A  T  A  *  C  Q  S  I  F  F  I  F  N  V  K  Q  *  H  L  V  E  N  S  T  S  *  S  M  I  R  Y  F  S  F  L  I  L  Y  M  T  F  L  C  N  Q  F  L  L  L  F  C  F  F  S  * :   E  I  N  K  T  *  Y  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0066M15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45477" stop="45636"/>
                    <exon start="45831" stop="45997"/>
                    <exon start="48252" stop="48500"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIQKKKAMAGACLSSSCLSFSTKFNTLSLNGPHADAFRSLSFSANTSLNLFSKGTVSVNPVQMPFRRSIVCEAAPTKKADSAAKRARQAEKRRIYHKAKKSEVRTRIKTVLEALETLRKKTDAESEEVVSVEKLIAEAYSAIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYVPAPATEPDLVATA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 33 chains have been computed
$ 
$ memory statistics:
$ 161696 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 40424 bytes was the average size of a spliced alignment
$ 8296 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2765 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 34 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-06 20:32:09
-->
