<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 18:24:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E248489" ref_strand="+" ref_description="SGN-E248489 [cLEF-59-L14]">
      <seq>aatatgtgctgagccagatccctcgaagaatttgatgaagccaattacctaaaacagtagattgttggtctgacgattactttgttttagaacctgtttatgttgattttttaaagtgctcttaagctagctctcaagtttcttaagtaaattaagaagtgtttataaactatgttgcacggacccttcaaaaatgactacatgtacgggtcagatactctaaaagtagtgcattttgtagaatctgaatgggtgtggcaagaatttcggagagtccaagcaacctggtttttttaagcacttggtttaagctaaaatgctaaaaatatatgaaaagccacaagttagagtttcttactttagacttttggcttataagttaaaaaaacgaaaagcaattgaatcaagcttagttttggatggatgtgcatgtctcattttgatcattcatagcttagggtgcttgcatcctatcttattgaaagttgaagtggtgcttacttgtttgtgcaggaacaacagtcctatagtactttctttctttttctattttctctatctttactgtcacttaaaatattttgttttggtaatcaagatctattttgtttattatctctcatgttattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="5184" stop="6415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5484" g_stop="6115" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E248489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5484" e_stop="6115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTGCTGAGCCAGATCCCTCGAAGAATTTGATGAAGCCAATTACCTAAAACAGTAGATTGTTGGTCTGACGATTACTTTGTTTTAGAACCTGTTTATGTTGATTTTTTAAAGTGCTCTTAAGCTAGCTCTCAAGTTTCTTAAGTAAATTAAGAAGTGTTTATAAACTATGTTGCACGGACCCTTCAAAAATGACTACATGTACGGGTCAGATACTCTAAAAGTAGTGCATTTTGTAGAATCTGAATGGGTGTGGCAAGAATTTCGGAGAGTCCAAGCAACCTGGTTTTTTTAAGCACTTGGTTTAAGCTAAAATGCTAAAAATATATGAAAAGCCACAAGTTAGAGTTTCTTACTTTAGACTTTTGGCTTATAAGTTAAAAAAACGAAAAGCAATTGAATCAAGCTTAGTTTTGGATGGATGTGCATGTCTCATTTTGATCATTCATAGCTTAGGGTGCTTGCATCCTATCTTATTGAAAGTTGAAGTGGTGCTTACTTGTTTGTGCAGGAACAACAGTCCTATAGTACTTTCTTTCTTTTTCTATTTTCTCTATCTTTACTGTCACTTAAAATATTTTGTTTTGGTAATCAAGATCTATTTTGTTTATTATCTCTCATGTTATTAGT</genome_strand>
        <mrna_strand>AATATGTGCTGAGCCAGATCCCTCGAAGAATTTGATGAAGCCAATTACCTAAAACAGTAGATTGTTGGTCTGACGATTACTTTGTTTTAGAACCTGTTTATGTTGATTTTTTAAAGTGCTCTTAAGCTAGCTCTCAAGTTTCTTAAGTAAATTAAGAAGTGTTTATAAACTATGTTGCACGGACCCTTCAAAAATGACTACATGTACGGGTCAGATACTCTAAAAGTAGTGCATTTTGTAGAATCTGAATGGGTGTGGCAAGAATTTCGGAGAGTCCAAGCAACCTGGTTTTTTTAAGCACTTGGTTTAAGCTAAAATGCTAAAAATATATGAAAAGCCACAAGTTAGAGTTTCTTACTTTAGACTTTTGGCTTATAAGTTAAAAAAACGAAAAGCAATTGAATCAAGCTTAGTTTTGGATGGATGTGCATGTCTCATTTTGATCATTCATAGCTTAGGGTGCTTGCATCCTATCTTATTGAAAGTTGAAGTGGTGCTTACTTGTTTGTGCAGGAACAACAGTCCTATAGTACTTTCTTTCTTTTTCTATTTTCTCTATCTTTACTGTCACTTAAAATATTTTGTTTTGGTAATCAAGATCTATTTTGTTTATTATCTCTCATGTTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E244143" ref_strand="+" ref_description="SGN-E244143 [cLEE-1-E10]">
      <seq>aaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttggtacttgcatacattgaccttgtggtcataaagactagtaattttgtaccatttcttcttgagatccctccaagctaaatctctctcatgatgagaatgtgttttcctatcagcaagtttgtttcggaatcaaaaactccagcaagtcttaggatgattgatatcaaccaatgtatggggaaaaaaaaaacgcttaggtaaaaagcttgattggaactgtagtgaggagatttcaattttatgacttctacatgtggaattttatttagaaaaacctccctacaacattcttagatgaacaagtagattgatttaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="7761" stop="6752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7461" g_stop="7055" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="423"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E244143" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7461" e_stop="7055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTTGTTTCGGAATCAAAAACTCCAGCAAGTCTTAGGATGATTGATATCAACCAATGTATGGGGAAAAAAAAAACGCTTAGGTAAAAAGCTTGATTGGAACTGTAGTGAGGAGATTTCAATTTTATGACTTCTACATGTGGAATTTTATTTAGAAAAACCTCCCTACAACATTCTTAGATGAACAAGTAGATTGATTTA</genome_strand>
        <mrna_strand>AAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTTGTTTCGGAATCAAAAACTCCAGCAAGTCTTAGGATGATTGATATCAACCAATGTATGGGGAAAAAAAAAACGCTTAGGTAAAAAGCTTGATTGGAACTGTAGTGAGGAGATTTCAATTTTATGACTTCTACATGTGGAATTTTATTTAGAAAAACCTCCCTACAACATTCTTAGATGAACAAGTAGATTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E356789" ref_strand="+" ref_description="SGN-E356789 [cTOS-21-F4]">
      <seq>gaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgatgtttagcaggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaagagacggaatactccggtggaaagaaaagcatgattcagtaaaagaagaaaatggtaatggaaccactgatgaatcccatactgcttcccgtcatagggcggaaaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttgggtacttgcatacattgaccttgtggtcataaagactagtaattttgtaccatttcttcttgagatccccctccagctaatctctctcatgatgagaatgtgttttcctatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11365" stop="6954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11065" g_stop="11014" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7781" i_length="3233">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7780" g_stop="7250" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="586" r_length="534" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E356789" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11065" e_stop="11014"/>
          <exon e_start="7780" e_stop="7250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGT-GAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATA-GGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTT-GGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTC-CAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTT</genome_strand>
        <mrna_strand>GAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAAGAGACGGAATACTCCGGTGGAAAGAAAAGCATGATTCAGTAAAAGAAGAAAATGGTAATGGAACCACTGATGAATCCCATACTGCTTCCCGTCATAGGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCCCTCCAGCT-AATCTCTCTCATGATGAGAATGTGTTTTCCTATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E357869" ref_strand="+" ref_description="SGN-E357869 [cTOS-24-D1]">
      <seq>gaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgatgtttagcaggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaggagacggaatactcgggtgaaagaaaagcatgattcagtaaaagaggaaaatggtaatggaacaactgatgaatccaatactgcttcccgtcataggcggaaaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttggtacttgcatacattgaccttgtggtcataaagactagtaattttgtaccatttcttcttgagatccctccaagctaaatctctctcatgatgagaatgtgttttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11365" stop="6960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11065" g_stop="11014" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7781" i_length="3233">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7780" g_stop="7260" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="573" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E357869" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11065" e_stop="11014"/>
          <exon e_start="7780" e_stop="7260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTAT</genome_strand>
        <mrna_strand>GAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E350579" ref_strand="+" ref_description="SGN-E350579 [cTOS-5-L19]">
      <seq>gagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgcaggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaggagacggaatactcgggtgaaagaaaagcatgattcagtaaaagaggaaaatggtaatggaacaactgatgaatccaatactgcttcccgtcataggcggaaaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttggtacttgcatacattgaccttgtggtcataaagactagtaattttgtaccatttcttcttgagatccctccaagctaaatctctctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11533" stop="6973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11233" g_stop="11014" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7773" i_length="3241">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7772" g_stop="7283" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="710" r_length="490" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="727"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E350579" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11233" e_stop="11014"/>
          <exon e_start="7772" e_stop="7283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTC</genome_strand>
        <mrna_strand>GAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E350082" ref_strand="+" ref_description="SGN-E350082 [cTOS-4-B8]">
      <seq>gaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaggagacggaatactcgggtgaaagaaaagcatgattcagtaaaagaggaaaatggtaatggaacaactgatgaatccaatactgcttcccgtcataggcggaaaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttggtacttgcatacattgaccttgtggtcataaagactagtaattttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="8049" stop="7021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7749" g_stop="7321" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E350082" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7749" e_stop="7321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTAC</genome_strand>
        <mrna_strand>GAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E351435" ref_strand="+" ref_description="SGN-E351435 [cTOS-12-N1]">
      <seq>gaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaggagacggaatactcgggtgaaagaaaagcatgattcagtaaaagaggaaaatggtaatggaacaactgatgaatccaatactgcttcccgtcataggcggaaaaacaagcctcgccgtgctgcagaagctggtgttgagtgcaactgaccaccactttgtttctgttacactgtaaatccccctctcgttttggtacttgcatacattgaccttgtggtcataaagactagtaattttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="8049" stop="7021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7749" g_stop="7321" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E351435" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7749" e_stop="7321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTAC</genome_strand>
        <mrna_strand>GAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTGAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E343625" ref_strand="+" ref_description="SGN-E343625 [cTOF-20-J23]">
      <seq>ttttccactcttctttagctctcctctctctctgttccatgtttctttttctgctgatggaggagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgcaggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgagcttggaattcaaaacttggagatcaatgggaacaagaggagacggaatactcgggtgaaagaaaagcatgattcagtaaaagaggaaaatggtaatggaacaactgatgaatccaatactgctttcccgtcataggcggaaaaacaagcctcgccgtgctgcaaagcctggtgttgagtgcaactgaccaccactttgntttctgttacactgtaaatccccctctcgttttggtacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11595" stop="7062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11295" g_stop="11014" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7773" i_length="3241">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7772" g_stop="7362" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="695" r_length="413" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E343625" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11295" e_stop="11014"/>
          <exon e_start="7772" e_stop="7362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGC-TTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTG-TTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGC</genome_strand>
        <mrna_strand>TTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAAAGCCTGGTGTTGAGTGCAACTGACCACCACTTTGNTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E324127" ref_strand="+" ref_description="SGN-E324127 [cTOC-4-A23]">
      <seq>gtttagctctcctctctctctgttccatgtttctttttctgctgagggaggagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattcttgacttggaattcaaaacttggagatcaatgggaacaagaggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11582" stop="7258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11283" g_stop="11014" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7770" i_length="3244">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7769" g_stop="7558" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="482" r_length="212" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E324127" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11283" e_stop="11014"/>
          <exon e_start="7769" e_stop="7558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGAC</genome_strand>
        <mrna_strand>GTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGAGGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTTGACTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E311909" ref_strand="+" ref_description="SGN-E311909 [cTOA-15-O2]">
      <seq>tagctctcctctctctctgttccatgtttctttttctgctgatggaggagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgcaagcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccctccacagaagaggagaggaaggccaacaaaatcactcaaagatgacattgatgaagaagcagttgagatgattgaagaggaggatgattctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11580" stop="7301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11280" g_stop="11014" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7773" i_length="3241">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7772" g_stop="7601" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="439" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E311909" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11280" e_stop="11014"/>
          <exon e_start="7772" e_stop="7601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAG</genome_strand>
        <mrna_strand>TAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E391965" ref_strand="+" ref_description="SGN-E391965 [TUS-27-N8]">
      <seq>attgggaggaccatactctctccttatgtagctaagttaactcacacttgcagcctctacacaagcgttgagcaaatatccttttccactcttctttagctctcctctctctctgttccagtgtttctttttctgctgatggaggagctctactgtcatctcagttgacgaccgatacttcatttttatgaactttctgtatttgggttgcaagctattctggatatgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattccaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagggagacaattggcaaaagggtgcgaggtagaggaaagggtaagaaattgactgatgatcaatgaagtgatgacgaagaaaagatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11676" stop="7394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11376" g_stop="11014" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7770" i_length="3244">
            <donor d_prob="0.960" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7769" g_stop="7694" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="441" r_length="77" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E391965" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11376" e_stop="11014"/>
          <exon e_start="7769" e_stop="7694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGAGTACCATACTCTCTCCTTATGTAGCTAAGTTAACTCACACTTGCAGCCTCTACACAACCGTTGAGCAAATATCCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCA-TGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGT-CGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCT</genome_strand>
        <mrna_strand>ATTGGGAGGACCATACTCTCTCCTTATGTAGCTAAGTTAACTCACACTTGCAGCCTCTACACAAGCGTTGAGCAAATATCCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCAGTGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCGATACTTCATTTTTATGAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATATGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCCAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGGGAGACAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGGTGCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCAATGAAGTGATGACGAAGAAAAGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E271408" ref_strand="+" ref_description="SGN-E271408 [cLEM-5-K14]">
      <seq>ttgggagtaccatactctctccttatgtagctaagttaactcacacttgcagcctctacacaaccgttgagcaaatatccttttccactcttctttagctctcctctctctctgttccatgtttctttttctgctgatggaggagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttggcaaatgggtcgaggtagaggaaagggtaagaaattgactgatgatccaggaagtgatgaggaagaaaagatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11675" stop="7395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11375" g_stop="11014" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11013" i_stop="7770" i_length="3244">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7769" g_stop="7695" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="437" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E271408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11375" e_stop="11014"/>
          <exon e_start="7769" e_stop="7695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGAGTACCATACTCTCTCCTTATGTAGCTAAGTTAACTCACACTTGCAGCCTCTACACAACCGTTGAGCAAATATCCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTGGTGAGTACCCATCTATCAGTTTTTGGTTTCTCCCACTGTGTCTTTTGATTTTTATAAGAGTTGATGGTGATTTCTGTTCTAATCTTTTGGATCTAATTTCTCTTTTGTTAGTTTGGATTTGCATGTTTGTGTTGATGTTCAATGAGATCTCATTTGTGACTGTAAAGTGATTCGTTTAACTCAAATCCTTCTAATAGAGTGTAAAGGGTGTATTGCTTTCTTGATTTTGCTTCTGATGGGGATGTAGGGTACTATTACTGGTTAATTAGCAATATGTGTCTGTCTTACAGTGAGTCTTCAGTTTACAAATGGAGGAATGTTTACCAGATGTAGAAATTGAGGCTTCTGTGGCTTTGTCTGCAAGAGTTAGATTTTTTGATTCAGTACTCTTGAATCAGTAGGACTGACTTGCTGTCTCTCCAGATCTTTGCAGGATGATAAAGAACTCAATTTTGAATTGTTTTTATATCTTTTTGTGGTTAGGAATGGGAATTTGATCATCTCGTGTTCGTGGTTGTATGAACAAGATTGATGTTAAAGGTTGCGCTTTTGGGTTTTGAATTGGGTTCTATTGTATTTGACTATGTTATCTTACAGTCTTACAATTGCAGATTCCAGTAAAATATCGAAAATCAACACATGTAAGAGTGTTTCTATTTGAGACTTCCTTTTGGACATGAAATTGTACCTCTTATCCCCAATCAACCTGTCTGTAAGCGGTTTTGGCTTGTTACTACAAAAATGCTTGAAAGACAAGTTGCTGCAACCGTGCAAGCAAATTCATGCATTAATGTTAACATCACACACTGACATGAATGCTTTGTCATTGAATTCCAAGCTCATCGGTGCCTACGCAAGTTGCGGGGATCTAGGTTCTGCTGAGCTTGTGTTCCAAAGAACAACAAACCTGAATATTTTTGCATTTAATTGGATGATTTCAGCTTTAGCATTCCATGGCTACCCTGAGAAATCCATTGGGTACTTCTCTCTTCTTCAACAATCAAGAACTATTCCGAACAAGTACACATTTGCTTTAGTGTTAAAAGTATGTGTTGGTCTAATGGATCTGAACAAAGGAAAGGAAGTGCAGAGTATGATATATAGAATGGGATTTGAGTCAGAGCTATCGGTTGCCAATTCCTTGATTAATATGTATGGCAAATGTGGCAGTACGGAATATGCTCGTTTAGTTTTTAATGTAATGGTCGAGAGAGATATTGTATCTTGGACATCAATGATATATTCATATGCTAACGTGGGGAAAATTGAAGAATCCTTTATTTTGTTTGAAAAAATGAGGTTAGAAGGCATAAAGCCTAATGATTTTACATGGAATGTAATGATCGCTGGATATGCTAGGAGAGGAGACTGTGACACAGCTTTTATGTTACTCTCAAAAATGAGTGAAGAGGGGTTGACTCCAGATTTGGTTACCTGGAATGCAATGGTCTCAGGGTATGTTCAGAGCCACAGATCAACTGAAGCTCTAGCATTATTGCAGGAAATGTTGGATGCTGGAGTGAAGCCTAATGAAATCACGCTCACTGGGCTTCTGCCAGTCTGTGGGTTGATTGACTCTGCATATACAGGGAAAGAAATCCATGGCTTAGCATATAGATTAGAGCTTTTTGCTAATGTCTTTGTCGCTAGTGCTCTCATTGACATGTACAGTCGATGTGGGAGTGTAGAAGATGCTTGGAATGTTTTCAGTTCTGTTCCTTTGAAGAATGTTGCATCATGGAATGCTATGATAAGTTGTTATGGGAAGCATGGCAGAATAGAACATGCAATCAAACTTTTCGAGAAGATGCAGTATGAAGGAGTGCTGCCTAATGAAGTAACCTTAACTTCTCTTCTTTCTGCATGTAGTCATGGTGGTTTAGTTGAGAAGGGTTTGAAGATCTTTTGGTCCATGGAGGAGTCTTATGGCATTAGAGCAAGGAAAGAGCATTATGCTTGTGTTATTGATCTTTTGTGTCGTGTCGGGAGGCTGGAGGAGGCTTACAATATAGTCAAAGATATGGCAATAGAAGTTACAGATTCAATTGTTGGTGCTTTCTTCAGTGGCTGTAAGGTCTATGCAAGGAGAGATCTTGCTGAAAAGATGGCTAAGGATATATTACAGATGGACCTGAAGAAGCCTGAAGGTCTTGTAGCCCTTTCAAACATTTATGCTGCTGAGGGAGAGTGGGATAATGTTGAGAATGTGAGGAACATGATGAAGGACAAAGGATTCAATAAGATGCCTGGTTCCAGTTGGTTGTAGAGGAGCATGATACACAGAAATAGATCTAGGAATGTGACGCAACATTTGCTTTTAAACAATTAGATAATGGTAAGAACGTATAAGATATACTTGCGTTGCTTTTTGCAATAGTGTTGAAAAATGATTCATCAAGGTTTCACTTCCTTTTCAAAAGAACCTATGTTTCAGGAATGAGGAAACATGATATAAATATACTTCCGCCCTTAACCAAATGATCTGAGTTCAATGCTTTGTGCCTTTACACTTGATAAGTTGGAAATGTTGTTCATCTTGATGGTAGCTTCAGCTACATTAAGTGCAAATCTGTGAATTCTTCATCCATGCCCAAATAAAATAGAGAACCTTTGTTTTTAAAAAAACAAGTAGATTCTTACTTGAATTTCTTCCTTATTTTGTGCTCCTTGGCTCAAAAAAGAAGTATACTGTCACTTTGAAGTGGCCTTTTAGTTTGGTCACTCTTAAGTTATGATATTACGCTATGAAGTCCAATTTTGGGGATTGAGGTTTAGTTTGATCGATTGACTCTGTCAAGTCCATAACTCAATAAGTTAGTATTTTACTGGTTGTTAGGTTTGGTTGTATTCTTTGTTCTCTCTCTTTCTTTTCTTGGATGCAATCTTGTCCCCAGAACTAGCTGTACATTGTATTGTAGAAGTAGCTTATACTGCTGAAGTGTGATCATCTCATCTATAAGCTAAGCTAAAAGTTATGTTGTTTGAGAAGGCATACTTTTAATTATTTAATTATCTCAATACGCCCCCTTACTTGTGATTCTTTTTATTGGGGTAAATACCTGAAAATTCCTTACACTGTGCGACTATCTCACAGTTGGTAGTGCTGACACTATTTTTTACAGCCTGTACTGCTGAAATTCCATATTGTCTGGATTAGGTTTCTTTGTTCCAAAGATGAGCTGGTAAGAAAAGAGTGTTCCCAATACACTAACCTAGTTGATTCATGTCTCCTGATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCC</genome_strand>
        <mrna_strand>TTGGGAGTACCATACTCTCTCCTTATGTAGCTAAGTTAACTCACACTTGCAGCCTCTACACAACCGTTGAGCAAATATCCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAGGAAGAAAAGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E330027" ref_strand="+" ref_description="SGN-E330027 [cTOD-5-N20]">
      <seq>ccttttccactcttctttagctctcctctctctctgttccatgtttctttttctgctgatggaggagctctactgtcatctcagttgacgaccaagacttcatttttattaactttctgtatttgggttgcaagctattctggatctgttcttgacccttttcgtttttgctgattttagtggctaggagggtatatattcgaggtaaacaaatctgggtcgacgtgttcttgaagtttcatctcatggtttgactgattatttttgctccagtgagtcatttgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="11597" stop="10712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11297" g_stop="11014" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E330027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11297" e_stop="11014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG</genome_strand>
        <mrna_strand>CCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E484504" ref_strand="+" ref_description="SGN-E484504 [cSTE-13-J17]">
      <seq>agatggaagattccgagggaagtaatccatataagagtacactgaagagactggccagctatgattatatttccaaaaattatgggtcatctgggattgctggtgcattttttattgccattattataccaatattcctctccatattacttatggggaagaagaaggcaaaacagagaggtgttccggttcaagttggcggtgagccaggtcttgcaatgcgcaatgctaaatcagccagattagttgaagttccctgggaaggggctacaactgtagcagctctatttgagcagtcatgtaaaaaatattcctcttatcgctgtcttggagctagaaagctagttggcagggactttgttactgcaagtgatggaaggaagtttgagaaacttcacttgggggagtatcagtgggagtcttatggacaagtatttgatcgcgcttgcaactttgcctctggtcttattagtttgggtcatgatgtggacacccgtgctgctatctttgcagaatctcgtgcggagtggctcattgcctttcagggatgcttccngcagaatattactgttgttaccatttatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24448" stop="25728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24748" g_stop="25292" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25293" i_stop="25384" i_length="92">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.805" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25385" g_stop="25428" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="589" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E484504" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24748" e_stop="25292"/>
          <exon e_start="25385" e_stop="25428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAGGTATTCAAGCTATATACTAAAACAGTTCCTTAATCTGTGTTGCTAATTATTGTGAGATACAACAGTTAGCATGATGAAATTATTGTATTCAGGGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTC</genome_strand>
        <mrna_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATAAGAGTACACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAATATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAGAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCATGTAAAAAATATTCCTCTTATCGCTGTCTTGGAGCTAGAAAGCTAGTTGGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCGCTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACCCGTGCTGCTATCTTTGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAG............................................................................................GGATGCTTCCNGCAGAATATTACTGTTGTTACCATTTATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E426931" ref_strand="+" ref_description="SGN-E426931 [STM-47-O22]">
      <seq>agatggaagattccgagggaagtaatccatataagagtactctgaccagactggccagctatgattatatttccaaaaattatgggtcatctgggattgctggtgcattttttattgccattattataccaatattcctctccatattacttatggggaagaagaaggcaaaacagagaggtgttccggttcaagttggcggtgagccaggtcttgcaatgcgcaatgctaaatcagccagattagttgaagttccctgggaaggggctacaactgtagcagctctatttgagcagtcatgtaaaaaatattcctcttatcgctgtcttggagctagaaagctagttggcagggactttgttactgcaagtgatggaaggaagtttgagaaacttcacttgggggagtatcagtgggagtcttatggacaagtatttgatcgcgcttgcaactttgcctctggccttattagtttgggtcatgatgtggacacccgtgctgctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24448" stop="25554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24748" g_stop="25254" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E426931" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24748" e_stop="25254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCT</genome_strand>
        <mrna_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATAAGAGTACTCTGACCAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAATATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAGAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCATGTAAAAAATATTCCTCTTATCGCTGTCTTGGAGCTAGAAAGCTAGTTGGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCGCTTGCAACTTTGCCTCTGGCCTTATTAGTTTGGGTCATGATGTGGACACCCGTGCTGCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E426932" ref_strand="+" ref_description="SGN-E426932 [STM-47-O22]">
      <seq>agatggaagattccgagggaagtaatccatataagagtacactgaagagactggccagctatgattatatttccaaaaattatgggtcatctgggattgctggtgcattttttattgccattattataccaatattcctctccatattacttatggggaagaagaaggcaaaacagagaggtgttccggttcaagttggcggtgagccaggtcttgcaatgcgcaatgctaaatcagccagattagttgaagttccctgggaaagggctacaactgtagcagctctatttgagcagtcatgtaaaaaatattcctcttatcgctgtcttggagctagaaagctagttggcaaggactttgttactgcaagtgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24448" stop="25424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24748" g_stop="25124" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E426932" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24748" e_stop="25124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGA</genome_strand>
        <mrna_strand>AGATGGAAGATTCCGAGGGAAGTAATCCATATAAGAGTACACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAATATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAGAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAAGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCATGTAAAAAATATTCCTCTTATCGCTGTCTTGGAGCTAGAAAGCTAGTTGGCAAGGACTTTGTTACTGCAAGTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E249803" ref_strand="+" ref_description="SGN-E249803 [cLEF-57-H12]">
      <seq>ctatttgagcagtcttgtaaaaaacattcctcttatcgctgtcttggatctagaaagctagttagcagggactttgttactgcaagtgatggaaggaagtttgagaaacttcacttgggggagtatcagtgggagtcttatggacaagtatttgatcgcacttgcaactttgcctctggtcttattagtttgggtcatgatgtggacactcgtgctgctatcttcgcagaatctcgtgcggagtggctcattgcctttcagggatgtttccggcagaatattaccgttgttaccatttatgcttctttgggtgatgatgcacttatctattcactcaatgagactcaagtatctacattaatatgtgatgccaagcaactgaaaaaagtggcttctgttagttcgagcctgaaaaccatcaagaatgtcatctatttcgaggatgacgagacggcaacagattccacaaatattgacagctggagggtgtcgtctttctcagaagttgaaaagctgggtagaaatagtcctattcaggcaagattgcctgtcaaagaagatattgctgtgatcatgtatacaagtggcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="24732" stop="26115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25032" g_stop="25292" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25293" i_stop="25384" i_length="92">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25385" g_stop="25465" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="342" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25566" g_stop="25815" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="592" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E249803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25032" e_stop="25292"/>
          <exon e_start="25385" e_stop="25465"/>
          <exon e_start="25566" e_stop="25815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAGGTATTCAAGCTATATACTAAAACAGTTCCTTAATCTGTGTTGCTAATTATTGTGAGATACAACAGTTAGCATGATGAAATTATTGTATTCAGGGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTCTTTGGGTGATGATGCACTTATCTATTCACTCAATGAGGTGAGTCAGTTTTAGTATTTGCTCTTATGTATGCATTTTTTCTTTGCTATTTGAGACATCATATGATGCAATGAATTAATTCACTCTTGACCATTGACAGACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTA</genome_strand>
        <mrna_strand>CTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAG............................................................................................GGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTCTTTGGGTGATGATGCACTTATCTATTCACTCAATGAG....................................................................................................ACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E312654" ref_strand="+" ref_description="SGN-E312654 [cLEZ-20-H20]">
      <seq>atgcacttatctattcactcaatgagactcaggtatctgcattaatatgtgatgccaagcaactgaaaaaagtggcttctgttagttcgagcctgaaaaccatcaagaatgtcatctatttcgaggatgacgagacggcaacagattccacaaatattgacagctggagggtgtcgtctttctcagaagttgaaaagctgggtagaaatagtcctattcaggcaagattgcctgtcaaagaagatattgctgtgatcatgtatacaagtggcagtacaggcttgcctaagggtgttatgataactcatggcaacattgtagccactgcagctgctgtgatgactgtgattccaaaacttggaaccagtgatgtctatttggcttaccttcctttagctcacgtttttgagttggctgctgagactgtaatgctgactgcaggtgcttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25140" stop="26814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25440" g_stop="25465" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25566" g_stop="25829" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="290" r_length="264" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26263" g_stop="26394" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="422" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26486" g_stop="26514" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="451" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E312654" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25440" e_stop="25465"/>
          <exon e_start="25566" e_stop="25829"/>
          <exon e_start="26263" e_stop="26394"/>
          <exon e_start="26486" e_stop="26514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTTATCTATTCACTCAATGAGGTGAGTCAGTTTTAGTATTTGCTCTTATGTATGCATTTTTTCTTTGCTATTTGAGACATCATATGATGCAATGAATTAATTCACTCTTGACCATTGACAGACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAGGTTTGAACCCTACTTTCTATTGATCGATTTCTCTTGATGTACTGGAATCCAATATAAAATTATAACCATGGTATTTCTCATATACTATAGCTTCCCAAGTGGCCCACACTTCTTGGTTATTAAGGGTTATGCTACCTGAAGCTGATGCCACTTGGAATTGTCGAATGCATTAAGATTTGGTTATCAGAGCATTGATAATTTGTAAATTCAAAAAAGTTATCCAGCATGAGATGTCATTCCAAGATACAAAAAGAAAGAAAAATGAGCATTTCAGCTTTGGCATAGTGCCACTTAAACACACAGCGTATCCTTCAGTGATGCTTGTTCTTTTGGTTTAAACCAACTGAATAATTGTGTATTTATTCCTATATATCTATTGGGATAGGAGTACTGCTCTAACTCGTCATTAATTTCTTTTGTCTATGTTCTATAGGGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAGGTAACAACTTAGGAGAGTAACTTTTATTTGTTTCATTCGTATTTTACCTAGCGAATGATTATTCTAGTTCTAAGTGATTGTGGTTTTGCAGACTGTAATGCTGACTGCAGGTGCTTGTAT</genome_strand>
        <mrna_strand>ATGCACTTATCTATTCACTCAATGAG....................................................................................................ACTCAGGTATCTGCATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG...........................................................................................ACTGTAATGCTGACTGCAGGTGCTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E710439" ref_strand="+" ref_description="SGN-E710439 [FA55BG04]">
      <seq>ccttttctattcactcaatgagactcaagtatctacattaatatgtgatgccaagcaactgaaaaaagtggcttctgttagttcgagcctgaaaaccatcaagaatgtcatctatttcgaggatgacgagacggcaacagattccacaaatattgacagctggagggtgtcgtctttctcagaagttgaaaagctgggtagaaatagtcctattcaggcaagattgcctgtcaaagaagatattgctgtgatcatgtatacaagtggcagtacaggcttgcctaagggtgttatgataactcatggcaacattgtagccactgcagctgctgtgatgactgtgattccaaaacttggaaccagtgatgtctatttggcttaccttcctttagctcacgtttttgagttggctgctgagactgtaatgctgactgcaggtgcttgtattggttatggctcagccctcacattgacggacacatctaacaaagtcatgaaggggaccaagggagatgctacagttttaaaacctactttaatggctgcagttccagccattctagatcgtgttcgggatggtgttatgaagaaggttgaggagaaggcaggttctgccaagaaacttttccacatcgcctttaaccgtcgattggctgctatggaaggtagctggtttggagcttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25145" stop="27168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25444" g_stop="25465" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25566" g_stop="25829" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="286" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26263" g_stop="26394" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="418" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26486" g_stop="26659" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="592" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26775" g_stop="26868" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="686" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E710439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25444" e_stop="25465"/>
          <exon e_start="25566" e_stop="25829"/>
          <exon e_start="26263" e_stop="26394"/>
          <exon e_start="26486" e_stop="26659"/>
          <exon e_start="26775" e_stop="26868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCTATTCACTCAATGAGGTGAGTCAGTTTTAGTATTTGCTCTTATGTATGCATTTTTTCTTTGCTATTTGAGACATCATATGATGCAATGAATTAATTCACTCTTGACCATTGACAGACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAGGTTTGAACCCTACTTTCTATTGATCGATTTCTCTTGATGTACTGGAATCCAATATAAAATTATAACCATGGTATTTCTCATATACTATAGCTTCCCAAGTGGCCCACACTTCTTGGTTATTAAGGGTTATGCTACCTGAAGCTGATGCCACTTGGAATTGTCGAATGCATTAAGATTTGGTTATCAGAGCATTGATAATTTGTAAATTCAAAAAAGTTATCCAGCATGAGATGTCATTCCAAGATACAAAAAGAAAGAAAAATGAGCATTTCAGCTTTGGCATAGTGCCACTTAAACACACAGCGTATCCTTCAGTGATGCTTGTTCTTTTGGTTTAAACCAACTGAATAATTGTGTATTTATTCCTATATATCTATTGGGATAGGAGTACTGCTCTAACTCGTCATTAATTTCTTTTGTCTATGTTCTATAGGGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAGGTAACAACTTAGGAGAGTAACTTTTATTTGTTTCATTCGTATTTTACCTAGCGAATGATTATTCTAGTTCTAAGTGATTGTGGTTTTGCAGACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAGGTTCCACAGACATTTCAGTTTTAAGATCCCAATGGGAAGAGCATACTTAGTTTGAGAACAAGACTCCAAAAGATTCAATGGGACTAACTGTTGTTTATATCTTTCGTGACGCTAGGTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGG</genome_strand>
        <mrna_strand>CCTTTTCTATTCACTCAATGAG....................................................................................................ACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG...........................................................................................ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG...................................................................................................................GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E252333" ref_strand="+" ref_description="SGN-E252333 [cLEG-12-L14]">
      <seq>aagttgaaaagctgggtacaaatagtcctattcaggcaagagtgcctgtcaaagaagatattgctgtgatcatgtatacaagtggcagtacaggcttgcctaagggtgttatgataactcatggcaacattgtagccactgcagctgctgcgatgactgtgattacaaaacttggaaccagtgatgtctatttggcttaccttcctttagctcacgtttttgagtgggctgctgagactgtaatgctgactgcaggtgctagtattggttatggctcagccctcacattgacggacacatctaacacagtcatgaaggggaccaagggagatgctacagttctaaaacctactataatggctgcagatccagccattctagatcgtgttctgaatggtgttatgaagaaggatgaggagaaggcaggttctagcaagaaacttttccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25426" stop="27115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25726" g_stop="25829" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26263" g_stop="26394" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="236" r_length="132" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26486" g_stop="26659" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="410" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115">
            <donor d_prob="0.536" d_score="0.94"/>
            <acceptor a_prob="0.919" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26775" g_stop="26815" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="451" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E252333" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25726" e_stop="25829"/>
          <exon e_start="26263" e_stop="26394"/>
          <exon e_start="26486" e_stop="26659"/>
          <exon e_start="26775" e_stop="26815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAGGTTTGAACCCTACTTTCTATTGATCGATTTCTCTTGATGTACTGGAATCCAATATAAAATTATAACCATGGTATTTCTCATATACTATAGCTTCCCAAGTGGCCCACACTTCTTGGTTATTAAGGGTTATGCTACCTGAAGCTGATGCCACTTGGAATTGTCGAATGCATTAAGATTTGGTTATCAGAGCATTGATAATTTGTAAATTCAAAAAAGTTATCCAGCATGAGATGTCATTCCAAGATACAAAAAGAAAGAAAAATGAGCATTTCAGCTTTGGCATAGTGCCACTTAAACACACAGCGTATCCTTCAGTGATGCTTGTTCTTTTGGTTTAAACCAACTGAATAATTGTGTATTTATTCCTATATATCTATTGGGATAGGAGTACTGCTCTAACTCGTCATTAATTTCTTTTGTCTATGTTCTATAGGGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAGGTAACAACTTAGGAGAGTAACTTTTATTTGTTTCATTCGTATTTTACCTAGCGAATGATTATTCTAGTTCTAAGTGATTGTGGTTTTGCAGACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAGGTTCCACAGACATTTCAGTTTTAAGATCCCAATGGGAAGAGCATACTTAGTTTGAGAACAAGACTCCAAAAGATTCAATGGGACTAACTGTTGTTTATATCTTTCGTGACGCTAGGTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACAT</genome_strand>
        <mrna_strand>AAGTTGAAAAGCTGGGTACAAATAGTCCTATTCAGGCAAGAGTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGCGATGACTGTGATTACAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTGGGCTGCTGAG...........................................................................................ACTGTAATGCTGACTGCAGGTGCTAGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACACAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTCTAAAACCTACTATAATGGCTGCAGATCCAGCCATTCTAGATCGTGTTCTGAATGGTGTTATGAAGAAG...................................................................................................................GATGAGGAGAAGGCAGGTTCTAGCAAGAAACTTTTCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E204736" ref_strand="+" ref_description="SGN-E204736 [cLEC-14-H18]">
      <seq>agaaatagtcctattcaggcaagattgcctgtcaaagaagatattgctgtgatcatgtatacaagtggcagtacaggcttgcctaagggtgttatgataactcatggcaacattgtagccactgcagctgctgtgatgactgtgattccaaaacttggaaccagtgatgtctatttggcttaccttcctttagctcacgtttttgagttggctgctgagactgtaatgctgactgcaggtgcttgtattggttatggctcagccctcacattgacggacacatctaacaaagtcatgaaggggaccaagggagatgctacagttttaaaacctactttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="25443" stop="26907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25743" g_stop="25829" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26263" g_stop="26394" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26486" g_stop="26607" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="341" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E204736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25743" e_stop="25829"/>
          <exon e_start="26263" e_stop="26394"/>
          <exon e_start="26486" e_stop="26607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAGGTTTGAACCCTACTTTCTATTGATCGATTTCTCTTGATGTACTGGAATCCAATATAAAATTATAACCATGGTATTTCTCATATACTATAGCTTCCCAAGTGGCCCACACTTCTTGGTTATTAAGGGTTATGCTACCTGAAGCTGATGCCACTTGGAATTGTCGAATGCATTAAGATTTGGTTATCAGAGCATTGATAATTTGTAAATTCAAAAAAGTTATCCAGCATGAGATGTCATTCCAAGATACAAAAAGAAAGAAAAATGAGCATTTCAGCTTTGGCATAGTGCCACTTAAACACACAGCGTATCCTTCAGTGATGCTTGTTCTTTTGGTTTAAACCAACTGAATAATTGTGTATTTATTCCTATATATCTATTGGGATAGGAGTACTGCTCTAACTCGTCATTAATTTCTTTTGTCTATGTTCTATAGGGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAGGTAACAACTTAGGAGAGTAACTTTTATTTGTTTCATTCGTATTTTACCTAGCGAATGATTATTCTAGTTCTAAGTGATTGTGGTTTTGCAGACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAAT</genome_strand>
        <mrna_strand>AGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG...........................................................................................ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E320007" ref_strand="+" ref_description="SGN-E320007 [cTOB-31-M3]">
      <seq>cagctgctgtgatgactgtgattccaaaacttggaaccagtgatgtctatttggcttaccttcctttagctcacgtttttgagttggctgctgagactgtaatgctgactgcaggtgcttgtattggttatggctcagccctcacattgacggacacatctaacaaagtcatgaaggggaccaagggagatgctacagttttaaaacctactttaatggctgcagttccagccattctagatcgtgttcgggatggtgttatgaagaaggttgaggagaaggcaggttctgccaagaaacttttccacatcgcctttaaccgtcgattggctgctatggaaggtagctggtttggagcttggggtctagagaaacaattgtgggatatcattatattcaaaaaggtgagggctgtgcttggaggagatatccgtttcatgctttgcggtggtgctcctctatcangggatactcaaagatttatcaacatttgtatgggagctccaattggtcaagggtatggtttgacagagacatttgctggagctgctttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagttgttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26000" stop="29550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26300" g_stop="26394" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26486" g_stop="26659" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="269" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26775" g_stop="27004" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="499" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27180" g_stop="27297" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="617" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="749" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29218" g_stop="29250" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="782" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E320007" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26300" e_stop="26394"/>
          <exon e_start="26486" e_stop="26659"/>
          <exon e_start="26775" e_stop="27004"/>
          <exon e_start="27180" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAGGTAACAACTTAGGAGAGTAACTTTTATTTGTTTCATTCGTATTTTACCTAGCGAATGATTATTCTAGTTCTAAGTGATTGTGGTTTTGCAGACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAGGTTCCACAGACATTTCAGTTTTAAGATCCCAATGGGAAGAGCATACTTAGTTTGAGAACAAGACTCCAAAAGATTCAATGGGACTAACTGTTGTTTATATCTTTCGTGACGCTAGGTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGGGTAATTCTTCTCACTCCTGTTGATGGTCTTTATCCAATCTGTTTATTCCTAATGAAGATAAATTTGGTTTCTTTTTTTTTCAATATCTGCTCCTAGTATGGCCTGCTTATGGTTAAGCTTCAAATTTGACAAATACAATATTTGATGTAAATATTTTTGTGACAACTTGCTGTAGAGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACT</genome_strand>
        <mrna_strand>CAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG...........................................................................................ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG...................................................................................................................GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCANGGGATACTCAAAGATTTATCAACATTTGTATGGG...............................................................................................................................................................................AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E249429" ref_strand="+" ref_description="SGN-E249429 [cLEF-50-D10]">
      <seq>ggacacatctaacaaagtcatgaaggggaccaagggagatgctacagttttaaaacctactttaatggctgcagttccagccattctagatcgtgttcgggatggtgttatgaagaaagttgaggagaaggcaggttctgccaagaaacttttccacatcgcctttaaccgtcgattggctgctatggaaggtagctggtttggagcttggggtctagagaaacaattgtgggatatcattatattcaaaaaggtgagggctgtgcttggaggagatatccgtttcatgctttgcggtggtgctcctctatcaagggatactcaaagatttatcaacatttgtatgggagctccaattggtcaagggtatggtttgacagagacatttgctggagctgctttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26242" stop="29357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26542" g_stop="26659" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115">
            <donor d_prob="0.536" d_score="0.98"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26775" g_stop="27004" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="348" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27180" g_stop="27297" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="466" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29000" g_stop="29057" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="524" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E249429" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26542" e_stop="26659"/>
          <exon e_start="26775" e_stop="27004"/>
          <exon e_start="27180" e_stop="27297"/>
          <exon e_start="29000" e_stop="29057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAGGTTCCACAGACATTTCAGTTTTAAGATCCCAATGGGAAGAGCATACTTAGTTTGAGAACAAGACTCCAAAAGATTCAATGGGACTAACTGTTGTTTATATCTTTCGTGACGCTAGGTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGGGTAATTCTTCTCACTCCTGTTGATGGTCTTTATCCAATCTGTTTATTCCTAATGAAGATAAATTTGGTTTCTTTTTTTTTCAATATCTGCTCCTAGTATGGCCTGCTTATGGTTAAGCTTCAAATTTGACAAATACAATATTTGATGTAAATATTTTTGTGACAACTTGCTGTAGAGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAG</genome_strand>
        <mrna_strand>GGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAA...................................................................................................................GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAAGGGATACTCAAAGATTTATCAACATTTGTATGGG...............................................................................................................................................................................AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E715740" ref_strand="+" ref_description="SGN-E715740 [FB15AE12]">
      <seq>caaagtcatgaaggggaccaagggagatgctacagttttaaaacctactttaatggctgcagttccagccattctagatcgtgttcgggatggtgttatgaagaaggttgaggagaaggcaggttctgccaagaaacttttccacatcgcctttaaccgtcgattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcgatacaagaatgagttagaaaagttatatcagtgaatcatacttccttgccgagtaacacttcatttagcagctttatgtgcctcttgccagttaatcatctcaagttgtcctgttgaagttcaattacacgtctccttttgctgttgcgtcaatgttaaagcagttgtatgcatctttccatatggttgtcctggttaagcagcgaggtataatagattttgttctcgcctcgccagcttcagttattcatcttattgagcttcacatatggaggtatacagtcagtgtctttgtttgttaatcatttctcagacaggtaaataaagttatttgattgctttttctctctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26254" stop="77601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26554" g_stop="26659" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115">
            <donor d_prob="0.536" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26775" g_stop="26834" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="166" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26835" i_stop="31971" i_length="5137">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31972" g_stop="32385" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="580" r_length="414" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E715740" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26554" e_stop="26659"/>
          <exon e_start="26775" e_stop="26834"/>
          <exon e_start="31972" e_stop="32385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAGGTTCCACAGACATTTCAGTTTTAAGATCCCAATGGGAAGAGCATACTTAGTTTGAGAACAAGACTCCAAAAGATTCAATGGGACTAACTGTTGTTTATATCTTTCGTGACGCTAGGTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGGGTAATTCTTCTCACTCCTGTTGATGGTCTTTATCCAATCTGTTTATTCCTAATGAAGATAAATTTGGTTTCTTTTTTTTTCAATATCTGCTCCTAGTATGGCCTGCTTATGGTTAAGCTTCAAATTTGACAAATACAATATTTGATGTAAATATTTTTGTGACAACTTGCTGTAGAGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTGTTCTCGCCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAGGTAAATAAAGTTATTTGATTGCTTTTTCTCTCTATTAATTTCTTAATGTAGCA</genome_strand>
        <mrna_strand>CAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG...................................................................................................................GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTGTTCTCGCCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAGGTAAATAAAGTTATTTGATTGCTTTTTCTCTCTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E245994" ref_strand="+" ref_description="SGN-E245994 [cLEF-54-G10]">
      <seq>agagaaacaattgtgggatatcattatattcaaaaaggtgagggctgtgcttggaggagatatccgtttcatgctttgcggtggtgctcctctatcaggggatactcaaagatttatcaacatttgtatgggagctccaattggtcaagggtatggtttgacagagacatttgctggagctgctttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagttgttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacactggtgacattggaaggtttcatcctgatgggtgcattgaaattattgatagaaagaaggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26573" stop="30101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26873" g_stop="27004" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27180" g_stop="27297" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="250" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="382" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="517" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29692" g_stop="29801" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="627" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E245994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26873" e_stop="27004"/>
          <exon e_start="27180" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
          <exon e_start="29692" e_stop="29801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGGGTAATTCTTCTCACTCCTGTTGATGGTCTTTATCCAATCTGTTTATTCCTAATGAAGATAAATTTGGTTTCTTTTTTTTTCAATATCTGCTCCTAGTATGGCCTGCTTATGGTTAAGCTTCAAATTTGACAAATACAATATTTGATGTAAATATTTTTGTGACAACTTGCTGTAGAGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGA</genome_strand>
        <mrna_strand>AGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGG...............................................................................................................................................................................AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E486157" ref_strand="+" ref_description="SGN-E486157 [cSTE-21-A14]">
      <seq>aatacaattgtgggatatcattatattcaaaaaggtgagggcngtgcttggaggagatattctgtttcatgctttgcggtggtgctcctctatcaggggatactcaaagatttatcaacatttgtatgggagctccaattggtcaagggtatggtttgacagagacatttgctggagctgctttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagtggttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacactggtgacattggaaggtttcatcctgatggatgcattgaaattattgatagaaagaaggatattgttaagcttcagcacggggagtatatctcacttggaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26577" stop="29653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26876" g_stop="27004" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27180" g_stop="27297" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="248" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="380" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="515" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E486157" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26876" e_stop="27004"/>
          <exon e_start="27180" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATA-TCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGGGTAATTCTTCTCACTCCTGTTGATGGTCTTTATCCAATCTGTTTATTCCTAATGAAGATAAATTTGGTTTCTTTTTTTTTCAATATCTGCTCCTAGTATGGCCTGCTTATGGTTAAGCTTCAAATTTGACAAATACAATATTTGATGTAAATATTTTTGTGACAACTTGCTGTAGAGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG</genome_strand>
        <mrna_strand>AATACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCNGTGCTTGGAGGAGATATTCTGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGG...............................................................................................................................................................................AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTGGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGATGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E251638" ref_strand="+" ref_description="SGN-E251638 [cLEG-15-G18]">
      <seq>tttgctggagctgctttttctgagtgggatgatccttctggcgggcttgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagttgttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacactggtgacattggaaggtttcatcctgatgggtgcattgaaattattgatagaaagaaggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26917" stop="30125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27217" g_stop="27297" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="213" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="348" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29825" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="482" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E251638" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27217" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
          <exon e_start="29692" e_stop="29825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCAT</genome_strand>
        <mrna_strand>TTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGGCGGGCTTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E333837" ref_strand="+" ref_description="SGN-E333837 [cTOD-24-A15]">
      <seq>tttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagttgttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacactggtgacattggaaggtttcatcctgatgggtgcattgaaattattgatagaaagaaggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacaaagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgctagattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggactcctgagtctggattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcgatacaagaatgagttagaaaagttatatcagtgaatcatacttccttgccgagtacacttcatttagcagctttatgtgcctcttgcccagtaatcatctcaagttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26931" stop="32425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27231" g_stop="27297" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="199" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="334" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29898" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="541" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31885" g_stop="32125" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="781" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E333837" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27231" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
          <exon e_start="29692" e_stop="29898"/>
          <exon e_start="31885" e_stop="32125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTC</genome_strand>
        <mrna_strand>TTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGT-ACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCCAGTAATCATCTCAAGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E332876" ref_strand="+" ref_description="SGN-E332876 [cTOD-19-K17]">
      <seq>tttttctgagtgggatgatccttctgtcgggcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagttgttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacactggtgacattggaaggtttcatcctgatgggtgcattgaaattattgatagaaagaaggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacaaagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgctagattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggactcctgagtctggattggtaactgctgctctnngaattgaacgggaacctctgaaggctcgatacnagaatgagttagaaaagttatatcagtgaatcatacttccttgncgagtaacacttcatttagcagctttatgtgcctcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26931" stop="32404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27231" g_stop="27297" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="199" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="334" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29898" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="541" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31885" g_stop="32104" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="761" r_length="220" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E332876" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27231" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
          <exon e_start="29692" e_stop="29898"/>
          <exon e_start="31885" e_stop="32104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGA-AATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCC</genome_strand>
        <mrna_strand>TTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTNNGAATTG-AACGGGAACCTCTGAAGGCTCGATACNAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGNCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E576212" ref_strand="+" ref_description="SGN-E576212 [59394]">
      <seq>gcgtgttggtccacctcttccttgttgctacataaagcttattacttgggaagaaggaggttacagaatagttgataagcctatgcctcggggagaagtagtggttggtggatgcagcataactgctggttacttcaacaatgaggaaaaaactaatgaggtttataaggttgatgagacaggcatgcgctggttctacacgtggtgacgttggaaggtttcatcctgatggatgcattgaaattattgatagaaagacggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacagagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgcaaaattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggacccctgagtctggattggtaactgctgctctgaaattgaaacggggaacctctgaaaggctcgatatacgcaatgagttacaccagttatatcagtgaatcatacttccttgccgagttacactccatttaagcagatttgtcttgcctgttgccagtttaaccatctcaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="26961" stop="32423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27261" g_stop="27297" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702">
            <donor d_prob="0.932" d_score="0.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29000" g_stop="29131" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="169" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29218" g_stop="29352" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="305" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29692" g_stop="29898" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="512" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31885" g_stop="32123" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="757" r_length="245" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E576212" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27261" e_stop="27297"/>
          <exon e_start="29000" e_stop="29131"/>
          <exon e_start="29218" e_stop="29352"/>
          <exon e_start="29692" e_stop="29898"/>
          <exon e_start="31885" e_stop="32123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAGGTATGGTCACTTTGTGGTAACAAAAGGTAACATTTGAGAAATGGATAGCCTGGTTTGGATAAAGTGTTTATATCAACTGCGATAATTCATTTATGAAACTATATTAGCTAGTTGTTCTGAATAGATATAAACTTGGGAAGTCTTTACAAAAGTTGAATATTTCACATCAACTTTGTCTGTCAGTTTCTACCTTTCCATTCCCTTTATATTTTCGACAATACTATGATTTCCCAAGGTTTTTGTAGAAACTGTACTTTTGATCTTGCTAATATCATCTTCTGTTGTATGCCATGGGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAATGTTCACGTCCTTCAATTCTAAATCAAGAAGTTATCTGTTGTCTGTGGAAAAGAGAAAAATTAAACACGTAACTGCAAATAATCCATGCACTAAAGTTAATGGATCAGAGATGTGCAGGAAGATATTTCTGTTTATTAATCATCTTCTGTTGTATGCCATGAGAATGTGAGGATAATTTCATCAATCTTTGTCAAGGTTTTGGGCAACGTACATATCCATTTATTCTAAATTTAGAAGTTATCAATGGTCTGAGGAAAGGATAAACAATAAACACGGGACTGCAGATAATCCATGCAGTGAAGTTAATGTATCAAAGATGTGCAGGAAAATATTCTGTTTATCAACCTCCTTTTTAAATTTTCTTCTTTCACAACTTATGGTTTCTCTGAGGAACATCAAATCCCAACAAGGAAAAGGCAAGACAATAGGGGAAAATCAGAGAAACTAAATAGGACATTTCAGTTGCAGCCTCTCATACACCAAATTATTCATGTTTCTATAAATCTCTCCACCAGGGCAGTATGCACCACCACACATCTTCCACTTTAGTGGTCCCAATTGTCAACTCTGCATAGAGCCGTCCTTTCAACCACTTACTCCAAAATCCTTTTCCCCAGTCCCTTTATCGGAAATTTTGAAATGAATTAATTTCATTGCCTTCAGATCATTTTCCTCGGCTACCTTCAGTGCCTTCAACATACTGCCATCTTTCCTGAGACGTACGACTAACTCACATGATACTGAATAAATTATCTATTTACTATTTGTTGTCCTGTTCTAATGTATATGACAGTCTTCTTATTTTGAACTGTCCAAAACCACTGATCGGATTTCACTAATAAATGTTATTGATACTACTTTCACAAACTTCACAATTAAATTAGATTTAAAATCCATCAACCTAACTTCTCAACCATTACTTTGATATTTTTGGTTACTGTTCTACAAAGGCACGGACCCCAACTTATTTGGGATTCAGGCATATTCTTATACAAAAATCAAATAATATCTTGACTTGTTAGACTGTTTAAAGGCATATACTTCAATGCCTATTTGATCTGATGTTGAATTTTTGTCCTTTCACCGTTACAGTTTATGAGATCAGTTATTATTTTCATGAGTTCCTCTGGAGTTTTTCCTTTAAATAATTGTCAAATTTCAAATGTAGACAGACTGCATATTTTCTTATCTGGAGACTTCACCTAGGTTCAATTAAACAGTACAACAAGAGGAAATGATAGTGGCTGTTCCTGTTTCTTTCTTTTCTTCTTTGACACTGGTTAACTTGCTAAATCCTGAGTTTCATGGTTTTGTGGTAGTGAATGCGGGTTCTTACTCAAAGCCTTGTGTCAAACCATGCAGCTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAGGTAGTGCTGTCTTATGAGCTTTAGCTCTTGCAAAACGAGGAATTTTGTATATTGACAATAATTTATTCTGCTATTATCTCTGATAGGTTGATGAGACAGGCATGCGCTGGTTCTACAC-TGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAAC-GGGAACCTCTG-AAGGCTCGATACAAG-AATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTT-AGCAGCTTTAT-GTGCCTCTTGCCAG-TTAATCATCTCAAGTTG</genome_strand>
        <mrna_strand>GCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTGGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG......................................................................................GTTGATGAGACAGGCATGCGCTGGTTCTACACGTGGTGACGTTGGAAGGTTTCATCCTGATGGATGCATTGAAATTATTGATAGAAAGACGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAGAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCAAAATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACCCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGGAACCTCTGAAAGGCTCGATATACGCAATGAGTTACACCAGTTATATCAGTGAATCATACTTCCTTGCCGAGTTACACTCCATTTAAGCAGATTTGTCTTGCCTGTTGCCAGTTTAACCATCTCAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E599500" ref_strand="-" ref_description="SGN-E599500 [52490]">
      <seq>aggtttcatcctgatggatgcattgaaattattgatagaaagaaaggatattgttaagcttcagcacggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacagagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcagaagctgcaagattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggactcctgagtctggattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcgatataagaatgagttagaaaagttatatcggtgaatcatacttccttgccgagttacactcatttagcagattacacgtctccttttgccgttgcgtcaatgttaaagcagttgtatgcatctttccatatggttgtcctgttaagcagcgaggtataatagattttgtacttgcataaaggaaaaatcgccagcttcagttatttattttattgagctttacatatggaggtatacagtcagtgtctttgtttgttaatcatttctcagacagaggtaaataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="28963" stop="32643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29263" g_stop="29352" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29692" g_stop="29898" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="298" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31885" g_stop="32086" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="499" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32087" i_stop="32138" i_length="52">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32139" g_stop="32332" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="703" r_length="204" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E599500" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599500" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29263" e_stop="29352"/>
          <exon e_start="29692" e_stop="29898"/>
          <exon e_start="31885" e_stop="32086"/>
          <exon e_start="32139" e_stop="32332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAG-AAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTG---TT-C-T---CG---CCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</genome_strand>
        <mrna_strand>AGGTTTCATCCTGATGGATGCATTGAAATTATTGATAGAAAGAAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAGAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAGAAGCTGCAAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATATAAGAATGAGTTAGAAAAGTTATATCGGTGAATCATACTTCCTTGCCGAGTTACAC-TCATTTAGCAG....................................................ATTACACGTCTCCTTTTGCCGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCT-GTTAAGCAGCGAGGTATAATAGATTTTGTACTTGCATAAAGGAAAAATCGCCAGCTTCAGTTATTTATTTTATTGAGCTTTACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E591033" ref_strand="-" ref_description="SGN-E591033 [44736]">
      <seq>cggggagtatatctcacttggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacagagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgcaagattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggactcctgagtctggattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcgatataagaatgagttagaaaagttatatcggtgaatcatacttccttgccgagttacactcatttagcagattacacgtctccttttgccgttgcgtcaatgttaaagcagttgtatgcatctttccatatggttgtcctgttaagcagcgaggtataatagattttgtacttgcataaaggaaaaatcgccagcttcagttatttattttattgagctttacatatggaggtatacagtcagtgtctttgtttgttaatcatttctcagacagaggtaaataaagtaacttgtttgcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="29028" stop="32656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29328" g_stop="29352" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29692" g_stop="29898" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="232" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31885" g_stop="32086" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="433" r_length="201" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32087" i_stop="32138" i_length="52">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32139" g_stop="32332" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="637" r_length="204" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E591033" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29328" e_stop="29352"/>
          <exon e_start="29692" e_stop="29898"/>
          <exon e_start="31885" e_stop="32086"/>
          <exon e_start="32139" e_stop="32332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGAGTATATCTCACTTGGAAAGGTATCACAATTTCTTTCTTACCTGGAATCTGATGTTTTACCTAGCAGTATAACTAATCCTAGTAGATTGACCATTTGCTAGTATAACCACTTAAGAAAAAGTATGAACTACACCTTGTAGATTCACCTCGATTTAGAAATTTGGTCACTTTTGTTTTGGTCATGAAGCCCTTACAAAGTGGTGATAAACATTTTTATATCATATTACAGGGGCTTTTCTTTTTCTGTTATTTTGGGCTCTTATATGATTTTTTATTTTCTTCCTGTTTTATCCTATCTATTTTTCATACTTAGGCTTGACTTTGGGAAATAACTTGGTAAATTGATGCTCAATGCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTG---TT-C-T---CG---CCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</genome_strand>
        <mrna_strand>CGGGGAGTATATCTCACTTGGAAAG...................................................................................................................................................................................................................................................................................................................................................GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAGAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCAAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATATAAGAATGAGTTAGAAAAGTTATATCGGTGAATCATACTTCCTTGCCGAGTTACAC-TCATTTAGCAG....................................................ATTACACGTCTCCTTTTGCCGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCT-GTTAAGCAGCGAGGTATAATAGATTTTGTACTTGCATAAAGGAAAAATCGCCAGCTTCAGTTATTTATTTTATTGAGCTTTACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E426933" ref_strand="-" ref_description="SGN-E426933 [STM-47-O22]">
      <seq>ggaaaggttgaggcagcacttctatcaagcaattacgtggagagcatcatggtgtacgcagaccccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacagagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgcaaaattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggacccctgagtctggattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcgatataagaatgagttagaaaagttatatcagtgaatcatacttccttgccgagttacactccatttagcagatttgtctgcctgttgccagttaaacatctcaagttgtcctgttggagtgcaattacacgtctccttttgctgttgcgtcaatgttaaagcagttgtatgcatctttccatatggttgtcctgttaagcagcgaggtataatagattttgtacttccataaaggaaaaatcgccagcttcagttatttattttattgagctttacatatggaggtatacagtccgtgtctttgtttgttaatcatttctcagacagaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="29386" stop="32635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29686" g_stop="29898" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31885" g_stop="32332" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="671" r_length="458" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E426933" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426933" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29686" e_stop="29898"/>
          <exon e_start="31885" e_stop="32332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTG---TT-C-T---CG---CCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</genome_strand>
        <mrna_strand>GGAAAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAGAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCAAAATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACCCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATATAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTTACACTCCATTTAGCAGATTTGTCTGCCTGTTGCCAGTTAAACATCTCAAGTTGTCCTGTTGGAGTGCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCT-GTTAAGCAGCGAGGTATAATAGATTTTGTACTTCCATAAAGGAAAAATCGCCAGCTTCAGTTATTTATTTTATTGAGCTTTACATATGGAGGTATACAGTCCGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E305202" ref_strand="+" ref_description="SGN-E305202 [cLEY-18-P22]">
      <seq>accccttccataattattgtgtagctttagttgtcccttcacgcccggtgcttgagaaatgggcccaagaaaatggcatccagcacaaagatttttccgaactgtgtgacaaagtagaatcagtcaatgagatcaagcaatcactttcaaaggtagcaaaagctgctagattggacaagtttgagcttcctgccaagatcaagttaataccagagtcttggactcctgagtctggattggtaactgctgctctgaaattgaaacgggaacctctgaaggctcaatacaagagtgagttagaaaagatatatcactgaatcatacttgcttgccgagtaacacttcatttagcagctntatgtgcctcttgccagttaatcatctcaagttgtcctgttgaagttcaattacacgtctccttttgctgttgcgtcaatgttaaagcagttgtatgcatctttccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="29447" stop="32499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29747" g_stop="29898" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31885" g_stop="32199" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="467" r_length="315" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E305202" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29747" e_stop="29898"/>
          <exon e_start="31885" e_stop="32199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAGGTTTGTTTCTTTTCAGCAAGTGTTATTAATTTATAATCATGTCCATGTATTAATTTGGCAAAACTAGTGGCCTTGCTTTTATTCTAAAGGTTGTGGTACAGAGGATAAATGAATGCTACCGTGACTGTGGGTAAAGGAAGATGATGGCATAGTTGAGCAAAGTTAAAAATAGTAAAAGATAAACATGAAAACATTTCCTCCTCCAAGTTTTGGTGTAATATAGAAGGCCTTTCCCAATCCCTCCATGACAAAAGGGGGTGAATAGTAATGTAAATCAATTGCTTAATTTAACAGGAAACACAAAAGACCAAAAATTTTGACGTCGGATGCCTTGTGCACAGGGCATCCCTTTTTACAAATGAGCGTAAATGCTAAAAAGAATAGCAGAACTGGAAGAAAATCCAAGAAAATAAGCAAAAGTCAATAGCAAGAACATAGAAAAGCGAAAAAAATGAAAAGAATTTTTAACTGAAAGAAAAATACCAACCGACCTTTAGCTCCTCTCAATTGCATACTATCTTCCTGTAATCAACCCCAAAGTCATGGAGCCTGTCACAGTTGTCCACCTTGCCTTCCCCTCTATGATAAATTGCCTTCTGGTGGACTGTTTCATATCCTTCCCCAGCCCAAGGCTCTTCTTAGCTACTTGACTTTCATTTTGTTCTTCTGGGTAGGCGAGTAATGACCTTGACTGTCTTGTTGCAGCTGTATGGATGCCTCTTCTCATCATCTTAAAACCTCTATTCCATTTAGCTGCACGACTTCCTCTCATACACAAACAACGCTGCACTTATTGGCAGCACTGTGGTCGACTCCATATGCAGTGCCATTAACTTCTAAAAGTTGCTTTTATCCACCACAATCTCGTGACATGATCACTTCACACACCAATTTGACCTGGCTAACAGCCATTAACACCACATTTGCTTTTATTAATCTTGAATTTTGTTGAAAGGTTTATTTTGGCTTAATACATTGTCAGCCTCTTAAAGTAAAGTTGCATGATAATCCGTTTAGACAGTTGAACTAGTTATGTTCCAATTAAACACCTCAACTCCTAATAAAATGTCCCAATTAGACACTTCCGGTTCAGAATTTGAAAAAACTTTTATATGTGCTTTCATTTGTCTATTAGGTAGTCAAGTTAACCACACAATATATGTCATATCCTTTAATTATACGCATCAACCTCCAGTAGGAAATGTCTGGGGTTTTACGGATTATTGAGGTAAATGACACACAAACATAATTTCAAAATTTAAACCAAAATTATCAAATTGAAACATTTTACTAGGAAATGAGGTGTTCAATTAGAACTTGTATTAGTTTGAGTGTCCAAGTGGAATATTCGGGCAAATTCAAAGAACTTGGTTATGCATTAACCCTTTAATTTTTGTTCTTTTCCTTTTAGCTGAGTTTTCTTTTAGTCTCTGTTTGTTTGCTTTTATTTCTCTGCATAGATTAGTTATCCATCCTATTAACTTTCTTCATGATTTTGTTTCCCTTTGACTTTCTGGAGTATTTGGATAGTGTAAGAATTTTAGAATAAAACTCTAGTGCTTGTTAAATGCTTATATCTTAGATGGTCTGCTGCTGGACAAATCAGTTAGAAGGTGGTTTAATTTTTCTGTGTTCTTTTTCCATTTTTCCATTTTAGTGCTGGAAAAGGGCAGGAGGCTCAATATAAGGTTGATGACCTCGTTTCCCCAGTCATATCCCCTCACCCACCCTTCTACTATCTTACCCTTGTTTGGTTGAGATGAAGTTTTAACTCGTTGATAGAACAATTATCCTTCTTGTTCCTAGAGAATATTCAAGGCTGTACACCATTTAAGAAGTTAAGGTCTCTCATTGGAGCCTCCTCTGCTGATCAATTAATGAAATCATATTTTTCTCCCGACAACTAGTGTACCTCTGTTCTCGTGTGCCAATATTATTTTCCTAGAATGTTGAAAAGTTTTGGTAATATACACGGCTGATTTTCAGGTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATAT</genome_strand>
        <mrna_strand>ACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCAATACAAGAGTGAGTTAGAAAAGATATATCACTGAATCATACTTGCTTGCCGAGTAACACTTCATTTAGCAGCTNTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E260387" ref_strand="+" ref_description="SGN-E260387 [cLEG-66-C23]">
      <seq>ggaaaaatgatacagatttcttacacaaggattctactagcatggtacattgagcaaatattacagactggtgaaaactctgctgtctgtaatgtacagtaaagagcacaaacaacaacaaactgttttttcaggttatcacctgctctgtagagcatagatcagcagttgaaatgaagaccatttatggtggaaattactaacttgttgctcgtcttttcttcttaattctattatactgctattgctttatattaattttcacacgatgcatataatttccaatttcaagtatactataatttcatctatagttgacaattttcacaaccctcgtaatgggcaagtgtaataactagagattctttcatatatctttatgtatacttggtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="33297" stop="32301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32997" g_stop="32601" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E260387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32997" e_stop="32601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATGATACAGATTTCTTACACAAGGATTCTACTAGCATGGTACATTGAGCAAATATTACAGACTGGTGAAAACTCTGCTGTCTGTAATGTACAGTAAAGAGCACAAACAACAACAAACTGTTTTTTCAGGTTATCACCTGCTCTGTAGAGCATAGATCAGCAGTTGAAATGAAGACCATTTATGGTGGAAATTACTAACTTGTTGCTCGTCTTTTCTTCTTAATTCTATTATACTGCTATTGCTTTATATTAATTTTCACACGATGCATATAATTTCCAATTTCAAGTATACTATAATTTCATCTATAGTTGACAATTTTCACAACCCTCGTAATGGGCAAGTGTAATAACTAGAGATTCTTTCATATATCTTTATGTATACTTGGTGATTT</genome_strand>
        <mrna_strand>GGAAAAATGATACAGATTTCTTACACAAGGATTCTACTAGCATGGTACATTGAGCAAATATTACAGACTGGTGAAAACTCTGCTGTCTGTAATGTACAGTAAAGAGCACAAACAACAACAAACTGTTTTTTCAGGTTATCACCTGCTCTGTAGAGCATAGATCAGCAGTTGAAATGAAGACCATTTATGGTGGAAATTACTAACTTGTTGCTCGTCTTTTCTTCTTAATTCTATTATACTGCTATTGCTTTATATTAATTTTCACACGATGCATATAATTTCCAATTTCAAGTATACTATAATTTCATCTATAGTTGACAATTTTCACAACCCTCGTAATGGGCAAGTGTAATAACTAGAGATTCTTTCATATATCTTTATGTATACTTGGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E280285" ref_strand="+" ref_description="SGN-E280285 [cLER-1-E23]">
      <seq>ggaaattatatgcatcgtgtgaatattaatataaagcaatagctttataatagaattaagaagaaaagacgagcaacaagttagtaatttccaccataaatggtcttcatttcaactgctgatctatgctctacagagcaggtgataacctgaaaaaacagtttgttgttgtttgtgctctttactgtacattacagacagcagagttttcaccagtctgtaatatttgctcaatgtaccatgctagtagaatccttgtgtaagaaatctgtatcatttttcctcagtcgaagttgggcttgataaggctggtactgttggaagagatgggcgtaggagaaggtatagtgctggacccaaaaaagggatcaccgacagcggaagaagccaaggaactagtctcgagttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="32415" stop="33409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32715" g_stop="33100" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E280285" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32715" e_stop="33100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTATATGCATCGTGTGAAAATTAATATAAAGCAATAGCAGTATAATAGAATTAAGAAGAAAAGACGAGCAACAAGTTAGTAATTTCCACCATAAATGGTCTTCATTTCAACTGCTGATCTATGCTCTACAGAGCAGGTGATAACCTGAAAAAACAGTTTGTTGTTGTTTGTGCTCTTTACTGTACATTACAGACAGCAGAGTTTTCACCAGTCTGTAATATTTGCTCAATGTACCATGCTAGTAGAATCCTTGTGTAAGAAATCTGTATCATTTTTCCTCAGTCGAAGTTGGGCTTGATAAGGCTGGTACTGTTGGAAGAGATGGGCGTAGGAGAAGGTATAGTGCTGGACCCAAAAAAGGGATCACCGACAGCGGAAGAA</genome_strand>
        <mrna_strand>GGAAATTATATGCATCGTGTGAATATTAATATAAAGCAATAGCTTTATAATAGAATTAAGAAGAAAAGACGAGCAACAAGTTAGTAATTTCCACCATAAATGGTCTTCATTTCAACTGCTGATCTATGCTCTACAGAGCAGGTGATAACCTGAAAAAACAGTTTGTTGTTGTTTGTGCTCTTTACTGTACATTACAGACAGCAGAGTTTTCACCAGTCTGTAATATTTGCTCAATGTACCATGCTAGTAGAATCCTTGTGTAAGAAATCTGTATCATTTTTCCTCAGTCGAAGTTGGGCTTGATAAGGCTGGTACTGTTGGAAGAGATGGGCGTAGGAGAAGGTATAGTGCTGGACCCAAAAAAGGGATCACCGACAGCGGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E735770" ref_strand="+" ref_description="SGN-E735770 [LC02DG07]">
      <seq>aatcttcttacaaccaaatcacatcggaagtaagaacaaaaaggcaagtgaaatctggcagcctaaatggtactgtattgtatgctttatactcaagagcagaaggttacgaacttcacaaaatggatctgaagtgttttaaaattgatggttgatgtatttttatctctcctaactaatgatacttcaaatcacaatggctgcagggctagggataatattttatgcaggtttatcgagtggagatgtctggaaggaattttaccaatacttcagagaaagcagattcgtccatgcgacgtcgattgatttcagtttactatcggtatttgcacccttctggatttacaatgatatgactgctccaaagtggtatgacaaaggatcttggcttcttccgctgccggtgatcccttttttgggtccagcactataccttctcctactcccatctcttccaacaataccagccttatcaatccccaacttccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="34689" stop="32699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34389" g_stop="34101" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33282" g_stop="33200" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="372" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33199" i_stop="33121" i_length="79">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33120" g_stop="32999" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="495" r_length="123" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E735770" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34389" e_stop="34101"/>
          <exon e_start="33282" e_stop="33200"/>
          <exon e_start="33120" e_stop="32999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTATAGATTTAGTAATTGTATCGATTTGGTATTGTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAATTTCCTGCATAAACTGGTAAAGCTTGTGACATTTAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCGGTTATCACACTCTACGAGAATTGCTTCAACATTTCACCAGATGTGAAAGAAATCAGTTCAGTAAAAAGTTCAACTTATACTAGAGTTCTGCTTGTTGATTTAAAATCTAAAGTTACTATTTTTTCACTCGATTTTTCTTTTCTGTGGGGATGAGGAGTGGTTGGAAAGATTGATTATAGTTCTAAGAAATATAAATCTCCCACTATTTAACAAAGGAAGTTGAATTTGGAGTCTTATCAGAAAGTGGATGGATCTTTTAGTGAGGCTTTCCCTTGTTCTCTGTCTAGTAGGTTGGTGATTCTTGTTCAAGTTTTTCACTGGAATAAAAGCAAAGATAATTGGAATGGGGAAGGATACCGTTGCAGGCAGTTAACACTGGTTAGTCGTAGGGGAGCCATTAATGCATTGGTGTGTCGATTGCTCCTTTAAGCTACTCGTGGCCCTTTTATAACTAGTGTAGACCCTATGTTAATCTTCATCTGGCTAAAAGTTGATTCGAGAATATAACTAACCCCTACTATGGCAAAAACATTTATTAGAATCTACAACTGTTTGTGTCAATTGTGCATACCTTGTATTAGACCTACATAAACCTGACATATACTTGATTTATCTGCAGGTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGCATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCGAAAGTGGTAAGCTCATGCTCATAGAAATGTAATTCCCAACCCTATGCAAAAAAAATTAATGAATAACACAGTTATATCTCACAAGGTATGACAAAGGATCTTGGCTTCTTCCGCTGTCGGTGATCCCTTTTTTGGGTCCAGCACTATACCTTCTCCTACGCCCATCTCTTCCAACAGTACCAGCCTTATCAA-GCCCAACTTCGACTG</genome_strand>
        <mrna_strand>AATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCACAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAAATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGTATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCCAAAGTG...............................................................................GTATGACAAAGGATCTTGGCTTCTTCCGCTGCCGGTGATCCCTTTTTTGGGTCCAGCACTATACCTTCTCCTACTCCCATCTCTTCCAACAATACCAGCCTTATCAATCCCCAACTTCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E336912" ref_strand="+" ref_description="SGN-E336912 [cTOE-5-H16]">
      <seq>gttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccaccacctccacctgttgaagaaactgagcttcaaaggttacctttgaatttgcttgaatctaagctaacagcagggatcacaatggctgcagggctagggataatattttatgcaagtttatcgagtggagatgtctggaaagaattttaccaatacttcagagaaagcagattcgtccatgcgacgtcgattgatttcagtttactatcggcatttgcacccttctggatttacaatgatatgactgctcgaaagtggtatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="35455" stop="32895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35155" g_stop="35009" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34716" g_stop="34548" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="316" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34547" i_stop="34200" i_length="348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34199" g_stop="34101" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="415" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33282" g_stop="33200" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="498" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E336912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35155" e_stop="35009"/>
          <exon e_start="34716" e_stop="34548"/>
          <exon e_start="34199" e_stop="34101"/>
          <exon e_start="33282" e_stop="33200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTATAGATTTAGTAATTGTATCGATTTGGTATTGTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAATTTCCTGCATAAACTGGTAAAGCTTGTGACATTTAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCGGTTATCACACTCTACGAGAATTGCTTCAACATTTCACCAGATGTGAAAGAAATCAGTTCAGTAAAAAGTTCAACTTATACTAGAGTTCTGCTTGTTGATTTAAAATCTAAAGTTACTATTTTTTCACTCGATTTTTCTTTTCTGTGGGGATGAGGAGTGGTTGGAAAGATTGATTATAGTTCTAAGAAATATAAATCTCCCACTATTTAACAAAGGAAGTTGAATTTGGAGTCTTATCAGAAAGTGGATGGATCTTTTAGTGAGGCTTTCCCTTGTTCTCTGTCTAGTAGGTTGGTGATTCTTGTTCAAGTTTTTCACTGGAATAAAAGCAAAGATAATTGGAATGGGGAAGGATACCGTTGCAGGCAGTTAACACTGGTTAGTCGTAGGGGAGCCATTAATGCATTGGTGTGTCGATTGCTCCTTTAAGCTACTCGTGGCCCTTTTATAACTAGTGTAGACCCTATGTTAATCTTCATCTGGCTAAAAGTTGATTCGAGAATATAACTAACCCCTACTATGGCAAAAACATTTATTAGAATCTACAACTGTTTGTGTCAATTGTGCATACCTTGTATTAGACCTACATAAACCTGACATATACTTGATTTATCTGCAGGTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGCATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCGAAAGTG</genome_strand>
        <mrna_strand>GTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGG............................................................................................................................................................................................................................................................................................................................................................ATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAAGTTTATCGAGTGGAGATGTCTGGAAAGAATTTTACCAATACTTCAGAGAAAGCAGATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGCATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E259733" ref_strand="+" ref_description="SGN-E259733 [cLEG-42-P7]">
      <seq>taataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgttgtctggactcatgtactatgttttcttgggtgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgacggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccaccacctccacctgttgaagaaactgagcttcaaaggttacctttgaatttgcttgaatctaagctaacagcagggggctagggataatattttatgcaggtttatcgagtggagatgtctggaaggaattttaccaatacttcagagaaagcagattcgtccatgcgacgtcgattgatttcagtttactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36001" stop="32948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35701" g_stop="35599" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="249" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34548" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="418" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34547" i_stop="34184" i_length="364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34183" g_stop="34101" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="501" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33282" g_stop="33248" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="536" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E259733" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35701" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34548"/>
          <exon e_start="34183" e_stop="34101"/>
          <exon e_start="33282" e_stop="33248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTATAGATTTAGTAATTGTATCGATTTGGTATTGTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAATTTCCTGCATAAACTGGTAAAGCTTGTGACATTTAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCGGTTATCACACTCTACGAGAATTGCTTCAACATTTCACCAGATGTGAAAGAAATCAGTTCAGTAAAAAGTTCAACTTATACTAGAGTTCTGCTTGTTGATTTAAAATCTAAAGTTACTATTTTTTCACTCGATTTTTCTTTTCTGTGGGGATGAGGAGTGGTTGGAAAGATTGATTATAGTTCTAAGAAATATAAATCTCCCACTATTTAACAAAGGAAGTTGAATTTGGAGTCTTATCAGAAAGTGGATGGATCTTTTAGTGAGGCTTTCCCTTGTTCTCTGTCTAGTAGGTTGGTGATTCTTGTTCAAGTTTTTCACTGGAATAAAAGCAAAGATAATTGGAATGGGGAAGGATACCGTTGCAGGCAGTTAACACTGGTTAGTCGTAGGGGAGCCATTAATGCATTGGTGTGTCGATTGCTCCTTTAAGCTACTCGTGGCCCTTTTATAACTAGTGTAGACCCTATGTTAATCTTCATCTGGCTAAAAGTTGATTCGAGAATATAACTAACCCCTACTATGGCAAAAACATTTATTAGAATCTACAACTGTTTGTGTCAATTGTGCATACCTTGTATTAGACCTACATAAACCTGACATATACTTGATTTATCTGCAGGTCCATGCGACGTCGATTGATTTCAGTTTACTATC</genome_strand>
        <mrna_strand>TAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTTGTCTGGACTCATGTACTATGTTTTCTTGGGTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGACGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGG............................................................................................................................................................................................................................................................................................................................................................................GGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCGACGTCGATTGATTTCAGTTTACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E484034" ref_strand="+" ref_description="SGN-E484034 [cSTE-11-H24]">
      <seq>cgatgtgtctcatgccaaagaatatgggacttaaattttgttatattataagaatgttaaaattcttcttacaaccaaatcacatcggaagtaagcacaaaaggcaagtgaaatctggcagcctaaatggtactgtattgtatgctttgtagtcaagagcagaaggttacgaacttcagaaatggatctgaagtgttttaaaattgatggttgacgtatttttctctctcctaactaatgatacttcagatcacaatggctgcagggctagggataatattttatgcaggtttatcaagtggagatgtctggaaggaattttaccaatacttcagagaaagcagattcgtaagtttctcctttaatgtgtacgttcatatgatgcaacattctttatcatgttactatagattaagtagttgtatcgatgtggtattggttggtctttggagtaatgatcagattatagtgctaccctcagtttcctgcataaactggtaaagcttgtgacattcaaaagagcaatcagttaactggtccagaaggccgttatcacacactaagagaattgcttcaacatttcaccagatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="34749" stop="33555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34449" g_stop="33855" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E484034" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34449" e_stop="33855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATA-TATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTATAGATTTAGTAATTGTATCGATTTGGTATT-GTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAATTTCCTGCATAAACTGGTAAAGCTTGTGACATTTAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCGGTTATCACACTCTACGAGAATTGCTTCAACATTTCACCAGATGTGAA</genome_strand>
        <mrna_strand>CGATGTGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATTATAAGAATGTTAAAATTCTTCTTACAACCAAATCACATCGGAAGTAAGCAC-AAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTGTAGTCAAGAGCAGAAGGTTACGAACTTCAG-AAATGGATCTGAAGTGTTTTAAAATTGATGGTTGACGTATTTTTCTCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCAAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTTAATGTGTACGTTCATATGATGCAACATTCTTTATCATGTTACTATAGATTAAGTAGTTGTATCGATGTGGTATTGGTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAGTTTCCTGCATAAACTGGTAAAGCTTGTGACATTCAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCCGTTATCACACACTAAGAGAATTGCTTCAACATTTCACCAGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E483969" ref_strand="+" ref_description="SGN-E483969 [cSTE-11-J9]">
      <seq>cgatgtgtctcatgccaaagaatatgggacttaaattttgttatatataagaatgttaaaattcttcttacaaccaaatcacatcggaagtaagcacaaaaggcaagtgaaatctggcagcctaaatggtactgtattgtatgctttgtactcaagagcataaggttacgaacttcacaaatggatctgaagtgttttaaaattgatgggtgacgtatttttctctctcctaactaatgatacttcagatcacaatggctgcagggctagggataatattgtatgcaggtttatcaactggagatgtctggaaggaattgtaccaatacttcacagaaagcagattcgtaagcttctactttaatgtggacgttcatatgatgcaacattctttatcatgtgactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="34749" stop="33741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34449" g_stop="34041" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E483969" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34449" e_stop="34041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTAT</genome_strand>
        <mrna_strand>CGATGTGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAAATTCTTCTTACAACCAAATCACATCGGAAGTAAGCAC-AAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTGTACTCAAGAGCATAAGGTTACGAACTTCA-CAAATGGATCTGAAGTGTTTTAAAATTGATGGGTGACGTATTTTTCTCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTGTATGCAGGTTTATCAACTGGAGATGTCTGGAAGGAATTGTACCAATACTTCACAGAAAGCAGATTCGTAAGCTTCTACTTTAATGTGGACGTTCATATGATGCAACATTCTTTATCATGTGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E319110" ref_strand="+" ref_description="SGN-E319110 [cTOB-16-C7]">
      <seq>ttccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccaccacctccacctgttgaagaaactgagcttcaaaggttacctttgaatttgcttgaatctaagctaacagcaggggtaaggaattctttcatttgacaactacgtaacttctctatgtccttataactgggatggagggatatgtctgaaatagagtaagaatatccaaccctcgatgcgtctcatgccaaagaatatgggacttaaattttgttatatataagaatgttaagaatcttcttacaaccaaatcacatcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="35400" stop="34060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35100" g_stop="35009" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34716" g_stop="34360" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="449" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E319110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35100" e_stop="35009"/>
          <exon e_start="34716" e_stop="34360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAG</genome_strand>
        <mrna_strand>TTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328627" ref_strand="+" ref_description="SGN-E328627 [cTOC-23-H18]">
      <seq>ctaattccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatactgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccaccacctccacctgttgaagaaactgagcttcaaaggttacctttgaatttgcttgaatctaagctaacagcaagggtaanggattctttcatttgacaactacgtaacttctctatgtccttataactggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36272" stop="34191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="35599" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34491" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="746" r_length="226" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E328627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGA</genome_strand>
        <mrna_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATACTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAAGGGTAANGGATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328784" ref_strand="+" ref_description="SGN-E328784 [cTOC-23-H24]">
      <seq>ctaattccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatactgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaacaccacctccacctgttgaagaaactgagcttcaaaggttacctttgaatttgcttgaatctaagctaacagcaggggtaaggaattctttcatttgacaactacgtaacttctctatgtcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36272" stop="34200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="35599" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34500" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="736" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E328784" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTA</genome_strand>
        <mrna_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATACTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAA-CACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E326618" ref_strand="+" ref_description="SGN-E326618 [cTOC-17-K13]">
      <seq>ctaattccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatactgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattgtgctctctggaaaccacacctccacctgttgaagaactgagcttcaaggttacctttgaatttgcttgaatctaagctaacagcaggggtaatgaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36272" stop="34236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="35599" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34536" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="698" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E326618" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCT</genome_strand>
        <mrna_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATACTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTGTGCTCTCTGGAAACCA-CACCTCCACCTGTTGAAG-AACTGAGCTTC-AAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAATGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E418335" ref_strand="+" ref_description="SGN-E418335 [STM-27-E16]">
      <seq>gtactctcaagagtcaacatgttagctaattccagcctcatctcttcaaacttctctactttactatttcttagaaatcagaaagttgccacaagaatttcattcccaaacagtgacaaaatcaagaatccacccaagactcaatttttcaacaattcaatctcaggatttggggtaaagggtcgtctttatgtatgtcatagttcattaaatcttcaaaatcaacaagacccatctatggaaaaagatgtagatggttctacaaaggagaatgagcttggtggtggaagtaataatggaggaaatggagaccaatgggattggacgacgtcgttcgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagatcccgttgacagacatgtatttcttaaaaaagctccttaatttgaaaggagatgatggcttccagatgaatgaagtgctagtgggactttggtatatatgggtttgtggccattagtttacagtatgctgctccttcctaccgctagaagttccaaagcagtattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccaccacctncacctgttgaagaaactgagcttcaaggttgcctttgaatttgctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36284" stop="34266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35984" g_stop="35599" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="402" r_length="389" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="547" r_length="145" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34566" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="696" r_length="149" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E418335" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35984" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACATGTTAGCTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAG---TAAT------AATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAA</genome_strand>
        <mrna_strand>TCAACATGTTAGCTAATTCCAGCCTCATCTCTTCAAACTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCCACAAGAATTTCATTCCCAAACAGTGACAAAATCAAG---AATCCACCCAAGACTCAATTTTTCAACAATTCAATCTCAGGATTTGGGGTAAA-GG--GTCGTCTTTATGTATGTCATAGTTCATTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATGTAGATGGTTCTACAAAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGGAAATGGAGACCAATGGGATTGGACGACGTCGTTCGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGATCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACATGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGCTTCCAGATGAATGAAGTGCTAGTGGGACTTTGGTATAT-ATGGGTTTGTGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACCGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCCAAA-GCAGTATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTNCACCTGTTGAAGAAACTGAGCTTC-AAGGTTGCCTTTGAATTTGCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328087" ref_strand="+" ref_description="SGN-E328087 [cTOC-22-H5]">
      <seq>ctaattccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatactgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaaccacaccctcacctgttgaagaaactgagcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36272" stop="34291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="35599" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="520" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34591" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="645" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E328087" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCA</genome_strand>
        <mrna_strand>CTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATACTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCA-CACCCTCACCTGTTGAAGAAACTGAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E277001" ref_strand="+" ref_description="SGN-E277001 [cLEN-22-H10]">
      <seq>aaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattccttattttgctctctggaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36190" stop="34323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35890" g_stop="35599" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="438" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34623" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="532" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E277001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35890" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCA</genome_strand>
        <mrna_strand>AAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E292970" ref_strand="+" ref_description="SGN-E292970 [cLET-12-K5]">
      <seq>agcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaaaaggcggcattcctgtttggccttttcttgtactttcatgctttggtggtgcatatgttctcattcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36264" stop="34342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35964" g_stop="35599" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="512" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34642" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="587" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E292970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35964" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTA</genome_strand>
        <mrna_strand>AGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E256034" ref_strand="+" ref_description="SGN-E256034 [cLEG-35-N9]">
      <seq>tccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggtttatggccattagtttacagtatgctgctccttcctactgctagaagttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36267" stop="34705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35967" g_stop="35599" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35009" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="514" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34716" g_stop="34712" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="519" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E256034" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35967" e_stop="35599"/>
          <exon e_start="35154" e_stop="35009"/>
          <exon e_start="34716" e_stop="34712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAGGTAACTTCTTGGCCACCCTTGCTTCAAGTCATTTTTCTGGCTTAAGCCACAGAATATGACAAGTCACCTCACATTCTCCTCCGAGGAGACTAAAGATCTACAACAGTTGTATAGTTCTTAATTTTTCTAGTTTGGCTCTATTTATAATTTGACATTAAGTTGCTTGGAATGATCAAGTGCTTATGTGCAATTCAAACATTCTAGAATAATACCTCGTTCAAAATTGTCCAAATTTTCTTGTTTGAACTGACAAAAGATTCAGTTATCTGATATTGAACCTTTGTTTCTGCAGTTCAA</genome_strand>
        <mrna_strand>TCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTT-AAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG....................................................................................................................................................................................................................................................................................................TTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E256265" ref_strand="+" ref_description="SGN-E256265 [cLEG-37-P21]">
      <seq>tccagcctcatctcttcaaatttctctactttactatttcttagaaatcagaaagttgctactagaatttcattagcaaactgtgacaaaatcaagaaaaatccacccaagactcaatttttaaaaactcaatctcacgatttggggtaaagggtagtcttctttatgtatgtcatagttcgttaaatcttcaaaatcaacaagacccatctatggaaaaagatttagctggttctacagaggagaatgagcttggtggtggaagtaataatggagaccaatgggattggacgacgtcgtttgtactgtttggcttgtggtctggactcatgtactatgttttcttccttgctcctaaccagaccccgttgacagacgtgtatttcttaaaaaagctccttaatttgaaaggagatgatggattccgtatgaatgaagtgctagtgggactttggtatatcatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36267" stop="34756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35967" g_stop="35599" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35154" g_stop="35056" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="467" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E256265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35967" e_stop="35599"/>
          <exon e_start="35154" e_stop="35056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCGGTACCATATCGTATTTTGCTTCTGAATATTCTCTTTTTATAATTTCTTTAGTTTTTTTGGCATTGTCTAGTTCCATTTTCAGTATTGTTCTGCTACTATCTTAGCTTACATAGTTGTGTTTTCTAATGTTTTACTTGAGACAAGGGTCTATTGGAACTATCATCCCTACTTTCACAAGGTAGGGATAAATAAAGCTATGAACACACCATCCTCCCCAGACCTTATTTTTGGGATTATACTGAATGAATGTGTTATTATTGTTGTTGTTCAAAGCATTTAAGAGGCAATTGCAAGCAAATAGTTCTTGAGTGTGCTCACAAGTGATTGAAATAACAAATTATGACAGAAACGCTTGTACGCCTTTAAGAACATGATGCTTATTTGCTTCTCTCTTTGAAACTCTCCACTTTGTATTGTGTTTATTCTTAGTCCTTGTGATTGCAGTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGT</genome_strand>
        <mrna_strand>TCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTT-AAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E392598" ref_strand="+" ref_description="SGN-E392598 [TUS-35-D9]">
      <seq>caatggcggaagttactaaaattctccaaccagttcttcttcctcctttcttccataaactagacggaaccactaattcccattttagattgtgtagaagaaacagacgcaacatcagtatccgttgttcttcaatttctacaactgaaactaacaaatccacaaagactcagaacattccatggggttgcgagactgattctatagaaaatgcgtccaatttgcagaaatggttgacggaatcagggcttcctgctcaaaaattggacttacaaagagtgaatgttggagaaagaggacttgttgctaacaacaatattaggaaaggggaaaggctgctttttgttcctccttcacttgtcatcactgctgattcgaaatggagcaattcagatgctggtgatgttttaaaacaatataatgtaccagattggccttttattgctacatatttaataagtgaggcaagcctcatgaagtcttcaagatggagcaactacatatctgccttgcctaggcagccttactctctcttatactggactcaatcggagttagataggtacttggaagcatcacaaataagacagcgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36381" stop="39294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36681" g_stop="37057" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38654" g_stop="38817" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="541" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38940" g_stop="38994" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="596" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E392598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36681" e_stop="37057"/>
          <exon e_start="38654" e_stop="38817"/>
          <exon e_start="38940" e_stop="38994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCGGTAAATTTTATCATCACTTGTCATTGCTGCCGATTCAGCAATTTTGTCAATTTGTTAGGGTCAGTATAGAATAAAGTGTAGTAGTATTGTACTGATTAGTTATGCAGTTTGCTGGGATTGAATATGCTCGCATAGTTGTACTTTTTGAAATAACTGTATAATTCATATCCCAAATTGTAAGTTCAGGGAGAAATTTAAGGAGGGAATTTCACTAATGTTCTGGTGCTGCTTATCACATCCTAATTACGGTCTAGAAGCCTGAGTAACCAACTGAGGTGAAAGCCTTGAGCATGTAAAGTGAAATGCGACAATCTAACAATTGAAATGATCCTCTTCATTGACTAGTTTCAGTGAACAACAAAAGGAGCATGTTTACAGGCTTTAAATGTAATTTGCTCCGACAGATGAAGTACTTATGGGTAATACGAAAGGATGAGGAAAAAACATGCACATGAAATTAAATTTCATTACCTGCCTGCTATAGAAGCTATATAGGTGAAGGTCAATTAGTCTAGAAACAGGACGTTGATATGCTTCGACCTAATTTCTTGACATCTTAATGTATCTCATGCTAGGTATCTAAGTTGGACTGTTAGGAAGTGGAAATATATTTTAAACCTTGATTTCCACGGTCATCATTTGCTAATACGCTAATGTTTCCACTGATTGTTGCCTCAACTCTGAATTATATAGTTTATAGCCCCTATCTTGTAGGAGATGGTTGTGTGGTATGTTGCGTAGTATAAAAACCTTGAGAACATGTTCACATTCCAGCTACGACATATATCGACTTATGCATGTGCACAAGATACCGACATCACACATACATGCATGCATGTGTACACGTGCCAGCGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAGATGCCAGAAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTGGTAAGCCTCTTCCACTGATTTTGGTGTCCTCCAAATCTTGATAAAACTTGAGACTTCTTCCTTTACAACGTAAATGGCACATGCTCAATAAGTCCCCCTACAGCTTCTCCATGTCTTTTCAGGACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAATAAGACAGCGGGCG</genome_strand>
        <mrna_strand>CAATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG..........................................................................................................................GACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAATAAGACAGCGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E275141" ref_strand="+" ref_description="SGN-E275141 [cLEN-9-J15]">
      <seq>aatggcggaagttactaaaattctccaaccagttcttcttcctcctttcttccataaactagacggaaccactaattcccattttagattgtgtagaagaaacagacgcaacatcagtatccgttgttcttcaatttctacaactgaaactaacaaatccacaaagactcagaacattccatggggttgcgagactgattctatagaaaatgcgtccaatttgcagaaatggttgacggaatcagggcttcctgctcaaaaattggacttacaaagagtgaatgttggagaaagaggacttgttgctaacaacaatattaggaaaggggaaaggctgctttttgttcctccttcacttgtcatcactgctgattcgaaatggagcaattcagatgctggtgatgttttaaaacaatataatgtaccagattggccttttattgctacatatttaataagtgaggcaagcctcatgaagtcttcaagatggagcaactacatatctgccttgcctaggcagccttactctctcttatactggactcaatcggagttagataggtacttggaagcatcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36382" stop="39280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36682" g_stop="37057" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38654" g_stop="38817" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="540" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38940" g_stop="38980" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="581" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E275141" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36682" e_stop="37057"/>
          <exon e_start="38654" e_stop="38817"/>
          <exon e_start="38940" e_stop="38980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCGGTAAATTTTATCATCACTTGTCATTGCTGCCGATTCAGCAATTTTGTCAATTTGTTAGGGTCAGTATAGAATAAAGTGTAGTAGTATTGTACTGATTAGTTATGCAGTTTGCTGGGATTGAATATGCTCGCATAGTTGTACTTTTTGAAATAACTGTATAATTCATATCCCAAATTGTAAGTTCAGGGAGAAATTTAAGGAGGGAATTTCACTAATGTTCTGGTGCTGCTTATCACATCCTAATTACGGTCTAGAAGCCTGAGTAACCAACTGAGGTGAAAGCCTTGAGCATGTAAAGTGAAATGCGACAATCTAACAATTGAAATGATCCTCTTCATTGACTAGTTTCAGTGAACAACAAAAGGAGCATGTTTACAGGCTTTAAATGTAATTTGCTCCGACAGATGAAGTACTTATGGGTAATACGAAAGGATGAGGAAAAAACATGCACATGAAATTAAATTTCATTACCTGCCTGCTATAGAAGCTATATAGGTGAAGGTCAATTAGTCTAGAAACAGGACGTTGATATGCTTCGACCTAATTTCTTGACATCTTAATGTATCTCATGCTAGGTATCTAAGTTGGACTGTTAGGAAGTGGAAATATATTTTAAACCTTGATTTCCACGGTCATCATTTGCTAATACGCTAATGTTTCCACTGATTGTTGCCTCAACTCTGAATTATATAGTTTATAGCCCCTATCTTGTAGGAGATGGTTGTGTGGTATGTTGCGTAGTATAAAAACCTTGAGAACATGTTCACATTCCAGCTACGACATATATCGACTTATGCATGTGCACAAGATACCGACATCACACATACATGCATGCATGTGTACACGTGCCAGCGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAGATGCCAGAAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTGGTAAGCCTCTTCCACTGATTTTGGTGTCCTCCAAATCTTGATAAAACTTGAGACTTCTTCCTTTACAACGTAAATGGCACATGCTCAATAAGTCCCCCTACAGCTTCTCCATGTCTTTTCAGGACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAA</genome_strand>
        <mrna_strand>AATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG..........................................................................................................................GACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E269460" ref_strand="+" ref_description="SGN-E269460 [cLEM-2-O12]">
      <seq>ggaagttactaaaattctccaaccagttcttcttcctcctttcttccataaactagacggaaccactaattcccattttagattgtgtagaagaaacagacgcaacatcagtatccgttgttcttcaatttctacaactgaaactaacaaatccacaaagactcagaacattccatggggttgcgagactgattctatagaaaatgcgtccaatttgcagaaatggttgacggaatcagggcttcctgctcaaaaattggacttacaaagagtgaatgttggagaaagaggacttgttgctaacaacaatattaggaaaggggaaaggctgctttttgttcctccttcacttgtcatcactgctgattcgaaatggagcaattcagatgctggtgatgttttaaaacaatataatgtaccagattggccttttattgctacatatttaataagtgaggcaagcctcatgaagtcttcaagatggagcaactacatatctgccttgcctaggcagccttactctctcttatactggactcaatcggagttagataggtacttggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="36388" stop="39273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36688" g_stop="37057" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38654" g_stop="38817" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="534" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38940" g_stop="38973" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="568" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E269460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36688" e_stop="37057"/>
          <exon e_start="38654" e_stop="38817"/>
          <exon e_start="38940" e_stop="38973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCGGTAAATTTTATCATCACTTGTCATTGCTGCCGATTCAGCAATTTTGTCAATTTGTTAGGGTCAGTATAGAATAAAGTGTAGTAGTATTGTACTGATTAGTTATGCAGTTTGCTGGGATTGAATATGCTCGCATAGTTGTACTTTTTGAAATAACTGTATAATTCATATCCCAAATTGTAAGTTCAGGGAGAAATTTAAGGAGGGAATTTCACTAATGTTCTGGTGCTGCTTATCACATCCTAATTACGGTCTAGAAGCCTGAGTAACCAACTGAGGTGAAAGCCTTGAGCATGTAAAGTGAAATGCGACAATCTAACAATTGAAATGATCCTCTTCATTGACTAGTTTCAGTGAACAACAAAAGGAGCATGTTTACAGGCTTTAAATGTAATTTGCTCCGACAGATGAAGTACTTATGGGTAATACGAAAGGATGAGGAAAAAACATGCACATGAAATTAAATTTCATTACCTGCCTGCTATAGAAGCTATATAGGTGAAGGTCAATTAGTCTAGAAACAGGACGTTGATATGCTTCGACCTAATTTCTTGACATCTTAATGTATCTCATGCTAGGTATCTAAGTTGGACTGTTAGGAAGTGGAAATATATTTTAAACCTTGATTTCCACGGTCATCATTTGCTAATACGCTAATGTTTCCACTGATTGTTGCCTCAACTCTGAATTATATAGTTTATAGCCCCTATCTTGTAGGAGATGGTTGTGTGGTATGTTGCGTAGTATAAAAACCTTGAGAACATGTTCACATTCCAGCTACGACATATATCGACTTATGCATGTGCACAAGATACCGACATCACACATACATGCATGCATGTGTACACGTGCCAGCGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAGATGCCAGAAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTGGTAAGCCTCTTCCACTGATTTTGGTGTCCTCCAAATCTTGATAAAACTTGAGACTTCTTCCTTTACAACGTAAATGGCACATGCTCAATAAGTCCCCCTACAGCTTCTCCATGTCTTTTCAGGACTCAATCGGAGTTAGATAGGTACTTGGAAGCA</genome_strand>
        <mrna_strand>GGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG..........................................................................................................................GACTCAATCGGAGTTAGATAGGTACTTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E687994" ref_strand="+" ref_description="SGN-E687994 [T3_tus_81_P21]">
      <seq>tgcacacactgtcactgtagccctctccacctagaaggagttcaataactagatgggatctatcatttactccaaatttttttcttccaaaaggttatactagccgcacatgcatatcgcatctcttaacaaataaagttgaattcctttctacaacagatacttcttatacttaacatagcactgaattattttaccttgtttgtattcttagacatatactattagtgcagctcagagacaaaatggttacaaatggaacttaactgttacttaaataattatctaactagaggtaatggaagaaatagttatattaaaatcttttagagtttctggtttatatactaagcctatacatgtgcaactgtaggttctatagtaatataagtaactgcaagatgagggtgttttgtttctccttctttagttgtggttggttcagtgaagaggaaaaatgaacaaagggaaacagtgttgcatgtgtttaaaaatggttgatgtttagatacttaaacttacatttccaacattgtttgtttttgagagaagacacgagctctccaggttggatcaataatcagcttcccaatcaggcaaatcagatgggagggacatatcttgattcttagttttgtaatctaatatggatttgggtcttaattaaaacaaaatatacaaatacagattttggtaccaacagaagttttttttctttatcttgatatgtgctggaaatgccaaaaatggaacaattcaaatgctgggggatgttttaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="37611" stop="38993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37910" g_stop="38693" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E687994" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37910" e_stop="38693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAGATGCCAGAAATGGAGCAATTCAGATGCT-GGTGATGTTTTAAAACAAT</genome_strand>
        <mrna_strand>TGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAAATGCCAAAAATGGAACAATTCAAATGCTGGGGGATGTTTTAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328903" ref_strand="+" ref_description="SGN-E328903 [cTOC-24-D17]">
      <seq>gcacacactgtcactgtagccctctccacctagaaggagttcaataactagatgggatctatcatttactccaaatttttttcttccaaaaggttatactagccgcacatgcatatcgcatctcttaacaaataaagttgaattcctttctacaacagatacttcttatacttaacatagcactgaattattttaccttgtttgtattcttagacatatactattagtgcagctcagagacaaaatggttacaaatggaacttaactgttacttaaataattatctaactagaggtaatggaagaaatagttatattaaaatcttttagagtttctggtttatatactaagcctatacatgtgcaactgtaggttctatagtaatataagtaactgcaagatgagggtgttttgtttctccttctttagttgtggttggttcagtgaagaggaaaaatgaacaaagggaaacagtgttgcatgtgtttaaaaatggttgatgtttagatacttaaacttacatttccaacattgtttgtttttgagagaagacacgagctctccaggttggatcaataatcagcttcccaatcaggcaaatcagatgggagggacatatcttgattcttagttttgtaatctaatatggatttgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="37611" stop="38868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37911" g_stop="38568" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E328903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37911" e_stop="38568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTC</genome_strand>
        <mrna_strand>GCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E429094" ref_strand="+" ref_description="SGN-E429094 [STM-51-O6]">
      <seq>cttggaagcatcacaaataagacaacgggcggttgaaaggataaataacgtcattggaacgtacaatgacttgaggctcagaatattttccaggcatcctgatttatttcctgaagagatattcaacatagagactttcaactggtcatttggaattctcttttcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaacatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtgagcaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcggaaagttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaataaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttatttctcgatagttgtgaatctagcatatcaaagtattccaaattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="38664" stop="45614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38964" g_stop="39023" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40437" g_stop="40494" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="118" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567">
            <donor d_prob="0.495" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41062" g_stop="41115" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="172" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="244" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41521" g_stop="41601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="325" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="498" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44997" g_stop="45099" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="601" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45187" g_stop="45314" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="730" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E429094" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38964" e_stop="39023"/>
          <exon e_start="40437" e_stop="40494"/>
          <exon e_start="41062" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41601"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45099"/>
          <exon e_start="45187" e_stop="45314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAAGCATCACAAATAAGACAGCGGGCGGTTGAAAGGATAAATAACGTCATTGGAACGTAAGGCTTCTTTACTCAATTTCTCAGATGTCATAATTTGAACTAGTTTTCGGGTGTGTTTGGTATGAAGGAAAATGTTATCCATGGAAAAAAATTTCTTGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGATGAGTAGAAAATATTTTCCGGAAATGATTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTAAAAAGACATCTTTTATTTTTACTAGAGTAGAAAATAATTTATGAAATTGAAAATATTTTTTAAAAACAATTTTTATTTGGGGTGATGGTGGGGGGTGGGGGTGGGGTGGGTGAGGGGGTAGGAGTGAAAAAATAAAAAATTGAACTTAATAGTATTTTTTAAAAAAAAATCAATTTTTTGGGGGGTTGGGGGGGGGCGGTGGTGGGGGGGGGTCAGGGATCGGGTAAAAAAAATAAAATTTTAAAATTGAATTTTTAAAAAAAAAATTGTTGTTTTTCCCAAAAAATGTAAGTTAAAATTGGAGAGTTTTGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTAATTTTGAGGAAAATGAGTTGATTTGGAAAACATTTTCCAAAACTTTTGTCCCAACCAAACATGAGAAACACACTCTTAAGCCTACTTCTTTTTCGGAAAAAAAACTTTTGGTCACTCTATTATTAGCTTCGGTTCTCGCGACATTGATGGCGGAGACAAGATTTTTTCACTAAGGAGGTTCAAACTATTAAGAATAAACACGCGAAGAAGCCAAAGGAGATTTAACATTTACTATATGCATTAATTTTTTATTTTTTCCGAACAATGTATAAACATAATTTAACAATGTCCGCTGAAGGGGGTTCATCCCCTACTGGCTCCACCCCCACGTGACAGACACCTGATTAGGAACACATTACCCTGATTATTTGTAATGTCTCATTGGTCTCTCCATTAACACATTCCTGCAAAAGCACATGGACTTGATTATTTAGTATATGGCCATTGCATGCTTCAGTAAGGGTGGGCTGTTTTAATGAGGAGGAAGATAATCAATTGAGGTCAGACGAATGAACAACATGCCAAATAAACTACAATCTTCATGACACAAAGAAAAAGTACCAAAAATACCACACATTTAGCATATGATGCTACAGTCACATTGTATAATAGTATATTTGTTCATTGGATTTGCAAGAATCTGTCGCTACGGGACCAAAAGTGAACATCCAAAATAATTGAATGTTAAACATGATTAGTCGGATACCACAAAGATTACACCTGAACTTGTCAAAAGCTGAAGAAAAGTAAGGTTGTATAGTTCATTTAGTTTCATCGAGAGAAGTTGTGTTCATTTGCTTTTCAACGTTGTCTACTTGTCTTGCTAACTATTATTTGTTTCATGATCTTTGATGCAGGTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAGGTACATAAATATAATGGACAGCTAATATTTGAGTGCGGACAGAATTCATCTCTGTCATATTTTTTTGTTTCTTGGGGGTAACAATTGTCTATGTAAAGTGATAAGTTTTCACATTTCCTGGAGTTTATTTTATATAATCTACTTTTGGCTTCAAATTGGATGACTACATAGTCGTGTGGTAATGTTGATTTGATTCTGTATCAAGAACCATATTCTTGGACCAAGTGGAGCAATCAAATGGTCAAGCTTCTTTTCAACTGACTGCTTGTTTCACAATAAACCATCATACTTCCATCTTGAAATAAGAGGTTTATAAATGAATTCTGCACAATATAGATCATCAGACTGCTTCTTATATTCACCAAGATCAGCACTTCCTAGAACTGATTGGACGTGTTGTGGAAAGAATGTACATCCTGCAAGTACTTTGGTTGTCTGGAGAAGTTGAGAGATGCATTATTTTTATACAATTAACTAGAAAGTGGAGACTTTACACAGCCTATTGCTATTTTTTGTTTATTCAGTGTCATAATATTTATTAAAACAATCTGCTGCATGTTAATGCAGATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTA-TTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCT</genome_strand>
        <mrna_strand>CTTGGAAGCATCACAAATAAGACAACGGGCGGTTGAAAGGATAAATAACGTCATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATGACTTGAGGCTCAGAATATTTTCCAGGCATCCTGATTTATTTCCTGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTTTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCGGAAAGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAATAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E481908" ref_strand="+" ref_description="SGN-E481908 [cSTD-20-G5]">
      <seq>cttggaagcatcacaaataagacaacgggcggttgaaaggataaataacgtcattggaacgtacaatgacttgaggctcagaatattttccaggcatcctgatttatttcctgaagagatattcaacatagagactttcaactggtcatttggaattctcttttcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaacatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtgagcaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcggaaagttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaataaggcaacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="38664" stop="45519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38964" g_stop="39023" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40437" g_stop="40494" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="118" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567">
            <donor d_prob="0.495" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41062" g_stop="41115" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="172" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="244" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41521" g_stop="41601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="325" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="498" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44997" g_stop="45099" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="601" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45187" g_stop="45219" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="634" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E481908" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38964" e_stop="39023"/>
          <exon e_start="40437" e_stop="40494"/>
          <exon e_start="41062" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41601"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45099"/>
          <exon e_start="45187" e_stop="45219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAAGCATCACAAATAAGACAGCGGGCGGTTGAAAGGATAAATAACGTCATTGGAACGTAAGGCTTCTTTACTCAATTTCTCAGATGTCATAATTTGAACTAGTTTTCGGGTGTGTTTGGTATGAAGGAAAATGTTATCCATGGAAAAAAATTTCTTGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGATGAGTAGAAAATATTTTCCGGAAATGATTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTAAAAAGACATCTTTTATTTTTACTAGAGTAGAAAATAATTTATGAAATTGAAAATATTTTTTAAAAACAATTTTTATTTGGGGTGATGGTGGGGGGTGGGGGTGGGGTGGGTGAGGGGGTAGGAGTGAAAAAATAAAAAATTGAACTTAATAGTATTTTTTAAAAAAAAATCAATTTTTTGGGGGGTTGGGGGGGGGCGGTGGTGGGGGGGGGTCAGGGATCGGGTAAAAAAAATAAAATTTTAAAATTGAATTTTTAAAAAAAAAATTGTTGTTTTTCCCAAAAAATGTAAGTTAAAATTGGAGAGTTTTGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTAATTTTGAGGAAAATGAGTTGATTTGGAAAACATTTTCCAAAACTTTTGTCCCAACCAAACATGAGAAACACACTCTTAAGCCTACTTCTTTTTCGGAAAAAAAACTTTTGGTCACTCTATTATTAGCTTCGGTTCTCGCGACATTGATGGCGGAGACAAGATTTTTTCACTAAGGAGGTTCAAACTATTAAGAATAAACACGCGAAGAAGCCAAAGGAGATTTAACATTTACTATATGCATTAATTTTTTATTTTTTCCGAACAATGTATAAACATAATTTAACAATGTCCGCTGAAGGGGGTTCATCCCCTACTGGCTCCACCCCCACGTGACAGACACCTGATTAGGAACACATTACCCTGATTATTTGTAATGTCTCATTGGTCTCTCCATTAACACATTCCTGCAAAAGCACATGGACTTGATTATTTAGTATATGGCCATTGCATGCTTCAGTAAGGGTGGGCTGTTTTAATGAGGAGGAAGATAATCAATTGAGGTCAGACGAATGAACAACATGCCAAATAAACTACAATCTTCATGACACAAAGAAAAAGTACCAAAAATACCACACATTTAGCATATGATGCTACAGTCACATTGTATAATAGTATATTTGTTCATTGGATTTGCAAGAATCTGTCGCTACGGGACCAAAAGTGAACATCCAAAATAATTGAATGTTAAACATGATTAGTCGGATACCACAAAGATTACACCTGAACTTGTCAAAAGCTGAAGAAAAGTAAGGTTGTATAGTTCATTTAGTTTCATCGAGAGAAGTTGTGTTCATTTGCTTTTCAACGTTGTCTACTTGTCTTGCTAACTATTATTTGTTTCATGATCTTTGATGCAGGTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAGGTACATAAATATAATGGACAGCTAATATTTGAGTGCGGACAGAATTCATCTCTGTCATATTTTTTTGTTTCTTGGGGGTAACAATTGTCTATGTAAAGTGATAAGTTTTCACATTTCCTGGAGTTTATTTTATATAATCTACTTTTGGCTTCAAATTGGATGACTACATAGTCGTGTGGTAATGTTGATTTGATTCTGTATCAAGAACCATATTCTTGGACCAAGTGGAGCAATCAAATGGTCAAGCTTCTTTTCAACTGACTGCTTGTTTCACAATAAACCATCATACTTCCATCTTGAAATAAGAGGTTTATAAATGAATTCTGCACAATATAGATCATCAGACTGCTTCTTATATTCACCAAGATCAGCACTTCCTAGAACTGATTGGACGTGTTGTGGAAAGAATGTACATCCTGCAAGTACTTTGGTTGTCTGGAGAAGTTGAGAGATGCATTATTTTTATACAATTAACTAGAAAGTGGAGACTTTACACAGCCTATTGCTATTTTTTGTTTATTCAGTGTCATAATATTTATTAAAACAATCTGCTGCATGTTAATGCAGATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCA</genome_strand>
        <mrna_strand>CTTGGAAGCATCACAAATAAGACAACGGGCGGTTGAAAGGATAAATAACGTCATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATGACTTGAGGCTCAGAATATTTTCCAGGCATCCTGATTTATTTCCTGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTTTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCGGAAAGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAATAAGGCAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E270958" ref_strand="+" ref_description="SGN-E270958 [cLEM-22-C5]">
      <seq>gcggttgaaaggataaataacgtcattggaacgtacaatgacttaaggctcagaatattttccaagcatcctgatttatttcctgaagagatattcaacatagagactttcaactggtcatttggaattctcttctcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaacatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcagaatgttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagaggtgcgataaatctcaattttgcaagttaggaaacttgaaatacattcttcaattgggaaagaaagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="38692" stop="45468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38992" g_stop="39023" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40437" g_stop="40494" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="90" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41062" g_stop="41115" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="144" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="216" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41521" g_stop="41593" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="289" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41594" i_stop="44592" i_length="2999">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="462" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44997" g_stop="45168" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="634" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E270958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38992" e_stop="39023"/>
          <exon e_start="40437" e_stop="40494"/>
          <exon e_start="41062" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41593"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGTTGAAAGGATAAATAACGTCATTGGAACGTAAGGCTTCTTTACTCAATTTCTCAGATGTCATAATTTGAACTAGTTTTCGGGTGTGTTTGGTATGAAGGAAAATGTTATCCATGGAAAAAAATTTCTTGGAAAACAAGTAGATTTTGGACTTATTTTCTCATGTTTGGTTGATGAGTAGAAAATATTTTCCGGAAATGATTTTAGTGTTTGATTTATGAATGAAAAATGTTTTTAAAAAGACATCTTTTATTTTTACTAGAGTAGAAAATAATTTATGAAATTGAAAATATTTTTTAAAAACAATTTTTATTTGGGGTGATGGTGGGGGGTGGGGGTGGGGTGGGTGAGGGGGTAGGAGTGAAAAAATAAAAAATTGAACTTAATAGTATTTTTTAAAAAAAAATCAATTTTTTGGGGGGTTGGGGGGGGGCGGTGGTGGGGGGGGGTCAGGGATCGGGTAAAAAAAATAAAATTTTAAAATTGAATTTTTAAAAAAAAAATTGTTGTTTTTCCCAAAAAATGTAAGTTAAAATTGGAGAGTTTTGGAAAATGTTTTCCTTAATTTTTGAAGGGAAGTCATTTAATTTTGAGGAAAATGAGTTGATTTGGAAAACATTTTCCAAAACTTTTGTCCCAACCAAACATGAGAAACACACTCTTAAGCCTACTTCTTTTTCGGAAAAAAAACTTTTGGTCACTCTATTATTAGCTTCGGTTCTCGCGACATTGATGGCGGAGACAAGATTTTTTCACTAAGGAGGTTCAAACTATTAAGAATAAACACGCGAAGAAGCCAAAGGAGATTTAACATTTACTATATGCATTAATTTTTTATTTTTTCCGAACAATGTATAAACATAATTTAACAATGTCCGCTGAAGGGGGTTCATCCCCTACTGGCTCCACCCCCACGTGACAGACACCTGATTAGGAACACATTACCCTGATTATTTGTAATGTCTCATTGGTCTCTCCATTAACACATTCCTGCAAAAGCACATGGACTTGATTATTTAGTATATGGCCATTGCATGCTTCAGTAAGGGTGGGCTGTTTTAATGAGGAGGAAGATAATCAATTGAGGTCAGACGAATGAACAACATGCCAAATAAACTACAATCTTCATGACACAAAGAAAAAGTACCAAAAATACCACACATTTAGCATATGATGCTACAGTCACATTGTATAATAGTATATTTGTTCATTGGATTTGCAAGAATCTGTCGCTACGGGACCAAAAGTGAACATCCAAAATAATTGAATGTTAAACATGATTAGTCGGATACCACAAAGATTACACCTGAACTTGTCAAAAGCTGAAGAAAAGTAAGGTTGTATAGTTCATTTAGTTTCATCGAGAGAAGTTGTGTTCATTTGCTTTTCAACGTTGTCTACTTGTCTTGCTAACTATTATTTGTTTCATGATCTTTGATGCAGGTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAGGTACATAAATATAATGGACAGCTAATATTTGAGTGCGGACAGAATTCATCTCTGTCATATTTTTTTGTTTCTTGGGGGTAACAATTGTCTATGTAAAGTGATAAGTTTTCACATTTCCTGGAGTTTATTTTATATAATCTACTTTTGGCTTCAAATTGGATGACTACATAGTCGTGTGGTAATGTTGATTTGATTCTGTATCAAGAACCATATTCTTGGACCAAGTGGAGCAATCAAATGGTCAAGCTTCTTTTCAACTGACTGCTTGTTTCACAATAAACCATCATACTTCCATCTTGAAATAAGAGGTTTATAAATGAATTCTGCACAATATAGATCATCAGACTGCTTCTTATATTCACCAAGATCAGCACTTCCTAGAACTGATTGGACGTGTTGTGGAAAGAATGTACATCCTGCAAGTACTTTGGTTGTCTGGAGAAGTTGAGAGATGCATTATTTTTATACAATTAACTAGAAAGTGGAGACTTTACACAGCCTATTGCTATTTTTTGTTTATTCAGTGTCATAATATTTATTAAAACAATCTGCTGCATGTTAATGCAGATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTG</genome_strand>
        <mrna_strand>GCGGTTGAAAGGATAAATAACGTCATTGGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E391531" ref_strand="+" ref_description="SGN-E391531 [TUS-16-G13]">
      <seq>gaattctcttctcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaacatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtgagcaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcagaatgttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaacaaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcatatcaaagtattccaaattccttcaggcaagtggagaaatggatctcgatgtaacaaacccaaagcaactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="40796" stop="46323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41096" g_stop="41115" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="92" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41521" g_stop="41601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="173" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="346" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44997" g_stop="45099" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="449" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45187" g_stop="45318" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="581" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45978" g_stop="46023" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="627" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E391531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41096" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41601"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45099"/>
          <exon e_start="45187" e_stop="45318"/>
          <exon e_start="45978" e_stop="46023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCTCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAGGTAGTAAATTACTTCTCTCAGTACTACTGTCCTATAATCACACCAACCTGGATACCGGCATCTGCTGTTGCTTCCTTTAGCCATCATGTGGTCCTAGAGAAAAAGAAACAAAAGAGCTCTTAAAGGGATTGAAAATGATTTTGTATAGTTGAGGAGGTTTTTGTTTCTAGTTAGCTTTTGGTGTAGCTAAGGCAATCCTGTTGTATAGAATATGATGTGTCATCTGTAGAGGACCATATTCTTGTGTGTATCCTCAACTTTTTTGTTTATGGCTTGTATACAGGAATGTTTCCACTAATCACTGTGACATGGGTTGTAGAGATGATATAGAGAAGTGTACCTTTTTTGTCTGCATCTACTGCATGTATAAATTTGTTCCCTTGCATATACCTAAGCTAATATACTATCAGACTTTTTTTTAATTACCATGGTGTCTGGGACTACTTTCATACACCTCGACTAATTCCATGGATACCTATCAATTATCACATTTCACCAACAACAGGTATCATAACTTTGTCCACCAAGGCTTACGACAATGGGAAGAAATCACCTAGTACTTTTTTTCTATGCCAGGATATGAACCTGAGACCTCATGGTTCACAATTCACTTCAGCCACACCCTTGGGTGCTTTAACTATCAAATCTTCTTGTGACAGGCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAA</genome_strand>
        <mrna_strand>GAATTCTCTTCTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E206060" ref_strand="+" ref_description="SGN-E206060 [cLEC-20-F18]">
      <seq>aattctcttctcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaacatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtgagcaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcagaatgttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaacaaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="40797" stop="45594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41097" g_stop="41115" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="91" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41521" g_stop="41601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="172" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="345" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44997" g_stop="45099" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="448" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45187" g_stop="45294" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="556" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E206060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41097" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41601"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45099"/>
          <exon e_start="45187" e_stop="45294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATA</genome_strand>
        <mrna_strand>AATTCTCTTCTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E343957" ref_strand="+" ref_description="SGN-E343957 [cTOF-12-M15]">
      <seq>tcttctcacgtttggtcaggttaccctctatggatggaagagttgcgttggttccttgggcagatatgttgaatcataattgtgaggtggaaaccatttcttgactatgataaatcatcgcaaggaatcgtctttacaacagacagggcatatctgccaggtgagcaggtttttatatcatatggaaggaaatctaatggagaacttttgctttcatatggatttgttcctaaagaagggaccaatccaagcgactcagttgaggtgtcattggcacttaagaaatctgacaaatgttacaaagagaaggtggaagctctaaagaagcatggattatcagcatcagaatgttttccagtacaagttactggttggccactggagttgatggcttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaacaaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcatatcaaagtattccaaattccttcaggcaagtggagaaatggatctcgatgtaacaaacccaaagcaactaaacgaaaagagtgtttctgaaacagctagcagttgaccctgtgttacaagtgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="40802" stop="46375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41102" g_stop="41115" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244">
            <donor d_prob="0.688" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41360" g_stop="41431" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="86" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41521" g_stop="41601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="168" r_length="82" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44593" g_stop="44765" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="341" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44997" g_stop="45099" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="444" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45187" g_stop="45318" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="576" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45978" g_stop="46075" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="677" r_length="101" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E343957" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41102" e_stop="41115"/>
          <exon e_start="41360" e_stop="41431"/>
          <exon e_start="41521" e_stop="41601"/>
          <exon e_start="44593" e_stop="44765"/>
          <exon e_start="44997" e_stop="45099"/>
          <exon e_start="45187" e_stop="45318"/>
          <exon e_start="45978" e_stop="46075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCACGTTTGGTGAGTTACATACATGGTAGTCACAAAATTTGCTTGCCCTGTGATTTGTGCTGTCATTCATGTTTAGGCATCACTGAAAAAACTTGTACAATTGAGTGCAAAAATCATGATGGGGGTGTTTTTTGAGAAATGGTATACCAAAAAGAAAAAGAGATTGTGTCATCACTCTTGTGCTCGATGCAGAAGATCTACTTCATGAGAAACTATGCGGTGTTACCTAAATTTCTTTGTGTGTTAACCACAGGTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAGGTTGTGAATAACACTTCTCTGAAAATGTCTGTACTTGACATATTTGACACAACTGTTTCTGATTTCTTCAGATATTTTAATTGTTCAAGGTGGAAA-CATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAGGTACACATTATTCTGATTTTTCAAAAATGATTAGCTAAATTAATGTATTCCCAAAATTACTATTCCCCGTCCTTAAAAGTCAATAGTGAACTCAAATTAGAAAATTACCGCCCTGTGTCTTAGAGATTACCATAGACTAACAATATTTTGATTAAACTAGCTGAACTGAAATCTTTTTAGCACACCCTTTGTCACGCCCCGAGACTACCCCCTAGATGCAACACGGTGCTTAGAGCCACAAGTGACCCAAGCTAACCTCATAGCATGACACTAAGAATAGCATAAATCCACGATAAAGGATAACTGAACGTGAAGCTAACTGAAATAGTCTAACAACTCAATAGACAAAATATTTGAGTACATATAAGTGGAAGTCTAAACTATCTGTCTGAAATCCTCTACTACTGTGAGTTGCTAGGACAAGCCCATAGCTAACTCCAAATATTTGAACCTTAAAGTAATAATTGAATGAAAATGTAAGTGTTGTCCTCGGAGAGATGAGGACTCACCGATACGGCTGACTAGAGATAGTACTAACAGCGAGCTGGATACTGAGCATCAGAACCTATATTATCAAACAATGGCAGAAGGTATGTGGTTGGGGACTGATCATGAAGAAATACTTATTTACAAAGAAAAACCCACGAAGATTATAGAAAGTTCTAACTTGTAGGAATCATAAACTTGAGAAATTGGGGTTCTCTTGGGACTCAATGGTTGAAGGGATACTCATTGATGAAATCCCACATACCTAGACTTGAAACTTTGGCTTGATTCCTTCAGTGGGGACTTGAAGCTTGGAACCCTGGTTCTTACTTTGGGAGAAAACTTGAGAGAGAAGAAACTTTGATTTGGGAGAGTTAGGAGAGAATGGGAGGCTAGGGTCACTAGGAATCACTTAGGGCCCGTTTGGATGGGTTTAATAAAAGCAGCTTTAAAAAAGTATTTTTGAAAGTGCTGAATCTTATTTTTAAAATAAGCAGTTATGCGTTAAGATAAAAGTGCTGAAGTTAAAAAAAAGTTGTTGATGTGTTTGGCAAATAAGTGCTGATAAATAGCTTTTTAAATCAAAATGTCTGAAATACCCTTAAAAGCTGTTAACATAATAAAAAGTTAATTAATTTATATTTTACAGCCATAAATAATTATATTTTGCTATCATTCACATATTTCTTTCTCATCACAAATTATTTATAAGAGGAATATAAAGTAATTATAGATTTTAAAGATATATAATTTGAATAGATTAAAGAACGATTTAAGATTTTATTTTAGTTTCATCCATAGGTAATAATAATTATCTATCATTCACATATTTCTTTATTATCACAAATTATTTATAAGAGGAATATAAATTTTTATTTAAGTTATATGTGCAACTTATTTTACATATTACTTATATATAATTTGAATAGATCACTTGAAAGATGTAAGATTTATTTTATTTTCATTCATTAGTAATAGTAATTGTCTATCATCCACATGTGAAAAGGGAAAAATAGAAGAAAGAGATGTTAGGGTTATGTCGGTAATTTGGAGATTGTATAAAAATATTAAGGGCAAAAAGGTAAAACTGTGGTCAACTTAAAACAGCTTATAAGCTGAAAAAAGAAAAGCACTCCTACCCCAGTTTTTAACTTTTGGTTTAAAATAAGTTTTTTTTAACTTAAAATAAGTTATTTTGAGTATTGCCAAACAGTTAAATAAGTCAAAAACCAGCTTTTAAGTCAGTTTGACCAGCTTTTAAGCTGAGCCAAACAGGCTCTTAATCCCACTTAGAATAGGTCAAACAACATCGTATAGAAATCAAAAGAGTGGAAAAAGACCGAATTAACTATGATTTAAAACTGACGGAGGCCATCTATGGATGCCTTCCATGGTCCATATATCACTCCACGGTCCGTGGCAGTGCTCGTAAATGGAAAGGAAATTCTGAGTTATGAGGGTCAACTCCACGGACACTTCTGCGGTCCGCAGAACTCTATACGGGGCTGTACAACTACTTGTAAAGATAGGGAATTATGGGGGTTTGACGTCTTGTATACAGACCAATCTACAACCCGTGATAACTTCTATGGTCCTCAGAATGCTCCGTGAACCTTTCTAAGAAATTTTCCAATCTTGAGCTCTGGTCTATGGATCCCATCAGTCTGTGAATGGGTCTGTACTGAGTATGTAAGATAATGCATGATAAAATGATAACTGAACATGAAGTATTTTTAAAACATGCTGACGAAATGACCATCGTAATTATCGATTTTTGACTGAAACATAACATAAACACTAGCTCTGCTGATGCGATCACAAGTACAAGCTTGATCAATCTCATTGCTGATAAAACATCTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGCGTGAGTACTTTGGTTATATGGGGTGGTCCACATGACAGTGAAATAGATACTTGTGGATATATTATTTCTCTAATTTGAGTCATTTCTGAAAAAAAAATGTAAAAACCTTCTCTCTATGGTTTTGTTGTCATAAGTAAAAAAGAAAAAAGTAATGATGTTCATAGATTTTTATGTCTTTATTGTTTATGTTTAAAAAACACTAACTTGCAAATTCTCGTTGACCTTGAACAGATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAGGTAGTAAATTACTTCTCTCAGTACTACTGTCCTATAATCACACCAACCTGGATACCGGCATCTGCTGTTGCTTCCTTTAGCCATCATGTGGTCCTAGAGAAAAAGAAACAAAAGAGCTCTTAAAGGGATTGAAAATGATTTTGTATAGTTGAGGAGGTTTTTGTTTCTAGTTAGCTTTTGGTGTAGCTAAGGCAATCCTGTTGTATAGAATATGATGTGTCATCTGTAGAGGACCATATTCTTGTGTGTATCCTCAACTTTTTTGTTTATGGCTTGTATACAGGAATGTTTCCACTAATCACTGTGACATGGGTTGTAGAGATGATATAGAGAAGTGTACCTTTTTTGTCTGCATCTACTGCATGTATAAATTTGTTCCCTTGCATATACCTAAGCTAATATACTATCAGACTTTTTTTTAATTACCATGGTGTCTGGGACTACTTTCATACACCTCGACTAATTCCATGGATACCTATCAATTATCACATTTCACCAACAACAGGTATCATAACTTTGTCCACCAAGGCTTACGACAATGGGAAGAAATCACCTAGTACTTTTTTTCTATGCCAGGATATGAACCTGAGACCTCATGGTTCACAATTCACTTCAGCCACACCCTTGGGTGCTTTAACTATCAAATCTTCTTGTGACAGGCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAAC-AGAAGAGTGTTTCTGAAACAGCTAGCAGTTGA-CCTGTG-TACAAGTGAGCG</genome_strand>
        <mrna_strand>TCTTCTCACGTTTG....................................................................................................................................................................................................................................................GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG.........................................................................................GTGGAAACCATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC.......................................................................................................................................................................................................................................ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACGAAAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCCTGTGTTACAAGTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E479609" ref_strand="+" ref_description="SGN-E479609 [cSTD-10-L1]">
      <seq>ctcatacaaataatacaaaagcaataaattactattacaacaaacacatgacaaattaataagcaagataaacagtaaaatataactgagtctccacaccatctgtttgttgatttgcagctggagaagtcttgacagtagcaaatcccttagcatttacatactttccagtaccacccataatagtaagatgtgattgaaaaactcttaactctgtgaaccccaaagaagctcaaactatcactataacttccactatgaaacattactgtaaatgccatagttctggctagttccatcttctgaactagaaatgtaaaatccttgagattttccaactacgcctgagttgagttcatgaccttctgttaattcgtcgtcgaatactgtcattgtaccgaacatgagtttttggaaatttactcctgatcctaattgagccatgtttagggcagggtatccgttacctccaccgatgatgttgttgttgttaccgttgttttggggtgttacacccttatttatttttaccccgccagtatgcaacataaaattttatatctatataatgtaattgatgaaagctcctcatagaaccacttgatgtttaggataatcatgctagagaatgccttgcatacataacctttaagctttgattgtacaggtttttatatcatatggaaggaaatctaatggagaacttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="43645" stop="44936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43945" g_stop="44636" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E479609" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43945" e_stop="44636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGA---------TGTT---GTTG---T----TGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCT</genome_strand>
        <mrna_strand>CTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATAAGCAAGATAAACAGTAAAATATAACTGAGTCTCCACACCATCTGTTTGTTGATTTGCAGCTGGAGAAGTCTTGACAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATAATAGTAAGATGTGATTGAAAAACTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCTGGCTAGTTCCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACGCCTGAGTTGAGTTCATGACCTTCTGTTAATTCGTCGTCGAATACTGTCATTGTACCGAACATGAGTTTTTGGAAATTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGATGATGTTGTTGTTGTTACCGTTGTTTTGGGGTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGCAACATAAAATTTTATATCTATATAATGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACCTTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E396482" ref_strand="-" ref_description="SGN-E396482 [TUS-16-G13]">
      <seq>cagtacaagttattggttggccactggagttgatggcttttgcttatttagtggtcagtccacctagcatgagcagacagtttgaagagatggctgctgctgcatcaaacaaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcatatcaaagtattccaaattccttcaggcaagtggagaaatggatctcgatgtaacaaacccaaagcaactaaacagaagagtgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatatattgaggagaagattgagggacataaggagtggagaattgagggctctgaatttatttgatggacttaagaaccttttcaaatgacttaaagaatgactcttcctggtttttgaaattgttttccaagaaagtttgccactttctcaatgatcaattttacaacacaagttggagtttcctgaaaatctctgctctcagtgtataatttgctattctaccttccagcttaattagtttcaagattatttgtaatctccaaacttttttgcttactgttatgaccggtttgatgttgccatgtgtctttctttttagcaccaataagtgtatcttttactctcttttttcctgtgtgtttggtacataagaaaaaaatattattctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="44711" stop="47101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45011" g_stop="45099" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45187" g_stop="45318" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="221" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45978" g_stop="46100" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="344" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46101" i_stop="46410" i_length="310">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46411" g_stop="46801" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="735" r_length="391" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="736" polyA_stop="747"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E396482" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396482" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45011" e_stop="45099"/>
          <exon e_start="45187" e_stop="45318"/>
          <exon e_start="45978" e_stop="46100"/>
          <exon e_start="46411" e_stop="46801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAGGTAGTAAATTACTTCTCTCAGTACTACTGTCCTATAATCACACCAACCTGGATACCGGCATCTGCTGTTGCTTCCTTTAGCCATCATGTGGTCCTAGAGAAAAAGAAACAAAAGAGCTCTTAAAGGGATTGAAAATGATTTTGTATAGTTGAGGAGGTTTTTGTTTCTAGTTAGCTTTTGGTGTAGCTAAGGCAATCCTGTTGTATAGAATATGATGTGTCATCTGTAGAGGACCATATTCTTGTGTGTATCCTCAACTTTTTTGTTTATGGCTTGTATACAGGAATGTTTCCACTAATCACTGTGACATGGGTTGTAGAGATGATATAGAGAAGTGTACCTTTTTTGTCTGCATCTACTGCATGTATAAATTTGTTCCCTTGCATATACCTAAGCTAATATACTATCAGACTTTTTTTTAATTACCATGGTGTCTGGGACTACTTTCATACACCTCGACTAATTCCATGGATACCTATCAATTATCACATTTCACCAACAACAGGTATCATAACTTTGTCCACCAAGGCTTACGACAATGGGAAGAAATCACCTAGTACTTTTTTTCTATGCCAGGATATGAACCTGAGACCTCATGGTTCACAATTCACTTCAGCCACACCCTTGGGTGCTTTAACTATCAAATCTTCTTGTGACAGGCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTTATGACCGGTTTGATGTTGCCATGTGTCTTTCTTTTTAGCACCAATAAGTGTATTTTTTACTCTCTTTTTTCCTGTGTGTTTGGTACATAAGAAAAAAATATTATTCTAAAA</genome_strand>
        <mrna_strand>CAGTACAAGTTATTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATTTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT......................................................................................................................................................................................................................................................................................................................ATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTTTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTTATGACCGGTTTGATGTTGCCATGTGTCTTTCTTTTTAGCACCAATAAGTGTATCTTTTACTCTCTTTTTTCCTGTGTGTTTGGTACATAAGAAAAAAATATTATTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E241193" ref_strand="+" ref_description="SGN-E241193 [cLED-26-E5]">
      <seq>ttttgcttatctagtggtcagtccacctagcatgagcagacagtttgaagaggtgcgataaatctcaattttgcaagttaggaaacttgaaatacattcttcaattgggaaagaaagtctgaaaccaagtctattacagatggctgctgctgcatcaaacaaggcaacatcaaagaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcatatcaaagtattccaaattccttcaggcaagtggagaaatggatctcgatgtaacaaacccaaagcaactaaacagaagagtgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagcccatatgtaagtacagactctgtttcacattccaaatatccaataactcttcataacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="44748" stop="46456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45048" g_stop="45318" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45978" g_stop="46156" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="450" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E241193" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45048" e_stop="45318"/>
          <exon e_start="45978" e_stop="46156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAGGTAGTAAATTACTTCTCTCAGTACTACTGTCCTATAATCACACCAACCTGGATACCGGCATCTGCTGTTGCTTCCTTTAGCCATCATGTGGTCCTAGAGAAAAAGAAACAAAAGAGCTCTTAAAGGGATTGAAAATGATTTTGTATAGTTGAGGAGGTTTTTGTTTCTAGTTAGCTTTTGGTGTAGCTAAGGCAATCCTGTTGTATAGAATATGATGTGTCATCTGTAGAGGACCATATTCTTGTGTGTATCCTCAACTTTTTTGTTTATGGCTTGTATACAGGAATGTTTCCACTAATCACTGTGACATGGGTTGTAGAGATGATATAGAGAAGTGTACCTTTTTTGTCTGCATCTACTGCATGTATAAATTTGTTCCCTTGCATATACCTAAGCTAATATACTATCAGACTTTTTTTTAATTACCATGGTGTCTGGGACTACTTTCATACACCTCGACTAATTCCATGGATACCTATCAATTATCACATTTCACCAACAACAGGTATCATAACTTTGTCCACCAAGGCTTACGACAATGGGAAGAAATCACCTAGTACTTTTTTTCTATGCCAGGATATGAACCTGAGACCTCATGGTTCACAATTCACTTCAGCCACACCCTTGGGTGCTTTAACTATCAAATCTTCTTGTGACAGGCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTA</genome_strand>
        <mrna_strand>TTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCCATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTTCATAACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E392431" ref_strand="-" ref_description="SGN-E392431 [TUS-34-C10]">
      <seq>gtggtcagtccacctagcatgagcagacagtttgaagagatggctgctggtgcatcaaacaaggcaacatcaaaggaaagatatcaagtatccagaaatagaagaagatgcattgcaatttattctcgatagttgtgaatctagcatatcaaagtattccaaattccttcaggcaagtggagaaatggatctggatgtaacaaacccaaagcaactaaacagaagagtgtttttgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatttgggtggcgatgggtgaagatgaggtatgttgaagggtaagacgacacactaaacgtgcaatgccgcttatagaacttgttgaatccgagaatactaaggagggattgctagtacagcttgagaaggttataatgtgtttggaaatttattactctcatcgtctcattttatatatcattcatttttataaatagttgattcataatatttgtcattttctagaatcgctgtataaaattatcatattgtttctttttttacccttgtaaattactaaataaatgatccatgttcattggttaaattaattagtcaaaataaatttattcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="44761" stop="47469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45061" g_stop="45099" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87">
            <donor d_prob="0.949" d_score="0.00"/>
            <acceptor a_prob="0.665" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45187" g_stop="45318" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="172" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45978" g_stop="46100" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="295" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46101" i_stop="46836" i_length="736">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46837" g_stop="47166" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="626" r_length="331" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="638"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E392431" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392431" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45061" e_stop="45099"/>
          <exon e_start="45187" e_stop="45318"/>
          <exon e_start="45978" e_stop="46100"/>
          <exon e_start="46837" e_stop="47166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAG-AAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAGGTAGTAAATTACTTCTCTCAGTACTACTGTCCTATAATCACACCAACCTGGATACCGGCATCTGCTGTTGCTTCCTTTAGCCATCATGTGGTCCTAGAGAAAAAGAAACAAAAGAGCTCTTAAAGGGATTGAAAATGATTTTGTATAGTTGAGGAGGTTTTTGTTTCTAGTTAGCTTTTGGTGTAGCTAAGGCAATCCTGTTGTATAGAATATGATGTGTCATCTGTAGAGGACCATATTCTTGTGTGTATCCTCAACTTTTTTGTTTATGGCTTGTATACAGGAATGTTTCCACTAATCACTGTGACATGGGTTGTAGAGATGATATAGAGAAGTGTACCTTTTTTGTCTGCATCTACTGCATGTATAAATTTGTTCCCTTGCATATACCTAAGCTAATATACTATCAGACTTTTTTTTAATTACCATGGTGTCTGGGACTACTTTCATACACCTCGACTAATTCCATGGATACCTATCAATTATCACATTTCACCAACAACAGGTATCATAACTTTGTCCACCAAGGCTTACGACAATGGGAAGAAATCACCTAGTACTTTTTTTCTATGCCAGGATATGAACCTGAGACCTCATGGTTCACAATTCACTTCAGCCACACCCTTGGGTGCTTTAACTATCAAATCTTCTTGTGACAGGCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTTATGACCGGTTTGATGTTGCCATGTGTCTTTCTTTTTAGCACCAATAAGTGTATTTTTTACTCTCTTTTTTCCTGTGTGTTTGGTACATAAGAAAAAAATATTATTCTAAAAGTATGTGTTATAATCTTGACAAATAATATGAGAAGTTGGGTGGCGATGGGTGAAGATGAGGTATGTTGAAGGGTAAGACGACACACTAAACGTGCAATGCCGCTTATAGAACTTGTTGAATCCGAGAATACTAAGGAGGGATTGCTAGTACAGCTTGAGAAGGTTATAATGTGTTTAGAAATTTATTACTCTCATCGTCTCATTTTATATATCATTCATTTTTATAAATAGTTGATTCATAATATTTGTCATTTTCTAGAATCGCTGTATAAAATTATCATATTGTTTC-TTTTTTACCCTTGTAAATTACTAAATAAATGATCCATGTTCATTGGTTAAATTAATTAATCAAAATAAATTTATTC</genome_strand>
        <mrna_strand>GTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG.......................................................................................ATGGCTGCTGGTGCATCAAACAAGGCAACATCAAAGGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGGAGAAATGGATCTGGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTTTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTGGCGATGGGTGAAGATGAGGTATGTTGAAGGGTAAGACGACACACTAAACGTGCAATGCCGCTTATAGAACTTGTTGAATCCGAGAATACTAAGGAGGGATTGCTAGTACAGCTTGAGAAGGTTATAATGTGTTTGGAAATTTATTACTCTCATCGTCTCATTTTATATATCATTCATTTTTATAAATAGTTGATTCATAATATTTGTCATTTTCTAGAATCGCTGTATAAAATTATCATATTGTTTCTTTTTTTACCCTTGTAAATTACTAAATAAATGATCCATGTTCATTGGTTAAATTAATTAGTCAAAATAAATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E410997" ref_strand="+" ref_description="SGN-E410997 [PPI-18-N19]">
      <seq>cttcaggcaagtggagaaatggatctcgatgtaacaaatccaaagcaactaaacagaagattgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatatattgaggagaagattgagggacataaggagtggagaattgaaggctctgaatttatttgatggacttaagaacctttttaaatgactcttcctggattttgaaattgtttccaagaaagtttgccactgtctcaatgatcaatcctacagcacaagttggagtttcctgaactctcttctctcagtgtataatttgctattctaccttccagcttaattagtttcaagattatttgtaatctccaaactttttgcttactgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="45675" stop="46991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45978" g_stop="46100" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="129" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46101" i_stop="46410" i_length="310">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46411" g_stop="46690" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="394" r_length="265" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="404"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E410997" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45978" e_stop="46100"/>
          <exon e_start="46411" e_stop="46690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTT</genome_strand>
        <mrna_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAATCCAAAGCAACTAAACAGAAGATTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT......................................................................................................................................................................................................................................................................................................................ATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAAGGCTCTGAATTTATTTGATGGACTTAAGAACC--TT----T---TT--A-AATGACTCTTCCTGGATTTTGAAATTG-TTTCCAAGAAAGTTTGCCACTGTCTCAATGATCAATCCTACAGCACAAGTTGGAGTTTCCTG-AACTCTCTTCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAAC-TTTTTGCTTACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E435105" ref_strand="+" ref_description="SGN-E435105 [STM-61-A19]">
      <seq>cttcaggcaagtggagaaatggatctcgatgtaacaaatccaaagcaactaaacagaagattgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatatattgaggagaagattgagggacataaggagtggagaattgaaggctctgaatttatttgatggacttaagaacctttttaaatgactcttcctggattttgaaattgtttccaagaaagtttgccactgtctcaatgatcaatcctacagcacaagttggagtttcctgaactctcttctctcagtgtataatttgctattctaccttccagcttaattagtttcaagattatttgtaatctccaaactttttgcttactgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="45675" stop="46991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45978" g_stop="46100" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="129" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46101" i_stop="46410" i_length="310">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46411" g_stop="46690" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="394" r_length="265" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="404"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E435105" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45978" e_stop="46100"/>
          <exon e_start="46411" e_stop="46690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTT</genome_strand>
        <mrna_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAATCCAAAGCAACTAAACAGAAGATTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT......................................................................................................................................................................................................................................................................................................................ATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAAGGCTCTGAATTTATTTGATGGACTTAAGAACC--TT----T---TT--A-AATGACTCTTCCTGGATTTTGAAATTG-TTTCCAAGAAAGTTTGCCACTGTCTCAATGATCAATCCTACAGCACAAGTTGGAGTTTCCTG-AACTCTCTTCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAAC-TTTTTGCTTACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E435106" ref_strand="-" ref_description="SGN-E435106 [STM-61-A19]">
      <seq>cttcaggcaagtggagaaatggatctcgatgtaacaaatccaaagcaactaaacagaagattgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatatattgaggagaagattgagggacataaggagtggagaattgaaggctctgaatttatttgatggacttaagaacctttttaaatgactcttcctggattttgaaattgtttccaagaaagtttgccactgtctcaatgatcaatcctacagcacaagttggagtttcctgaactctcttctctcagtgtataatttgctattctaccttccagcttaattagtttcaagattatttgtatctaaaaactttttgcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="45675" stop="46986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45978" g_stop="46100" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="129" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46101" i_stop="46410" i_length="310">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46411" g_stop="46686" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="389" r_length="260" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E435106" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435106" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45978" e_stop="46100"/>
          <exon e_start="46411" e_stop="46686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTAC</genome_strand>
        <mrna_strand>GCAAGTGGAGAAATGGATCTCGATGTAACAAATCCAAAGCAACTAAACAGAAGATTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT......................................................................................................................................................................................................................................................................................................................ATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAAGGCTCTGAATTTATTTGATGGACTTAAGAACC--TT----T---TT--A-AATGACTCTTCCTGGATTTTGAAATTG-TTTCCAAGAAAGTTTGCCACTGTCTCAATGATCAATCCTACAGCACAAGTTGGAGTTTCCTG-AACTCTCTTCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGT-ATCTAAAAAC-TTTTTGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E392597" ref_strand="-" ref_description="SGN-E392597 [TUS-35-D9]">
      <seq>aacaaacccaaagcaactaaacagaagagtgtttctgaaacagctagcagttgacctgtgtacaagtgagcgaaggatactctatcgtagccaatatttgggtggcgatgggtgaagatgaggtatgttgaagggtaagacgacacactaaacgtgcaatgccgcttatagaacttgttgaatccgagaatactaaggagggattgctagtacagcttgagaaggttataatgtgtttagaaatttattactctcatcgtctcattttatatatcattcatttttataaatagttgattcataatatttgtcattttctagaatcgctgtataaaattatcatattgtttctttttttacccttgtaaattactaaataaatgatccatgttcattggttaaattaattaatcaaaataaatttattcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="45704" stop="47469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46004" g_stop="46100" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46101" i_stop="46836" i_length="736">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46837" g_stop="47166" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="428" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="440"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E392597" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392597" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46004" e_stop="46100"/>
          <exon e_start="46837" e_stop="47166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTAGTTGATTGCACTGTCAGTCTCTGCTTCATTTGCGACAGCTTAATGATCTCATGACGCCATCTTTTAATGAAACATAGTAGGATAGGCATATATTTGTGTTTTGCATAAATACTAACTTGCTGTAATTCAATTTATTGTTTATGCTATCATATAACCTTTATAAACCCAAGAAAGCAGTGAACCAAGGGAGATGAAAGTCTTGCAAAGTGATTAATCAATCTTTTTAATTCTGAGCTTTTGTGACATGATACCAGATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTTATGACCGGTTTGATGTTGCCATGTGTCTTTCTTTTTAGCACCAATAAGTGTATTTTTTACTCTCTTTTTTCCTGTGTGTTTGGTACATAAGAAAAAAATATTATTCTAAAAGTATGTGTTATAATCTTGACAAATAATATGAGAAGTTGGGTGGCGATGGGTGAAGATGAGGTATGTTGAAGGGTAAGACGACACACTAAACGTGCAATGCCGCTTATAGAACTTGTTGAATCCGAGAATACTAAGGAGGGATTGCTAGTACAGCTTGAGAAGGTTATAATGTGTTTAGAAATTTATTACTCTCATCGTCTCATTTTATATATCATTCATTTTTATAAATAGTTGATTCATAATATTTGTCATTTTCTAGAATCGCTGTATAAAATTATCATATTGTTTC-TTTTTTACCCTTGTAAATTACTAAATAAATGATCCATGTTCATTGGTTAAATTAATTAATCAAAATAAATTTATTC</genome_strand>
        <mrna_strand>AACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGTGGCGATGGGTGAAGATGAGGTATGTTGAAGGGTAAGACGACACACTAAACGTGCAATGCCGCTTATAGAACTTGTTGAATCCGAGAATACTAAGGAGGGATTGCTAGTACAGCTTGAGAAGGTTATAATGTGTTTAGAAATTTATTACTCTCATCGTCTCATTTTATATATCATTCATTTTTATAAATAGTTGATTCATAATATTTGTCATTTTCTAGAATCGCTGTATAAAATTATCATATTGTTTCTTTTTTTACCCTTGTAAATTACTAAATAAATGATCCATGTTCATTGGTTAAATTAATTAATCAAAATAAATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E392477" ref_strand="+" ref_description="SGN-E392477 [TUS-36-G14]">
      <seq>tttggaaattacaaataatcttgaaactaattaagctggaaggtagaatagcaaattatacactgagagcaaaaattttcaggaaactccaacttgtgttgtaaaattgatcattgagaaagtggcaaactttcttggaaaacaatttcaaaaaccaggaagagtcattctttaagtcatttgaaaaggttcttaagtccatcaaataaattcaaagccctcaattctccactccttatgtccctcaatcttctcctcaatatatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="46973" stop="46109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46673" g_stop="46408" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E392477" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46673" e_stop="46408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGAGATTACAAATAATCTTGAAACTAATTAAGCTGGAAGGTAGAATAGCAAATTATACACTGAGAGCAGAGATTTTCAGGAAACTCCAACTTGTGTTGTAGAATTGATCATTGAGAAAGTGGCAAACTTTCTTGGAAAACAATTTCAAAAACCAGGAAGAGTCATTCTTTAAGTCATTTGAAAAGGTTCTTAAGTCCATCAAATAAATTCAGAGCCCTCAATTCTCCACTCCTTATGTCCCTCAATCTTCTCCTCAATATCTG</genome_strand>
        <mrna_strand>TTTGGAAATTACAAATAATCTTGAAACTAATTAAGCTGGAAGGTAGAATAGCAAATTATACACTGAGAGCAAAAATTTTCAGGAAACTCCAACTTGTGTTGTAAAATTGATCATTGAGAAAGTGGCAAACTTTCTTGGAAAACAATTTCAAAAACCAGGAAGAGTCATTCTTTAAGTCATTTGAAAAGGTTCTTAAGTCCATCAAATAAATTCAAAGCCCTCAATTCTCCACTCCTTATGTCCCTCAATCTTCTCCTCAATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E323822" ref_strand="+" ref_description="SGN-E323822 [cTOC-5-B5]">
      <seq>gaagcttacggaaacacgccacgtcttcctgcaagcactctcacatgaaaaacgaatttggcagaaccattacttcacaaaatttcaaatactcctttttcatcggagatcggaaaagtttttttttccggcaatggtgaattctcgcaaacggaaaaggtacaatctggagtacagagcgagcgatgatgactcatggtatagtgtacgactcgtaatgaaaggccaaacaatgactgtgaagtatgaggggtatacgcaggaatatgacgaggtttttcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="50742" stop="51627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51042" g_stop="51327" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E323822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51042" e_stop="51327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTACGGAAACACGCCACGTCTTCCTGCAAGCACTCTCACATGAAAAACGAATTTGGCAGAACCATTACTTCACAAAATTTCAAATACTCCTTTTTCATCGGAGATCGGAAAAGTTTTTTTTTCCGGCAATGGTGAATTCTCGCAAACGGAAAAGGTACAATCTGGAGTACAGAGCGAGCGATGATGACTCATGGTATAGTGTACGACTCGTAATGAAAGGCCAAACAATGACTGTGAAGTATGAGGGGTATACGCAGGAATATGACGAGGTTTTTCATGCT</genome_strand>
        <mrna_strand>GAAGCTTACGGAAACACGCCACGTCTTCCTGCAAGCACTCTCACATGAAAAACGAATTTGGCAGAACCATTACTTCACAAAATTTCAAATACTCCTTTTTCATCGGAGATCGGAAAAGTTTTTTTTTCCGGCAATGGTGAATTCTCGCAAACGGAAAAGGTACAATCTGGAGTACAGAGCGAGCGATGATGACTCATGGTATAGTGTACGACTCGTAATGAAAGGCCAAACAATGACTGTGAAGTATGAGGGGTATACGCAGGAATATGACGAGGTTTTTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E337015" ref_strand="+" ref_description="SGN-E337015 [cTOE-20-L7]">
      <seq>ccacgtctttctgcatgcactctcacatgaaaaacgaatttggnagaaccattacttcacaaaatttcaaatactcctttttcatcggagatcggaaaagtttttttttccggcaatggtgaattctcgcaaacggaaaaggtacaatctggagtacagagcgagcgatgatgactcatggtatagtgtacgactcgtaatgaaaggccaaacaatgactgtgaagtatgaggggtatacgcaggaatatgacgagggttttcatgctggagatttcaagtcgaaggaggaggttgatgagctggctaagaggtttaggtctgtgtcacctcagatgcaggacatccaatgtggtagtctcaaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="50760" stop="51727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51060" g_stop="51427" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E337015" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51060" e_stop="51427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACGTCTTCCTGCAAGCACTCTCACATGAAAAACGAATTTGGCAGAACCATTACTTCACAAAATTTCAAATACTCCTTTTTCATCGGAGATCGGAAAAGTTTTTTTTTCCGGCAATGGTGAATTCTCGCAAACGGAAAAGGTACAATCTGGAGTACAGAGCGAGCGATGATGACTCATGGTATAGTGTACGACTCGTAATGAAAGGCCAAACAATGACTGTGAAGTATGAGGGGTATACGCAGGAATATGACGAGGTTTTTCATGCTGGAGATTTCAAGTCGAAGGAGGAGGTTGATGAGCTGGTTAAGAGGTTTAGGTCTGTGTCACCTCAGATGCAGGACAGCGAATGTGGTAGTCTCAAGGAAG</genome_strand>
        <mrna_strand>CCACGTCTTTCTGCATGCACTCTCACATGAAAAACGAATTTGGNAGAACCATTACTTCACAAAATTTCAAATACTCCTTTTTCATCGGAGATCGGAAAAGTTTTTTTTTCCGGCAATGGTGAATTCTCGCAAACGGAAAAGGTACAATCTGGAGTACAGAGCGAGCGATGATGACTCATGGTATAGTGTACGACTCGTAATGAAAGGCCAAACAATGACTGTGAAGTATGAGGGGTATACGCAGGAATATGACGAGGGTTTTCATGCTGGAGATTTCAAGTCGAAGGAGGAGGTTGATGAGCTGGCTAAGAGGTTTAGGTCTGTGTCACCTCAGATGCAGGACATCCAATGTGGTAGTCTCAAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E545279" ref_strand="+" ref_description="SGN-E545279 [TUS-68-A18]">
      <seq>attgcaaagaaaaagagaattattctttgtcagagagaaatggagaggatccaagattcagaagagaaaacaaaatccagttccttctttaagcgcattgtgggaacagttgtacgatccgttcaggatgaccaaaaggaacaagatattagaaacatggaaaacgaggttcaggccttagaggagctatcaaagcagttgttcttggaaatttatgagcttcgccaagctaaggaagctgctgcttattctcgaacatggaagggtcatttgcagaatcttttgggctatgtgtgttctgtctattgtgtgtataaaatgataaagtctcttcagagcgttgttttcaaggaggctggttctgtagatcctgtaacaaggacaatcagcatatttttacagttctttgacataggaattgatgtcaacttattatcacagtacatatctctaatgttcattggggtgttgattgtggtgtctgtaaggggcttcttgactaacttgatgaagttctttttcgcagtttccagagttggaagtggatcatcaagtaatgttgtgctttttctctctgaaatcatgggaatgtacttcctttcctccattcttttgatcagaaaaagtctggcaactgaatatcggataatcatcacggatgtattgggtggagacatacaatttgatttctatcacaggtggtttgatgncatatttgtagccagtgctttcttatcgctgcttttgctctctgcacactatacagctcgaaagggcggataatagcacccaattgattaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="62511" stop="67902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62811" g_stop="62876" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62877" i_stop="63607" i_length="731">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63608" g_stop="63686" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="145" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63687" i_stop="63884" i_length="198">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63885" g_stop="63973" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="234" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63974" i_stop="64875" i_length="902">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64876" g_stop="64968" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="327" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64969" i_stop="65298" i_length="330">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65299" g_stop="65325" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="354" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65451" g_stop="65537" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="441" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66668" g_stop="66739" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="513" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67051" g_stop="67181" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="644" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67444" g_stop="67602" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="803" r_length="159" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E545279" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62811" e_stop="62876"/>
          <exon e_start="63608" e_stop="63686"/>
          <exon e_start="63885" e_stop="63973"/>
          <exon e_start="64876" e_stop="64968"/>
          <exon e_start="65299" e_stop="65325"/>
          <exon e_start="65451" e_stop="65537"/>
          <exon e_start="66668" e_stop="66739"/>
          <exon e_start="67051" e_stop="67181"/>
          <exon e_start="67444" e_stop="67602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAGGTTAATTGGTCAACTTAAGTTTTTTGCTTTTGGATGCTTTCATTATGTGTACACACACCAAAAGGCACGGAAAGAAACACAGATTATTGTTTGTAGGTGGCCTGTACTTTTCTTCTTTTTCATACCAGTGCAAAGTCATTGATGATAGATCAGTTCTAAATGGGCTCTTGGGGTATGTTATTAAGACCCTTTATTATGCCTTTATTTCCCTTATCCTATACTCGTTTGAAGTTATGTGGTTCCTGAAAATTATCTAAAGTTGGGTATAGTACTACTGCATATTCATTAAGTGGTTCAACCCATTTGACCTTGGGAATTGCCATTAATAACATTGAAATCACACTTCGAAATAGTGGGCAGTTAGCTACAGTGGTGGGTGTTGTAAGAGTTTGTAAGTATTTCATGCATGAAGCACTTTCCTGAGTATCTCTTTGATGCCCTTTTCTAGATCAATAGCAAAATTTTGTAAATATATTGATGAAAAATTCTTTAACTTTGCTTTAGAAACCATAACTTAATTTCTTGCTGGAGTTGTATTGCGACTTCCTGTATTTAAAGAAAGGTTTAGCTGATGTTTGCGCGAGTCAATAGCTCAATTTTTGCATCAGCTGCTATTGTCAAGCGATAATAAAAGAATGAAAAGGCAAGGTGTCCTTTTGTGGTTCTGAACATTTGCAGTTACTTTATATATTTTATTTTGAAGTGTGTTCTCTATTATGGTTCTGCTGCAGAAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAGGTTAGTGCATGGTAGAACGTCTCTCGTGGAAAATTTATTGATTCAAGTGCATAGAAGCCTCTGTTTACAAGATTTTTCTTTTCTTTATTTCTCCTACATGTGCTGATTGTAGTTAATTTCTGTACATGATATTTGCATTACTTCTAACAATTCTCTGACACACTTCTCTTTGGTGTTAACTTCACTTCATGCATGAAGATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAGGTTCATATTGAACTTTGTTTTATGTTGCACTATTTTTTACCCGTCCATCTTGCTAATAAATGCCTAGTATGACCAATGTGATTTTTTAAGAGAGTGAAGTCTGAACAAAATTATCATTCTGGTTTAGTAGGAGGCTAAAGCTACAGTTTGGAGTGTGAAAAATTGTAGTAGTTATGCTGTGTATAATAGCATCTATATTTGAAATGATGAGAAGTAGAATCAAGTTACCTTCTCAAAAGGAAAAAAAAAGTAGTATATAAAGTTATATTAAGTATTAATTTGAATTGACCAACAAACAAGTTTATTTTTTTTGATCCATACCAATAAAGACTAATATTAGTTTGAATTGTTGGAAAGAGTGTAGAAACATTCCCTTTAACGAAATAGGTCTGGGCAATTTGTTTTCTTTGGCTGTTGTTTGAGATTTCCTAGTTGAAGGGTTTGGGCTGTCTGCTGTATTTGCTAGTCTCCCACTCAACAAGGTAGTCCCTCTATGTGTGTGTATGTGTGTGTTCAGCTTCCCTGAATTCAAGTCTTTATGTTGCCATTGTATAGTTTTTTCATTGTTTTTACCTTAAGATAGCAGAATAATATTCCTTTATTTTATAGTTTTTCCATTGTTTTCGTTGTCTTGGATTTGCTGCTCTTGAGCCGAGGGTCTTTTGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTACACTCTGCTCTCCCCAGACCCCACTTGTGGGATTTCACTGGGTATGTTGCTGCTGTCTGCAAGCTCGTATAATGTTGTGGTCCATCATCTAGTTCAGCTTGTAGTGTAATTACTTCTTTGAATTTATTTAGTTCAATTGGTTTGAAACTACTTTCTTTGTGTTGAGCTGACTCAATTTGTCAATCACACCAGGAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAGGTATGAAAAAGACCTTAAATTTGGTAAATTTGAGCATCTCTCTCATGGTGTCTACTATTTTCCTCTTCATATGACATGCCAACATCAGTGTTAGCAGGAAAATTGCTTGATGTTTAATATTGATCGACACTGGTGCAGAAACTTTTATGGTCTTTCATGTCTATATCATAATTTATACTTTGACATGGACACTACAAAGTTTGTTCATGTTGAGGATTTACTGCACTGTACATAGGTCTTCTTTTTTGTTACTTCCACCCCTTCCAAGTTCTGCCTTCTAATATAATAGTATTTGAGCCAGATAGCTAATTGGCCATTTAATATTTGCAGTCTCTTCAGAGCGTTGTTTTCAAGGAGGTACGCTTCTATATTAGAATTCCATATGCTTAATGGTTCACTTTTCTTTGCATAATTTATAGCTGAATCCTGCATACCATGCATATATTGGATAAAGTTTGACACAAGCATACTGTTTTTGACAGGCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAGGTTCATCTACTCTCTGCATTATTTCATCTACTCACGGTATTCATGGTTGTTAAAAAGTCCACATTGGTAGAGGGATGAGAAATTGGTCTCCTTATATGGACTTGGACAAACCTCCCGTCATGAGCTAGCTTTTCTGGTTGAGTTAGATCCCGGTGTCATATCTTTACATGGTATCAGAGCCGGCCCATCCCAAGTTGTTGTTCACCGATGTTGGGCCCCCATTTAGAAGTGTTCACACTCCAGTTGAGGTTTGGATGTGCAGGGGAGTGTTAAGAAGTCCACATCGGTAGAGGGATGGGAAATTGGTCTGCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGTGTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTACAATGGTTATGGCGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCTGTAATACATTTTGGTGATGAACGTTCAACAATGAGTTTTGATTGAGAAGCTAGCTGCTAGAACGCTTGCATGAAATTTGGAAGTAATTGGTGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCGGTAATACATTTTGGTGATGAACCTCAGCAATGAGTTTCAATTGAAAAGCTAGAGCCTAGAATACTTGCATGATATTGGAAGTAAGTGGGTAGAAAATGGAAGTGCTTGTAGAAGGTGGTTTGTATTTATATGTAGAAAAACCACTGAAGGAAACTAGATCTACATTGTTGTGTTTGAAAAAGTGAAAGCTGAGAAGCTAATATAACACACTAGCAATTTCCCCCTTTTTGGTGCGATAATGGATAAGTAAGCACATTAAAAGTTTCTAAGAATTAAAACAAAGTATGGAATCTAAAATAGACCTCATCGATAAGAGGATAATGTTTAATATTATGCTGTTGTTATTAACATCAAGTCGAGGTAAATTAATTATTTCACATAACAGAAAACAATGTTAGGTTGTATAGAGGGTGACTGATCTATGAGTGACATTGTAAGCTTCAGGAGCTGATACTGAGGCTATATCTTATTGGTTTGTTGTTTCTGCTAGTATTTCATCTCTCATTTTTTGGACATGAGTTATCTGATCATTTTTCTGTTGTGCAGTACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAGGTAAATTTATGCTTCATGGCCCCATCTTCAAGTTTGATGTATGTCAGAATTTATGGTTTATGTATCTAGGTAACATCTGCTCAACTTGTTGACTGTGTTACAATTTATTCTTTAAGGTAACATAGATATGTGAAATCAATGTAGGTGATAAAGTTTGATGATTAAACTCGCCAAATTTGTTGCCCATGTACCCTCACAGATAGAAGCAAGGAAACTAGTTGACATTCTTTAACTGTTTGAAAGATGAGCATCCAACTTCTTATTTACTCGATTATCCTGCTGCTAACTTGAAGCATTTTGGTACTGTCCAGTTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCGGTATGGCTACAACTAATGAGCTCGCTCTCTTTTCTCAATATTTGTCACTAGATCACTTGCTTTGTAATGTTTTGCTCTGTAAACTATTCACGGGCTATTCCACTTAACGAGTTGTTGGCAAGAAAGGAACTTTTTTATGCTGGAACTTGCCATTTTGCAAACATGGGAAAATGCTATTAAGCTAGCTAGTAACTTGGTTGATTTTGATACATGATCTGATAACGAGAAAAACACTATACTCTAACCTGATTAATGTTGACAGGATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAA-GGCCGATAATAAGCACCCAATTGATTAAAC</genome_strand>
        <mrna_strand>ATTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAG......................................................................................................................................................................................................ATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAG..........................................................................................................................................................................................................................................................................................................................................TCTCTTCAGAGCGTTGTTTTCAAGGAG.............................................................................................................................GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAG.......................................................................................................................................................................................................................................................................................................................TTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCG......................................................................................................................................................................................................................................................................GATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGNCATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGGCGGATAAT-AGCACCCAATTGATTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E311800" ref_strand="+" ref_description="SGN-E311800 [cLEZ-9-H7]">
      <seq>ttgcaaagaaaaagagaattattctttgtcagagagaaatggagaggatccaagattcagaagagaaaacaaaatccagttccttctttaagcgcattgtgggaacagttgtacgatccgttcaggatgaccaaaaggaacaagatattagaaacatggaaaacgaggttcaggccttagaggagctatcaaagcagttgttcttggaaatttatgagcttcgccaagctaaggaagctgctgcttattctcgaacatggaagggtcatttgcagaatcttttgggctatgtgtgttctgtctattgtgtgtataaaatgataaagtctcttcagagcgttgttttcaaggaggctggttctgtagatcctgtaacaaggacaatcagcatatttttacagttctttgacataggaattgatgtcaacttattatcacagtacatatctctaatgttcattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="62512" stop="66991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62812" g_stop="62876" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62877" i_stop="63607" i_length="731">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63608" g_stop="63686" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="144" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63687" i_stop="63884" i_length="198">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63885" g_stop="63973" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="233" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63974" i_stop="64875" i_length="902">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64876" g_stop="64968" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="326" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64969" i_stop="65298" i_length="330">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65299" g_stop="65325" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="353" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65451" g_stop="65537" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="440" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66668" g_stop="66691" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="464" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E311800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62812" e_stop="62876"/>
          <exon e_start="63608" e_stop="63686"/>
          <exon e_start="63885" e_stop="63973"/>
          <exon e_start="64876" e_stop="64968"/>
          <exon e_start="65299" e_stop="65325"/>
          <exon e_start="65451" e_stop="65537"/>
          <exon e_start="66668" e_stop="66691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAGGTTAATTGGTCAACTTAAGTTTTTTGCTTTTGGATGCTTTCATTATGTGTACACACACCAAAAGGCACGGAAAGAAACACAGATTATTGTTTGTAGGTGGCCTGTACTTTTCTTCTTTTTCATACCAGTGCAAAGTCATTGATGATAGATCAGTTCTAAATGGGCTCTTGGGGTATGTTATTAAGACCCTTTATTATGCCTTTATTTCCCTTATCCTATACTCGTTTGAAGTTATGTGGTTCCTGAAAATTATCTAAAGTTGGGTATAGTACTACTGCATATTCATTAAGTGGTTCAACCCATTTGACCTTGGGAATTGCCATTAATAACATTGAAATCACACTTCGAAATAGTGGGCAGTTAGCTACAGTGGTGGGTGTTGTAAGAGTTTGTAAGTATTTCATGCATGAAGCACTTTCCTGAGTATCTCTTTGATGCCCTTTTCTAGATCAATAGCAAAATTTTGTAAATATATTGATGAAAAATTCTTTAACTTTGCTTTAGAAACCATAACTTAATTTCTTGCTGGAGTTGTATTGCGACTTCCTGTATTTAAAGAAAGGTTTAGCTGATGTTTGCGCGAGTCAATAGCTCAATTTTTGCATCAGCTGCTATTGTCAAGCGATAATAAAAGAATGAAAAGGCAAGGTGTCCTTTTGTGGTTCTGAACATTTGCAGTTACTTTATATATTTTATTTTGAAGTGTGTTCTCTATTATGGTTCTGCTGCAGAAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAGGTTAGTGCATGGTAGAACGTCTCTCGTGGAAAATTTATTGATTCAAGTGCATAGAAGCCTCTGTTTACAAGATTTTTCTTTTCTTTATTTCTCCTACATGTGCTGATTGTAGTTAATTTCTGTACATGATATTTGCATTACTTCTAACAATTCTCTGACACACTTCTCTTTGGTGTTAACTTCACTTCATGCATGAAGATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAGGTTCATATTGAACTTTGTTTTATGTTGCACTATTTTTTACCCGTCCATCTTGCTAATAAATGCCTAGTATGACCAATGTGATTTTTTAAGAGAGTGAAGTCTGAACAAAATTATCATTCTGGTTTAGTAGGAGGCTAAAGCTACAGTTTGGAGTGTGAAAAATTGTAGTAGTTATGCTGTGTATAATAGCATCTATATTTGAAATGATGAGAAGTAGAATCAAGTTACCTTCTCAAAAGGAAAAAAAAAGTAGTATATAAAGTTATATTAAGTATTAATTTGAATTGACCAACAAACAAGTTTATTTTTTTTGATCCATACCAATAAAGACTAATATTAGTTTGAATTGTTGGAAAGAGTGTAGAAACATTCCCTTTAACGAAATAGGTCTGGGCAATTTGTTTTCTTTGGCTGTTGTTTGAGATTTCCTAGTTGAAGGGTTTGGGCTGTCTGCTGTATTTGCTAGTCTCCCACTCAACAAGGTAGTCCCTCTATGTGTGTGTATGTGTGTGTTCAGCTTCCCTGAATTCAAGTCTTTATGTTGCCATTGTATAGTTTTTTCATTGTTTTTACCTTAAGATAGCAGAATAATATTCCTTTATTTTATAGTTTTTCCATTGTTTTCGTTGTCTTGGATTTGCTGCTCTTGAGCCGAGGGTCTTTTGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTACACTCTGCTCTCCCCAGACCCCACTTGTGGGATTTCACTGGGTATGTTGCTGCTGTCTGCAAGCTCGTATAATGTTGTGGTCCATCATCTAGTTCAGCTTGTAGTGTAATTACTTCTTTGAATTTATTTAGTTCAATTGGTTTGAAACTACTTTCTTTGTGTTGAGCTGACTCAATTTGTCAATCACACCAGGAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAGGTATGAAAAAGACCTTAAATTTGGTAAATTTGAGCATCTCTCTCATGGTGTCTACTATTTTCCTCTTCATATGACATGCCAACATCAGTGTTAGCAGGAAAATTGCTTGATGTTTAATATTGATCGACACTGGTGCAGAAACTTTTATGGTCTTTCATGTCTATATCATAATTTATACTTTGACATGGACACTACAAAGTTTGTTCATGTTGAGGATTTACTGCACTGTACATAGGTCTTCTTTTTTGTTACTTCCACCCCTTCCAAGTTCTGCCTTCTAATATAATAGTATTTGAGCCAGATAGCTAATTGGCCATTTAATATTTGCAGTCTCTTCAGAGCGTTGTTTTCAAGGAGGTACGCTTCTATATTAGAATTCCATATGCTTAATGGTTCACTTTTCTTTGCATAATTTATAGCTGAATCCTGCATACCATGCATATATTGGATAAAGTTTGACACAAGCATACTGTTTTTGACAGGCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAGGTTCATCTACTCTCTGCATTATTTCATCTACTCACGGTATTCATGGTTGTTAAAAAGTCCACATTGGTAGAGGGATGAGAAATTGGTCTCCTTATATGGACTTGGACAAACCTCCCGTCATGAGCTAGCTTTTCTGGTTGAGTTAGATCCCGGTGTCATATCTTTACATGGTATCAGAGCCGGCCCATCCCAAGTTGTTGTTCACCGATGTTGGGCCCCCATTTAGAAGTGTTCACACTCCAGTTGAGGTTTGGATGTGCAGGGGAGTGTTAAGAAGTCCACATCGGTAGAGGGATGGGAAATTGGTCTGCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGTGTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTACAATGGTTATGGCGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCTGTAATACATTTTGGTGATGAACGTTCAACAATGAGTTTTGATTGAGAAGCTAGCTGCTAGAACGCTTGCATGAAATTTGGAAGTAATTGGTGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCGGTAATACATTTTGGTGATGAACCTCAGCAATGAGTTTCAATTGAAAAGCTAGAGCCTAGAATACTTGCATGATATTGGAAGTAAGTGGGTAGAAAATGGAAGTGCTTGTAGAAGGTGGTTTGTATTTATATGTAGAAAAACCACTGAAGGAAACTAGATCTACATTGTTGTGTTTGAAAAAGTGAAAGCTGAGAAGCTAATATAACACACTAGCAATTTCCCCCTTTTTGGTGCGATAATGGATAAGTAAGCACATTAAAAGTTTCTAAGAATTAAAACAAAGTATGGAATCTAAAATAGACCTCATCGATAAGAGGATAATGTTTAATATTATGCTGTTGTTATTAACATCAAGTCGAGGTAAATTAATTATTTCACATAACAGAAAACAATGTTAGGTTGTATAGAGGGTGACTGATCTATGAGTGACATTGTAAGCTTCAGGAGCTGATACTGAGGCTATATCTTATTGGTTTGTTGTTTCTGCTAGTATTTCATCTCTCATTTTTTGGACATGAGTTATCTGATCATTTTTCTGTTGTGCAGTACATATCTCTAATGTTCATTGGG</genome_strand>
        <mrna_strand>TTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAG......................................................................................................................................................................................................ATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAG..........................................................................................................................................................................................................................................................................................................................................TCTCTTCAGAGCGTTGTTTTCAAGGAG.............................................................................................................................GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATCTCTAATGTTCATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E311801" ref_strand="+" ref_description="SGN-E311801 [cLEZ-9-H9]">
      <seq>ttgcaaagaaaaagagaattattctttgtcagagagaaatggagaggatccaagattcagaagagaaaacaaaatccagttccttctttaagcgcattgtgggaacagttgtacgatccgttcaggatgaccaaaaggaacaagatattagaaacatggaaaacgaggttcaggccttagaggagctatcaaagcagttgttcttggaaatttatgagcttcgccaagctaaggaagctgctgcttattctcgaacatggaagggtcatttgcagaatcttttgggctatgtgtgttctgtctattgtgtgtataaaatgataaagtctcttcagagcgttgttttcaaggaggctggttctgtagatcctgtaacaaggacaatcagcatatttttacagttctttgacataggaattgatgtcaacttattatcacagtacatatctctaatgttcattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="62512" stop="66991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62812" g_stop="62876" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62877" i_stop="63607" i_length="731">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63608" g_stop="63686" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="144" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63687" i_stop="63884" i_length="198">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.808" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63885" g_stop="63973" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="233" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63974" i_stop="64875" i_length="902">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64876" g_stop="64968" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="326" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64969" i_stop="65298" i_length="330">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65299" g_stop="65325" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="353" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65451" g_stop="65537" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="440" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66668" g_stop="66691" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="464" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E311801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62812" e_stop="62876"/>
          <exon e_start="63608" e_stop="63686"/>
          <exon e_start="63885" e_stop="63973"/>
          <exon e_start="64876" e_stop="64968"/>
          <exon e_start="65299" e_stop="65325"/>
          <exon e_start="65451" e_stop="65537"/>
          <exon e_start="66668" e_stop="66691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAGGTTAATTGGTCAACTTAAGTTTTTTGCTTTTGGATGCTTTCATTATGTGTACACACACCAAAAGGCACGGAAAGAAACACAGATTATTGTTTGTAGGTGGCCTGTACTTTTCTTCTTTTTCATACCAGTGCAAAGTCATTGATGATAGATCAGTTCTAAATGGGCTCTTGGGGTATGTTATTAAGACCCTTTATTATGCCTTTATTTCCCTTATCCTATACTCGTTTGAAGTTATGTGGTTCCTGAAAATTATCTAAAGTTGGGTATAGTACTACTGCATATTCATTAAGTGGTTCAACCCATTTGACCTTGGGAATTGCCATTAATAACATTGAAATCACACTTCGAAATAGTGGGCAGTTAGCTACAGTGGTGGGTGTTGTAAGAGTTTGTAAGTATTTCATGCATGAAGCACTTTCCTGAGTATCTCTTTGATGCCCTTTTCTAGATCAATAGCAAAATTTTGTAAATATATTGATGAAAAATTCTTTAACTTTGCTTTAGAAACCATAACTTAATTTCTTGCTGGAGTTGTATTGCGACTTCCTGTATTTAAAGAAAGGTTTAGCTGATGTTTGCGCGAGTCAATAGCTCAATTTTTGCATCAGCTGCTATTGTCAAGCGATAATAAAAGAATGAAAAGGCAAGGTGTCCTTTTGTGGTTCTGAACATTTGCAGTTACTTTATATATTTTATTTTGAAGTGTGTTCTCTATTATGGTTCTGCTGCAGAAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAGGTTAGTGCATGGTAGAACGTCTCTCGTGGAAAATTTATTGATTCAAGTGCATAGAAGCCTCTGTTTACAAGATTTTTCTTTTCTTTATTTCTCCTACATGTGCTGATTGTAGTTAATTTCTGTACATGATATTTGCATTACTTCTAACAATTCTCTGACACACTTCTCTTTGGTGTTAACTTCACTTCATGCATGAAGATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAGGTTCATATTGAACTTTGTTTTATGTTGCACTATTTTTTACCCGTCCATCTTGCTAATAAATGCCTAGTATGACCAATGTGATTTTTTAAGAGAGTGAAGTCTGAACAAAATTATCATTCTGGTTTAGTAGGAGGCTAAAGCTACAGTTTGGAGTGTGAAAAATTGTAGTAGTTATGCTGTGTATAATAGCATCTATATTTGAAATGATGAGAAGTAGAATCAAGTTACCTTCTCAAAAGGAAAAAAAAAGTAGTATATAAAGTTATATTAAGTATTAATTTGAATTGACCAACAAACAAGTTTATTTTTTTTGATCCATACCAATAAAGACTAATATTAGTTTGAATTGTTGGAAAGAGTGTAGAAACATTCCCTTTAACGAAATAGGTCTGGGCAATTTGTTTTCTTTGGCTGTTGTTTGAGATTTCCTAGTTGAAGGGTTTGGGCTGTCTGCTGTATTTGCTAGTCTCCCACTCAACAAGGTAGTCCCTCTATGTGTGTGTATGTGTGTGTTCAGCTTCCCTGAATTCAAGTCTTTATGTTGCCATTGTATAGTTTTTTCATTGTTTTTACCTTAAGATAGCAGAATAATATTCCTTTATTTTATAGTTTTTCCATTGTTTTCGTTGTCTTGGATTTGCTGCTCTTGAGCCGAGGGTCTTTTGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGTTTGCGTACACTCTGCTCTCCCCAGACCCCACTTGTGGGATTTCACTGGGTATGTTGCTGCTGTCTGCAAGCTCGTATAATGTTGTGGTCCATCATCTAGTTCAGCTTGTAGTGTAATTACTTCTTTGAATTTATTTAGTTCAATTGGTTTGAAACTACTTTCTTTGTGTTGAGCTGACTCAATTTGTCAATCACACCAGGAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAGGTATGAAAAAGACCTTAAATTTGGTAAATTTGAGCATCTCTCTCATGGTGTCTACTATTTTCCTCTTCATATGACATGCCAACATCAGTGTTAGCAGGAAAATTGCTTGATGTTTAATATTGATCGACACTGGTGCAGAAACTTTTATGGTCTTTCATGTCTATATCATAATTTATACTTTGACATGGACACTACAAAGTTTGTTCATGTTGAGGATTTACTGCACTGTACATAGGTCTTCTTTTTTGTTACTTCCACCCCTTCCAAGTTCTGCCTTCTAATATAATAGTATTTGAGCCAGATAGCTAATTGGCCATTTAATATTTGCAGTCTCTTCAGAGCGTTGTTTTCAAGGAGGTACGCTTCTATATTAGAATTCCATATGCTTAATGGTTCACTTTTCTTTGCATAATTTATAGCTGAATCCTGCATACCATGCATATATTGGATAAAGTTTGACACAAGCATACTGTTTTTGACAGGCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAGGTTCATCTACTCTCTGCATTATTTCATCTACTCACGGTATTCATGGTTGTTAAAAAGTCCACATTGGTAGAGGGATGAGAAATTGGTCTCCTTATATGGACTTGGACAAACCTCCCGTCATGAGCTAGCTTTTCTGGTTGAGTTAGATCCCGGTGTCATATCTTTACATGGTATCAGAGCCGGCCCATCCCAAGTTGTTGTTCACCGATGTTGGGCCCCCATTTAGAAGTGTTCACACTCCAGTTGAGGTTTGGATGTGCAGGGGAGTGTTAAGAAGTCCACATCGGTAGAGGGATGGGAAATTGGTCTGCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGTGTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTACAATGGTTATGGCGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCTGTAATACATTTTGGTGATGAACGTTCAACAATGAGTTTTGATTGAGAAGCTAGCTGCTAGAACGCTTGCATGAAATTTGGAAGTAATTGGTGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCGGTAATACATTTTGGTGATGAACCTCAGCAATGAGTTTCAATTGAAAAGCTAGAGCCTAGAATACTTGCATGATATTGGAAGTAAGTGGGTAGAAAATGGAAGTGCTTGTAGAAGGTGGTTTGTATTTATATGTAGAAAAACCACTGAAGGAAACTAGATCTACATTGTTGTGTTTGAAAAAGTGAAAGCTGAGAAGCTAATATAACACACTAGCAATTTCCCCCTTTTTGGTGCGATAATGGATAAGTAAGCACATTAAAAGTTTCTAAGAATTAAAACAAAGTATGGAATCTAAAATAGACCTCATCGATAAGAGGATAATGTTTAATATTATGCTGTTGTTATTAACATCAAGTCGAGGTAAATTAATTATTTCACATAACAGAAAACAATGTTAGGTTGTATAGAGGGTGACTGATCTATGAGTGACATTGTAAGCTTCAGGAGCTGATACTGAGGCTATATCTTATTGGTTTGTTGTTTCTGCTAGTATTTCATCTCTCATTTTTTGGACATGAGTTATCTGATCATTTTTCTGTTGTGCAGTACATATCTCTAATGTTCATTGGG</genome_strand>
        <mrna_strand>TTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAG......................................................................................................................................................................................................ATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAG..........................................................................................................................................................................................................................................................................................................................................TCTCTTCAGAGCGTTGTTTTCAAGGAG.............................................................................................................................GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATCTCTAATGTTCATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E597802" ref_strand="+" ref_description="SGN-E597802 [67674]">
      <seq>gttgtttcaaggaggctggttctgtagatcctgtaacaaggacaatcagcatatttttacagttctttgacataggaattgatgtcaacttattatcacagtacatttctctcatgttcattggggtgttgattgtggtgtctgtgaggggattcttgactaacttgatgaagttctttttcgcagtttccagagttggaagcggatcatcaagtaatgttgtgctttttctctctgaaatcatgggaatgtacttcctttcctccattcttttgatcagaaagagtctggcaactgaatatcggataatcatcacggatgtattaggtggagacatacaattcgatttctatcacaggtggtttgatgcaatattcgtagccagtgctttcttatctctgcttttgctctctgcacactatacagctcgaaaggccgataataagcacccaattgattaaancatattcctgagtgaagatgctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="65149" stop="67925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65311" g_stop="65325" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65451" g_stop="65537" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="101" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66668" g_stop="66739" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="173" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.567" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67051" g_stop="67181" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="304" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262">
            <donor d_prob="0.812" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67444" g_stop="67628" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="489" r_length="185" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E597802" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65311" e_stop="65325"/>
          <exon e_start="65451" e_stop="65537"/>
          <exon e_start="66668" e_stop="66739"/>
          <exon e_start="67051" e_stop="67181"/>
          <exon e_start="67444" e_stop="67628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTCAAGGAGGTACGCTTCTATATTAGAATTCCATATGCTTAATGGTTCACTTTTCTTTGCATAATTTATAGCTGAATCCTGCATACCATGCATATATTGGATAAAGTTTGACACAAGCATACTGTTTTTGACAGGCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAGGTTCATCTACTCTCTGCATTATTTCATCTACTCACGGTATTCATGGTTGTTAAAAAGTCCACATTGGTAGAGGGATGAGAAATTGGTCTCCTTATATGGACTTGGACAAACCTCCCGTCATGAGCTAGCTTTTCTGGTTGAGTTAGATCCCGGTGTCATATCTTTACATGGTATCAGAGCCGGCCCATCCCAAGTTGTTGTTCACCGATGTTGGGCCCCCATTTAGAAGTGTTCACACTCCAGTTGAGGTTTGGATGTGCAGGGGAGTGTTAAGAAGTCCACATCGGTAGAGGGATGGGAAATTGGTCTGCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGTGTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTACAATGGTTATGGCGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCTGTAATACATTTTGGTGATGAACGTTCAACAATGAGTTTTGATTGAGAAGCTAGCTGCTAGAACGCTTGCATGAAATTTGGAAGTAATTGGTGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCGGTAATACATTTTGGTGATGAACCTCAGCAATGAGTTTCAATTGAAAAGCTAGAGCCTAGAATACTTGCATGATATTGGAAGTAAGTGGGTAGAAAATGGAAGTGCTTGTAGAAGGTGGTTTGTATTTATATGTAGAAAAACCACTGAAGGAAACTAGATCTACATTGTTGTGTTTGAAAAAGTGAAAGCTGAGAAGCTAATATAACACACTAGCAATTTCCCCCTTTTTGGTGCGATAATGGATAAGTAAGCACATTAAAAGTTTCTAAGAATTAAAACAAAGTATGGAATCTAAAATAGACCTCATCGATAAGAGGATAATGTTTAATATTATGCTGTTGTTATTAACATCAAGTCGAGGTAAATTAATTATTTCACATAACAGAAAACAATGTTAGGTTGTATAGAGGGTGACTGATCTATGAGTGACATTGTAAGCTTCAGGAGCTGATACTGAGGCTATATCTTATTGGTTTGTTGTTTCTGCTAGTATTTCATCTCTCATTTTTTGGACATGAGTTATCTGATCATTTTTCTGTTGTGCAGTACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAGGTAAATTTATGCTTCATGGCCCCATCTTCAAGTTTGATGTATGTCAGAATTTATGGTTTATGTATCTAGGTAACATCTGCTCAACTTGTTGACTGTGTTACAATTTATTCTTTAAGGTAACATAGATATGTGAAATCAATGTAGGTGATAAAGTTTGATGATTAAACTCGCCAAATTTGTTGCCCATGTACCCTCACAGATAGAAGCAAGGAAACTAGTTGACATTCTTTAACTGTTTGAAAGATGAGCATCCAACTTCTTATTTACTCGATTATCCTGCTGCTAACTTGAAGCATTTTGGTACTGTCCAGTTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCGGTATGGCTACAACTAATGAGCTCGCTCTCTTTTCTCAATATTTGTCACTAGATCACTTGCTTTGTAATGTTTTGCTCTGTAAACTATTCACGGGCTATTCCACTTAACGAGTTGTTGGCAAGAAAGGAACTTTTTTATGCTGGAACTTGCCATTTTGCAAACATGGGAAAATGCTATTAAGCTAGCTAGTAACTTGGTTGATTTTGATACATGATCTGATAACGAGAAAAACACTATACTCTAACCTGATTAATGTTGACAGGATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGT</genome_strand>
        <mrna_strand>GTTGT-TTCAAGGAG.............................................................................................................................GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTTCTCTCATGTTCATTGGGGTGTTGATTGTGGTGTCTGTGAGGGGATTCTTGACTAACTTGATGAAG.......................................................................................................................................................................................................................................................................................................................TTCTTTTTCGCAGTTTCCAGAGTTGGAAGCGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAGAGTCTGGCAACTGAATATCG......................................................................................................................................................................................................................................................................GATAATCATCACGGATGTATTAGGTGGAGACATACAATTCGATTTCTATCACAGGTGGTTTGATGCAATATTCGTAGCCAGTGCTTTCTTATCTCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAANCATATTCCTGAGTGAAGATGCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E251834" ref_strand="-" ref_description="SGN-E251834 [cLEG-14-D5]">
      <seq>aatcagcatatttttacagttctttgacataggaattgatgtcaacttattatcacagtacatatctctaatgttcattggggtgttgattgtggtgtctgtaaggggcttcttgactaacttgatgaagttctttttcgcagtttccagagttggaagtggatcatcaagtaatgttgtgctttttctctctgaaatcatgggaatgtacttcctttcctccattcttttgatcagaaaaagtctggcaactgaatatcggataatcatcacggatgtattgggtggagacatacaatttgatttctatcacaggtggtttgatgcaatatttgtagccagtgctttcttatcgctgcttttgctctctgcacactatacagctcgaaaggccgataataagcacccaattgattaaaccatattcatgagtgaagatgctaagttttatgtttgggccagaatcaattacactatattctttgtaatgatgtaccattgatatagtagcaattctgtatgatcaaagccatctggttttcatctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="65180" stop="77600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65480" g_stop="65537" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66668" g_stop="66739" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67051" g_stop="67181" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="261" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67444" g_stop="67730" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="548" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67731" i_stop="68064" i_length="334">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68065" g_stop="68081" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="565" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E251834" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65480" e_stop="65537"/>
          <exon e_start="66668" e_stop="66739"/>
          <exon e_start="67051" e_stop="67181"/>
          <exon e_start="67444" e_stop="67730"/>
          <exon e_start="68065" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAGGTTCATCTACTCTCTGCATTATTTCATCTACTCACGGTATTCATGGTTGTTAAAAAGTCCACATTGGTAGAGGGATGAGAAATTGGTCTCCTTATATGGACTTGGACAAACCTCCCGTCATGAGCTAGCTTTTCTGGTTGAGTTAGATCCCGGTGTCATATCTTTACATGGTATCAGAGCCGGCCCATCCCAAGTTGTTGTTCACCGATGTTGGGCCCCCATTTAGAAGTGTTCACACTCCAGTTGAGGTTTGGATGTGCAGGGGAGTGTTAAGAAGTCCACATCGGTAGAGGGATGGGAAATTGGTCTGCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGTGTTTGGGGTTGAGTTAGGCCCAGGTGCCATATCTTTACAATGGTTATGGCGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCTGTAATACATTTTGGTGATGAACGTTCAACAATGAGTTTTGATTGAGAAGCTAGCTGCTAGAACGCTTGCATGAAATTTGGAAGTAATTGGTGCTTCTTAAATGGTTAGCCTATCATTTGAATGAAGCTATTGCTTCCGGTAATACATTTTGGTGATGAACCTCAGCAATGAGTTTCAATTGAAAAGCTAGAGCCTAGAATACTTGCATGATATTGGAAGTAAGTGGGTAGAAAATGGAAGTGCTTGTAGAAGGTGGTTTGTATTTATATGTAGAAAAACCACTGAAGGAAACTAGATCTACATTGTTGTGTTTGAAAAAGTGAAAGCTGAGAAGCTAATATAACACACTAGCAATTTCCCCCTTTTTGGTGCGATAATGGATAAGTAAGCACATTAAAAGTTTCTAAGAATTAAAACAAAGTATGGAATCTAAAATAGACCTCATCGATAAGAGGATAATGTTTAATATTATGCTGTTGTTATTAACATCAAGTCGAGGTAAATTAATTATTTCACATAACAGAAAACAATGTTAGGTTGTATAGAGGGTGACTGATCTATGAGTGACATTGTAAGCTTCAGGAGCTGATACTGAGGCTATATCTTATTGGTTTGTTGTTTCTGCTAGTATTTCATCTCTCATTTTTTGGACATGAGTTATCTGATCATTTTTCTGTTGTGCAGTACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAGGTAAATTTATGCTTCATGGCCCCATCTTCAAGTTTGATGTATGTCAGAATTTATGGTTTATGTATCTAGGTAACATCTGCTCAACTTGTTGACTGTGTTACAATTTATTCTTTAAGGTAACATAGATATGTGAAATCAATGTAGGTGATAAAGTTTGATGATTAAACTCGCCAAATTTGTTGCCCATGTACCCTCACAGATAGAAGCAAGGAAACTAGTTGACATTCTTTAACTGTTTGAAAGATGAGCATCCAACTTCTTATTTACTCGATTATCCTGCTGCTAACTTGAAGCATTTTGGTACTGTCCAGTTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCGGTATGGCTACAACTAATGAGCTCGCTCTCTTTTCTCAATATTTGTCACTAGATCACTTGCTTTGTAATGTTTTGCTCTGTAAACTATTCACGGGCTATTCCACTTAACGAGTTGTTGGCAAGAAAGGAACTTTTTTATGCTGGAACTTGCCATTTTGCAAACATGGGAAAATGCTATTAAGCTAGCTAGTAACTTGGTTGATTTTGATACATGATCTGATAACGAGAAAAACACTATACTCTAACCTGATTAATGTTGACAGGATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAATTGATGTCTTCGTAAATATGAAGAAGCTTTATTACAAAATTCTAGCAGATTGCACACTGCAGTGTCCATTTGGGATAGCGCTCCCAATAGAATTTTCTCCATACTCGGGGAGACGTTTGGTTAAGAGTGGAGCAATCTTATCATTGCATCGCAATCCACGTTTTGGTGGGCTTTTTCATTAAGTGCCTCAGCTACTCAAATGGATGTTTAGGGACCAAGTCGATAAATAATGTCCCAGCAAATTTATGGATTGCTTCTGTCAAATTTTTTTTAATACAGACATTTTACACATGTAAAAATGCATATATTCAAAAAAAAATTCTTATTAATCAAGCAAATAAAAAAAAAATA</genome_strand>
        <mrna_strand>AATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAG.......................................................................................................................................................................................................................................................................................................................TTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCG......................................................................................................................................................................................................................................................................GATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAA..............................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E545278" ref_strand="-" ref_description="SGN-E545278 [TUS-68-A18]">
      <seq>gcttcttgactaacttgatgaagttctttttcgcagtttccagagttggaagtggatcatcaagtaatgttgtgctttttctctctgaaatcatgggaatgtacttcctttcctccattcttttgatcagaaaaagtctggcaactgaatatcggataatcatcacggatgtattgggtggagacatacaatttgatttctatcacaggtggtttgatgcaatatttgtagccagtgctttcttatcgctgcttttgctctctgcacactatacagctcgaaaggccgataataagcacccaattgattaaaccatattcatgagtgaagatgctacgttttatgtttgggccagaatcaattacactatattctttgtaatgatgtaccattgatatagtagcaattctgtatgatcaaagccatctggttttcatctaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="66417" stop="77607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66717" g_stop="66739" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.567" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67051" g_stop="67181" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="154" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67444" g_stop="67735" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="446" r_length="292" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67736" i_stop="68064" i_length="329">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68065" g_stop="68081" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="463" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E545278" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545278" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66717" e_stop="66739"/>
          <exon e_start="67051" e_stop="67181"/>
          <exon e_start="67444" e_stop="67735"/>
          <exon e_start="68065" e_stop="68081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTGACTAACTTGATGAAGGTAAATTTATGCTTCATGGCCCCATCTTCAAGTTTGATGTATGTCAGAATTTATGGTTTATGTATCTAGGTAACATCTGCTCAACTTGTTGACTGTGTTACAATTTATTCTTTAAGGTAACATAGATATGTGAAATCAATGTAGGTGATAAAGTTTGATGATTAAACTCGCCAAATTTGTTGCCCATGTACCCTCACAGATAGAAGCAAGGAAACTAGTTGACATTCTTTAACTGTTTGAAAGATGAGCATCCAACTTCTTATTTACTCGATTATCCTGCTGCTAACTTGAAGCATTTTGGTACTGTCCAGTTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCGGTATGGCTACAACTAATGAGCTCGCTCTCTTTTCTCAATATTTGTCACTAGATCACTTGCTTTGTAATGTTTTGCTCTGTAAACTATTCACGGGCTATTCCACTTAACGAGTTGTTGGCAAGAAAGGAACTTTTTTATGCTGGAACTTGCCATTTTGCAAACATGGGAAAATGCTATTAAGCTAGCTAGTAACTTGGTTGATTTTGATACATGATCTGATAACGAGAAAAACACTATACTCTAACCTGATTAATGTTGACAGGATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAATTGATGTCTTCGTAAATATGAAGAAGCTTTATTACAAAATTCTAGCAGATTGCACACTGCAGTGTCCATTTGGGATAGCGCTCCCAATAGAATTTTCTCCATACTCGGGGAGACGTTTGGTTAAGAGTGGAGCAATCTTATCATTGCATCGCAATCCACGTTTTGGTGGGCTTTTTCATTAAGTGCCTCAGCTACTCAAATGGATGTTTAGGGACCAAGTCGATAAATAATGTCCCAGCAAATTTATGGATTGCTTCTGTCAAATTTTTTTTAATACAGACATTTTACACATGTAAAAATGCATATATTCAAAAAAAAATTCTTATTAATCAAGCAAATAAAAAAAAAATA</genome_strand>
        <mrna_strand>GCTTCTTGACTAACTTGATGAAG.......................................................................................................................................................................................................................................................................................................................TTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCG......................................................................................................................................................................................................................................................................GATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTACGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAAAAAAA.........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E547391" ref_strand="-" ref_description="SGN-E547391 [TUS-71-D24]">
      <seq>aaaaggagagaatttctctttccttttttttttttatttatacaccaaaaaagattcacaaaaaatcaagaaaagggtcataaacaattttgtttttcgaaagatttttctctctgtttctgtctaaaagaattcatggcggaaaaaggccagccgcttcctaagttcggcgagtgggatgtcaatgacccatcgtcagctgaaggattcacagtgatctttaataaagctcgaaatgagaagaagacaggtggcaaggtagactcaccaccaaagggtgactctgcatacaaaaataaagcaacgcttggaaaacctcaatcaaaaaaatggttctgctgtatgcagtctactgctgctgaatcatgaacttctcttagcttctacaacctgaactgggaaatgatgttagtttggaaccagacgcgacaagtgtactagaacactggagctgtagtcaagatgtgacaagtaattttgctgttgtatttcggattatttactcataaaatgctggcttttgctaccaaaagatatttatgatatatatttgtttattttttttctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="77619" stop="73183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77319" g_stop="77175" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77174" i_stop="75138" i_length="2037">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75137" g_stop="74955" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="324" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74954" i_stop="73727" i_length="1228">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73726" g_stop="73483" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="565" r_length="241" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="588"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E547391" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547391" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77319" e_stop="77175"/>
          <exon e_start="75137" e_stop="74955"/>
          <exon e_start="73726" e_stop="73483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTTTTTTATTTATACACCAAAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGGTTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCGGTAAGATTCTTATTTTGTTTCTCTCTTTTAAATAATCTTCTTTGGTTTGTTTTGTTTTAGAGAAAAATACCCTTTTTTAAAGACTCAATTTTGAGCTTGTTTTTTGTTCCCCTGCAAAAAAGAAAAGGTTGGGGTGATGGGATAGATAAAAGGAAAAAATAAATATAGTAGTTCTTGATTATTTTGATTTTGGTTGATTTTTTCTTTTTTTTGGTATAATTTTCTTAAGGATTTCTATGTATTTTATGTCTGTTATATATGTTGATGAAAGAAAGTAGTCATTTCCAAGGTGATTTTTTTGTTTGTGGGGTGTGGGGTGATAGGTTTATTCCTTGGAACCTCATGTGAAAAGATCAATTTTTTTTGTTCTGAAAGTTAAATTCTTGAAACCAATAATGGAGTAGAAATTCAAATGGTATTATCTTAGGGATTAGAGGTGTACCCTTATTTGTTTTGGGGTTTAGTATATAGACAGTTAAAGAAAACCCCTTCTGTTATTGTGTGTGTATTAAAGTTTTGTTTTCTAAAAGTTAATTCTTGAAAACTAATAATGGAGTGGAAGCAAAGGGTACTATCTTATGGATTATAGGTGTTATTTTTTTTTGTCTGTGTGTTTTTGGGGGTCTTGAAGCCTCTTGTCCTTTATATTTGGTTTTTTAAAAGTTAAATGCTTGAAACTGATAATAGACTGGAAACTCAAATGGTATGGTCTTAGGGATGAGATGTGTACATGTTCAGCCTTACTGTTATCTTCCTATTTGGTTGTTATAGTTTCCTAGCAATCCTTCTTTCATTATATTCCTTTTGAGTCTAGGGTCTCTTGAAAACAACCTCTCTACCCAGCAAAGGTAGGGTGCGGTCTTTGTACATCTTATTCTCCACAGACTTCACTTGTGGGGTTACATTGGGTATGTTGTTGTTGTTCGAAAAATTTGGAGCGACATATTCTAGCATGTACCCAATGTACATGAGTGGTCTTGGAGTACATGAGTGGCCTGAGAGATTCTTTCTTTTGAACGCATTGTAGAAAGTAGAAATTAAGAGCATTGGAGGGAATGCACATTTATGTGGACTTTTAGGAGTTCACAGAAGTTGCATCAGATAATGATTTTGCACTTGCAAATCAAATTATAAAAGAGCATAGATGTTTTGGACTTCTCAAGTGCCATTTCTTTTGTCACATTCAGTGAGACTTTTCAATGATTTGTTCACACACATTATCCTTTTCATAATATTTGTATTTATTATTAACATTGCAATTCTCTCTGTTTTTAGTAGAAGTGTGATTTTTGAGTTCTTAGTTTTTTTAAGTATAGAGTATAAAACAATATGCTACTACTTTTTGCATTAATTCGCATGTGAATGGTAGCTTTCACCTGTTTGCTTCTACGAATTTACTTTATCATTTTGATATAAGCTTATTCCTACAGTAATTACTTTAGCAAGCTGAGGTGCCATCTGCTGTCAAAACTGATTTTGGTCCATTCCTAGTTTTCCTCACCTAAATGCATTTGTCTATATTGAATAGTTAACAAAACCCATGAGAAAATTATGTAGCACACCCAATTCTTTTGTAATGGTAGACCCAGGTGTACTGAAACTCATGTTCTGGTTCAGATTCCTAGTTCTTTTTTTTGGGGGTGGGGGAATTGGAAGATTTGTGTTAAACAGATCTTTGTGTGCCCTTCTGTATCTCCTTTCCGGTGGTCTTTTGTGCACTTGAGCACCTTATGTTCTTGCATCTTTTTACTACTCGACTTACTTTGTAATACTGAAGCATTTTTAGTACAAGCAATATCTTAAATGTTCCCTTTTAACAGTAAAATACCATTTCATGATCCTAAACTAATGTGTTTTTCCATTTTCCAATGTTTAATATGCATTTGTTTCTTTCCTGCACAAGTGTGATGATTTGCAGCCTTCTAAATTTGCCTTACAGTTGAATATCTCAAACAATCAGAATCTAGCCCACTGAATTTATTTTTGTGGGAGGGAGTTTTTTCTGCAATATGTGATAGTTATTTTTAATCTCTGCAGGAAAAAGGCCAGCCTCTTCCTAAGTTCGGCGAATGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCAGTAAGTCGTGGCCCATATAATGGCTGTTAGTTCTTTTACTACTTGTATTATGCAGATTGTCATTTCTGTCTTAGATTTGATAGTTTGAGGAAAAAGGTACATGAAGCTCGTAAATGTACTAATTTATATTGTTCTAAAATGTTGTTTGAACTGATGTTCTAACCTCATCTCCCATAAGTAACTTCTAGAATCAAGAACATCTGTAGTGAAGCATCTAATATCATTTCCCAAAACAATAATAGATACTCCATCTCTCGTAATTTATAGGACAATGATCTGCTTTCCTTGGAGCCCCACCTTGTGGTCAGGGGGTTCGGAAACCCATGCAGCAGAAAATTATACTATTAACACCGGGTTAAAGTAATTTTGATGTATGTATAGTAGATATCGACCCCCCTTCAACTAGTTCGTGTGTCTACTTCTTCAGATTCCTAAGGAATGACTTCTTTCTATAAGTGGAAACTATTCAACTTTAACCCCTTCTCTCAATGAGATGATTTATAGTCACACAAGTATCTATTGCTTGTTTAGACCACATGTTTCAAAAGTTAATCCTTCTTTCTTAAATTTTGTGCCCAGTCAAACAGTTCTATGTGGCGGAGTGAGAAACATTTCGTCATAATATTTCATGTACTGTTTACAAGGATATTTCATATACTCTTGCACCCAATGGTGTGTCTTGGTGGTGAATGAAGTAGGTTGAGAACCATGAGGTTTCGGGTTCACAAATCCTAACCTGACACAAAAAGATACTAGGTGATTTCTTCGCATGTGTCCTAGCCTTGGTGGACAAAGTTACTTCGTACCCGTTATTGGTGGGAGGTGGTAGATATGCTGTGCAATTAGTTGAGGTATGGGCAAGCTGGCCCGGATTCTTGTTGGAAGTTACTACTAACCAACTGTAAACTATCTTCTGTCTTTTTACTACAACCTGAATCCTAATGTTATGCATATATCATCTTAGTTCTCTATCTATGATCAATGCATATGCTCAGTTTTACAAATTACAAGTAAATAACATATAAGTTGAGGACTTATTGAGGAATTTCTCATTAGTGAGTAAACAAGATCCTATTCCCATTGTACTTGTGGGTGAACCCAAAGGATCCCACATAATGCCCAAGAACAAAGAAAATATGTTGTTTCGTCGTCTGTTTTTCTGTACTATTACGTCTTTATTTATTCCTAACTTCCAGACTATGACTTTTCTGGTTGCACTGCGTTTCAGAAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAATTTTTGCTGTTGTATTTTGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATGATATATATATTTGTTTATTTTTTTT</genome_strand>
        <mrna_strand>AAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTT---TATTTATACACC-AAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGATTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGCCAGCCGCTTCCTAAGTTCGGCGAGTGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAA-TTTTGCTGTTGTATTTCGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATG--ATATATATTTGTTTATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E547392" ref_strand="+" ref_description="SGN-E547392 [TUS-71-D24]">
      <seq>aaaaggagagaatttctctttccttttttttttttatttatacaccaaaaaagattcacaaaaaatcaagaaaagggtcataaacaattttgtttttcgaaagatttttctctctgtttctgtctaaaagaattcatggcggaaaaaggccagccgcttcctaagttcggcgagtgggatgtcaatgacccatcgtcagctgaaggattcacagtgatctttaataaagctcgaaatgagaagaagacaggtggcaaggtagactcaccaccaaagggtgactctgcatacaaaaataaagcaacgcttggaaaacctcaatcaaaaaaatggttctgctgtatgcagtctactgctgctgaatcatgaacttctcttagcttctacaacctgaactgggaaatgatgttagtttggaaccagacgcgacaagtgtactagaacactggagctgtagtcaagatgtgacaagtaattttgctgttgtatttcggattatttactcataaaatgctggcttttgctaccaaaagatatttatgatatatatttgtttattttttttcttaaaaaagannananaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="77619" stop="73183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77319" g_stop="77175" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77174" i_stop="75138" i_length="2037">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75137" g_stop="74955" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="324" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74954" i_stop="73727" i_length="1228">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73726" g_stop="73483" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="565" r_length="241" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E547392" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77319" e_stop="77175"/>
          <exon e_start="75137" e_stop="74955"/>
          <exon e_start="73726" e_stop="73483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTTTTTTATTTATACACCAAAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGGTTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCGGTAAGATTCTTATTTTGTTTCTCTCTTTTAAATAATCTTCTTTGGTTTGTTTTGTTTTAGAGAAAAATACCCTTTTTTAAAGACTCAATTTTGAGCTTGTTTTTTGTTCCCCTGCAAAAAAGAAAAGGTTGGGGTGATGGGATAGATAAAAGGAAAAAATAAATATAGTAGTTCTTGATTATTTTGATTTTGGTTGATTTTTTCTTTTTTTTGGTATAATTTTCTTAAGGATTTCTATGTATTTTATGTCTGTTATATATGTTGATGAAAGAAAGTAGTCATTTCCAAGGTGATTTTTTTGTTTGTGGGGTGTGGGGTGATAGGTTTATTCCTTGGAACCTCATGTGAAAAGATCAATTTTTTTTGTTCTGAAAGTTAAATTCTTGAAACCAATAATGGAGTAGAAATTCAAATGGTATTATCTTAGGGATTAGAGGTGTACCCTTATTTGTTTTGGGGTTTAGTATATAGACAGTTAAAGAAAACCCCTTCTGTTATTGTGTGTGTATTAAAGTTTTGTTTTCTAAAAGTTAATTCTTGAAAACTAATAATGGAGTGGAAGCAAAGGGTACTATCTTATGGATTATAGGTGTTATTTTTTTTTGTCTGTGTGTTTTTGGGGGTCTTGAAGCCTCTTGTCCTTTATATTTGGTTTTTTAAAAGTTAAATGCTTGAAACTGATAATAGACTGGAAACTCAAATGGTATGGTCTTAGGGATGAGATGTGTACATGTTCAGCCTTACTGTTATCTTCCTATTTGGTTGTTATAGTTTCCTAGCAATCCTTCTTTCATTATATTCCTTTTGAGTCTAGGGTCTCTTGAAAACAACCTCTCTACCCAGCAAAGGTAGGGTGCGGTCTTTGTACATCTTATTCTCCACAGACTTCACTTGTGGGGTTACATTGGGTATGTTGTTGTTGTTCGAAAAATTTGGAGCGACATATTCTAGCATGTACCCAATGTACATGAGTGGTCTTGGAGTACATGAGTGGCCTGAGAGATTCTTTCTTTTGAACGCATTGTAGAAAGTAGAAATTAAGAGCATTGGAGGGAATGCACATTTATGTGGACTTTTAGGAGTTCACAGAAGTTGCATCAGATAATGATTTTGCACTTGCAAATCAAATTATAAAAGAGCATAGATGTTTTGGACTTCTCAAGTGCCATTTCTTTTGTCACATTCAGTGAGACTTTTCAATGATTTGTTCACACACATTATCCTTTTCATAATATTTGTATTTATTATTAACATTGCAATTCTCTCTGTTTTTAGTAGAAGTGTGATTTTTGAGTTCTTAGTTTTTTTAAGTATAGAGTATAAAACAATATGCTACTACTTTTTGCATTAATTCGCATGTGAATGGTAGCTTTCACCTGTTTGCTTCTACGAATTTACTTTATCATTTTGATATAAGCTTATTCCTACAGTAATTACTTTAGCAAGCTGAGGTGCCATCTGCTGTCAAAACTGATTTTGGTCCATTCCTAGTTTTCCTCACCTAAATGCATTTGTCTATATTGAATAGTTAACAAAACCCATGAGAAAATTATGTAGCACACCCAATTCTTTTGTAATGGTAGACCCAGGTGTACTGAAACTCATGTTCTGGTTCAGATTCCTAGTTCTTTTTTTTGGGGGTGGGGGAATTGGAAGATTTGTGTTAAACAGATCTTTGTGTGCCCTTCTGTATCTCCTTTCCGGTGGTCTTTTGTGCACTTGAGCACCTTATGTTCTTGCATCTTTTTACTACTCGACTTACTTTGTAATACTGAAGCATTTTTAGTACAAGCAATATCTTAAATGTTCCCTTTTAACAGTAAAATACCATTTCATGATCCTAAACTAATGTGTTTTTCCATTTTCCAATGTTTAATATGCATTTGTTTCTTTCCTGCACAAGTGTGATGATTTGCAGCCTTCTAAATTTGCCTTACAGTTGAATATCTCAAACAATCAGAATCTAGCCCACTGAATTTATTTTTGTGGGAGGGAGTTTTTTCTGCAATATGTGATAGTTATTTTTAATCTCTGCAGGAAAAAGGCCAGCCTCTTCCTAAGTTCGGCGAATGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCAGTAAGTCGTGGCCCATATAATGGCTGTTAGTTCTTTTACTACTTGTATTATGCAGATTGTCATTTCTGTCTTAGATTTGATAGTTTGAGGAAAAAGGTACATGAAGCTCGTAAATGTACTAATTTATATTGTTCTAAAATGTTGTTTGAACTGATGTTCTAACCTCATCTCCCATAAGTAACTTCTAGAATCAAGAACATCTGTAGTGAAGCATCTAATATCATTTCCCAAAACAATAATAGATACTCCATCTCTCGTAATTTATAGGACAATGATCTGCTTTCCTTGGAGCCCCACCTTGTGGTCAGGGGGTTCGGAAACCCATGCAGCAGAAAATTATACTATTAACACCGGGTTAAAGTAATTTTGATGTATGTATAGTAGATATCGACCCCCCTTCAACTAGTTCGTGTGTCTACTTCTTCAGATTCCTAAGGAATGACTTCTTTCTATAAGTGGAAACTATTCAACTTTAACCCCTTCTCTCAATGAGATGATTTATAGTCACACAAGTATCTATTGCTTGTTTAGACCACATGTTTCAAAAGTTAATCCTTCTTTCTTAAATTTTGTGCCCAGTCAAACAGTTCTATGTGGCGGAGTGAGAAACATTTCGTCATAATATTTCATGTACTGTTTACAAGGATATTTCATATACTCTTGCACCCAATGGTGTGTCTTGGTGGTGAATGAAGTAGGTTGAGAACCATGAGGTTTCGGGTTCACAAATCCTAACCTGACACAAAAAGATACTAGGTGATTTCTTCGCATGTGTCCTAGCCTTGGTGGACAAAGTTACTTCGTACCCGTTATTGGTGGGAGGTGGTAGATATGCTGTGCAATTAGTTGAGGTATGGGCAAGCTGGCCCGGATTCTTGTTGGAAGTTACTACTAACCAACTGTAAACTATCTTCTGTCTTTTTACTACAACCTGAATCCTAATGTTATGCATATATCATCTTAGTTCTCTATCTATGATCAATGCATATGCTCAGTTTTACAAATTACAAGTAAATAACATATAAGTTGAGGACTTATTGAGGAATTTCTCATTAGTGAGTAAACAAGATCCTATTCCCATTGTACTTGTGGGTGAACCCAAAGGATCCCACATAATGCCCAAGAACAAAGAAAATATGTTGTTTCGTCGTCTGTTTTTCTGTACTATTACGTCTTTATTTATTCCTAACTTCCAGACTATGACTTTTCTGGTTGCACTGCGTTTCAGAAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAATTTTTGCTGTTGTATTTTGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATGATATATATATTTGTTTATTTTTTTT</genome_strand>
        <mrna_strand>AAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTT---TATTTATACACC-AAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGATTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGCCAGCCGCTTCCTAAGTTCGGCGAGTGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAA-TTTTGCTGTTGTATTTCGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATG--ATATATATTTGTTTATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E596289" ref_strand="+" ref_description="SGN-E596289 [39580]">
      <seq>tcgaaatgagaagaagacaggtggcaaggtagactcaccaccaaagggtgactctgcatacaaaaataaagcaatgcttggaaaacctcaatcaaaaaaatggttctgctgtatgcagtctactgctgctgaatcatgaacttctcttagcttctacatgctgcactgggagatgatgttagtttggaaccagacgcgacaagtgtactagaacactggagctgtagtcaagatgtgacaagtaattttgctgttgtatttcggaatatttactcataaaatgctggcttttgccaccaaaagatatttatgatatatatttgtttattttttttctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="75348" stop="73183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75048" g_stop="74955" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74954" i_stop="73727" i_length="1228">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.582" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73726" g_stop="73483" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="335" r_length="241" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="360"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E596289" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75048" e_stop="74955"/>
          <exon e_start="73726" e_stop="73483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCAGTAAGTCGTGGCCCATATAATGGCTGTTAGTTCTTTTACTACTTGTATTATGCAGATTGTCATTTCTGTCTTAGATTTGATAGTTTGAGGAAAAAGGTACATGAAGCTCGTAAATGTACTAATTTATATTGTTCTAAAATGTTGTTTGAACTGATGTTCTAACCTCATCTCCCATAAGTAACTTCTAGAATCAAGAACATCTGTAGTGAAGCATCTAATATCATTTCCCAAAACAATAATAGATACTCCATCTCTCGTAATTTATAGGACAATGATCTGCTTTCCTTGGAGCCCCACCTTGTGGTCAGGGGGTTCGGAAACCCATGCAGCAGAAAATTATACTATTAACACCGGGTTAAAGTAATTTTGATGTATGTATAGTAGATATCGACCCCCCTTCAACTAGTTCGTGTGTCTACTTCTTCAGATTCCTAAGGAATGACTTCTTTCTATAAGTGGAAACTATTCAACTTTAACCCCTTCTCTCAATGAGATGATTTATAGTCACACAAGTATCTATTGCTTGTTTAGACCACATGTTTCAAAAGTTAATCCTTCTTTCTTAAATTTTGTGCCCAGTCAAACAGTTCTATGTGGCGGAGTGAGAAACATTTCGTCATAATATTTCATGTACTGTTTACAAGGATATTTCATATACTCTTGCACCCAATGGTGTGTCTTGGTGGTGAATGAAGTAGGTTGAGAACCATGAGGTTTCGGGTTCACAAATCCTAACCTGACACAAAAAGATACTAGGTGATTTCTTCGCATGTGTCCTAGCCTTGGTGGACAAAGTTACTTCGTACCCGTTATTGGTGGGAGGTGGTAGATATGCTGTGCAATTAGTTGAGGTATGGGCAAGCTGGCCCGGATTCTTGTTGGAAGTTACTACTAACCAACTGTAAACTATCTTCTGTCTTTTTACTACAACCTGAATCCTAATGTTATGCATATATCATCTTAGTTCTCTATCTATGATCAATGCATATGCTCAGTTTTACAAATTACAAGTAAATAACATATAAGTTGAGGACTTATTGAGGAATTTCTCATTAGTGAGTAAACAAGATCCTATTCCCATTGTACTTGTGGGTGAACCCAAAGGATCCCACATAATGCCCAAGAACAAAGAAAATATGTTGTTTCGTCGTCTGTTTTTCTGTACTATTACGTCTTTATTTATTCCTAACTTCCAGACTATGACTTTTCTGGTTGCACTGCGTTTCAGAAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAATTTTTGCTGTTGTATTTTGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATGATATATATATTTGTTTATTTTTTTT</genome_strand>
        <mrna_strand>TCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAATGCTTGGAAAACCTCAATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACATGCTGCACTGGGAGATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAA-TTTTGCTGTTGTATTTCGGAATATTTACTCATAAAATGCTGGCTTTTGCCACCAAAAGATATTTATG--ATATATATTTGTTTATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E476279" ref_strand="+" ref_description="SGN-E476279 [cSTB-43-N4]">
      <seq>gacagttaaagaaaaccccttttgttattgtgtgtgtattaaatttttgttttcttaaaagttaattcttgaaactaataatagagtggaagccaaatggtactatcttagggattagaggtgttttttgtgtgtgtgtgtgtgttttggggggtcttgaaacctcttgtcctttatatttggttttctaaaagttaaatgcttgaaactgataatagactagaaactcaaatggtatgatcttagggattagaggtgtacatgttcagcattaatgttatcttcctatttggttgttatagtttcctagcaatccttctttgataatattccttttgagtctagggtctattggaaacaacctctctaccccacaaaggtagggtgcggtctctgtacatcttattctccacagacctcacttgtggtaatacattgagtttctagtttttgtttgtttgtttagagtataaaacaatatgctattacattttgcatttattcacatgtgaatggtaactttcacctgtttgcttctatgaatttatttatatcgttttgatataagcctattcctgcagtaattacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="77004" stop="75435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76704" g_stop="76257" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76256" i_stop="75878" i_length="379">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75877" g_stop="75735" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="591" r_length="142" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E476279" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76704" e_stop="76257"/>
          <exon e_start="75877" e_stop="75735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGTTAAAGAAAACCCCTTCTGTTATTGTGTGTGTATTAAAGTTTTGTTTTC-TAAAAGTTAATTCTTGAAAACTAATAATGGAGTGGAAG-CAAAGGGTACTATCTTATGGATTATAGGTGTTATTTTTTTTTGTCTGTGTGTTTTTGGGGGTCTTGAAGCCTCTTGTCCTTTATATTTGGTTTTTTAAAAGTTAAATGCTTGAAACTGATAATAGACTGGAAACTCAAATGGTATGGTCTTAGGGATGAGATGTGTACATGTTCAGCCTTACTGTTATCTTCCTATTTGGTTGTTATAGTTTCCTAGCAATCCTTCTTTCATTATATTCCTTTTGAGTCTAGGGTCTCTTGAAAACAACCTCTCTACCCAGCAAAGGTAGGGTGCGGTCTTTGTACATCTTATTCTCCACAGACTTCACTTGTGGGGTTACATTGGGTATGTTGTTGTTGTTCGAAAAATTTGGAGCGACATATTCTAGCATGTACCCAATGTACATGAGTGGTCTTGGAGTACATGAGTGGCCTGAGAGATTCTTTCTTTTGAACGCATTGTAGAAAGTAGAAATTAAGAGCATTGGAGGGAATGCACATTTATGTGGACTTTTAGGAGTTCACAGAAGTTGCATCAGATAATGATTTTGCACTTGCAAATCAAATTATAAAAGAGCATAGATGTTTTGGACTTCTCAAGTGCCATTTCTTTTGTCACATTCAGTGAGACTTTTCAATGATTTGTTCACACACATTATCCTTTTCATAATATTTGTATTTATTATTAACATTGCAATTCTCTCTGTTTTTAGTAGAAGTGTGATTTTTGAGTTCTTAGTTTTTTTAAGTATAGAGTATAAAACAATATGCTACTACTTTTTGCATTAATTCGCATGTGAATGGTAGCTTTCACCTGTTTGCTTCTACGAATTTACTT-TATCATTTTGATATAAGCTTATTCCTACAGTAATTACTTT</genome_strand>
        <mrna_strand>GACAGTTAAAGAAAACCCCTTTTGTTATTGTGTGTGTATTAAATTTTTGTTTTCTTAAAAGTTAATTCTTG-AAACTAATAATAGAGTGGAAGCCAAATGGTACTATCTTAGGGATTAGAGGTGTTTTTTGTGTGTGTGTGTGTGTTTTGGGGGGTCTTGAAACCTCTTGTCCTTTATATTTGGTTTTCTAAAAGTTAAATGCTTGAAACTGATAATAGACTAGAAACTCAAATGGTATGATCTTAGGGATTAGAGGTGTACATGTTCAGCATTAATGTTATCTTCCTATTTGGTTGTTATAGTTTCCTAGCAATCCTTCTTTGATAATATTCCTTTTGAGTCTAGGGTCTATTGGAAACAACCTCTCTACCCCACAAAGGTAGGGTGCGGTCTCTGTACATCTTATTCTCCACAGACCTCACTTGTGGTAATACATTGAGTTTCTAGTT...........................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGTTT--GTTTAGAGTATAAAACAATATGCTATTACATTTTGCATTTATTCACATGTGAATGGTAACTTTCACCTGTTTGCTTCTATGAATTTATTTATATCGTTTTGATATAAGCCTATTCCTGCAGTAATTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328441" ref_strand="-" ref_description="SGN-E328441 [cTOC-21-D8]">
      <seq>atgattatgcagttcaaagtttcgaacgtggaatcgctgctcaggaagcaggtgctttcgcatgggagattgtaccggttgaggtgcctggaggaagagaaggctataaaactaggattaaatgttattggaaagatctcaggctacgcggatgctgctcaggaacctgaattattcacaactgcacctgctctagcaattcccaaagctatcaaaagtgctagcttagaggcttctcaaattgattactatgaaataaatgaagcctttgctgtggtatctcttgcaaatcaaaagctgcttggtcttaatccagaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattagttacacttctcggggtgttgagacagaaaaatggcaaatatggagctgctggtgtttgcaatggaggaggaggtgcctccgcccttgtcctagagcttgtgtaatcctttttttttgtttttggttagtgtttcagactatttatgatagacagtgcttgcaacggattagatctagcagggcgtcttcaaccagagagatgactctgtaacttctacttcttcgttttctttttcttctttcctttgtaatgttaatttaagacgctttttattcttcaaaaataaatgaaaggttcttcccgaaaaaaaaaaaaaaaaaaaccgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="83252" stop="77160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82952" g_stop="82876" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82767" g_stop="82748" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="97" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82747" i_stop="81726" i_length="1022">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81725" g_stop="81661" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81514" g_stop="81404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="273" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81324" g_stop="81283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="315" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81036" g_stop="80950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80802" g_stop="80694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="511" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80371" g_stop="80189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="694" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="80188" i_stop="77334" i_length="2855">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.844" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="77333" g_stop="77303" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="725" r_length="31" r_score="0.677"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E328441" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328441" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82952" e_stop="82876"/>
          <exon e_start="82767" e_stop="82748"/>
          <exon e_start="81725" e_stop="81661"/>
          <exon e_start="81514" e_stop="81404"/>
          <exon e_start="81324" e_stop="81283"/>
          <exon e_start="81036" e_stop="80950"/>
          <exon e_start="80802" e_stop="80694"/>
          <exon e_start="80371" e_stop="80189"/>
          <exon e_start="77333" e_stop="77303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCGGTAAAAGTTATTAGCACTTGGTCTCTAGATATTTCTTCATACTCAAATAAAGCAACTTCTTTGCAGTTCGTTTATTTTATGGTTCTAATGAATTCTGACAATGTTCAGGTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGACGGTCTAGGAAAGGTGAGTACATTAATATGACATTTTATTAGTCAAAGAAAAACTAATACCATACATGTATGGGCTCCTCTACTTCTTCTCGTGAAGCGCTCTTGGAGAATTAATTTTGCCACTCTCAGACCTACTCCCCATAAGGGAAATAAAGTGGAATAGCTAGAAAATGAAGCTAAATGCAACTTCTAAATCACTGTAGTTTCTTATTGAAGGGGATGAAGCGAATATTCTGACCAGTTATTTTGACCTTCATATTTGTGCCTTCCAAGTACTAAAAGGATTAGATATATGAATTTACTTCTTTGGTACTTAAAAGATGTTATGATATAGGCACATGCATTTATACTGCCTACAGTCTCCTGCCTTCATCACTCATAATTTCTGTGTTTTTCTTGCCAGTTTGATGGTGCAAAATTGAGAAAACTCCGACCAAGTTTTAAGGATAAAGATGGTACTGTTACTGCTGGTAACGCTTCTAGCATAAGGTTCGTGGATTTAATTTTCTACCATGTTCTGTTTTTCTTGTTCTCACATGTTTAACAATATTTTTGTTAACATAACCAATATTTCCTACTTCTAGAATCTTGGTTAACTACTCTGAAATTTACTTGCACTAACTCTCTCTCTTTAATTACTGCATCCCAAACAATGGCTGAAAAGATTTGTTGAATACAGTTACAATTATATCTTCACGTTTCTGGTTCATTTGTAAAAAGTAATTTCTTACACTTTGCGTCCATAGTGGGAGCTTAGTTAGTTAGGTCATCTACTATGCTGTTTAAGAACATCTTTCACCTGAAATGTGAATAGTTCAGTGAAACATGATAAGTACTGGCTGTTGAACCCTATTGAAAATTTGAAACTGGAAATCATAATATGATAACTTCAAGAGATTCTTCGTTTATCTTTTCCACTAAAATTTGTTGACAAGAGAAATCTTTCATTTTCAGTGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTGTATGCACTCTTACCTACTTCTTTTAAACTAGCCTGTTTCATTTGTGTGAGCATCCTCCTTAACAGACCTTACTTGCAGGTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAATGGTAAATATTGGAACAGTATGTGAGGGTTGTTCAATGAGATGACCTCAAAAGATGATAATTCCATTAAAATTTCGTTTCGGACTGTACCTTTCATCCTAGTGTTGTATAAGCTCATATGATTCATCAACTGTAATGGAACACTGTACATTTCTTTACTTGGACTTATTAGATCATTTCTGGTTACCTTGGTGTATATATTTGTTTTTGTTTTGCAGGTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAAGTAAATGACCCTCGATTTCAAACATTTTCATGTGTCCAGAGGGCATAGGAGATTGAGTTAGTAACTTCGACATACTTCCCAGTGCACTAAAGGTAGCGACTGCAGGTTTTCCTGAATGATTCTTAATAAATTAAAAAAAAAACACTTCAGAGATATAGCCTTGTGTACTAAATCCACTTCAAATGGACAAATCCAATCTAGTCCCCATTTGTTTCCTAAGCCAATCTAGAGTTCTCCTTGGTCAATGACACAAGTATTTTAAGAAATATGGCACGTGAAAAGTCAGAATTTAGAAGTTCATAAAAAAAAACGCAGGAGATTTTTCTTTAATTAAAGCAGAGACAAGAGTTAGCTAAGATTTTTGAATTTGAACATGTTGTGCACTTGTATTCATATAGAGCTGATTTAACTTATTTGAGTCAGAAGTTTTCAAAGAAACTCAAATATGAACAAACCTCTACAAACTACTATATATACATAAAATTTAATTTTAATCATATACGAATAACGTAATTTTTCATCAATCAAAGAAAATTTCAAATAAACCATCTCTAAGTCTACCGCCCCTTCGACCAGGCCTTAAACAACTTATTTCAATGTTCAAATAAACAATATTGTAACGACCCTTTGTACACTATTTTGGAATCATCGATGAAAATAGCGGCTAGTGTATGGAAACATAGGTATAAAAACCATAATTTTAGCCAGCTAAGTATGAGATGTCCATAGAAAAACACAAGCATCATCATCATCATCATATATATATATAGTGTATGACACAGAATTACAGATTTAAATAACAAATTTCTATGTCATTGTTTTTTTTGAAGTTATAAATCAAAGTGTTAAATTACTCCAAGAAAGTGGTAACCAAAAAACAAGAGGATCCAGTTGTAAAGAGATCAATTAATTCCATAAAACTATTATGGCCTATGATCAACTTGTACTATATATATTTTGAGCCACACTATAATCACTAGCTTGGCCTAAACTATTGTTTTCCAGCTATGCAATCTTTCTGGGGTTTCCAACACAAATTTTTAGTTTTTGTACGTCACCAACCGAGTTTTAAAGTAACGACAAAATTATTTTTATATATTTGTAAGTGATGAATTCAAACTACATAGTAACTAGTGATGTATGTGTTAAAGAGTAAATTACCTATATTATACGATCTTCTAAAGTGAAATCCTTTCATGAACTCTGTATAAATACATATATTTTATATATTAAACTATCCTTTTTTTTTATTATGAAAATCTTAGAGAAATTCACGATCATTTTTTAGACGCATTTCTTTTTAAATTTTTTTATTTATATGACTCGAAATCGTTACATAAGATTTTAAGTGAGAGAAGACTCTAGCTATACTTTTTGCCACAATGTCATTCATATTAATGGTCTTCATTGTCTCATAATTTAATTTTGAAACGTGTATATATATATATATATATACAAATTTAGACAATACTTGTTGTCAATTAATTAAGTGAAAAGAACTTAAATAAGTAGGAGATTGTTGCCAAAAAGAACTTTTTAAACAAGTACCATTACACACATATATATATAGTCTTTCAAACATTATCTATGAATTATGTCAAATTAAGATAAGTGAAGTTTGCTTTTATCGTTCGAGCAACTCCCCTATTAATAAATTAATTAATGTTTGAGTCACAAATCAATAAATAAAGAGAAAAAGGATAAATATATTTTAAACTATCGTAAATCGTGTATAAATATCTTTCATCATATTTTTGGAAATTAGTGTTCTTTTCGTTCAAAAACTTGAACATATATGTCCTTCACTCTAACAGAAGACTAAACAGGGACACGTGGAGCAATTTTATCTGTCAATAAATATTGAATCGGTAGATAAAATTATGACACATGTATATATGTTAGTATAAAGAGTATGTATGCTCTAATTTTTTTACGACAGAGGCAAGTGTACCAAAAGTTTGACGGAGGGTATTTGCATACCATTTACGATAGTTTGGGGTATATTTATCATTTTTTCTATAAATAAATACATCAAATGCAATATGAGTTAGTAGATAATCTGAAATGTCGTAAATGATACAAATACCCTTCATCATATTTTTGAAACATTGATGTCCCTGCCGTTCAAAAACGATATATACCATTTATACTGACGAATAAATACCTGTCATAATCTTATCCATCGATTCGACATTTATTAAATATCGAATCAACAAATAAGATTATGTCACTTGTTTTTATTTAGTCTTTTGTTAGGGGGATGATGAATACTTTAGCCTTACACATAAAATTTAATCCACAACTGAATAAACATGAGTAAAAGTAGTTAGAATGAGAAACGTTTGTGCCAAATTCTTTAGGCATAATACATATATTGGACCCTAAACTTGGTTTCAAATTTTAACTTTAACCTCCAACTTTCATAATGCACAAATAGACATTTTAACTATTCAATTTTTATATAAATAAACACATGAATCCTACATGACATAATACACATGGTACACTACGTAGGACCAAAAAGACATCTAGAATATGTGTGTCTATTTGTTTAACTTTATACAGGTTTAAGTGTCTATTTATGCATATTCAAAATTAAAGAGCATAAATGTAATTTAAAATTAAGTTAAATGACATATTTAGTTATTATGTCAATTTTTTAAATTAAATTTGATTATGATAGAGAAAACTAAAAAAAAAAAAAAAAAACATAACCTGAAAGTGGGCCTACACTGAAAACAATGGGCCCACAGTGAAGCCAGCTGTACGTCTATCTATCTACCTTTTCGAGTCTGTTTCCCTTTTTTCATATTCTTCTTCCCTCTCTCTCTACCATTTCCGTTTCCATTTTGCAGAGACAGAAAGAAGAAAAAGGAGAGAATTTCT</genome_strand>
        <mrna_strand>ATGATTATGCAGTTCAAAGTTTCGAACGTGGAATCGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG............................................................................................................GTTGAGGTGCCTGGAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG..................................................................................................................................................GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT...............................................................................GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA......................................................................................................................................................................................................................................................GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG...................................................................................................................................................GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG..................................................................................................................................................................................................................................................................................................................................GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCCCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACCGAGACTAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E371350" ref_strand="-" ref_description="SGN-E371350 [TUS-27-G1]">
      <seq>aggctataaaactaggattaaatgttattggaaagatctcaggctacgcggatgctgctcaggaacctgaattattcacaactgcccctggtctagcaattcccaaagctatcaaaagtgctagcttaaaggcttttcaaattgattactatgaaataaatgaagcctttgctgtgggatttcttgcaaatcaaaaactggttggttttaatccagaaaaagttaatggacccggtggggctggatctttggggcatccttttggatgcagtggagctcgtatattagttacccttttcgggggggtgagacagaaaaaaggcaaataaggagctgctggggtttgcaaaggaggaggaggggcccccgcccctgtcctaaagcctggggaatcccttttttttggttttgggtagtggttcagactatttatgataaacagtgcttgcaacggattagatttagcagggggttttcaaccaaaaaaaagactctggaacttttactttttcggttttttttttttctttcctttggaatgttaatttaaaacgctttttatttttcaaaaataaatgaaaggtttttcccggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82022" stop="77181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81722" g_stop="81661" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81514" g_stop="81404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="173" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81324" g_stop="81283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="215" r_length="42" r_score="0.881"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246">
            <donor d_prob="0.967" d_score="0.88"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81036" g_stop="80950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="302" r_length="87" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80802" g_stop="80694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="411" r_length="109" r_score="0.862"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322">
            <donor d_prob="0.534" d_score="0.82"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80371" g_stop="80189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="594" r_length="183" r_score="0.880"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80188" i_stop="77506" i_length="2683">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77505" g_stop="77473" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="627" r_length="33" r_score="0.788"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E371350" ref_strand="-">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371350" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81722" e_stop="81661"/>
          <exon e_start="81514" e_stop="81404"/>
          <exon e_start="81324" e_stop="81283"/>
          <exon e_start="81036" e_stop="80950"/>
          <exon e_start="80802" e_stop="80694"/>
          <exon e_start="80371" e_stop="80189"/>
          <exon e_start="77505" e_stop="77473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTGTATGCACTCTTACCTACTTCTTTTAAACTAGCCTGTTTCATTTGTGTGAGCATCCTCCTTAACAGACCTTACTTGCAGGTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAATGGTAAATATTGGAACAGTATGTGAGGGTTGTTCAATGAGATGACCTCAAAAGATGATAATTCCATTAAAATTTCGTTTCGGACTGTACCTTTCATCCTAGTGTTGTATAAGCTCATATGATTCATCAACTGTAATGGAACACTGTACATTTCTTTACTTGGACTTATTAGATCATTTCTGGTTACCTTGGTGTATATATTTGTTTTTGTTTTGCAGGTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAAGTAAATGACCCTCGATTTCAAACATTTTCATGTGTCCAGAGGGCATAGGAGATTGAGTTAGTAACTTCGACATACTTCCCAGTGCACTAAAGGTAGCGACTGCAGGTTTTCCTGAATGATTCTTAATAAATTAAAAAAAAAACACTTCAGAGATATAGCCTTGTGTACTAAATCCACTTCAAATGGACAAATCCAATCTAGTCCCCATTTGTTTCCTAAGCCAATCTAGAGTTCTCCTTGGTCAATGACACAAGTATTTTAAGAAATATGGCACGTGAAAAGTCAGAATTTAGAAGTTCATAAAAAAAAACGCAGGAGATTTTTCTTTAATTAAAGCAGAGACAAGAGTTAGCTAAGATTTTTGAATTTGAACATGTTGTGCACTTGTATTCATATAGAGCTGATTTAACTTATTTGAGTCAGAAGTTTTCAAAGAAACTCAAATATGAACAAACCTCTACAAACTACTATATATACATAAAATTTAATTTTAATCATATACGAATAACGTAATTTTTCATCAATCAAAGAAAATTTCAAATAAACCATCTCTAAGTCTACCGCCCCTTCGACCAGGCCTTAAACAACTTATTTCAATGTTCAAATAAACAATATTGTAACGACCCTTTGTACACTATTTTGGAATCATCGATGAAAATAGCGGCTAGTGTATGGAAACATAGGTATAAAAACCATAATTTTAGCCAGCTAAGTATGAGATGTCCATAGAAAAACACAAGCATCATCATCATCATCATATATATATATAGTGTATGACACAGAATTACAGATTTAAATAACAAATTTCTATGTCATTGTTTTTTTTGAAGTTATAAATCAAAGTGTTAAATTACTCCAAGAAAGTGGTAACCAAAAAACAAGAGGATCCAGTTGTAAAGAGATCAATTAATTCCATAAAACTATTATGGCCTATGATCAACTTGTACTATATATATTTTGAGCCACACTATAATCACTAGCTTGGCCTAAACTATTGTTTTCCAGCTATGCAATCTTTCTGGGGTTTCCAACACAAATTTTTAGTTTTTGTACGTCACCAACCGAGTTTTAAAGTAACGACAAAATTATTTTTATATATTTGTAAGTGATGAATTCAAACTACATAGTAACTAGTGATGTATGTGTTAAAGAGTAAATTACCTATATTATACGATCTTCTAAAGTGAAATCCTTTCATGAACTCTGTATAAATACATATATTTTATATATTAAACTATCCTTTTTTTTTATTATGAAAATCTTAGAGAAATTCACGATCATTTTTTAGACGCATTTCTTTTTAAATTTTTTTATTTATATGACTCGAAATCGTTACATAAGATTTTAAGTGAGAGAAGACTCTAGCTATACTTTTTGCCACAATGTCATTCATATTAATGGTCTTCATTGTCTCATAATTTAATTTTGAAACGTGTATATATATATATATATATACAAATTTAGACAATACTTGTTGTCAATTAATTAAGTGAAAAGAACTTAAATAAGTAGGAGATTGTTGCCAAAAAGAACTTTTTAAACAAGTACCATTACACACATATATATATAGTCTTTCAAACATTATCTATGAATTATGTCAAATTAAGATAAGTGAAGTTTGCTTTTATCGTTCGAGCAACTCCCCTATTAATAAATTAATTAATGTTTGAGTCACAAATCAATAAATAAAGAGAAAAAGGATAAATATATTTTAAACTATCGTAAATCGTGTATAAATATCTTTCATCATATTTTTGGAAATTAGTGTTCTTTTCGTTCAAAAACTTGAACATATATGTCCTTCACTCTAACAGAAGACTAAACAGGGACACGTGGAGCAATTTTATCTGTCAATAAATATTGAATCGGTAGATAAAATTATGACACATGTATATATGTTAGTATAAAGAGTATGTATGCTCTAATTTTTTTACGACAGAGGCAAGTGTACCAAAAGTTTGACGGAGGGTATTTGCATACCATTTACGATAGTTTGGGGTATATTTATCATTTTTTCTATAAATAAATACATCAAATGCAATATGAGTTAGTAGATAATCTGAAATGTCGTAAATGATACAAATACCCTTCATCATATTTTTGAAACATTGATGTCCCTGCCGTTCAAAAACGATATATACCATTTATACTGACGAATAAATACCTGTCATAATCTTATCCATCGATTCGACATTTATTAAATATCGAATCAACAAATAAGATTATGTCACTTGTTTTTATTTAGTCTTTTGTTAGGGGGATGATGAATACTTTAGCCTTACACATAAAATTTAATCCACAACTGAATAAACATGAGTAAAAGTAGTTAGAATGAGAAACGTTTGTGCCAAATTCTTTAGGCATAATACATATATTGGACCCTAAACTTGGTTTCAAATTTTAACTTTAACCTCCAACTTTCATAATGCACAAATAGACATTTTAACTATTCAATTTTTATATAAATAAACACATGAATCCTACATGACATAATACACATGGTACACTACGTAGGACCAAAAAGACATCTAGAATATGTGTGTCTATTTGTTTAACTTTATACAGGTTTAAGTGTCTATTTATGCATATTCAAAATTAAAGAGCATAAATGTAATTTAAAATTAAGTTAAATGACATATTTAGTTATTATGTCAATTTTTTAAATTAAATTTGATTATGATAGAGAAAACTAAAAAAAAAAAAAAAAAACATAACC</genome_strand>
        <mrna_strand>AGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG..................................................................................................................................................GAACCTGAATTATTCACAACTGCCCCTGGTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAAAGGCTTTTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT...............................................................................GTGGGATTTCTTGCAAATCAAAAACTGGTTGGTTTTAATCCA......................................................................................................................................................................................................................................................GAAAAAGTTAATGGACCCGGTGGGGCTGGATCTTTGGGGCATCCTTTTGGATGCAGTGGAGCTCGTATATTAGTTACCCTTTTCGGG...................................................................................................................................................GGGGTGAGACAGAAAAAAGGCAAATAAGGAGCTGCTGGGGTTTGCAAAGGAGGAGGAGGGGCCCCCGCCCCTGTCCTAAAGCCTGGGGAATCCCTTTTTTTTGGTTTTG..................................................................................................................................................................................................................................................................................................................................GGTAGTGGTTCAGACTATTTATGATAAACAGTGCTTGCAACGGATTAGATTTAGCAGGGGGTTTTCAACCAAAAAAAAGACTCTGGAACTTTTACTTTTTCGGTTTTTTTTTTTTCTTTCCTTTGGAATGTTAATTTAAAACGCTTTTTATTTTTCAAAAATAAATGAAAGGTTTTTCCCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E402224" ref_strand="-" ref_description="SGN-E402224 [PPC-7-I9]">
      <seq>actagttctctcctgcattggtcttagtaagtggagagaaggctataaaactaggattaaatgttattggaaagatctcaggctacgcggatgctgctcaggaacctgaattattcacaactgcacctgctctagcaattcccaaagctatcaaaagtgctagcttagaggcttctcaaattgattactatgaaataaatgaagcctttgctgtggtatctcttgcaaatcaaaagctgcttggtcttaatcctgaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattggttacacttctcggggtgttgagacagaaaaatgggaaatatggagctgctggtgtttgcaatggaggaggaggtgcctcagcccttgtcctagagcttgtgtaatccttttttgtttttggttagtgtttcagactatttatgatagacggtgcttgcaacagattagatctggcagggcgtcttcaaccagagatgactctgcaacttcgttttctttgtcttctttcctttgtaatgttaatttaagaagttgtattcttcaaaaataaatgaaagctggtcaggttcttcacgaagtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82062" stop="77175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81760" g_stop="81661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="101" r_length="99" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81514" g_stop="81404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="212" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81324" g_stop="81283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="254" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81036" g_stop="80950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80802" g_stop="80694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="447" r_length="106" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322">
            <donor d_prob="0.534" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80371" g_stop="80181" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="624" r_length="177" r_score="0.838"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80180" i_stop="77506" i_length="2675">
            <donor d_prob="0.000" d_score="0.70"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77505" g_stop="77481" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="649" r_length="25" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E402224" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402224" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81760" e_stop="81661"/>
          <exon e_start="81514" e_stop="81404"/>
          <exon e_start="81324" e_stop="81283"/>
          <exon e_start="81036" e_stop="80950"/>
          <exon e_start="80802" e_stop="80694"/>
          <exon e_start="80371" e_stop="80181"/>
          <exon e_start="77505" e_stop="77481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTGTATGCACTCTTACCTACTTCTTTTAAACTAGCCTGTTTCATTTGTGTGAGCATCCTCCTTAACAGACCTTACTTGCAGGTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAATGGTAAATATTGGAACAGTATGTGAGGGTTGTTCAATGAGATGACCTCAAAAGATGATAATTCCATTAAAATTTCGTTTCGGACTGTACCTTTCATCCTAGTGTTGTATAAGCTCATATGATTCATCAACTGTAATGGAACACTGTACATTTCTTTACTTGGACTTATTAGATCATTTCTGGTTACCTTGGTGTATATATTTGTTTTTGTTTTGCAGGTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAAGTAAATGACCCTCGATTTCAAACATTTTCATGTGTCCAGAGGGCATAGGAGATTGAGTTAGTAACTTCGACATACTTCCCAGTGCACTAAAGGTAGCGACTGCAGGTTTTCCTGAATGATTCTTAATAAATTAAAAAAAAAACACTTCAGAGATATAGCCTTGTGTACTAAATCCACTTCAAATGGACAAATCCAATCTAGTCCCCATTTGTTTCCTAAGCCAATCTAGAGTTCTCCTTGGTCAATGACACAAGTATTTTAAGAAATATGGCACGTGAAAAGTCAGAATTTAGAAGTTCATAAAAAAAAACGCAGGAGATTTTTCTTTAATTAAAGCAGAGACAAGAGTTAGCTAAGATTTTTGAATTTGAACATGTTGTGCACTTGTATTCATATAGAGCTGATTTAACTTATTTGAGTCAGAAGTTTTCAAAGAAACTCAAATATGAACAAACCTCTACAAACTACTATATATACATAAAATTTAATTTTAATCATATACGAATAACGTAATTTTTCATCAATCAAAGAAAATTTCAAATAAACCATCTCTAAGTCTACCGCCCCTTCGACCAGGCCTTAAACAACTTATTTCAATGTTCAAATAAACAATATTGTAACGACCCTTTGTACACTATTTTGGAATCATCGATGAAAATAGCGGCTAGTGTATGGAAACATAGGTATAAAAACCATAATTTTAGCCAGCTAAGTATGAGATGTCCATAGAAAAACACAAGCATCATCATCATCATCATATATATATATAGTGTATGACACAGAATTACAGATTTAAATAACAAATTTCTATGTCATTGTTTTTTTTGAAGTTATAAATCAAAGTGTTAAATTACTCCAAGAAAGTGGTAACCAAAAAACAAGAGGATCCAGTTGTAAAGAGATCAATTAATTCCATAAAACTATTATGGCCTATGATCAACTTGTACTATATATATTTTGAGCCACACTATAATCACTAGCTTGGCCTAAACTATTGTTTTCCAGCTATGCAATCTTTCTGGGGTTTCCAACACAAATTTTTAGTTTTTGTACGTCACCAACCGAGTTTTAAAGTAACGACAAAATTATTTTTATATATTTGTAAGTGATGAATTCAAACTACATAGTAACTAGTGATGTATGTGTTAAAGAGTAAATTACCTATATTATACGATCTTCTAAAGTGAAATCCTTTCATGAACTCTGTATAAATACATATATTTTATATATTAAACTATCCTTTTTTTTTATTATGAAAATCTTAGAGAAATTCACGATCATTTTTTAGACGCATTTCTTTTTAAATTTTTTTATTTATATGACTCGAAATCGTTACATAAGATTTTAAGTGAGAGAAGACTCTAGCTATACTTTTTGCCACAATGTCATTCATATTAATGGTCTTCATTGTCTCATAATTTAATTTTGAAACGTGTATATATATATATATATATACAAATTTAGACAATACTTGTTGTCAATTAATTAAGTGAAAAGAACTTAAATAAGTAGGAGATTGTTGCCAAAAAGAACTTTTTAAACAAGTACCATTACACACATATATATATAGTCTTTCAAACATTATCTATGAATTATGTCAAATTAAGATAAGTGAAGTTTGCTTTTATCGTTCGAGCAACTCCCCTATTAATAAATTAATTAATGTTTGAGTCACAAATCAATAAATAAAGAGAAAAAGGATAAATATATTTTAAACTATCGTAAATCGTGTATAAATATCTTTCATCATATTTTTGGAAATTAGTGTTCTTTTCGTTCAAAAACTTGAACATATATGTCCTTCACTCTAACAGAAGACTAAACAGGGACACGTGGAGCAATTTTATCTGTCAATAAATATTGAATCGGTAGATAAAATTATGACACATGTATATATGTTAGTATAAAGAGTATGTATGCTCTAATTTTTTTACGACAGAGGCAAGTGTACCAAAAGTTTGACGGAGGGTATTTGCATACCATTTACGATAGTTTGGGGTATATTTATCATTTTTTCTATAAATAAATACATCAAATGCAATATGAGTTAGTAGATAATCTGAAATGTCGTAAATGATACAAATACCCTTCATCATATTTTTGAAACATTGATGTCCCTGCCGTTCAAAAACGATATATACCATTTATACTGACGAATAAATACCTGTCATAATCTTATCCATCGATTCGACATTTATTAAATATCGAATCAACAAATAAGATTATGTCACTTGTTTTTATTTAGTCTTTTGTTAGGGGGATGATGAATACTTTAGCCTTACACATAAAATTTAATCCACAACTGAATAAACATGAGTAAAAGTAGTTAGAATGAGAAACGTTTGTGCCAAATTCTTTAGGCATAATACATATATTGGACCCTAAACTTGGTTTCAAATTTTAACTTTAACCTCCAACTTTCATAATGCACAAATAGACATTTTAACTATTCAATTTTTATATAAATAAACACATGAATCCTACATGACATAATACACATGGTACACTACGTAGGACCAAAAAGACATCTAGAATATGTGTGTCTATTTGTTTAACTTTATACAGGTTTAAGTGTCTATTTATGCATATTCAAAATTAAAGAGCATAAATGTAATTTAAAATTAAGTTAAATGACATATTTAGTTATTATGTCAATTTTTTAAATTAAATTTGATTATGATAGAGAAAACTAAAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>TAGTTCT-CTCCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG..................................................................................................................................................GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT...............................................................................GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCT......................................................................................................................................................................................................................................................GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTGGTTACACTTCTCGGG...................................................................................................................................................GTGTTGAGACAGAAAAATGGGAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCAGCCCTTGTCCTAGAGCTTGTGTAATCC---TTTTTTGTTTTTG..................................................................................................................................................................................................................................................................................................................................GTTAGTGTTTCAGACTATTTATGATAGACGGTGCTTGCAACAGATTAGATCTGGCAGGGCGTCTTCAACC--AGAGATGACTCTG------C-A--ACTTCGTTTTCTTTGTCTTCTTTCCTTTGTAATGTTAATTTAAGAAG--TTGTATTCTTCAAAAATAAATGAAA-GCTGGTCAGGTTCTTCACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E712310" ref_strand="+" ref_description="SGN-E712310 [FB04CA03]">
      <seq>ctccgaccaagttttaaggataaagatggtactgttactgctggtaacgcttctagcataagtgatggtgctgctgcattggtcttagtaagtggagagaaggctataaaactaggattaaatgttattggaaagatctcaggctacgcggatgctgctcaggaacctgaattattcacaactgcacctgctctagcaattcccaaagctatcaaaagtgctagcttagaggcttctcaaattgattactatgaaataaatgaagcctttgctgtggtatctcttgcaaatcaaaagctgcttggtcttaatccagaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattagttacacttctcggggtgttgagacagaaaaatggcaaatatggagctgctggtgtttgcaatggaggaggaggtgcctccgcccttgtcctagagcttgtgtaatcctttttttttgtttttggttagtgtttcagactatttatgatagacagtgcttgcaacggattagatctagcagggcgtcttcaaccagagagatgactctgtaacttctacttcttcgttttctttttcttctttcctttgtaatgttaatttaagacgctttttattcttcaaaaataaatgaaaggttcttcacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82587" stop="79889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82287" g_stop="82226" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82225" i_stop="81761" i_length="465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81760" g_stop="81661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="162" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81514" g_stop="81404" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="273" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81324" g_stop="81283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="315" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81036" g_stop="80950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80802" g_stop="80694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="511" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80371" g_stop="80189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="694" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E712310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82287" e_stop="82226"/>
          <exon e_start="81760" e_stop="81661"/>
          <exon e_start="81514" e_stop="81404"/>
          <exon e_start="81324" e_stop="81283"/>
          <exon e_start="81036" e_stop="80950"/>
          <exon e_start="80802" e_stop="80694"/>
          <exon e_start="80371" e_stop="80189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGACCAAGTTTTAAGGATAAAGATGGTACTGTTACTGCTGGTAACGCTTCTAGCATAAGGTTCGTGGATTTAATTTTCTACCATGTTCTGTTTTTCTTGTTCTCACATGTTTAACAATATTTTTGTTAACATAACCAATATTTCCTACTTCTAGAATCTTGGTTAACTACTCTGAAATTTACTTGCACTAACTCTCTCTCTTTAATTACTGCATCCCAAACAATGGCTGAAAAGATTTGTTGAATACAGTTACAATTATATCTTCACGTTTCTGGTTCATTTGTAAAAAGTAATTTCTTACACTTTGCGTCCATAGTGGGAGCTTAGTTAGTTAGGTCATCTACTATGCTGTTTAAGAACATCTTTCACCTGAAATGTGAATAGTTCAGTGAAACATGATAAGTACTGGCTGTTGAACCCTATTGAAAATTTGAAACTGGAAATCATAATATGATAACTTCAAGAGATTCTTCGTTTATCTTTTCCACTAAAATTTGTTGACAAGAGAAATCTTTCATTTTCAGTGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTGTATGCACTCTTACCTACTTCTTTTAAACTAGCCTGTTTCATTTGTGTGAGCATCCTCCTTAACAGACCTTACTTGCAGGTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAATGGTAAATATTGGAACAGTATGTGAGGGTTGTTCAATGAGATGACCTCAAAAGATGATAATTCCATTAAAATTTCGTTTCGGACTGTACCTTTCATCCTAGTGTTGTATAAGCTCATATGATTCATCAACTGTAATGGAACACTGTACATTTCTTTACTTGGACTTATTAGATCATTTCTGGTTACCTTGGTGTATATATTTGTTTTTGTTTTGCAGGTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA</genome_strand>
        <mrna_strand>CTCCGACCAAGTTTTAAGGATAAAGATGGTACTGTTACTGCTGGTAACGCTTCTAGCATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG..................................................................................................................................................GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT...............................................................................GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA......................................................................................................................................................................................................................................................GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG...................................................................................................................................................GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG..................................................................................................................................................................................................................................................................................................................................GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E369575" ref_strand="-" ref_description="SGN-E369575 [TUS-25-J16]">
      <seq>ttaaatgttatggaaagatctcaggctacgcggatgctgctcaggtacttcatatctatgaatttgagaatagagtttaggcactccttgtgtaagattttggagtaccaatggttattacctttttactttccttatctggtggttaaacttacgctcttgatgttctcatctaaatttaatcttgcaggaacctgaattattcacaactgcacctgctctagcaattcccaaagctatcaaaagtgctagcttagaggcttctcaaattgattactatgaaataaatgaagcctttgctgtggtatctcttgcaaatcaaaagctgcttggtcttaatccagaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattagttacacttctcggggtgttgagacagaaaaatggcaaatatggagctgctggtgtttgcaatggaggaggaggtgcctccgcccttgtcctagagcttgtgtaatcctttttttttgtttttggttagtgtttcagactatttatgatagacagtgcttgcaacggattagatctagcagggcgtcttcaaccagaaagatgactctgtaacttctacttcttcgttttctttttcttctttcctttgtaatgttaatttaagacgctttttattcttcaaaaataaatgaaaggttcttcacgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="82005" stop="79884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81705" g_stop="81404" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81324" g_stop="81283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="343" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81036" g_stop="80950" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="430" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80802" g_stop="80694" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="539" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80371" g_stop="80189" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="722" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="736"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E369575" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369575" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81705" e_stop="81404"/>
          <exon e_start="81324" e_stop="81283"/>
          <exon e_start="81036" e_stop="80950"/>
          <exon e_start="80802" e_stop="80694"/>
          <exon e_start="80371" e_stop="80189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCTGTATGCACTCTTACCTACTTCTTTTAAACTAGCCTGTTTCATTTGTGTGAGCATCCTCCTTAACAGACCTTACTTGCAGGTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAATGGTAAATATTGGAACAGTATGTGAGGGTTGTTCAATGAGATGACCTCAAAAGATGATAATTCCATTAAAATTTCGTTTCGGACTGTACCTTTCATCCTAGTGTTGTATAAGCTCATATGATTCATCAACTGTAATGGAACACTGTACATTTCTTTACTTGGACTTATTAGATCATTTCTGGTTACCTTGGTGTATATATTTGTTTTTGTTTTGCAGGTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA</genome_strand>
        <mrna_strand>TTAAATGTTA-TGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT...............................................................................GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA......................................................................................................................................................................................................................................................GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG...................................................................................................................................................GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG..................................................................................................................................................................................................................................................................................................................................GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAAAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E549778" ref_strand="+" ref_description="SGN-E549778 [TUS-6-K9]">
      <seq>tggtatctcttgcaaatcaaaagctgcttggtcttaatccagtgagtgctgcatctatcctatatgcttattaaatcttgagatacaaaatttgttaatctctttaacttcgacactctcagtcgggatgtattatctaagaaaactgtttttggattatatgcttttatacgaaaatggaacaaggataagatcacattaagtcttaacttttacttggtctggtggtattttatatagtgtggaacaagcacagaatgatagtaaccttttgtttgttcactcaggaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattagttacacttctcggggtacgtgtcactactgcaacattttggtgttttaagttcaaatgattgtttcttttaatgtcctcttttcttctgacatgaatattgagaaatctattgtccgttgacggttgcttcaaatctattttctcaatacaatgtttgcaggtgttgagacagaaaaatggcaaatatggagctgctggcgtttgcaatggaggaggaggtgcctccgcccttgtcctaaagcttgtgtaatcatttttttttgtttttggtaggtccgaagattggaaactcattgagaattttgtctaccaagtgatattgcctgtatagaattcagagatgctcttgatagatcatttaactggacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="81623" stop="80288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81323" g_stop="80588" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E549778" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81323" e_stop="80588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAAT</genome_strand>
        <mrna_strand>TGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGCGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAAAGCTTGTGTAATCATTTTTTTTTGTTTTTGGTAGGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAA-GTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E243800" ref_strand="+" ref_description="SGN-E243800 [cLED-35-P9]">
      <seq>atctcttgcaaatcaaaagctgcttggtcttaatccagtgagtgctgcatctatcctatatgcttattaaatcttgagatacaaaatttgttaatctctttaacttcgacactctcagtcgggatgtattatctaagaaaactgcttttggattatatgcttttatacgaaaatggaacaaggataagatcacattaagtcttaacttttacttggtctggtggtattttatatagtgtggaacaagcacagaatgatagtaaccttttgtttgttcactcaggaaaaagttaatgtacacggtggggctgtatctttggggcatcctcttggatgcagtggagctcgtatattagttacacttctcggggtacgtgtcactactgcaacattttggtgttttaagttcaaatgattgtttcttttaatgtcctcttttcttctgacatgaatattgagaaatctattgtcccttgacgggtgcttcaaatctattttctcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="81619" stop="80515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81319" g_stop="80815" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E243800" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81319" e_stop="80815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATA</genome_strand>
        <mrna_strand>ATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGCTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCCTTGACGGGTGCTTCAAATCTATTTTCTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E709318" ref_strand="+" ref_description="SGN-E709318 [FA51BF12]">
      <seq>cgacctgattagttttgggtgaaacagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgcagaaacatgtgcttctaatcataaaattacaagagaggagcaggatgattatgcagttcaaagtttcgaacgtggaattgctgctcaggaagcaggtgctttcccatgggagattgtaccggttgaggtgcctggaggaagaggaaagccatccattattgttgacaaggatgacggtctaggaaagtttgatggtgcaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86162" stop="82385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85863" g_stop="85775" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="188" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="362" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="468" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="607" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82953" g_stop="82876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="685" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82767" g_stop="82702" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="751" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E709318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85863" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
          <exon e_start="82953" e_stop="82876"/>
          <exon e_start="82767" e_stop="82702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAGGTTTGTCTTTATATACATATTTGTTTTTCTATAATTTGCATCATGCTGCAAGATTGGCTCTGACTTTAATTCGATATACCAAAGATTTTTCTACTCTTGTTTTTTCTAATTTATACTTACACATCAATTCCACCTTATCTTTGTTTTTGGTTCTTTTGATGTTTGGTAATTGATACCACCATTTGTTGAAGCTTCTATGAGAAACAATAACTATTGTGGTACATGTGGTCTGCTCTTTCTAATGCTGTGTCATTATTTTTATGCAATGTTGAACCATTTTGATTTTCTATTCCCTGTTCCACTTGTTTGCCACACACACAACCAAAGTGGATCATCATTCTGTTTTCTCTTAGTTTTCAGCTATCCGCTAAGTAGATTTGCTGAAGTCTTTTATTTTCTGAAGCCTGAAGAAGTCAAGCACTTATATCTCTCTTATATTTGCAGGATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCGGTAAAAGTTATTAGCACTTGGTCTCTAGATATTTCTTCATACTCAAATAAAGCAACTTCTTTGCAGTTCGTTTATTTTATGGTTCTAATGAATTCTGACAATGTTCAGGTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGACGGTCTAGGAAAG</genome_strand>
        <mrna_strand>CGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCCCATGGGAGATTGTACCG............................................................................................................GTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGACGGTCTAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E343903" ref_strand="+" ref_description="SGN-E343903 [cTOF-12-F6]">
      <seq>ttcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgcagaaacatgtgcttctaatcataaaattacaagagaggagcaggatgattatgcagttcaaagtttcgaacgtggaattgctgctcangaagcangtgctttcgcatgggagattgtacccgttgaggtgcctggaggaaagagaaagccatccattattgttgacaaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86117" stop="82415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85817" g_stop="85775" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="142" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="316" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="422" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="561" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82953" g_stop="82876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="639" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82767" g_stop="82715" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="692" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E343903" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85817" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
          <exon e_start="82953" e_stop="82876"/>
          <exon e_start="82767" e_stop="82715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAGGTTTGTCTTTATATACATATTTGTTTTTCTATAATTTGCATCATGCTGCAAGATTGGCTCTGACTTTAATTCGATATACCAAAGATTTTTCTACTCTTGTTTTTTCTAATTTATACTTACACATCAATTCCACCTTATCTTTGTTTTTGGTTCTTTTGATGTTTGGTAATTGATACCACCATTTGTTGAAGCTTCTATGAGAAACAATAACTATTGTGGTACATGTGGTCTGCTCTTTCTAATGCTGTGTCATTATTTTTATGCAATGTTGAACCATTTTGATTTTCTATTCCCTGTTCCACTTGTTTGCCACACACACAACCAAAGTGGATCATCATTCTGTTTTCTCTTAGTTTTCAGCTATCCGCTAAGTAGATTTGCTGAAGTCTTTTATTTTCTGAAGCCTGAAGAAGTCAAGCACTTATATCTCTCTTATATTTGCAGGATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCGGTAAAAGTTATTAGCACTTGGTCTCTAGATATTTCTTCATACTCAAATAAAGCAACTTCTTTGCAGTTCGTTTATTTTATGGTTCTAATGAATTCTGACAATGTTCAGGTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGA</genome_strand>
        <mrna_strand>TTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCANGAAGCANGTGCTTTCGCATGGGAGATTGTACCC............................................................................................................GTTGAGGTGCCTGGAGGAAAGAGAAAGCCATCCATTATTGTTGACAAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E560885" ref_strand="+" ref_description="SGN-E560885 [20609]">
      <seq>agcagcagcagataccatcaagcctaaagatgtttgcattgttggtgttgcccgtactccaatggggagcttccttggttctctttcctcgttgccagctacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtaaaaagtcttctttggaaatgtcctcagtgcaaacctggngacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcacgactgtgaacaaggtttgtgcatctggcttgaaagcaactatgcttgcagctcaaagtatccagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatatattgcaaagcaaggaagggatctcgtcttggacatgatagtctagttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgcagaaacatgtgctgcaaatcataaaattacaagagaggagcaggatgattatgcagttcaaagttttgaacgtggaattgctgctcaggaagctggtgctttcgcatgggagattgtaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86103" stop="82575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85803" g_stop="85775" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="128" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="301" r_length="173" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="406" r_length="105" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="545" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82953" g_stop="82876" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="623" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E560885" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85803" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
          <exon e_start="82953" e_stop="82876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGG-GACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAGGTTTGTCTTTATATACATATTTGTTTTTCTATAATTTGCATCATGCTGCAAGATTGGCTCTGACTTTAATTCGATATACCAAAGATTTTTCTACTCTTGTTTTTTCTAATTTATACTTACACATCAATTCCACCTTATCTTTGTTTTTGGTTCTTTTGATGTTTGGTAATTGATACCACCATTTGTTGAAGCTTCTATGAGAAACAATAACTATTGTGGTACATGTGGTCTGCTCTTTCTAATGCTGTGTCATTATTTTTATGCAATGTTGAACCATTTTGATTTTCTATTCCCTGTTCCACTTGTTTGCCACACACACAACCAAAGTGGATCATCATTCTGTTTTCTCTTAGTTTTCAGCTATCCGCTAAGTAGATTTGCTGAAGTCTTTTATTTTCTGAAGCCTGAAGAAGTCAAGCACTTATATCTCTCTTATATTTGCAGGATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG</genome_strand>
        <mrna_strand>AGCAGCAGCAGATACCATCAAGCCTAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGAGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCTACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTA-AA-AAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGNGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACGACTGTGAACAAGGTTTGTGCATCTGGCTTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATCCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATATATTGCA-AAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTAGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTGCAAATCATAAAATTACAAGAGAGGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTATGCAGTTCAAAGTTTTGAACGTGGAATTGCTGCTCAGGAAGCTGGTGCTTTCGCATGGGAGATTGTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E327599" ref_strand="+" ref_description="SGN-E327599 [cTOC-20-B17]">
      <seq>tcactttgtttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgcagaaacatgtgctttctatcataaaattacaagagaggagcaggatgattatgcagttcaaagtttcgaacgtggaattgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87126" stop="82612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86826" g_stop="86770" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="119" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="218" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="392" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="498" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="637" r_length="139" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82953" g_stop="82912" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="679" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E327599" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86826" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
          <exon e_start="82953" e_stop="82912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAGGTTTGTCTTTATATACATATTTGTTTTTCTATAATTTGCATCATGCTGCAAGATTGGCTCTGACTTTAATTCGATATACCAAAGATTTTTCTACTCTTGTTTTTTCTAATTTATACTTACACATCAATTCCACCTTATCTTTGTTTTTGGTTCTTTTGATGTTTGGTAATTGATACCACCATTTGTTGAAGCTTCTATGAGAAACAATAACTATTGTGGTACATGTGGTCTGCTCTTTCTAATGCTGTGTCATTATTTTTATGCAATGTTGAACCATTTTGATTTTCTATTCCCTGTTCCACTTGTTTGCCACACACACAACCAAAGTGGATCATCATTCTGTTTTCTCTTAGTTTTCAGCTATCCGCTAAGTAGATTTGCTGAAGTCTTTTATTTTCTGAAGCCTGAAGAAGTCAAGCACTTATATCTCTCTTATATTTGCAGGATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCT</genome_strand>
        <mrna_strand>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTTCTATCATAAAATTACAAGAGAGGAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E576362" ref_strand="+" ref_description="SGN-E576362 [59569]">
      <seq>gtgctctgctccatcgaaatctccttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggagcttccttggttctctttcctcgttgccagctacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagccgcattgggtgcaggactacccaatacggtggtttgcacgactgtgaacaaagtttgtgcatctggtttgaaagcaactatgcttgcagctcaaagtatccagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatatattgcagaagcaaggaagggatctcgtcttggacatgatagtctagttgatggaatgcttacagatggtttgactgatgtttataacggattgtggtatgggagtttgtgcagaaacatgtgctgcaaatcataaaattacaagagaggaggcaggatgattatgcagttccaagtttgaacgtggaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86138" stop="82616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="99" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="198" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="372" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="478" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="619" r_length="141" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444">
            <donor d_prob="0.986" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82953" g_stop="82916" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="656" r_length="37" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E576362" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
          <exon e_start="82953" e_stop="82916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAA-GGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGA-GCAGGTTTGTCTTTATATACATATTTGTTTTTCTATAATTTGCATCATGCTGCAAGATTGGCTCTGACTTTAATTCGATATACCAAAGATTTTTCTACTCTTGTTTTTTCTAATTTATACTTACACATCAATTCCACCTTATCTTTGTTTTTGGTTCTTTTGATGTTTGGTAATTGATACCACCATTTGTTGAAGCTTCTATGAGAAACAATAACTATTGTGGTACATGTGGTCTGCTCTTTCTAATGCTGTGTCATTATTTTTATGCAATGTTGAACCATTTTGATTTTCTATTCCCTGTTCCACTTGTTTGCCACACACACAACCAAAGTGGATCATCATTCTGTTTTCTCTTAGTTTTCAGCTATCCGCTAAGTAGATTTGCTGAAGTCTTTTATTTTCTGAAGCCTGAAGAAGTCAAGCACTTATATCTCTCTTATATTTGCAGGATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGC</genome_strand>
        <mrna_strand>ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGAGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCTACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCCGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACGACTGTGAACAAAGTTTGTGCATCTGGTTTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATCCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATATATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTAGTTGATGGAATGCTTACAGATGGTTTGACTGATGTTTATAACGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTGCAAATCATAAAATTACAAGAGAGGAGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATTATGCAGTTCCAAGTTT-GAACGTGGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E369576" ref_strand="+" ref_description="SGN-E369576 [TUS-25-J16]">
      <seq>ttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgcagaaacatgtgcttctaatcatataattacaagagaggagcaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87117" stop="83095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86817" g_stop="86770" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="110" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="209" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="383" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="489" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83398" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="628" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E369576" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86817" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG</genome_strand>
        <mrna_strand>TTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATATAATTACAAGAGAGGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E328829" ref_strand="+" ref_description="SGN-E328829 [cTOC-24-G7]">
      <seq>tcactttgtttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgtttataaggattgtggtatgggagtttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87126" stop="83141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86826" g_stop="86770" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="119" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="218" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="392" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="498" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83441" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="594" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E328829" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86826" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGC</genome_strand>
        <mrna_strand>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E248844" ref_strand="+" ref_description="SGN-E248844 [cLEF-49-K5]">
      <seq>ttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaagtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgatagtctggttgatggaatgcttaaagatggtttgactgatgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87117" stop="83168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86817" g_stop="86770" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="110" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="209" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="383" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="489" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83468" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="558" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E248844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86817" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTA</genome_strand>
        <mrna_strand>TTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAAGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E324270" ref_strand="+" ref_description="SGN-E324270 [cTOC-4-K4]">
      <seq>ctttgtttgtgctctgctccattgaaatcatcgaaatctgtttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaagtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87123" stop="83212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86823" g_stop="86770" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="116" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="215" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="389" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="495" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83512" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="520" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E324270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86823" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGAT</genome_strand>
        <mrna_strand>CTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTGTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAAGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E331191" ref_strand="+" ref_description="SGN-E331191 [cTOD-6-E1]">
      <seq>tttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagcatgtccaatgttcccaaatacattgcagaagcaaggaagggatctcgtcttggacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87118" stop="83212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86818" g_stop="86770" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="111" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="210" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="384" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84140" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="490" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83536" g_stop="83512" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="515" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E331191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86818" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84140"/>
          <exon e_start="83536" e_stop="83512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAGGTTTGCGTTCTTCAAAAGTTGAACCACTGTGATAGTACAATTTCTTTTAAGAAGCACCTCAGTCTCCCTTAGCAAAGAAGGATAGTGATACAAAATGATATGTTTTCGAGTCACACACTTTAGGAAGAGTGGTGCTGTTTTCTTACGACTTTCCCAAGGCACATTTTATAAATATGTCTACAACTTCGAACCTATCTTTTTGTGCTTCAACAGCATACATTTTATAAATATGTCTACAACTTCGAACCTATCTTAAGTTCTTCACATGCTTAATCAACAATTACAAAGCCAGCTCATATTCCTGTTAACCCGCTTTCATCACTTCTTATTATTCATGCTTGCACCTTGACCCATTTATGATCTGTTCCTCATCAGCCATACATTATTAGATCTCTCCCCGTTGAGTTTTATGATCTGTTCCCAGTCAGAAATAAATTTATAGATCTCTCCCCACTGAGTTTTATATGGTTAATGTATTGTTCGTAATACGGTAGACTTGTTGCGCTGGTCACTTCTATTTTTTTCCATTACAAAAGTTCTTATTAGTTAATATCGTTCTTCAATTCTGTTTTATCACTTCATTGATCAATGCCATAATCACAGGAAGGGATCTCGTCTTGGACATGAT</genome_strand>
        <mrna_strand>TTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGATCTCGTCTTGGACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E270261" ref_strand="+" ref_description="SGN-E270261 [cLEM-1-G3]">
      <seq>ctgattagttttgggtgaaacagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttacttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttgcagctcaaagtattcagttgggcatcaatgaggtggttgtggctggtggaatggaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86159" stop="83874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85859" g_stop="85775" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="184" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="358" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84174" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="430" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E270261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85859" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCA</genome_strand>
        <mrna_strand>CTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTACTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E221388" ref_strand="+" ref_description="SGN-E221388 [cLEL-22-N2]">
      <seq>tcgtttgtgctctgctccattgaaatcatcgaaatctctttcaacttctgagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctaggcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="87121" stop="84064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86821" g_stop="86770" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85836" g_stop="85775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="114" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="213" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="387" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84245" g_stop="84234" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="399" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E221388" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86821" e_stop="86770"/>
          <exon e_start="85836" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAGGTATTTCAATTCATAATCAGTCTCTACCGATCAGCATTTCTGTGTTTTCATCTCATTTTTATTTAATCTTGTATTTTATTTAACAAATTTATGTTAAATAATGCTAGAAATTTGAAATTCTTTTTTTTTTCTAGTTTGGATCTGCGAGCGAATCAGGTGAGGCGTATATAGTTCTATGTATTTACAGTATTTAGTGAATCATTTCATCATTTTCTAGATCGCATACTGTCACCCTTTTTGTTTCAATATTCATTTGCTTGATGAGCCTATTTTCAAGTCTCACTTATAGGGCGTGTTCCGTACGAAGGAATTTTCCATTAAAAATGTTTTTTAGGAAAATAGCTGGGTTTCTTAGTAAGTTGCTTGTGTAAAAAAATATATTTCTTGAAATAGTTTTATTTATGTAACGTAGACAAACATGTGAGGTGGGTTTAGGGTAGAGTTGTGGGATGGTGGGGAAAAAGATGAGTTGTGTAGAGGTCGGGGAGGACCCAATACAAGGTGACATGTTACTTGTGGAACTTTGTTTTTCTACTTTAATTTCGTTAGAGAAGTCATTTTCCTCGTTTATTATCTTCCAAAGGGAAAATTGAAAAATGTTTTCTTTCAGACCGATCACACCCTTGGTATCAAGGAATTAGAAAAAAAATATATTTTAAGACGAATTTCACATTTTTTGGCTTATAGTGCACTAGCTAATCTATGACTTGATGGTGCTGATTGATGTATGAAAATATCTTTGGGAAAGATAGTATAGTAGATGTGTTGTAGTTGAGGCTATGTTTTTCATTTGTCATGCTTTTTTCTTTGCTATGATTTGATATATAATATGAAATTTAGGTGATATTTGGGTCATACAATTTTTTTTCTATTGATGGTATTGTGATTCCTTTTGTTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATGCTTG</genome_strand>
        <mrna_strand>TCGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E337955" ref_strand="+" ref_description="SGN-E337955 [cTOE-14-C21]">
      <seq>ttctgagaaagagacctgattagttttgggtgaaacagacatccattttcatacatattcacaatggctccagcagcagcagataccatcaagcctagagatgtttgcattgttggtgttgcccgtactccaatggggggcttccttggttctctttcctcgttgccagccacaaaacttggatcaatagccattgagggtgctcttaagaaagcaaatgttgatccatcactagtagaagaagtcttctttggaaatgtcctcagtgcaaacctgggacaggctcctgctatgcaagctgcattgggtgcaggactacccaatacggtggtttgcaccactgtgaacaaagtttgtgcatctggattgaaagcaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="86169" stop="84064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85874" g_stop="85775" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84742" g_stop="84644" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="199" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84537" g_stop="84364" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="373" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84245" g_stop="84238" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="381" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E337955" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85874" e_stop="85775"/>
          <exon e_start="84742" e_stop="84644"/>
          <exon e_start="84537" e_stop="84364"/>
          <exon e_start="84245" e_stop="84238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAGGTAACAACTTATGCTCTCTTAGTACCTAGCCTAGAATCTTTATTTGATGTGAAGATAGCCAGTTGATTGTTGATGCTTCGTGTATGAGCCAGCACTAAAATCTATGCAAATTTGATTTTCATGGTGACCATTTATTAGTAGCCAGGGGTGTTCTTTGGTCCCATGGCTATTCACATGGATGAACAATCTTCTATGCTTACACAAGAACTTAGTGTTTTGTCCATTTTTGTATTTGATTTTTTCATTAAAATTTTCAATCATTAAAAAGTAGTTTTCTATAGATAGTCATTAGGAAATAAACAGTTGCTTTCTATTTGGAGGATATTGTCTCTTTTACATAAAGAGGAAAAATAATCTGTTTTATCTGTCTCGTATTTTCCACATTCCTAACAAACTGAAAGTGTGAGCATTTCTATAAGTCAGTCTTACCATGAGACACTGTTGAATCTGACCTGGGTTTTTGCTAATATATGTGGATTTCATTAGGCAAGTCTTGATTTTGTATGGTCAGTTGGATATTTGTTCACGAAATGCAAAAGCTTCAAATGCACATTGCAAGGTTAACTTGTAGTTTCAGTTACTTAAAACATACCTTCTTTTTTTTAATAATCTCTAGTTGAAACCTTTAGAGTGGAATGCTCTTCTTACTGTTATTTTATGTAAAATGGAGAGTCCACAAACTGGTAGCACATTTTTCTACTTTTCAAAACCATAAATTTTCTGCTGATATTCCCGCTACAAAAGACTCAGACAGCCTACTGAGGCTCAGATGATTGATTGATATTGTCTACATTGTCAAAACAGTATTTCATCGAGTTCGGCGTCTCTCTTTCTTTTGATGTTCTTTTATCAGGTAAATTGGTGCATCATAGTTGTATTTTGTTTTTTCTAGATTTTGGTTTGCTATGTTGTGTAAAAGATTTTCCAAACTGTGTTTTCTGATAATTTCTCATTATTTGTGCTTTAATGTGAAATATGTTTGCATTGTTGGTGTTTGATAATTGCTCAGTATTTGTGCTTTAATGTGAACAGATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGGGTAGGACTCTAGCTATTTTCATAGTTATTTCATCATAGAAACCCAATTGACTGGCAATAATAATTTCTTTGAGTTTCAGTTAATCCCTTTGTTGGTTGAACTTTAGGTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAGGTATGCACCTTCCTGTTGTATTTATTTCCTGGAGACCTCTGTCCCCTTTAATAACTGTTATGAGAGTGAAAGAGGTATTTGTTTTTTTGACAATATATAATTTTATATGGCTTTGCAGCAACTATG</genome_strand>
        <mrna_strand>TTCTGAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG..........................................................................................................GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTATGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG......................................................................................................................CAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E289481" ref_strand="+" ref_description="SGN-E289481 [cLET-3-P22]">
      <seq>tctcatatattttgctaattgctcataattaatggattcttttgaagaggcatcaattgacatgaaaatggaaatatttgatgcaattgaagataattatggtggagttattgtgaatatgaagaaagaggagtctatggattttcttaaatttcatactatgcttaaggcttccatttctcattggaggataaagggaaagaagggcgtttggattaagttacctatagaacttgctcatcttgttgatgcagcaccaaaggaaggattttggtatcatcatgcacaggcaacatattcgatgcttgtttattggattcctcatgaaattcctcatacttttcctgctaatgcttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="92396" stop="95071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92696" g_stop="92716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92717" i_stop="93527" i_length="811">
            <donor d_prob="0.876" d_score="0.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93702" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="196" r_length="175" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93703" i_stop="94499" i_length="797">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94500" g_stop="94565" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="262" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94566" i_stop="94673" i_length="108">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94674" g_stop="94771" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="360" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E289481" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92696" e_stop="92716"/>
          <exon e_start="93528" e_stop="93702"/>
          <exon e_start="94500" e_stop="94565"/>
          <exon e_start="94674" e_stop="94771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATATATTTTGCTAATTGGTACGTTAAATTATTATCACTTTGATTAATTAGCTTAACAAAAACTTATTTCCCAGTTGCATATAACTTAAAATAGTTTCAAGTATTTTGCAAATATATACTTATGAAAGTTTGTAATTTTTATTTATTTTCTCTACTGATTTGCATATGCGTCTCCACGTGTCATTTGATCAGCTCATTAAAATTTTCATAATAAATCATATCCAATTTTACCATATACTCCGAGGTACTAGACCATATTATTATCGTCGTTTCATTTTATATATGTTACAATCTTTAATCCGTTAAGCAAAATTTTTATATTTAAAAATAATTTAATTTTAAATGGTCATTTTATTATTAATAGCAAGATATCCACCAAAATCTTATAGTATGTTAAAAATATATAAATTTAGAAAATCTTCTTTACCTTTTTGGTTGTGTGTATGATAAATTTCGAATTAGATTTTATAAAGTTTAAATTCTGAATCTCGTATATCAAAAATATAATAATTTTAAAGATCATCTTACTTTTTTGGATATGCATGATAAATTTCGAATTAAATTTTATAAAAAAATTTAAATCTGTCTCTAAATATCATCGAGTACGATTTAAGCTATAGCTTATTTTACAATATATTTATTGCTCTTGGAAATATTCTTTAAAACTGAGTCTAACCTAAAAAGTAGTGAGGGGCATGCAACGAATTTGATTGTATATATCTTTACTATTTTTTTTAAAAGAAAAATATTATATTTAATTATGATTAGCATTTAATTAAATAATTCAGATTTCTTTTCCTAATTATGTTTTCTTTTGTTGTTTGAAAAGCTCATAATTAATGGATTCTTTTGAAGAGGCATCAATTGACATGAAAATGGAAATATTTGAGGCAATTGAAGATAATTATGGTGGAGTTATTGTGAATATGAAGAAAGAGGAGTCTATGGATTTTCTTAAATTTCATACTATGCTCAAGGCTTCCATTTCTCATTGGAGGATAAAGGTATATATCTATATATATTTGATATTTACTCGATCGTAATATTTGAGTTTAAGTTATATGTATTGTTTGATAAATATATTTACTTATATTAAAATCACACAAAGGTAATTGCAGATAAGAGAAAAATTTTATATAATAGCAAATTATTAATTCAAATTAAATGTTATAAATATAGTTTACTGTTGCTATTTTCGCCTCTCTCCCTGATGGATCTCACTTGCCACTTGACAATCTCTCGCTTTTATATAAACACAAATGTATAAAATCCGTTTGTGTTATAAAGTGAGATAAAATTTTATATATAAATATGTTTTCGTTCCCCTATCTAATTTCGCTTGCCACTCTCACTCATCTCTCTCACTTTATACAAACACAAATATATATATACATTGAGTTTGTGTTTGTATAAAGAGAGAGAAAATTTAAATATACAAATACAAATGCATATATTTTCGTCCAATACACTTATTATAATACAACTACGATCTTCTCCTGTCCAATTTTCTTTTGTCTTTCTCTCTTTCTCGCTTTATATAAACACATGTTATAGAATTAATTCTTTCGTATATGTATACCGAAACAGATTATACAATTATTTTTTTTGTATATGTGTATAGCGAAATAGCCACAACCTTTTGTATATATATATAGCGAAACAACTACAACCTTTCGTATACATGTATAGCGAAATAGCATAACATAACAAATTAAATTATATTACCGACCAGTCATCGTTAACAAAAATCTCACTAATTTTAATTTATTTTTGTTATTTTTCCTTTGATTTTGATGGTCAGGGAAAGAAGGGTGTTTGGATTAAGTTACCTATAGAACTTGCTCATCTTGTTGATGCAGCAGTAAAGGTATAATTTTATTTCATGAAAATAACTAATAATTTATTATTAACATTAGATTATTTTAAATTCATACAAATATATGCTTAATTAATATGATAAATTAAATAAATGTAGGAGGGATTTTGGTATCATCATGCAGAGGCAACATATTTGATGCTTGTTTATTGGATTCCTCATGAAATTCCTCATACTTTTCCTGCTAATGCTTCTCA</genome_strand>
        <mrna_strand>TCTCATATATTTTGCTAATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATAATTAATGGATTCTTTTGAAGAGGCATCAATTGACATGAAAATGGAAATATTTGATGCAATTGAAGATAATTATGGTGGAGTTATTGTGAATATGAAGAAAGAGGAGTCTATGGATTTTCTTAAATTTCATACTATGCTTAAGGCTTCCATTTCTCATTGGAGGATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAAGGGCGTTTGGATTAAGTTACCTATAGAACTTGCTCATCTTGTTGATGCAGCACCAAAG............................................................................................................GAAGGATTTTGGTATCATCATGCACAGGCAACATATTCGATGCTTGTTTATTGGATTCCTCATGAAATTCCTCATACTTTTCCTGCTAATGCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="99263" stop="100007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99415" g_stop="99566" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99415" e_stop="99566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAT-TGTATGTATATTACATAATTATAAGCGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E368811" ref_strand="+" ref_description="SGN-E368811 [TUS-26-I11]">
      <seq>tttttttttaaattgtagcacaactaaaaatgtataattaagtacaaaatctaacagcatcgttaggaaggtaaaaaagataaatttaaatatttgaaaattacaagctacaaaactggtggcagatttacaacagaaacagaacccttttcattttgctctgtaagaatccacctcaacccatgcaaggcatctcacaaggctttggttaaatcaaaaatcttcacagctgctgcaatatcacgcagctcttctattgaaaccttcttccacacaccatcaatcatcaggtggccttttgaaccttccaaaggcacgtcgttatggccatttccaatctccatattctctgtgtactgattatcaccaggctcctctgtcttcctcattttctttggattcaagcattcattcgcagaagcagcctcccgcttgcatccacatttattggtttctgggatttcattgtctgatgattttgcaacttctgctgaatcatcaacaaaatcaagaattggaagacgaccagtagaaccaaatgcatggggcagcataccaatggggcatgctttccatgtttttgcaactacccattggctcccggtatctgttgtgttcatcttattgccctttacaactcgacgcataattagctcaagcttctgagcagctttgcgaagagaatcttcttccctggatagtaggaagctttctgaattattggtagaaggatctgagtgaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="108460" stop="109800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108756" g_stop="109500" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E368811" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108756" e_stop="109500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATTTAAATTGTAGCACAACTAAAAATGTATAATTAAGTACAAAATTTAACAGCATCGTTAGGAAGGTAAAAAAGATAAATTTAAATATTTGAAAATTACAAGCTACAAAACTGGTGGCAGATTTACAACAGAAACAGAACCCTTTTCATTTTGCTCTGTAAGAATCCACCTCAACCCATGCAAGGCATCTCACAAGGCTTTGGTTAAATCAAAAATCTTCACAGCTGCTGCAATATCACGCAGCTCTTCTATTGAAACCTTCTTCCACACACCATCAATCATCAGGTGGCCTTTTGAACCTTCCAAAGGCACGTCGTTATGGCCATTTCCAATCTCCATATTCTCTGTGTACTGATTATCACCAGGCTCCTCTGTCTTCCTCATTTTCTTTGGATTCAAGCATTCATTCGCAGAAGCAGCCTCCCGCTTGCATCCACATTTATTGGTTTCTGGGATTTCATTGTCTGATGATTTTGCAACTTCTGCTGAATCATCAACAAAATCAAGAATTGGAAGACGACCAGTAGAACCAAATGCATGGGGCAGCATACCAATGGGGCATGCTTTCCATGTTTTTGCAACTACCCATTGGCTCCCGGTATCTGTTGTGTTCATCTTATTGCCCTTTACAACTCGACGCATAATTAGCTCAAGCTTCTGAGCAGCTTTGCGAAGAGAATCTTCTTCCCTGGATAGTAGGAAGCTTTCTGAATTATTGGTAGAAGGATCTGAGTGAATAA</genome_strand>
        <mrna_strand>TTTTTTTTTAAATTGTAGCACAACTAAAAATGTATAATTAAGTACAAAATCTAACAGCATCGTTAGGAAGGTAAAAAAGATAAATTTAAATATTTGAAAATTACAAGCTACAAAACTGGTGGCAGATTTACAACAGAAACAGAACCCTTTTCATTTTGCTCTGTAAGAATCCACCTCAACCCATGCAAGGCATCTCACAAGGCTTTGGTTAAATCAAAAATCTTCACAGCTGCTGCAATATCACGCAGCTCTTCTATTGAAACCTTCTTCCACACACCATCAATCATCAGGTGGCCTTTTGAACCTTCCAAAGGCACGTCGTTATGGCCATTTCCAATCTCCATATTCTCTGTGTACTGATTATCACCAGGCTCCTCTGTCTTCCTCATTTTCTTTGGATTCAAGCATTCATTCGCAGAAGCAGCCTCCCGCTTGCATCCACATTTATTGGTTTCTGGGATTTCATTGTCTGATGATTTTGCAACTTCTGCTGAATCATCAACAAAATCAAGAATTGGAAGACGACCAGTAGAACCAAATGCATGGGGCAGCATACCAATGGGGCATGCTTTCCATGTTTTTGCAACTACCCATTGGCTCCCGGTATCTGTTGTGTTCATCTTATTGCCCTTTACAACTCGACGCATAATTAGCTCAAGCTTCTGAGCAGCTTTGCGAAGAGAATCTTCTTCCCTGGATAGTAGGAAGCTTTCTGAATTATTGGTAGAAGGATCTGAGTGAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E368812" ref_strand="+" ref_description="SGN-E368812 [TUS-26-I11]">
      <seq>cacaatccatgaaactgttgacatgcacagtgcatacgatgactggaaaccaatcctgaagaaattgtcaaatagagaacccgatttgcttctgactcttctcagggcagctctagacaagattgagactatgggagcctcaaagcatcagcttggtgcaaatgaatctcttttgattggacaattatcttacctgtgtgaacaaatagttgcaaacctgaagacactaaagcctcttaacaataatgatcttgctgctgacggggaagactcttcaagaaaacttagtcttccagaggcaacgctacaagaactattacataaatgtttattcttgtcctctaacaacaacaatcagctgatgaaatccggtcttgttattgctcagatgattggaaggaactctttcatcgataagttaaataagctctgttcactgagtgtatttgattcagagattattcactcagatccttctaccaataattcagaaagcttcctactatccagggaagaagattctcttcgcaaagctgctcagaagcttgagctaattatgcgtcgagttgtaaagggcaataagatgaacacaacagataccgggagccaatgggtagttgcaaaaacatggaaagcatgccccattggtatgctgccccatgcatttggttctactggtcgtcttccaatttttgattttgttgatgattcagcagaagttgcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="110949" stop="108931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110649" g_stop="110495" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110494" i_stop="109804" i_length="691">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109803" g_stop="109231" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="728" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E368812" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110649" e_stop="110495"/>
          <exon e_start="109803" e_stop="109231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTGGTAAGTGATGTATTCTGGCATTCCTTTACTTGGATGATTTTCTTGTGCTTGGTATTGTCGGAGTATCATGAATGCCTCTGTTGAAGATACATATATACTATATGAGACTGGAAACACGCAGATAGCTGTTATTCCTGTTCTTATGAGCAACTGGTTAATTTGGGACATTGCTAAAATGGCTACTGGGAGTTAAATAAGAATTTATGCCATGGATGCTGAAAATTTCAACTGCTCGTTAGTGTTTTATTAAGCGAGTGCTGAATTGTATCCTTGTTTGCGGGGGTTTCTTTCTTTCACAGATGTTGGAATGCAGCTTGCGGATTATCATTTATCACATACTATTTTGCTAGCTATTGTGTAACGATATTATTGTCATATTACAGTATTTGTTATGTCCAGTTTATCTAACAAGGGGAGGCACAAAAACATGAAAAAAAATTGTCTAGCTTAACTTACTGGGAGGATTTGCTCAGTCTACAGTAGTGTAAACTGCTCTTCAAACCCTGCTGTTTTCGTTTTACATATGTTTCATTCTTTAACTTTTTTTCCAAATCCACACCTGTATATGTGTGCCATCTTTTTGTGATGTTTCTCTCAGTTATATGATTTTCATTTGCTTCATGTAGTCGAATAGGTTTTAGCTTAATTTCCTGTTCATCATTGACTCATTTCTTCTACGGATTATTGTCAGGTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGACGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTACATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAAATCCGGTCTTGTTATTGCTCAGATGATTGGAAGGAACTCTTTCATCGATAAGTTAAATAAGCTCTGTTCACTGAGTGTATTTGATTCAGAGATTATTCACTCAGATCCTTCTACCAATAATTCAGAAAGCTTCCTACTATCCAGGGAAGAAGATTCTCTTCGCAAAGCTGCTCAGAAGCTTGAGCTAATTATGCGTCGAGTTGTAAAGGGCAATAAGATGAACACAACAGATACCGGGAGCCAATGGGTAGTTGCAAAAACATGGAAAGCATGCCCCATTGGTATGCTGCCCCATGCATTTGGTTCTACTGGTCGTCTTCCAATTCTTGATTTTGTTGATGATTCAGCAGAAGTTGCAAAAT</genome_strand>
        <mrna_strand>CACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGACGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTACATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAAATCCGGTCTTGTTATTGCTCAGATGATTGGAAGGAACTCTTTCATCGATAAGTTAAATAAGCTCTGTTCACTGAGTGTATTTGATTCAGAGATTATTCACTCAGATCCTTCTACCAATAATTCAGAAAGCTTCCTACTATCCAGGGAAGAAGATTCTCTTCGCAAAGCTGCTCAGAAGCTTGAGCTAATTATGCGTCGAGTTGTAAAGGGCAATAAGATGAACACAACAGATACCGGGAGCCAATGGGTAGTTGCAAAAACATGGAAAGCATGCCCCATTGGTATGCTGCCCCATGCATTTGGTTCTACTGGTCGTCTTCCAATTTTTGATTTTGTTGATGATTCAGCAGAAGTTGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E259641" ref_strand="+" ref_description="SGN-E259641 [cLEG-42-A2]">
      <seq>atgactggaaaccaatcctgaagaaattgtcaaatagagaacccgatttgcttctgactcttctcagggcagctctagacaagattgagactatgggagcctcaaagcatcagcttggtgcaaatgaatctcttttgattggacaattatcttacctgtgtgaacaaatagttgccaaaccctgaagaaactaaagcctcttaaccaataatgatcttgctgctgaccggggaagactcttcaagaaaacttagtcttccagaggccacgctccaagaactattaccataaatgtttattcttgtcctctaacaacaacaatcagctgatgaaatccggtcttgttattgctcagatgattggaaggaactctttcatcgataagttaaataagctctgttcactgagtgtatttgattcagagattattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="110911" stop="109192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110611" g_stop="110495" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110494" i_stop="109804" i_length="691">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109803" g_stop="109492" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="434" r_length="317" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E259641" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110611" e_stop="110495"/>
          <exon e_start="109803" e_stop="109492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTGGTAAGTGATGTATTCTGGCATTCCTTTACTTGGATGATTTTCTTGTGCTTGGTATTGTCGGAGTATCATGAATGCCTCTGTTGAAGATACATATATACTATATGAGACTGGAAACACGCAGATAGCTGTTATTCCTGTTCTTATGAGCAACTGGTTAATTTGGGACATTGCTAAAATGGCTACTGGGAGTTAAATAAGAATTTATGCCATGGATGCTGAAAATTTCAACTGCTCGTTAGTGTTTTATTAAGCGAGTGCTGAATTGTATCCTTGTTTGCGGGGGTTTCTTTCTTTCACAGATGTTGGAATGCAGCTTGCGGATTATCATTTATCACATACTATTTTGCTAGCTATTGTGTAACGATATTATTGTCATATTACAGTATTTGTTATGTCCAGTTTATCTAACAAGGGGAGGCACAAAAACATGAAAAAAAATTGTCTAGCTTAACTTACTGGGAGGATTTGCTCAGTCTACAGTAGTGTAAACTGCTCTTCAAACCCTGCTGTTTTCGTTTTACATATGTTTCATTCTTTAACTTTTTTTCCAAATCCACACCTGTATATGTGTGCCATCTTTTTGTGATGTTTCTCTCAGTTATATGATTTTCATTTGCTTCATGTAGTCGAATAGGTTTTAGCTTAATTTCCTGTTCATCATTGACTCATTTCTTCTACGGATTATTGTCAGGTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTG-CAAA-CCTGAAGACACTAAAGCCTCTTAA-CAATAATGATCTTGCTGCTGA-CGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTA-CATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAAATCCGGTCTTGTTATTGCTCAGATGATTGGAAGGAACTCTTTCATCGATAAGTTAAATAAGCTCTGTTCACTGAGTGTATTTGATTCAGAGATTATTCACT</genome_strand>
        <mrna_strand>ATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCCAAACCCTGAAGAAACTAAAGCCTCTTAACCAATAATGATCTTGCTGCTGACCGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCCACGCTCCAAGAACTATTACCATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAAATCCGGTCTTGTTATTGCTCAGATGATTGGAAGGAACTCTTTCATCGATAAGTTAAATAAGCTCTGTTCACTGAGTGTATTTGATTCAGAGATTATTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E247303" ref_strand="+" ref_description="SGN-E247303 [cLEF-46-O8]">
      <seq>caccatattctaaatcttctggttctaagaaacagattactagagctatgaaggccattctgcgattgtatacttcctcatcttcagaagtggcatctgtgcttttggaacttatgctgcagtcagtagattccttaaattttccaggggactcagagaatgcccccacaatccatgaaactgttgacatgcacagtgcatacgatgactggaaaccaatcctgaagaaattgtcaaatagagaacccgatttgcttctgactcttctcagggcagctctagacaagattgagactatgggagcctcaaagcatcagcttggtgcaaatgaatctcttttgattggacaattatcttacctgtgtgaacaaatagttgcaaacctgaagacactaaagcctcttaacaataatgatcttgctgctgacggggaagactcttcaagaaaacttagtcttccagaggcaacgctacaagaactattacataaatgtttattcttgtcctctaacaacaacaatcagctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="111820" stop="109293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111520" g_stop="111500" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111499" i_stop="110795" i_length="705">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.496" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110794" g_stop="110495" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="321" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110494" i_stop="109804" i_length="691">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109803" g_stop="109593" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="532" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E247303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111520" e_stop="111500"/>
          <exon e_start="110794" e_stop="110495"/>
          <exon e_start="109803" e_stop="109593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATATTCTAAATCTTCTGGTAATTCTATTCAGCCTCAGATCTGTAACCTCATGATTCATTGGCAGTGTTCCTGCATCTACTTTATGAGCTTCTTTTGACCATCTTCTGCATATGAAAGTATTGGCACTTGACACTGATTTGCTATATCCACCTTAATGACCTGCAACAAGTTATTGAATAATGAGCATTAAAACATTATGACTATTAAAGCATCAGTAGCATATCAAATATATGCACCGATAATATTAGCATGTTAGTTCATTTATAAAACGGAAAAAACATCAGCATCTTAGTTCAATGAAAGAGTGAGATGAACTAGTGTATCCTTTGGGATTTACAAGTGTTCACACGGCAGATTCAGGGCTGTTCGGTCATCAGCTGCAATCATTTGGGATTTTTTAAGGTTTCATAAACTGTTCATTCAGCATCTTTTCTATTTGTTTATTTTCTTATAATTCTGTCTAGAGTCTAGTGTCAAAAAAATATATATTCTGTCTAGAGTCTAAATCTGACATTGACATTGACTTGGTAATTAGTTAATTAGGGTATAGAGTTACTTTCTGTGAAGTCGTGTATGATTTCTTAATTCATGAAGGTGTTTCATACTGGATTTTGCTTTTTGAAGGGTATATATTGTCTGTGACACTGTGTTCCAAAGTGCTTTATTATCAGCATATCTGGAATGCTGAATGTCCTGAGTTTTTCCAGAACAATTTGTCTCAGGTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTGGTAAGTGATGTATTCTGGCATTCCTTTACTTGGATGATTTTCTTGTGCTTGGTATTGTCGGAGTATCATGAATGCCTCTGTTGAAGATACATATATACTATATGAGACTGGAAACACGCAGATAGCTGTTATTCCTGTTCTTATGAGCAACTGGTTAATTTGGGACATTGCTAAAATGGCTACTGGGAGTTAAATAAGAATTTATGCCATGGATGCTGAAAATTTCAACTGCTCGTTAGTGTTTTATTAAGCGAGTGCTGAATTGTATCCTTGTTTGCGGGGGTTTCTTTCTTTCACAGATGTTGGAATGCAGCTTGCGGATTATCATTTATCACATACTATTTTGCTAGCTATTGTGTAACGATATTATTGTCATATTACAGTATTTGTTATGTCCAGTTTATCTAACAAGGGGAGGCACAAAAACATGAAAAAAAATTGTCTAGCTTAACTTACTGGGAGGATTTGCTCAGTCTACAGTAGTGTAAACTGCTCTTCAAACCCTGCTGTTTTCGTTTTACATATGTTTCATTCTTTAACTTTTTTTCCAAATCCACACCTGTATATGTGTGCCATCTTTTTGTGATGTTTCTCTCAGTTATATGATTTTCATTTGCTTCATGTAGTCGAATAGGTTTTAGCTTAATTTCCTGTTCATCATTGACTCATTTCTTCTACGGATTATTGTCAGGTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGACGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTACATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAA</genome_strand>
        <mrna_strand>CACCATATTCTAAATCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGACGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTACATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E260513" ref_strand="+" ref_description="SGN-E260513 [cLEG-54-E6]">
      <seq>ctgattgatgttcgccatgagggctctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaaggcacttgactggttgaaatcatattattgggaacctcaaaagaatgtaattcgaagggattcaactgtcaacctgaggaatgaaattaaacataaactgctagagatggctttctgtttgaaagtgaagcagactaacagttcacatactttgggaaaacgaatgagacttgggcaactttgtgctagaaacaagtttctccctttcatttctgggaatccaccatattctaaatcttctggttctaagaaacagattactagagctatgaaggccattctgcgattgtatacttcctcatcttcagaagtggcatctgtgcttttggaacttatgctgcagtcagtagattccttaaattttccaggggactcagagaatgcccccacaatccatgaaactgttgacatgcacagtgcatacgatgactggaaaccaatcctgaagaaattgtcaaatagagaacccgatttgcttctgactcttctcagggcagctctagacaagattgagactatgggagcctcaaagcatcagcttggtgcaaatgaatctcttttgattggacaattatcttacctgtgtgaacaaatagttgcaaacctgaagacactaaagcctcttaacaataatgatcttgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="115433" stop="109398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="75" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="235" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111580" g_stop="111500" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="316" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111499" i_stop="110795" i_length="705">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.496" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110794" g_stop="110495" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="616" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110494" i_stop="109804" i_length="691">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109803" g_stop="109698" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="722" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E260513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111500"/>
          <exon e_start="110794" e_stop="110495"/>
          <exon e_start="109803" e_stop="109698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTGGTAATTCTATTCAGCCTCAGATCTGTAACCTCATGATTCATTGGCAGTGTTCCTGCATCTACTTTATGAGCTTCTTTTGACCATCTTCTGCATATGAAAGTATTGGCACTTGACACTGATTTGCTATATCCACCTTAATGACCTGCAACAAGTTATTGAATAATGAGCATTAAAACATTATGACTATTAAAGCATCAGTAGCATATCAAATATATGCACCGATAATATTAGCATGTTAGTTCATTTATAAAACGGAAAAAACATCAGCATCTTAGTTCAATGAAAGAGTGAGATGAACTAGTGTATCCTTTGGGATTTACAAGTGTTCACACGGCAGATTCAGGGCTGTTCGGTCATCAGCTGCAATCATTTGGGATTTTTTAAGGTTTCATAAACTGTTCATTCAGCATCTTTTCTATTTGTTTATTTTCTTATAATTCTGTCTAGAGTCTAGTGTCAAAAAAATATATATTCTGTCTAGAGTCTAAATCTGACATTGACATTGACTTGGTAATTAGTTAATTAGGGTATAGAGTTACTTTCTGTGAAGTCGTGTATGATTTCTTAATTCATGAAGGTGTTTCATACTGGATTTTGCTTTTTGAAGGGTATATATTGTCTGTGACACTGTGTTCCAAAGTGCTTTATTATCAGCATATCTGGAATGCTGAATGTCCTGAGTTTTTCCAGAACAATTTGTCTCAGGTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTGGTAAGTGATGTATTCTGGCATTCCTTTACTTGGATGATTTTCTTGTGCTTGGTATTGTCGGAGTATCATGAATGCCTCTGTTGAAGATACATATATACTATATGAGACTGGAAACACGCAGATAGCTGTTATTCCTGTTCTTATGAGCAACTGGTTAATTTGGGACATTGCTAAAATGGCTACTGGGAGTTAAATAAGAATTTATGCCATGGATGCTGAAAATTTCAACTGCTCGTTAGTGTTTTATTAAGCGAGTGCTGAATTGTATCCTTGTTTGCGGGGGTTTCTTTCTTTCACAGATGTTGGAATGCAGCTTGCGGATTATCATTTATCACATACTATTTTGCTAGCTATTGTGTAACGATATTATTGTCATATTACAGTATTTGTTATGTCCAGTTTATCTAACAAGGGGAGGCACAAAAACATGAAAAAAAATTGTCTAGCTTAACTTACTGGGAGGATTTGCTCAGTCTACAGTAGTGTAAACTGCTCTTCAAACCCTGCTGTTTTCGTTTTACATATGTTTCATTCTTTAACTTTTTTTCCAAATCCACACCTGTATATGTGTGCCATCTTTTTGTGATGTTTCTCTCAGTTATATGATTTTCATTTGCTTCATGTAGTCGAATAGGTTTTAGCTTAATTTCCTGTTCATCATTGACTCATTTCTTCTACGGATTATTGTCAGGTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGA</genome_strand>
        <mrna_strand>AGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E271088" ref_strand="+" ref_description="SGN-E271088 [cLEM-22-I15]">
      <seq>ttgcctctaccaaggcacttgactggttgaaatcatattattgggaacctcaaaagaatgtaattcgaagggattcaactgtcaacctgaggaatgaaattaaacataaactgctagagatggctttctgtttgaaagtgaagcagactaacagttcacatactttgggaaaacgaatgagacttgggcaactttgtgctagaaacaagtttctccctttcatttctgggaatccaccatattctaaatcttctggttctaagaaacagattactagagctatgaaggccattctgcgattgtatacttcctcatcttcagaagtggcatctgtgcttttggaacttatgctgcagtcagtagattccttaaattttccaggggactcagagaatgcccccacaatccatgaaactgttgacatgcacagtgcatacgatgactggaaaccaatcctgaagaaattgtcaaatagagaacccgatttgcttctgactcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="114194" stop="110247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="174" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111500" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="255" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111499" i_stop="110795" i_length="705">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.496" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110794" g_stop="110547" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="503" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E271088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111500"/>
          <exon e_start="110794" e_stop="110547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTGGTAATTCTATTCAGCCTCAGATCTGTAACCTCATGATTCATTGGCAGTGTTCCTGCATCTACTTTATGAGCTTCTTTTGACCATCTTCTGCATATGAAAGTATTGGCACTTGACACTGATTTGCTATATCCACCTTAATGACCTGCAACAAGTTATTGAATAATGAGCATTAAAACATTATGACTATTAAAGCATCAGTAGCATATCAAATATATGCACCGATAATATTAGCATGTTAGTTCATTTATAAAACGGAAAAAACATCAGCATCTTAGTTCAATGAAAGAGTGAGATGAACTAGTGTATCCTTTGGGATTTACAAGTGTTCACACGGCAGATTCAGGGCTGTTCGGTCATCAGCTGCAATCATTTGGGATTTTTTAAGGTTTCATAAACTGTTCATTCAGCATCTTTTCTATTTGTTTATTTTCTTATAATTCTGTCTAGAGTCTAGTGTCAAAAAAATATATATTCTGTCTAGAGTCTAAATCTGACATTGACATTGACTTGGTAATTAGTTAATTAGGGTATAGAGTTACTTTCTGTGAAGTCGTGTATGATTTCTTAATTCATGAAGGTGTTTCATACTGGATTTTGCTTTTTGAAGGGTATATATTGTCTGTGACACTGTGTTCCAAAGTGCTTTATTATCAGCATATCTGGAATGCTGAATGTCCTGAGTTTTTCCAGAACAATTTGTCTCAGGTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTC</genome_strand>
        <mrna_strand>GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E447855" ref_strand="+" ref_description="SGN-E447855 [cSTS-4-A1]">
      <seq>ctacaatggagtctctgttagggtttatcgaaccatctgctgacgaaactgtggaaggcaactctctagctctcaaattggtgccatggataagctgggatgaatggaactctattcgagattcccttttctcttcttctcctcaatctgttgcttttgctcttcaaaggatatcgacctggaggagcagaggatgcattcctgtcgcagtggatgttacggcttcaattatagagattcaacagaaagatccttttttcaggaaggacctaggtggaaatgctctgcagtcagaagaaatgctttcaatgctatattgtatggcaattatgaggcttgtaaatggtgttgttgagaagactcgaaagaaggccgaaatttcgatagctgaggcagcaaatgctattggcattccacgcatgctgattgatgttcgccatgaggggtctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaaggcgcttgactggttgaaatcatattattgggaacctcaaaagaatgtgattcgaagggattcaactgccaacctgaggaaagaaattaaacataaactgctagagatggctttctgcttgaaagtgaagcagactaacagttcacatacttcgggaaaacgaatgagacttgggcaactttgtgctagaaacaagtttctccctttcatttctgggcatctaccatattctaaaacttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116840" stop="111200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116540" g_stop="116371" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="116199" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="262" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142">
            <donor d_prob="0.550" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116056" g_stop="115985" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="334" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115555" g_stop="115449" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="441" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="497" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="657" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111580" g_stop="111500" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="738" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E447855" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116540" e_stop="116371"/>
          <exon e_start="116290" e_stop="116199"/>
          <exon e_start="116056" e_stop="115985"/>
          <exon e_start="115555" e_stop="115449"/>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGAGTCTCTACTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGGGTAACATCCAATACAAAGACTTTTTTTTTTCTTCCTTCCGATAAAACTGAATGGATACTTATTATTTTTTTGGATATTAGATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAGGTGATCCTTCATTGATTTTTTGTTTGTTTGTAGATAATCAAAGGGTATTCAATTGTTTATTAATTTGCAATGTCGATTTATCCTTTCTGTTTTTCACTTGGGCTTGTTAATGTGAACCTTTTTCTTTGCTATTCTTTTGCAGGAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAGGTACTTTTTATTTACTACTTGCTTTTTCTTGTTTCGAAATCTCCCTCCATTTGTATGGCTTATGAGAATGACTTTTTTTCCACTTAAGTTGTATTACTTGTGTTAATACAACTCACCATCAATAAGTTATGATGCTATTTACTCTATAATATCTTCTAATTTTTCATTCCATATAGTAGAAAAAAAGACTCAATTAGTGTTGTTATCTGCAGCTTCCTTGTTGCTGCAGATCTTCTATAGTTTGAGCATGTGATGCTTCTCCCAGTGTCCTTGATAGTGTTATTTAATTTAATATGAAAATACAATTGGATGAACACTGAGACTGTTACTATGATTTAAATGGTGGAACTTTAGGATAGTAGCTGTGTGTGGATGAGTTTGTATTTATAGCAACCAAAATCAGTATAATAATGGTAACTACTTTTCCAGGCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATGGTTAGTGTTGATGTGTATTTGCAACTTTGATATGAAAGTTGTTGATTGTTAAAAGTAAGTCATCTATACATAGTATTGACCAGAGTAAATTTCTGTTACTGCCTTTGTGAGTGAGTAACCAAGTAAGATAGCTATCAAGATGGCACTTTATGTTCTGAATCTGTTGTAGGCTTTAAAAAACCGAGAAGCTTATGCCGTGTGTTGCTTAATTTTTGCATCAGTTAACAATGTTTGTCTTGCTACGACTTATGATTTTGTAACTGAATTCTAATGTGAAGAAGCTGATTTATTAACATTGGTTAATATTTCCTTGTAGAGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTG</genome_strand>
        <mrna_strand>CTACAATGGAGTCTCTGTTAGGGTTTATCGAACCATCTGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGG................................................................................ATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACGGCTTCAATTATAGAGATTCAACAGAAAGATCCTTTTTTCAG..............................................................................................................................................GAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTAAATGGTGTTGTTGAGAAGACTCGAAAGAAGGCCGAAATTTCGATAGCTGAGGCAGCAAATGCTATTGGCATTCCACGCATGCTGATTGATGTTCGCCATG............................................................................................................................................................................................................................................................................................................................AGGGGTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTGATTCGAAGGGATTCAACTGCCAACCTGAGGAAAGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGCTTGAAAGTGAAGCAGACTAACAGTTCACATACTTCGGGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGCATCTACCATATTCTAAAACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E315261" ref_strand="+" ref_description="SGN-E315261 [cTOA-24-E4]">
      <seq>tttatcgaaccatcagctgacgaaactgtggaaggcaactctctagctctcaaattggtgccatggataagctgggatgaatggaactctattcgagattcccttttctcttcttctcctcaatctgttgcttttgctcttcaaaggatatcgacctggaggagcagaggatgcattcctgtcgcagtggatgttacagcttcaattatagaaattcaacagaaagattccttttttaggaaggacctaggtggaaatgctctgcagtcagaagaaatgctttcaatgctatattgtatggcaattatgaggcttgtaaatggtgttgttgagaagacccgaaagaaggcagaaatttcgatagctgaggctgcaaatgctattggcattccgcgtatgctgattgatgttcgccatgagggctctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaaggcacttgactggttgaaatcatattattgggaacctcaaaagaatgtaattcgaagggattcaactgtcaacctgaggaatgaaattaaacataaactgctagagatggctttctgtttgaaagtgaagcagactaacagttcacatactttggggaaacgaatgagacttgggcaactttgtgctagaaacaagtttctccctttcatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116817" stop="111227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116517" g_stop="116371" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="116199" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="239" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116056" g_stop="115985" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="311" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115555" g_stop="115449" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="418" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="474" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="634" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111580" g_stop="111527" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="688" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E315261" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116517" e_stop="116371"/>
          <exon e_start="116290" e_stop="116199"/>
          <exon e_start="116056" e_stop="115985"/>
          <exon e_start="115555" e_stop="115449"/>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGGGTAACATCCAATACAAAGACTTTTTTTTTTCTTCCTTCCGATAAAACTGAATGGATACTTATTATTTTTTTGGATATTAGATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAGGTGATCCTTCATTGATTTTTTGTTTGTTTGTAGATAATCAAAGGGTATTCAATTGTTTATTAATTTGCAATGTCGATTTATCCTTTCTGTTTTTCACTTGGGCTTGTTAATGTGAACCTTTTTCTTTGCTATTCTTTTGCAGGAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAGGTACTTTTTATTTACTACTTGCTTTTTCTTGTTTCGAAATCTCCCTCCATTTGTATGGCTTATGAGAATGACTTTTTTTCCACTTAAGTTGTATTACTTGTGTTAATACAACTCACCATCAATAAGTTATGATGCTATTTACTCTATAATATCTTCTAATTTTTCATTCCATATAGTAGAAAAAAAGACTCAATTAGTGTTGTTATCTGCAGCTTCCTTGTTGCTGCAGATCTTCTATAGTTTGAGCATGTGATGCTTCTCCCAGTGTCCTTGATAGTGTTATTTAATTTAATATGAAAATACAATTGGATGAACACTGAGACTGTTACTATGATTTAAATGGTGGAACTTTAGGATAGTAGCTGTGTGTGGATGAGTTTGTATTTATAGCAACCAAAATCAGTATAATAATGGTAACTACTTTTCCAGGCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATGGTTAGTGTTGATGTGTATTTGCAACTTTGATATGAAAGTTGTTGATTGTTAAAAGTAAGTCATCTATACATAGTATTGACCAGAGTAAATTTCTGTTACTGCCTTTGTGAGTGAGTAACCAAGTAAGATAGCTATCAAGATGGCACTTTATGTTCTGAATCTGTTGTAGGCTTTAAAAAACCGAGAAGCTTATGCCGTGTGTTGCTTAATTTTTGCATCAGTTAACAATGTTTGTCTTGCTACGACTTATGATTTTGTAACTGAATTCTAATGTGAAGAAGCTGATTTATTAACATTGGTTAATATTTCCTTGTAGAGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTG</genome_strand>
        <mrna_strand>TTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGG................................................................................ATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAG..............................................................................................................................................GAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATG............................................................................................................................................................................................................................................................................................................................AGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGGAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E415504" ref_strand="+" ref_description="SGN-E415504 [STM-21-O4]">
      <seq>tgttgcttttgctcttcaaagggacatcgacctggaggagcagaggaatgcattcctgtcgcagtggaagttaccggcttcaattatagagaattcaacagaaaagatcctttttttcaggaaaggatctaggtggaaatgcctctgcagtcagaagaaatgcctttcaatgctatattgtatggcaattatgaaggcttgtaaatggtgttgttgagaagacccgaaagaaggccgaaatttcgatagctgacgcagcaaatgctattggcattccacgcatgctgattgatgttcgccatgaggggtctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaggcgcttgactggttgaaatcatattattgggaacctcaaagaatgtgattcgaanggattcaactgccaacctgaggaaagaaattaaacataaactgctagagatggctttctgcttgaaagtgaagcagactaacagttcacatacttcgggaaaacgaatgagacttgggcaactttgtgctagaaacaagtttctccctttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116692" stop="111231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116392" g_stop="116371" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="116199" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="120" r_length="97" r_score="0.837"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142">
            <donor d_prob="0.550" d_score="0.76"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116056" g_stop="115985" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="196" r_length="76" r_score="0.875"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115555" g_stop="115449" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="303" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="358" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.822" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="517" r_length="159" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111580" g_stop="111531" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="567" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E415504" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116392" e_stop="116371"/>
          <exon e_start="116290" e_stop="116199"/>
          <exon e_start="116056" e_stop="115985"/>
          <exon e_start="115555" e_stop="115449"/>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGCTTTTGCTCTTCAAA-GGGTAACATCCAATACAAAGACTTTTTTTTTTCTTCCTTCCGATAAAACTGAATGGATACTTATTATTTTTTTGGATATTAGATATCGACCTGGAGGAGCAGAGG-ATGCATTCCTGTCGCAGTGGATGTTA-CAGCTTCAATTATAGA-AATTCAACAG-AAAGATTCCTTTTTT-AGGTGATCCTTCATTGATTTTTTGTTTGTTTGTAGATAATCAAAGGGTATTCAATTGTTTATTAATTTGCAATGTCGATTTATCCTTTCTGTTTTTCACTTGGGCTTGTTAATGTGAACCTTTTTCTTTGCTATTCTTTTGCAGG-AAGGACCTAGGTGGAAATG-CTCTGCAGTCAGAAGAAATG-CTTTCAATGCTATATTGTATGGCAATTATG-AGGTACTTTTTATTTACTACTTGCTTTTTCTTGTTTCGAAATCTCCCTCCATTTGTATGGCTTATGAGAATGACTTTTTTTCCACTTAAGTTGTATTACTTGTGTTAATACAACTCACCATCAATAAGTTATGATGCTATTTACTCTATAATATCTTCTAATTTTTCATTCCATATAGTAGAAAAAAAGACTCAATTAGTGTTGTTATCTGCAGCTTCCTTGTTGCTGCAGATCTTCTATAGTTTGAGCATGTGATGCTTCTCCCAGTGTCCTTGATAGTGTTATTTAATTTAATATGAAAATACAATTGGATGAACACTGAGACTGTTACTATGATTTAAATGGTGGAACTTTAGGATAGTAGCTGTGTGTGGATGAGTTTGTATTTATAGCAACCAAAATCAGTATAATAATGGTAACTACTTTTCCAGGCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATGGTTAGTGTTGATGTGTATTTGCAACTTTGATATGAAAGTTGTTGATTGTTAAAAGTAAGTCATCTATACATAGTATTGACCAGAGTAAATTTCTGTTACTGCCTTTGTGAGTGAGTAACCAAGTAAGATAGCTATCAAGATGGCACTTTATGTTCTGAATCTGTTGTAGGCTTTAAAAAACCGAGAAGCTTATGCCGTGTGTTGCTTAATTTTTGCATCAGTTAACAATGTTTGTCTTGCTACGACTTATGATTTTGTAACTGAATTCTAATGTGAAGAAGCTGATTTATTAACATTGGTTAATATTTCCTTGTAGAGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATT</genome_strand>
        <mrna_strand>TGTTGCTTTTGCTCTTCAAAGGG................................................................................ACATCGACCTGGAGGAGCAGAGGAATGCATTCCTGTCGCAGTGGAAGTTACCGGCTTCAATTATAGAGAATTCAACAGAAAAGATCCTTTTTTTCAG..............................................................................................................................................GAAAGGATCTAGGTGGAAATGCCTCTGCAGTCAGAAGAAATGCCTTTCAATGCTATATTGTATGGCAATTATGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCCGAAATTTCGATAGCTGACGCAGCAAATGCTATTGGCATTCCACGCATGCTGATTGATGTTCGCCATG............................................................................................................................................................................................................................................................................................................................AGGGGTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACC-AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTTGACTGGTTGAAATCATATTATTGGGAACCTC-AAAGAATGTGATTCGAANGGATTCAACTGCCAACCTGAGGAAAGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGCTTGAAAGTGAAGCAGACTAACAGTTCACATACTTCGGGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E346087" ref_strand="+" ref_description="SGN-E346087 [cTOF-24-N4]">
      <seq>ctacaatggagtctctactagggtttatcgaaccatcagctgacgaaactgtggaaggcaactctctagctctcaaattggtgccatggataagctgggatgaatggaactctattcgagattcccttttctcttcttctcctcaatctgttgcttttgctcttcaaaggatatcgacctggaggagcagaggatgcattcctgtcgcagtggatgttacagcttcaattatagaaattcaacagaaagattccttttttaggaaggacctaggtggaaatgctctgcagtcagaagaaatgctttcaatgctatattgtatggcaattatgaggcttgtaaatggtgttgttgagaagacccgaaagaaggcagaaatttcgatagctgaggctgcaaatgctattggcattccgcgtatgctgattgatgttcgccatgagggctctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaaggcacttgactggttgaaatcatattattgggaacctcaaaagaatgtaattcgaagggattcaactgtcaacctgaggaatgaaattaaacataaactgctagagatggctttctgtttgaaagtgaagcagactaacagttcacatactttgggaaaacgaatgagacttgggcaactttgtgctagaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116840" stop="111248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116540" g_stop="116371" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="116199" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="262" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142">
            <donor d_prob="0.550" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116056" g_stop="115985" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="334" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115555" g_stop="115449" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="441" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="497" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113892" g_stop="113733" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="657" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111580" g_stop="111548" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="690" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E346087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116540" e_stop="116371"/>
          <exon e_start="116290" e_stop="116199"/>
          <exon e_start="116056" e_stop="115985"/>
          <exon e_start="115555" e_stop="115449"/>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113733"/>
          <exon e_start="111580" e_stop="111548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGAGTCTCTACTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGGGTAACATCCAATACAAAGACTTTTTTTTTTCTTCCTTCCGATAAAACTGAATGGATACTTATTATTTTTTTGGATATTAGATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAGGTGATCCTTCATTGATTTTTTGTTTGTTTGTAGATAATCAAAGGGTATTCAATTGTTTATTAATTTGCAATGTCGATTTATCCTTTCTGTTTTTCACTTGGGCTTGTTAATGTGAACCTTTTTCTTTGCTATTCTTTTGCAGGAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAGGTACTTTTTATTTACTACTTGCTTTTTCTTGTTTCGAAATCTCCCTCCATTTGTATGGCTTATGAGAATGACTTTTTTTCCACTTAAGTTGTATTACTTGTGTTAATACAACTCACCATCAATAAGTTATGATGCTATTTACTCTATAATATCTTCTAATTTTTCATTCCATATAGTAGAAAAAAAGACTCAATTAGTGTTGTTATCTGCAGCTTCCTTGTTGCTGCAGATCTTCTATAGTTTGAGCATGTGATGCTTCTCCCAGTGTCCTTGATAGTGTTATTTAATTTAATATGAAAATACAATTGGATGAACACTGAGACTGTTACTATGATTTAAATGGTGGAACTTTAGGATAGTAGCTGTGTGTGGATGAGTTTGTATTTATAGCAACCAAAATCAGTATAATAATGGTAACTACTTTTCCAGGCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATGGTTAGTGTTGATGTGTATTTGCAACTTTGATATGAAAGTTGTTGATTGTTAAAAGTAAGTCATCTATACATAGTATTGACCAGAGTAAATTTCTGTTACTGCCTTTGTGAGTGAGTAACCAAGTAAGATAGCTATCAAGATGGCACTTTATGTTCTGAATCTGTTGTAGGCTTTAAAAAACCGAGAAGCTTATGCCGTGTGTTGCTTAATTTTTGCATCAGTTAACAATGTTTGTCTTGCTACGACTTATGATTTTGTAACTGAATTCTAATGTGAAGAAGCTGATTTATTAACATTGGTTAATATTTCCTTGTAGAGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAACGTGAGTGAATTTTCCTTATTCTTATTGCATTGTGGTGGTTTTGCCATCTGATGTTACTCATTAATCAGTTTTCTTGCATCTGATTGCTACAATGCTTGATTTCTATTACATTGTAGTGTTTTCTTAGCACCTGTTGGTATGACCAATAAATTAATAAATTATGTTCGGTGCAAAAAATTCCATGTAAAGATGCAGATGTAGCTAAATCAAAGAATTAAGTTGTCATAAATCGTGTTAACTTTAAATTTATGGGATTTGAACTTTGGTCCTTTTCACTTCAAAAGACTATTGGTAGACAATATAAGACATTATGCTTGCTAAGAAGCTGAGATTGTTGACTCTCTCAAATAGATAGCTGAATTTTATAAACTTTTCTTAGCTATGCAGGGGTGTATACTGTGAACACCTAATTTTTGCACTATTTTAATTTCTCCTCAAGTTGACAATTTTTAGCTTAATTTTGTTTATTTCTACCCCTAGATCTTTTGGTTTTGCTCATGACCTTTGGCATGCCTGTTTATGGTGGTGCTTATCCTGACCGACCTCATAGACCCATATACTAGTCTCACAGTGTGATTGTGAGGTGCTCAACAAATGTGGGTACACGTGTGGGAAACTGCTCATAACTTGGTAGTTATGACAATCTAGAGCAGTGTAGGCGGCCAAACCATTTTCTCTTGAAGAGATTGGAAAATCTGATCTCATCCCTTCAGTTATTGCTCATAGGTGGTGACTATCTCTCTTATGTGTTGATCACAAGTCAAACTAACTCTTGTTGTTCTCATAACCTTCCCCTCTTCACACATACATTAATTCTACTATGCACAAAAAAAATAAAAAATCTTTTTGGTATTTTGTGAATGAGGGATGCAGTTAAAATGCACCAAAATTGGGAAATCAATTAAAATAAACCAAAATTTAGCTGAAAATTTTCAACTTCTGGAGAAATTAAATTAGGGCAACATATACTGCAAAGTTCTGTTGTACAGGGTTATTCTTATACCAAATTAGGTCGTAGATTGATTACCTGAAGTCAGTTCCTTTTTCCAAGTACGCACCTTCTACTTTTCTCACTTTATTGACCTACCTTTGTGTTGAGCTCTGTCACGTTGATCCAAATACACGATATTCCGTGGCAACATGGAGACTAAATGGTAAGTAATCGTATGTTCCATGATAAATTTGTTGTTTACATTCTGTGCTCTCTTACTAAATCTCATCAAATGTGAATTATTTCATAACCCAAGGAGAAAAATAGTACTCTTTAACCATTATCATAACCGCTCGATTGGAAATGGAACTTAGATCTCGATGTGACTGTATTATGTACAAAAGAAGTCAGGGAAGCTCTTGGACACTCTTTCCCACGATTGGAGTCATTTGAATTAAATTTCTCATGGATTATTGAACCACATGATGATTCTGATGATCAATGAAATGGGGTGAGAACCATGAGGATACAAGCCATTTCAACCATGAGCAAGAAATCACCTAGTGTTTTGTTTCGCTGGAATTTGAACATATGACCTCATGACCTTCATCCCACTTCATTGACCACTATCGCACAAAGTTACCCTGGTAAAGACCATGTTATTATAGTAACTACTAATATTTAATTCTTATTTTAGGTTGTCTAGGAACATTTAGTGACAATGCATGTCTATTTTATCGTGTCGTCAAAGTTGACAGGAATGTCAACCTCCAGAAGTAAATTAGTTTGAAGTTCAAAAATATTTTTTTAAAAAAAAACATGTCTATTGCATCAAGTCGTCAAAGTTGACAGTAAGTAATGTCAGCGACCAGAAATAAATTTATGTGAAGTTCAAAATAGGTTTGAAGGCTAATTTAATGGGTGGGTTATCAAGAGAAAGCTGCATTTCATAATATCCATCCTTTCAAGAAGGTGATGGTGTTATCAGTACATGACAACCAGACGATATAATTGCAGAACAAGTATAAAGAAAGGGTGTGAGAAGTATTTTCTGTACGGAAGTGATTGACATTATGACATTCCATATCACCTCTTACTGGGATTGTTTTTTATTTTTATCCAATTCTTAAAAAATAACTAATGCAAATTTTCTGGCTTTCTTCTCGGTCATACATTTACTATTATCTGGGTTTTTTCAACAATTTTTGTTTGCTTGTACAGGAATGAGACTTGGGCAACTTTGTGCTAGAAACA</genome_strand>
        <mrna_strand>CTACAATGGAGTCTCTACTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGG................................................................................ATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAG..............................................................................................................................................GAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATG............................................................................................................................................................................................................................................................................................................................AGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGACTTGGGCAACTTTGTGCTAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E437137" ref_strand="+" ref_description="SGN-E437137 [cSTA-2-H10]">
      <seq>cgaggtggagtctctgttagggtttatcgaaccatcagctgacgaaactgtggaaggcaactctctagctctcaaattggtgccatggataagctgggatgaatggaactctattcgagattcccttttctcttcttctcctcaatctgttgcttttgctcttcaaaggatatcgacctggaggagcagaggatgccattcctgtcccagtggatgttaccggcttcaattatagagattcaacagaaagatccttttttcaggaaggacctaggtggaaatgctctgcagtcagaagaaatgctttcaatgcctatattgtatggcaattatgaggcttgtaaatggtgttgttgagaagacccgaaagaaggccgaaatttcgatagcctgacgcagcaaatgctattggcattccacgcatgctgattgatgttcgccatgaggggtctcatcgtgatcttccttcactgcagttggtccgtcttgcctctaccaaggcgcttgactggttgaaatcatattattgggaacctcaaaagaatgtgattcgaagggattcaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="116834" stop="113526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116540" g_stop="116371" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116290" g_stop="116199" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="263" r_length="94" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142">
            <donor d_prob="0.550" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116056" g_stop="115985" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="336" r_length="73" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115555" g_stop="115449" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="444" r_length="108" r_score="0.935"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115132" g_stop="115077" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="500" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113892" g_stop="113826" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="567" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E437137" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116540" e_stop="116371"/>
          <exon e_start="116290" e_stop="116199"/>
          <exon e_start="116056" e_stop="115985"/>
          <exon e_start="115555" e_stop="115449"/>
          <exon e_start="115132" e_stop="115077"/>
          <exon e_start="113892" e_stop="113826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATGGAGTCTCTACTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGGGTAACATCCAATACAAAGACTTTTTTTTTTCTTCCTTCCGATAAAACTGAATGGATACTTATTATTTTTTTGGATATTAGATATCGACCTGGAGGAGCAGAGGATG-CATTCCTGTCGCAGTGGATGTTA-CAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAGGTGATCCTTCATTGATTTTTTGTTTGTTTGTAGATAATCAAAGGGTATTCAATTGTTTATTAATTTGCAATGTCGATTTATCCTTTCTGTTTTTCACTTGGGCTTGTTAATGTGAACCTTTTTCTTTGCTATTCTTTTGCAGGAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATG-CTATATTGTATGGCAATTATGAGGTACTTTTTATTTACTACTTGCTTTTTCTTGTTTCGAAATCTCCCTCCATTTGTATGGCTTATGAGAATGACTTTTTTTCCACTTAAGTTGTATTACTTGTGTTAATACAACTCACCATCAATAAGTTATGATGCTATTTACTCTATAATATCTTCTAATTTTTCATTCCATATAGTAGAAAAAAAGACTCAATTAGTGTTGTTATCTGCAGCTTCCTTGTTGCTGCAGATCTTCTATAGTTTGAGCATGTGATGCTTCTCCCAGTGTCCTTGATAGTGTTATTTAATTTAATATGAAAATACAATTGGATGAACACTGAGACTGTTACTATGATTTAAATGGTGGAACTTTAGGATAGTAGCTGTGTGTGGATGAGTTTGTATTTATAGCAACCAAAATCAGTATAATAATGGTAACTACTTTTCCAGGCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAG-CTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATGGTTAGTGTTGATGTGTATTTGCAACTTTGATATGAAAGTTGTTGATTGTTAAAAGTAAGTCATCTATACATAGTATTGACCAGAGTAAATTTCTGTTACTGCCTTTGTGAGTGAGTAACCAAGTAAGATAGCTATCAAGATGGCACTTTATGTTCTGAATCTGTTGTAGGCTTTAAAAAACCGAGAAGCTTATGCCGTGTGTTGCTTAATTTTTGCATCAGTTAACAATGTTTGTCTTGCTACGACTTATGATTTTGTAACTGAATTCTAATGTGAAGAAGCTGATTTATTAACATTGGTTAATATTTCCTTGTAGAGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAGGTCGATATCTTCCTTAGTCTCTATAATTTTTTGCTTAATATGTACATCTCTTAAATTTCACGTACAGTTGAAGACTTGAAGTTGTGACTCCTCCTGAAGTTCCCTTCCTTTTTAAGATTGATGGTTGTATTCATAATGGATTTTCTGTTATCAATACTAAGATGTATTCTGGTTTATAATGGTAAATCTAATTGGAGGAGGCACAAATTTATATTTGCTTAGAAAGAAAGCCTAGAAATGTCCCTGCCAGGTGATAACATGCATGTGGCAGATCTTCTGCTTCAGCAATAGATTTTTCTCATTCTCTACTTATCAAAAGATGATTGTTTCTGGGAACTATATATAGATGTGTCTACGAGGTATCCATCCAGAAAAAAAAACGAGATGAAGCTGTGAGGCTTGTGCCATTCTTGATGCTCCCCTTTCAGCCTGAGCTATACTGAATAAACATACTTCAAAACCCTGGTAGAATTGTGTTGCAATGGAGATCCTCTTGAATAGTGCTCATTAATTTCCATTTAATGTTGTGGCTTTTGTAGGATCTGCGGATTATGCTACAATCTTTTTGGATTACTGAAAGGCCTCTAGCTACCAATCGTCAATCATGATTCTTACAACCTTTATACATTAACATTGAACGAATTCAGCTAGATAAAAATCTGTTTAACAAAAATAAGTAATAAATCAAAGGAAGGAAATGAAGACTAGTGATAGTACGCAATCAAATTAGGATCAGACTGACGAAAAGGACTAATTCATAATTTTTCTGTTTTTTTTGAGTAATTTTAAATCCCACTTTAATTTTCCCCATATTTTTCTATGGGTACATATTTGTCCATATGGTTGAACATATAGTCCGAATCACTTTTCACAGGTGAATTTGATGAGCATTGTGTGTCCCCGAGGTCCGTGAATAGGCCTAATGTTTTCTGATTCACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCACAGGTGAATTTGATGAGCATTGTGTGTTCCCCAGGTCCGTGAATAGGCCTAATGTTTTCTGATTTACGTGCTGCTAATTAGAAAAGACCTTGTGTATTGCTCAAAAGATGTTATTTAATGTATAATTTTCTTGTCATGCTCATATATATGTAAGAGAGAAAAAATAGGAAGTTTCAGCTGGATTATGTCTTAAAATGATAATAATTTCAGGCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTG</genome_strand>
        <mrna_strand>CGAG-GTGGAGTCTCTGTTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGG................................................................................ATATCGACCTGGAGGAGCAGAGGATGCCATTCCTGTCCCAGTGGATGTTACCGGCTTCAATTATAGAGATTCAACAGAAAGATCCTTTTTTCAG..............................................................................................................................................GAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCCTATATTGTATGGCAATTATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCCGAAATTTCGATAGCCTGACGCAGCAAATGCTATTGGCATTCCACGCATGCTGATTGATGTTCGCCATG............................................................................................................................................................................................................................................................................................................................AGGGGTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTGATTCGAAGGGATTCAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E720687" ref_strand="+" ref_description="SGN-E720687 [FC11CB10]">
      <seq>gggcgattggcggccaatcggccgaattgaagagagtaagcggctgagggttgacacttctgagtgagagagactgaggctgagcaccaccagcaaccaccggcgaccggcgacggagattccattatttcattattaaagagttgcatcaagtttgctggtgtttatgggcataagatggccaaggattctaacaccgaagcagctctcgcaaataatactgagccagaagaacccactaaaagcgcttcaatgttttgacgaagcaaaatgcaagtatccaacttaccgtcataatggtcctgtttatagcactatgattaatattttgggcagatcagggagaataactgagatgaagcgaacaattaatcagatgaaagaggactcgtgtgagtgtcatgactcaatatttgtgaatgccattagaagctatgcgcaagctggattaacaaacgaagccatttttctttttaagtctcttccggagttcaattgtatagaatggacaagatctttgagtactcttttggagatattggtagaagaatctaagctagaatctgtttatcagttgttccttgagaactcttgtggatgggaagtgaagtctcgggcacatttcttgaatttgttgatgaatgctctttgtagaatgaaacgctctgatcttgcattgcatattttccaagagatgagttaccagaactgctatccaaacaaagagagttacaggatcttgatgaggggtttatgtgaagaaaaacggctcaatgaggctactcatctattgtactcaatgttttggaggatatctcaaaagggaagtggtgaagatgtggttgtctatcgagctttatttgaagcgttgtgtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="123104" stop="127030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123372" g_stop="123515" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123516" i_stop="125992" i_length="2477">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125993" g_stop="126730" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="879" r_length="738" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E720687" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123372" e_stop="123515"/>
          <exon e_start="125993" e_stop="126730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAATCAGAGGCCCAATCCGTTTATTTCCCAAGAGAGTAAGCGGCTGAGGGTTGACACTTCTGAGTGAGAGAGACTGAGGCTGAGCACCACCAGCAACCACCGGCGACCGGCGACGGAGATTCCATTATTTCATTATTAAAGGTATATATGTTCTCTCTTATCTATTCAAGTCAGTTCCTTTGCCTGTGCGTGATTGATAATTGGCTTGAAATGATTTTTTCTTGTGTATATATAGAATATCTTCTGTGATAGAGTAGTGCTTGCTACCTGTTCGATGGATTGTTTGTGTGAAATCTTGTAATTTCCCCCAAAAATTAAAACTTGTTTTTTGCTTCAATTAATATTGGGCTCTTCGAGAACATGAATATTTTGGTTTGGAAGCTTATGGAGTGACATTTTCCGGATAAAAGCCAGTATTTTTAAGAATTAGTAGGAAGCATAAATTTAGTATCTGTCTGGAAGATAGAAATCGAAGCATTGAGATCATACTTTTTAGGAGGTGGAAATTTCTGGGCTTGTTTGGTTTGTTTTCATTCTTATACTGTGGACATAATAATTACATTAAGCAAATAACTTCTATAATAAAATAAATGACTATTTTAAGATAGCAGCATATCTGGTTAGGATTTTGAACTTTCCTAACCATGGACCTGAATTCCTTAAGAAGTGAGGTTTCTTAACACCTATAATGGGAACCGTTGTATGCCTTGAAAGAAAGGGGATACTTGATAAACCAAATCCTCTAGCACTGGAAAATAGCCTTAAGAACCAGCTCGGGATTTCACAAGATGGTGAAACCCCGAGCTAGTTCTTGACTCCATCTTTTCCGCTGCAAGAGGAATTGCTTTATCAAATATGCTTTTCTTTTGAAGTATATACTGGTTCTCATCTATGCTTTCAAAAATCTTAAATTCTTCAGGAATCAAGTGGAGAAAAGTCGAGCATTTTCTTCCATCTCCCCTTCATTTTGTCGTTTTCTAGGTTTCTTAGGATACTGCTTGCAGTACTTTCTAAGACAATACAATATCATTTTGTGCTGAGTTCGCTGAGAGAGTAACTACTGTTGCACAAGCATATTGTTGCAGATGACAGAAGTGCAAAGGTGGAGTATATTGAGTAGTTAACTGGAACAATATTAGAGTATTAAAGAGTCATGTCATTTTGAGGAGTAAGTAGAAGAGCAATAGTAACTTCAGCTTAGCCTGCTTGATTTTTGTTTTTGGAATCCACTGATTTAAAACTGACATCTGGAAGAACAAATTAATCTTAACATCTAAATAAGTAAATTTATAATTAACAACAAAGGGAAAAAAACTGTAAAACTAACAGCAATTGGTTTTCATAGACTTAAACCACCTTTTATGAGCAAAAATGAGATCCCAGAGTTAATTGTCCAAAGTTGGCATTCTCATTTCTTAGTTAAAGAGCTAAGATACTTAAAGGAGGAATAGGGCGCCAATTTTTATTTTTATTTGTTGGTTGAGAAAAGTAAGGTTCATTAGTTAATAGAGTAAGGTTCATTAGTTATTAGTTAACACCCAGAGAGTATTGCTGGTAAGCAAAATCGCAATAGTTAGTTAGGAGATAATGAAGTTAATCATGCATTAAAAATAGAATAACTTGCATTAATCAAATTATTTACAAAGTTGTCCTTCATTATTATGGTGGAAAAGATATAAAAAAAAGGTATTGAGGGGCAATTGAGTCTTTAGTTGAGTTAATATATGCATTAAAAACATTTCATTGCTAATACCTAGAAATCCATGGTATTAGCAATACACACCTTTAATGTACATCAGAGTAAGTTAGAAAAGAGTACCAAACAAGGTACTAGTCATAAATAAAATTAATACATGCATTGTATTTTTTAATACACTGTACCAAACAACCCCATGACGTGTATATATTAGCCCTTTTAACAAAGGTATATGTACTCTAATTGACAAAGTTAACGTCTTACTTGAAGCATATGGGCTGTTTAAGGAATATTTTATATATATATATATATTAATTTTTTTCAATTATATTTGATTATAATTATACTTTTACATTAAATTCGGCCGATCATCCCTTTGGTCTCCCACCACTGCTTTGCGAAATCAAGTATTCCTTCTTTTAGCCACAGTCCTCCTCCTAAATCCTTTGTGTATTGAATAGTTTTATGCGCTCATCATTTAGGTTGAGTTTGATATCTTTCTTGCTTATTTTGGTGATCGTTGAGCTATGAACACCACTTATGGGAGGGTAATACCGATAATTAGACGAACTGAACTTATGCACACCACCTATTCGATAAAAATCCTGATAGGGAAATGAGCTTTTTGGTTAAGTCTGAATAACCTAGTGTTAATCGGATATTTCATAGGAATAAACGTGGGGTCAGTTCACTTGAGCAGTAACTTGTAGCAACTGTGATTCATATTGCCATTTTACTTGAATAATTAATTACCTGCATGACGATTTTCCAGTCATTGAAGTTAGAATGATTGATGAGGAATTATGAATGAAGTAAATTTACTACTACACCATAATGTCAGTTCTTGATGGAATTCTCGAAACATTGAAGTCGTCATCCTTTATATATATAATTGTAATAATATTCTCGTATATTGTTTCAGAGTTGCATCAAGTTTGCTGGTGTTTATGGGCATAAGATGGCCAAGGATTCTAACACCGAAGCAGCTCTCGCAAATAATACTGAGCCAGAAGAACCCACTAAAAGCGCTTCAATGTTTTGACGAAGCAAAATGCAAGTATCCAACTTACCGTCATAATGGTCCTGTTTATAGCACTATGATTAATATTTTGGGCAGATCAGGGAGAATAACTGAGATGAAGCGAACAATTAATCAGATGAAAGAGGACTCGTGTGAGTGTCATGACTCAATATTTGTGAATGCCATTAGAAGCTATGCGCAAGCTGGATTAACAAACGAAGCCATTTTTCTTTTTAAGTCTCTTCCGGAGTTCAATTGTATAGAATGGACAAGATCTTTGAGTACTCTTTTGGAGATATTGGTAGAAGAATCTAAGCTAGAATCTGTTTATCAGTTGTTCCTTGAGAACTCTTGTGGATGGGAAGTGAAGTCTCGGGCACATTTCTTGAATTTGTTGATGAATGCTCTTTGTAGAATGAAACGCTCTGATCTTGCATTGCATATTTTCCAAGAGATGAGTTACCAGAACTGCTATCCAAACAAAGAGAGTTACAGGATCTTGATGAGGGGTTTATGTGAAGAAAAACGGCTCAATGAGGCTACTCATCTATTGTACTCAATGTTTTGGAGGATATCTCAGAAGGGAAGTGGTGAAGATGTGGTTGTCTATCGAGCTTTATTGGAAGCGTTGTGTGAAAA</genome_strand>
        <mrna_strand>GGGCGATTGGCGG-CCAATCGGCCGAATT--GAAGAGAGTAAGCGGCTGAGGGTTGACACTTCTGAGTGAGAGAGACTGAGGCTGAGCACCACCAGCAACCACCGGCGACCGGCGACGGAGATTCCATTATTTCATTATTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCATCAAGTTTGCTGGTGTTTATGGGCATAAGATGGCCAAGGATTCTAACACCGAAGCAGCTCTCGCAAATAATACTGAGCCAGAAGAACCCACTAAAAGCGCTTCAATGTTTTGACGAAGCAAAATGCAAGTATCCAACTTACCGTCATAATGGTCCTGTTTATAGCACTATGATTAATATTTTGGGCAGATCAGGGAGAATAACTGAGATGAAGCGAACAATTAATCAGATGAAAGAGGACTCGTGTGAGTGTCATGACTCAATATTTGTGAATGCCATTAGAAGCTATGCGCAAGCTGGATTAACAAACGAAGCCATTTTTCTTTTTAAGTCTCTTCCGGAGTTCAATTGTATAGAATGGACAAGATCTTTGAGTACTCTTTTGGAGATATTGGTAGAAGAATCTAAGCTAGAATCTGTTTATCAGTTGTTCCTTGAGAACTCTTGTGGATGGGAAGTGAAGTCTCGGGCACATTTCTTGAATTTGTTGATGAATGCTCTTTGTAGAATGAAACGCTCTGATCTTGCATTGCATATTTTCCAAGAGATGAGTTACCAGAACTGCTATCCAAACAAAGAGAGTTACAGGATCTTGATGAGGGGTTTATGTGAAGAAAAACGGCTCAATGAGGCTACTCATCTATTGTACTCAATGTTTTGGAGGATATCTCAAAAGGGAAGTGGTGAAGATGTGGTTGTCTATCGAGCTTTATTTGAAGCGTTGTGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E423889" ref_strand="+" ref_description="SGN-E423889 [STM-42-P23]">
      <seq>tttttttttttttgagcaaaaaaggtttattaccagaaaagaaatagggggaatccagcaatacagttgtagttatagactatgctaaggtgtctgtagctgctctagtgtcttgaaagaagcctcattcataccgttttcacaacagattgcacctaataatgactgccacacatggatatctggagtcaaggctagagagatcatgtcctccaaacacataattgcactgtgtaaatcacctacttggcagagacctcggataagagaattcaaagttccaactctaggccaaaaggaattaattgacatttgctccatcaccttgcttgcttcaacatatttaccatcttcacataacccatctaccaaagtttcataagtttcatagtttggcacgcaacctacttgcctagacatcctttccaaatacttaatagcacaagtagattttctttcatggcataggccttttataactacattatacaatctaatattcggaacacagtttttttgcaccatctcacaatcaatgaccataattgcctcgtcaacctggccatccctgaaaagagcagctacctttgcttcataaatcaccactgacggtttgaagcctctgtcatgcatttccttgagcactttgttaccttcatcaatcttgccttcggcataaaagtcaacagacattgctctgtagctatctgaactgggaactatgccttttatcaaagcttcattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="127904" stop="126567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127604" g_stop="126867" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="747" r_length="738" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E423889" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127604" e_stop="126867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGCAAAAAAGGTTTATTACCAAATAGAAAATGGGCGAAATCCAGCAATACAGTTGTAGTTATAGACAACGCTAAGGTGTCTGTAGCTGCTCTAGTGTCTTGAAAGAAGCCTCATTCAATCCATTTTCACAACAGATTGCACCTAATAATGACTGCCAAACATTGATATCTGGAGTCAAGGCTAGAGAGATCATGTCCTCCAAACACATAATTGCACTGTGCAAATCACCTACTTGGCAGAGACCTCGGATAAGAGAATTCAAAGTTCCAACTCTAGGCCAAAAGGAATTAATTGACATTTGCTCCATCACCTTGCTTGCTTCAACGTATTTACCATCTTCACATAACCCATCTACCAAAGTTCCATAAGTTTCATAGTTTGGCACGCAACCTACTTGCCTAGACATCCTTTCCAAATACTTAATAGCACAAGTAGATTTTCTTTCATGGCATAAGCCTTTTATAACTACATTATACAATCTAATATTCGGAACACAGTTTTTTTGCACCATCTCACAATCAATGACCATAATTGCCTCGTCAACCTGGCCATCCCTGAAAAGAGCAGCTACCTTTGCTTCATAAATCGCCACTGACGGTTTGAAGCCTCTCTCATGCATTTCCTTGAGCACTTTGTCACCTTCATCAATCTTGCCTTCGGCGTAAAAGTCAACAGCCATCGCTCTGTAGCTATCTGAACTGGGAACTATGCCTTTTATCAAAGCTTCATTAAT</genome_strand>
        <mrna_strand>TTTTGAGCAAAAAAGGTTTATTACCAGAAAAGAAATAGGGGGAATCCAGCAATACAGTTGTAGTTATAGACTATGCTAAGGTGTCTGTAGCTGCTCTAGTGTCTTGAAAGAAGCCTCATTCATACCGTTTTCACAACAGATTGCACCTAATAATGACTGCCACACATGGATATCTGGAGTCAAGGCTAGAGAGATCATGTCCTCCAAACACATAATTGCACTGTGTAAATCACCTACTTGGCAGAGACCTCGGATAAGAGAATTCAAAGTTCCAACTCTAGGCCAAAAGGAATTAATTGACATTTGCTCCATCACCTTGCTTGCTTCAACATATTTACCATCTTCACATAACCCATCTACCAAAGTTTCATAAGTTTCATAGTTTGGCACGCAACCTACTTGCCTAGACATCCTTTCCAAATACTTAATAGCACAAGTAGATTTTCTTTCATGGCATAGGCCTTTTATAACTACATTATACAATCTAATATTCGGAACACAGTTTTTTTGCACCATCTCACAATCAATGACCATAATTGCCTCGTCAACCTGGCCATCCCTGAAAAGAGCAGCTACCTTTGCTTCATAAATCACCACTGACGGTTTGAAGCCTCTGTCATGCATTTCCTTGAGCACTTTGTTACCTTCATCAATCTTGCCTTCGGCATAAAAGTCAACAGACATTGCTCTGTAGCTATCTGAACTGGGAACTATGCCTTTTATCAAAGCTTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E277160" ref_strand="+" ref_description="SGN-E277160 [cLEL-3-B2]">
      <seq>gcacgagctgaggctgagcaccaccacaagcaactagcggcgaccggcgaccggcgacggagattccattctctcattcttaaagaaatggtgattcctccaccagttagaccagacagagtgctgaagtatctcaaaccttacgtgctgaggatgcatttcacaaacaagtatgtaaatgctcaagtagttcacacgccaacagcaacagtggctgcttctgcaagctcacaagagaaaggcttaaggcttgccatggtagaatcaaaagaaaatactagagacgttgctgctgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="134079" stop="138059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134374" g_stop="134459" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134460" i_stop="137545" i_length="3086">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137546" g_stop="137759" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="299" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E277160" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134374" e_stop="134459"/>
          <exon e_start="137546" e_stop="137759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGACACTGAGGCTGAGCACCACCACAAGCAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAGGTATATATTTTATCTCTTATCTCTTCAAGCCAGTTCCTTTGCGTGTGCGTGATCAATAGTTGGCTTGAAATGATTTTTTTCTTGCGTATATATAGAATTTCTTCTGTGATAGAGTAGTGCTTGCTACCTGTTCGATGGATTGTTTGTGTGAAATCTTGTAATTTCCCCCAAAAATTAGAACTTGTGTTTTGCTTCAATTGATGTTGGGCTCCTCGGTAGCATTAATATTTTGGTTTGGAAGCTTATGGAGTGACATTTGGCGGAGAAAATCCTGAATTTATAAGAATTAGTAGGAAGCATACATTTACTATCTGTCTGGAAGACAGAAATTGAAGCATTGAGATGATATTTTTTAGGAGGTGGAAATTTCTGGGCTTGTTTGGTTTGATTTCATTCTTATACGGTGGACATAATAATTACATTAAGCAAATAACTTCTATAATAAAATTATTGAATATTATGAAGATAGCAGCATATCTGGTTAGGATTTTGAACTTTTCTGACCATGGATCAGAATTCCTAAAGAAGTGAGGTTTCTTAACTCCTATAATGGGAACCGTTGTATGCCTTCAAAGAAAGGGATACTTGATTAACCAAATCCTCTAGCACTGGAAAATAGAATGAAGAACCAGTTCGGGATTTCACAAGATGGTGAAACTCCGAGCTAATTCTTGACTCCATTTTTTCCTCCGCAAGAGGAATTGGTTTATCACATATGCTTTTCTTTTGAAGTATAAAGTGGTTCTCATCTATGCGTCAAAAATCTTAAATTCTTCCGGAATCAAGTGGAGAAAAGGAGAGCATTTTCTTCCATCTCCCCTTCATTTTGTCATTTTCTAGGTTTCTTAGGATATTGTTTGCAGTACTTTCTAAGAAATACAGATCATTTTGTGCTGAGTCCACTGAGAGAGTAACTACTGTTGCACAAGCATATTGTTGCAGATGACAAAAGTGCAAAGGTGGATTATATTGAGTAGTTAACTGGAACAATATTAGAATATTGAAGAGTCATGTAATTATGAGGAGTAAGTAGAAGAGCAATAGTAACTGCAGCTTAACCTGCTTGATTTTTGTTTTTGGAATCCACTGATTTCAAAATGACATTAGGAACATATTAATCTTAACATCTAAATAAATAAATTTAGAATCAACAACAAAGGGAAAAAAACTGTAAAATTAACAGCAATTTGTTTTCATAGACTTAAACCCACCTTTTATGAGCAAAAATGAGATTCCAGAGTTAATTGTCCAAACTTGGCATTCTCATTTCTTAGTTAAAGAGCTAAGATACTTAAAGGAGGAATAGGGCGCCAATTCTTTTTTATTTTTTTGGGTTGAGAAAGTAAGGTTCATTAGTTAATAGTTAACACCCAGAGAGTGTTGCAGGTAAGCAAAATGGCAATAGTTAGTTAGGAGATAATGAAGTTAATCATGCTGTCCAAGTCAGTTATAGCTTTTAAATTGCTTCAAACAGACAAAAGATAGAGACACATGTTTCAGATGATGCAAGGATCTCCTCTTTCCTTCGAAGAATATGTTTCTAGTTCTTGGTCTATCTAATCAAGTTCAAAACTGGTTAAGAGATCTATGTCCAACAGGGTTGGGCTCATCATCCCAAACTGAAAATGAAAAGAAGTGGCAGTGAAAGGCCAAATTCTTTTTTTCATCAATTGTAGTATCTATGCGGCAATCCTTTTAGATTTACTATCCTTTTTCTATTATACAAAATGAGGTTTTAACCCACTTCAAAAGATCCCTTAAGATCATTAATATGATGAGTTTTCTTACAACCAAGAAACAAAAATATAACCGTTTATAGATATTGAAATGAATGCCTTCCATCATAAAAATGATGAGTTTTCTGACAATCAAGAAATAAAAATAATGATAATGAGTTTCTATTGGTAATTTCTTTTTCCCAGTCATAGTATATGACATTATCGATCTTAATCTAAGGAATCCATCCCTAACGAGCTAGGTTGTCAAAATTGTTTTTGGTTATTTCATAGAATATGTAGAACAAAAAGAAGAGTCAAGAGTAACAACTTTCCCCATTATGCAAGCATTGGCCTGATCCTGTTTACCGGTTTGTGATCAGAGGCGGATCTATATGTGGGGGCACAGGCTCACGTGCACTCATGCTTCCCACAGTAGACCATGTCTAGTAATACTATATCTTTTCAAAAGTACTAAAATAGTTATGAGTTATGACTTACATGTACACCCTAGCTCAAAGACTCATTTGGTGTCAATGGTTATCGAGGATACGTATATTTGTGAGGTTCAGGTTCAAATCTCACGGTTATATATATATATATATATATATATATATATATATATATAATGTATGTATGTATAAAAATACCAAAATTTTAAAAATTAAATAATTTTGCACCCGTCTTCATGAAATCCTAAATCTGCCCTTCCCACTCTGTACCTTGCTGGACAAGCTTACGTGCTCCCTTCATGTTGTTTTCTATCCACATTTGCCTTAATCTCAGACTCATCTTCTCCTACTATGTTGTCCACATAATTGTAAAAGGTAATAAATGGGACATTACCTCTCTAGATCTGATATGGGACATTATTTTTCAAATATGTTTAAGAGGAGCTTGCACTGTGGTCAATAAAGCTTGAGAGCCATGAGGTTTCAAGTAACACTTGGTGATTTCCTTAAATCTATCCAAGCTTTGATAGACAGAGTTACCCGATACTTGTGTTGGTGGGAGGTAGCAGGTACCATGTTGGGATTAGTCGAGGTGCGCAGGAGTCTGGCTAAAAAGAATTCCCCTTGGTCAATGAAAGTAAAGGATAAAAGCAAGTCACCTTAAATGATCTGTCAAGTTGTAGTAGATCTTGCTTGTTACTTGGTTTGTCACTGAGCTCTATGAAGCCATCATATAGAAGGTTGTTTAGCTATCTGTTACAAGTAATACTAATTAGCTCCAGGGTGAGAATCAAAACTGCATTTCTCGAAGATGAGAAGTACTTCCTGAATATTGAGAGCTTTATCTGAGAGATATTTTCTTATTTCATTAGCCTCCTTGATGATATTTCTTTTGATATATCTTTATATTCTCTAGCAGAAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGC</genome_strand>
        <mrna_strand>GCACGA-GCTGAGGCTGAGCACCACCACAAGCAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTCTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E709168" ref_strand="+" ref_description="SGN-E709168 [FA42DE12]">
      <seq>ctgaggctgagcaccaccacaagcaactagcggcgaccggcgaccggcgacggagattccattctctcattattaaagaaatggtgattcctccaccagttagaccagacagagtgctgaagtatctcaaaccttacgtgctgaggatgcatttcacaaacaagtatgtaaatgctcaagtagttcacacgccaacagcaacagtggctgcttctgcaagctcacaagagaaaggcttaaggcttgccatggtagaatcaaaagaaaatactagagacgttgctgctgcagcaaaaataggtaagttgttgggagagcggttgcaggctaaaggagttcctgctgtatctgttttctttaagaaagaacaaagataccatggaaaggtcaaagcagttatcgattcagtccgagaagcaggcatagaactggtttgattggattcccttttattagtctgcttggacaatttgcttgcctcagttcttgcaatgtataagatgtcacttctgatatttcctgtgttttgaggcttctattccaagaacaaggttcataacctcgtcgccccccacacgctacatatttttcgtagcaagagttgcatgatacttgtgaattttattcatcatttggttgaaagttcattaaaagccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="134082" stop="138431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134382" g_stop="134459" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134460" i_stop="137545" i_length="3086">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137546" g_stop="138130" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="663" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="664" polyA_stop="676"/>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E709168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134382" e_stop="134459"/>
          <exon e_start="137546" e_stop="138130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGCTGAGCACCACCACAAGCAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAGGTATATATTTTATCTCTTATCTCTTCAAGCCAGTTCCTTTGCGTGTGCGTGATCAATAGTTGGCTTGAAATGATTTTTTTCTTGCGTATATATAGAATTTCTTCTGTGATAGAGTAGTGCTTGCTACCTGTTCGATGGATTGTTTGTGTGAAATCTTGTAATTTCCCCCAAAAATTAGAACTTGTGTTTTGCTTCAATTGATGTTGGGCTCCTCGGTAGCATTAATATTTTGGTTTGGAAGCTTATGGAGTGACATTTGGCGGAGAAAATCCTGAATTTATAAGAATTAGTAGGAAGCATACATTTACTATCTGTCTGGAAGACAGAAATTGAAGCATTGAGATGATATTTTTTAGGAGGTGGAAATTTCTGGGCTTGTTTGGTTTGATTTCATTCTTATACGGTGGACATAATAATTACATTAAGCAAATAACTTCTATAATAAAATTATTGAATATTATGAAGATAGCAGCATATCTGGTTAGGATTTTGAACTTTTCTGACCATGGATCAGAATTCCTAAAGAAGTGAGGTTTCTTAACTCCTATAATGGGAACCGTTGTATGCCTTCAAAGAAAGGGATACTTGATTAACCAAATCCTCTAGCACTGGAAAATAGAATGAAGAACCAGTTCGGGATTTCACAAGATGGTGAAACTCCGAGCTAATTCTTGACTCCATTTTTTCCTCCGCAAGAGGAATTGGTTTATCACATATGCTTTTCTTTTGAAGTATAAAGTGGTTCTCATCTATGCGTCAAAAATCTTAAATTCTTCCGGAATCAAGTGGAGAAAAGGAGAGCATTTTCTTCCATCTCCCCTTCATTTTGTCATTTTCTAGGTTTCTTAGGATATTGTTTGCAGTACTTTCTAAGAAATACAGATCATTTTGTGCTGAGTCCACTGAGAGAGTAACTACTGTTGCACAAGCATATTGTTGCAGATGACAAAAGTGCAAAGGTGGATTATATTGAGTAGTTAACTGGAACAATATTAGAATATTGAAGAGTCATGTAATTATGAGGAGTAAGTAGAAGAGCAATAGTAACTGCAGCTTAACCTGCTTGATTTTTGTTTTTGGAATCCACTGATTTCAAAATGACATTAGGAACATATTAATCTTAACATCTAAATAAATAAATTTAGAATCAACAACAAAGGGAAAAAAACTGTAAAATTAACAGCAATTTGTTTTCATAGACTTAAACCCACCTTTTATGAGCAAAAATGAGATTCCAGAGTTAATTGTCCAAACTTGGCATTCTCATTTCTTAGTTAAAGAGCTAAGATACTTAAAGGAGGAATAGGGCGCCAATTCTTTTTTATTTTTTTGGGTTGAGAAAGTAAGGTTCATTAGTTAATAGTTAACACCCAGAGAGTGTTGCAGGTAAGCAAAATGGCAATAGTTAGTTAGGAGATAATGAAGTTAATCATGCTGTCCAAGTCAGTTATAGCTTTTAAATTGCTTCAAACAGACAAAAGATAGAGACACATGTTTCAGATGATGCAAGGATCTCCTCTTTCCTTCGAAGAATATGTTTCTAGTTCTTGGTCTATCTAATCAAGTTCAAAACTGGTTAAGAGATCTATGTCCAACAGGGTTGGGCTCATCATCCCAAACTGAAAATGAAAAGAAGTGGCAGTGAAAGGCCAAATTCTTTTTTTCATCAATTGTAGTATCTATGCGGCAATCCTTTTAGATTTACTATCCTTTTTCTATTATACAAAATGAGGTTTTAACCCACTTCAAAAGATCCCTTAAGATCATTAATATGATGAGTTTTCTTACAACCAAGAAACAAAAATATAACCGTTTATAGATATTGAAATGAATGCCTTCCATCATAAAAATGATGAGTTTTCTGACAATCAAGAAATAAAAATAATGATAATGAGTTTCTATTGGTAATTTCTTTTTCCCAGTCATAGTATATGACATTATCGATCTTAATCTAAGGAATCCATCCCTAACGAGCTAGGTTGTCAAAATTGTTTTTGGTTATTTCATAGAATATGTAGAACAAAAAGAAGAGTCAAGAGTAACAACTTTCCCCATTATGCAAGCATTGGCCTGATCCTGTTTACCGGTTTGTGATCAGAGGCGGATCTATATGTGGGGGCACAGGCTCACGTGCACTCATGCTTCCCACAGTAGACCATGTCTAGTAATACTATATCTTTTCAAAAGTACTAAAATAGTTATGAGTTATGACTTACATGTACACCCTAGCTCAAAGACTCATTTGGTGTCAATGGTTATCGAGGATACGTATATTTGTGAGGTTCAGGTTCAAATCTCACGGTTATATATATATATATATATATATATATATATATATATATAATGTATGTATGTATAAAAATACCAAAATTTTAAAAATTAAATAATTTTGCACCCGTCTTCATGAAATCCTAAATCTGCCCTTCCCACTCTGTACCTTGCTGGACAAGCTTACGTGCTCCCTTCATGTTGTTTTCTATCCACATTTGCCTTAATCTCAGACTCATCTTCTCCTACTATGTTGTCCACATAATTGTAAAAGGTAATAAATGGGACATTACCTCTCTAGATCTGATATGGGACATTATTTTTCAAATATGTTTAAGAGGAGCTTGCACTGTGGTCAATAAAGCTTGAGAGCCATGAGGTTTCAAGTAACACTTGGTGATTTCCTTAAATCTATCCAAGCTTTGATAGACAGAGTTACCCGATACTTGTGTTGGTGGGAGGTAGCAGGTACCATGTTGGGATTAGTCGAGGTGCGCAGGAGTCTGGCTAAAAAGAATTCCCCTTGGTCAATGAAAGTAAAGGATAAAAGCAAGTCACCTTAAATGATCTGTCAAGTTGTAGTAGATCTTGCTTGTTACTTGGTTTGTCACTGAGCTCTATGAAGCCATCATATAGAAGGTTGTTTAGCTATCTGTTACAAGTAATACTAATTAGCTCCAGGGTGAGAATCAAAACTGCATTTCTCGAAGATGAGAAGTACTTCCTGAATATTGAGAGCTTTATCTGAGAGATATTTTCTTATTTCATTAGCCTCCTTGATGATATTTCTTTTGATATATCTTTATATTCTCTAGCAGAAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGCAAAAATAGGTAAGTTGTTGGGAGAGCGGTTGCAGGCTAAAGGAGTTCCTGCTGTATCTGTTTTCTTTAAGAAAGAACAAAGATACCATGGAAAGGTCAAAGCAGTTATCGATTCAGTCCGAGAAGCAGGCATAGAACTGGTTTGATTGGATTCCCTTTTATTAGTCTGCTTGGACAATTTGCTTGCCTCAGTTCTTGCAATGTATAAGATGTCACTTCTGATATTTCCTGTGTTTTGAGGCTTCTATTCCAAGAACAAGGTTCATAACCTCGTCGCCCCCCACACGCTACATATTTTTCGTAGCAAGAGTTGCATGATACTTGTGAATTTTATTCATCATTTGGTTGAAAGTTCATTAAAAGCCTTCAAAA</genome_strand>
        <mrna_strand>CTGAGGCTGAGCACCACCACAAGCAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGCAAAAATAGGTAAGTTGTTGGGAGAGCGGTTGCAGGCTAAAGGAGTTCCTGCTGTATCTGTTTTCTTTAAGAAAGAACAAAGATACCATGGAAAGGTCAAAGCAGTTATCGATTCAGTCCGAGAAGCAGGCATAGAACTGGTTTGATTGGATTCCCTTTTATTAGTCTGCTTGGACAATTTGCTTGCCTCAGTTCTTGCAATGTATAAGATGTCACTTCTGATATTTCCTGTGTTTTGAGGCTTCTATTCCAAGAACAAGGTTCATAACCTCGTCGCCCCCCACACGCTACATATTTTTCGTAGCAAGAGTTGCATGATACTTGTGAATTTTATTCATCATTTGGTTGAAAGTTCATTAAAAGCCTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E735131" ref_strand="+" ref_description="SGN-E735131 [LB14CB02]">
      <seq>caactagcggcgaccggcgaccggcgacggagattccattctctcattattaaagaaatggtgattcctccaccagttagaccagacagagtgctgaagtatctcaaaccttacgtgctgaggatgcatttcacaaacaagtatgtaaatgctcaagtagttcacacgccaacagcaacagtggctgcttctgcaagctcacaagagaaaggcttaaggcttgccatggtagaatcaaaagaaaatactagagacgttgctgctgcagcaaaaataggtaagttgttgggagagcggttgcaggctaaaggagttcctgctgtatctgttttctttaagaaagaacaaagataccatggaaaggtcaaagcagttatcgattcagtccgagaagcaggcatagaactggtttgattggattcccttttattagtctgcttggacaatttgcttgcctcagttcttgcaatgtataagatgtcacttctgatatttcctgtgttttgaggcttctattccaagaacaaggttcataacctcgtcgccccccacacgctacatatttttcgtagcaagagttgcatgatacttgtgaattttattcatcatttggttgaaagttannnnaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="134105" stop="138412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134405" g_stop="134459" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134460" i_stop="137545" i_length="3086">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137546" g_stop="138130" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="640" r_length="585" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E735131" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134405" e_stop="134459"/>
          <exon e_start="137546" e_stop="138130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAGGTATATATTTTATCTCTTATCTCTTCAAGCCAGTTCCTTTGCGTGTGCGTGATCAATAGTTGGCTTGAAATGATTTTTTTCTTGCGTATATATAGAATTTCTTCTGTGATAGAGTAGTGCTTGCTACCTGTTCGATGGATTGTTTGTGTGAAATCTTGTAATTTCCCCCAAAAATTAGAACTTGTGTTTTGCTTCAATTGATGTTGGGCTCCTCGGTAGCATTAATATTTTGGTTTGGAAGCTTATGGAGTGACATTTGGCGGAGAAAATCCTGAATTTATAAGAATTAGTAGGAAGCATACATTTACTATCTGTCTGGAAGACAGAAATTGAAGCATTGAGATGATATTTTTTAGGAGGTGGAAATTTCTGGGCTTGTTTGGTTTGATTTCATTCTTATACGGTGGACATAATAATTACATTAAGCAAATAACTTCTATAATAAAATTATTGAATATTATGAAGATAGCAGCATATCTGGTTAGGATTTTGAACTTTTCTGACCATGGATCAGAATTCCTAAAGAAGTGAGGTTTCTTAACTCCTATAATGGGAACCGTTGTATGCCTTCAAAGAAAGGGATACTTGATTAACCAAATCCTCTAGCACTGGAAAATAGAATGAAGAACCAGTTCGGGATTTCACAAGATGGTGAAACTCCGAGCTAATTCTTGACTCCATTTTTTCCTCCGCAAGAGGAATTGGTTTATCACATATGCTTTTCTTTTGAAGTATAAAGTGGTTCTCATCTATGCGTCAAAAATCTTAAATTCTTCCGGAATCAAGTGGAGAAAAGGAGAGCATTTTCTTCCATCTCCCCTTCATTTTGTCATTTTCTAGGTTTCTTAGGATATTGTTTGCAGTACTTTCTAAGAAATACAGATCATTTTGTGCTGAGTCCACTGAGAGAGTAACTACTGTTGCACAAGCATATTGTTGCAGATGACAAAAGTGCAAAGGTGGATTATATTGAGTAGTTAACTGGAACAATATTAGAATATTGAAGAGTCATGTAATTATGAGGAGTAAGTAGAAGAGCAATAGTAACTGCAGCTTAACCTGCTTGATTTTTGTTTTTGGAATCCACTGATTTCAAAATGACATTAGGAACATATTAATCTTAACATCTAAATAAATAAATTTAGAATCAACAACAAAGGGAAAAAAACTGTAAAATTAACAGCAATTTGTTTTCATAGACTTAAACCCACCTTTTATGAGCAAAAATGAGATTCCAGAGTTAATTGTCCAAACTTGGCATTCTCATTTCTTAGTTAAAGAGCTAAGATACTTAAAGGAGGAATAGGGCGCCAATTCTTTTTTATTTTTTTGGGTTGAGAAAGTAAGGTTCATTAGTTAATAGTTAACACCCAGAGAGTGTTGCAGGTAAGCAAAATGGCAATAGTTAGTTAGGAGATAATGAAGTTAATCATGCTGTCCAAGTCAGTTATAGCTTTTAAATTGCTTCAAACAGACAAAAGATAGAGACACATGTTTCAGATGATGCAAGGATCTCCTCTTTCCTTCGAAGAATATGTTTCTAGTTCTTGGTCTATCTAATCAAGTTCAAAACTGGTTAAGAGATCTATGTCCAACAGGGTTGGGCTCATCATCCCAAACTGAAAATGAAAAGAAGTGGCAGTGAAAGGCCAAATTCTTTTTTTCATCAATTGTAGTATCTATGCGGCAATCCTTTTAGATTTACTATCCTTTTTCTATTATACAAAATGAGGTTTTAACCCACTTCAAAAGATCCCTTAAGATCATTAATATGATGAGTTTTCTTACAACCAAGAAACAAAAATATAACCGTTTATAGATATTGAAATGAATGCCTTCCATCATAAAAATGATGAGTTTTCTGACAATCAAGAAATAAAAATAATGATAATGAGTTTCTATTGGTAATTTCTTTTTCCCAGTCATAGTATATGACATTATCGATCTTAATCTAAGGAATCCATCCCTAACGAGCTAGGTTGTCAAAATTGTTTTTGGTTATTTCATAGAATATGTAGAACAAAAAGAAGAGTCAAGAGTAACAACTTTCCCCATTATGCAAGCATTGGCCTGATCCTGTTTACCGGTTTGTGATCAGAGGCGGATCTATATGTGGGGGCACAGGCTCACGTGCACTCATGCTTCCCACAGTAGACCATGTCTAGTAATACTATATCTTTTCAAAAGTACTAAAATAGTTATGAGTTATGACTTACATGTACACCCTAGCTCAAAGACTCATTTGGTGTCAATGGTTATCGAGGATACGTATATTTGTGAGGTTCAGGTTCAAATCTCACGGTTATATATATATATATATATATATATATATATATATATATAATGTATGTATGTATAAAAATACCAAAATTTTAAAAATTAAATAATTTTGCACCCGTCTTCATGAAATCCTAAATCTGCCCTTCCCACTCTGTACCTTGCTGGACAAGCTTACGTGCTCCCTTCATGTTGTTTTCTATCCACATTTGCCTTAATCTCAGACTCATCTTCTCCTACTATGTTGTCCACATAATTGTAAAAGGTAATAAATGGGACATTACCTCTCTAGATCTGATATGGGACATTATTTTTCAAATATGTTTAAGAGGAGCTTGCACTGTGGTCAATAAAGCTTGAGAGCCATGAGGTTTCAAGTAACACTTGGTGATTTCCTTAAATCTATCCAAGCTTTGATAGACAGAGTTACCCGATACTTGTGTTGGTGGGAGGTAGCAGGTACCATGTTGGGATTAGTCGAGGTGCGCAGGAGTCTGGCTAAAAAGAATTCCCCTTGGTCAATGAAAGTAAAGGATAAAAGCAAGTCACCTTAAATGATCTGTCAAGTTGTAGTAGATCTTGCTTGTTACTTGGTTTGTCACTGAGCTCTATGAAGCCATCATATAGAAGGTTGTTTAGCTATCTGTTACAAGTAATACTAATTAGCTCCAGGGTGAGAATCAAAACTGCATTTCTCGAAGATGAGAAGTACTTCCTGAATATTGAGAGCTTTATCTGAGAGATATTTTCTTATTTCATTAGCCTCCTTGATGATATTTCTTTTGATATATCTTTATATTCTCTAGCAGAAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGCAAAAATAGGTAAGTTGTTGGGAGAGCGGTTGCAGGCTAAAGGAGTTCCTGCTGTATCTGTTTTCTTTAAGAAAGAACAAAGATACCATGGAAAGGTCAAAGCAGTTATCGATTCAGTCCGAGAAGCAGGCATAGAACTGGTTTGATTGGATTCCCTTTTATTAGTCTGCTTGGACAATTTGCTTGCCTCAGTTCTTGCAATGTATAAGATGTCACTTCTGATATTTCCTGTGTTTTGAGGCTTCTATTCCAAGAACAAGGTTCATAACCTCGTCGCCCCCCACACGCTACATATTTTTCGTAGCAAGAGTTGCATGATACTTGTGAATTTTATTCATCATTTGGTTGAAAGTTCATTAAAAGCCTTCAAAA</genome_strand>
        <mrna_strand>CAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGCAAAAATAGGTAAGTTGTTGGGAGAGCGGTTGCAGGCTAAAGGAGTTCCTGCTGTATCTGTTTTCTTTAAGAAAGAACAAAGATACCATGGAAAGGTCAAAGCAGTTATCGATTCAGTCCGAGAAGCAGGCATAGAACTGGTTTGATTGGATTCCCTTTTATTAGTCTGCTTGGACAATTTGCTTGCCTCAGTTCTTGCAATGTATAAGATGTCACTTCTGATATTTCCTGTGTTTTGAGGCTTCTATTCCAAGAACAAGGTTCATAACCTCGTCGCCCCCCACACGCTACATATTTTTCGTAGCAAGAGTTGCATGATACTTGTGAATTTTATTCATCATTTGGTTGAAAGTTANNNNAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E555408" ref_strand="-" ref_description="SGN-E555408 [cTSC-2-P17]">
      <seq>caggaaataaggaaacaggctaatgatgcacgggcatccaccatttacatgccttaacagagtccagcagatagaagagatcgttataacagcttgagtccggagatttgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagatacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgcaaatggatcttttattggtgcaggtgttttcctgactttcttgattaggtccatgcaaagagtgaaaaaacttgataaatttgagaaaatgatttaagccattatacattcccttctcccccaccatttttttttttggcttcattttcacttttttattttattttatttttttgtgggtgagagaggaggtgaaatgtgacctcttgcaatatttaggaaccatttttattatgtggtgcaagcataggtacttgtaccaaaaattaatttgggaaaggagataatcatgttcctcatatttgtaactatgttcatatttttgtatagcaataaaatttatgcttcaaattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="144624" stop="143119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144324" g_stop="144298" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="134" r_length="107" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.641" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143985" g_stop="143844" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="276" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143754" g_stop="143411" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="620" r_length="344" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E555408" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555408" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="144324" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143844"/>
          <exon e_start="143754" e_stop="143411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTT-ACAGAGTCCAGCAGATAGAAGAGATCGTTA-AACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAGGTGAATTTTTCAGGACTATCTTCAGGTTTGATGAATTTGAATTGCACTTGTTTTTGCTGCCAAAATTGACCTTATCTTTCTGTATGCAGGTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGGGTGAGAGAGGAGGTGAAATGTGACCTCTTGCAATATTTAGGAACCATTTTTATTATGTGGTGCAAGCATAGGTACTTGTACCAAAAATTGATTTGGGAAAGGAGATAATCATGTTCCTCATATTTGTAACTATGTTCATATTTTTGTATAGCAATAAAATTTATGCTTCAAATTAAGAAATGCATGTA</genome_strand>
        <mrna_strand>CAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGGCATCCACCATTTACATGCCTTAACAGAGTCCAGCAGATAGAAGAGATCGTTATAACAGCTTGAGTCCGGAGATTTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGATACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG.........................................................................................GTGTTTTCCTGACTTTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGGGTGAGAGAGGAGGTGAAATGTGACCTCTTGCAATATTTAGGAACCATTTTTATTATGTGGTGCAAGCATAGGTACTTGTACCAAAAATTAATTTGGGAAAGGAGATAATCATGTTCCTCATATTTGTAACTATGTTCATATTTTTGTATAGCAATAAAATTTATGCTTCAAATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E726576" ref_strand="+" ref_description="SGN-E726576 [LA12AH09]">
      <seq>cgatagaggttgctgggacttttttattctgtctacgaaaaggatgcaaaaaaggttatgcaagggcttattgatctggaagcacttcagcccacaggagacatgtcagctgtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagctacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgcaaatggatcttttattggtgcaggtgttttcctgactctcttgattaggtccatgcaaagagtgaaaaaacttgataaatttgagaaaatgatttaagccattatacattcccttctcccccaccattttttttttttggcttcatttccacttttttattttatttaattttttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="146682" stop="143299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146383" g_stop="146330" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146329" i_stop="145488" i_length="842">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145487" g_stop="145431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="111" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123">
            <donor d_prob="0.707" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145307" g_stop="145224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="195" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="280" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="342" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="417" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="522" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143985" g_stop="143844" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="664" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="143754" g_stop="143599" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="821" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E726576" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146383" e_stop="146330"/>
          <exon e_start="145487" e_stop="145431"/>
          <exon e_start="145307" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143844"/>
          <exon e_start="143754" e_stop="143599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAGGTCAGGCTAGTGTTTCTTTTTTGTAGTTTGTAGTAGCACAATTAGGAACCAAATGCGTTGTGCTACAGTAGTCTTAGTACAAGCTGGTGCAAATATACCTGCTACCGTTATGGTCCCAATACACACTATTTTCTTCATATTTATTGAAATTCTTTATTTTTTCTGAGTGTGTTGTTATCCTGCTGTCTCCATCAAGAGGTATGCTTAGGTTCTTCATTCTTTCAGGTTTAACATAGCCATAGGCCATAACTTGGTCCAAATGTAATTAATGATCAACTAAACATTTGAGGTCAAAATTCTTTCTAAGCAAAACCCAAAATAAATACTTTTGTGTGATTGTGTCATCTCAAGTAGAAAACATTCTCCTTCCATTTTCAACAATTGACAATATTGTAATTCTCTGAAATAATTTTAATTTATCAAAAAGATTCTCAGTAATGTACTTACAATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAGGTGAATTTTTCAGGACTATCTTCAGGTTTGATGAATTTGAATTGCACTTGTTTTTGCTGCCAAAATTGACCTTATCTTTCTGTATGCAGGTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCA-TTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGG</genome_strand>
        <mrna_strand>CGATAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCAAGGGCTTATTGATCTGGAAGCACTTCAGCCCACAGGAGACATGTCAGCT...........................................................................................................................GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG.........................................................................................GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTTGGCTTCATTTCCACTTTTTTATTTTATTTAATTTTTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E731680" ref_strand="+" ref_description="SGN-E731680 [LA27DE04]">
      <seq>ccgtttattgatctggaagcacttcagcccacaggagacatgccatctgtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagctacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgcaaatggatcttttattggtgcaggtgttttcctgactctcttgattaggtccatgcaaagagtgaaaaaacttgataaatttgagaaaatgatttaagccattatacattcccttctcccccaccattttttttttttggcttcattttcccttttttatttaatttaattttttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="145776" stop="143299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145478" g_stop="145431" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123">
            <donor d_prob="0.707" d_score="0.88"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145307" g_stop="145224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="132" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="217" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="279" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="354" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="459" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143985" g_stop="143844" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="601" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143754" g_stop="143599" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="758" r_length="157" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E731680" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145478" e_stop="145431"/>
          <exon e_start="145307" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143844"/>
          <exon e_start="143754" e_stop="143599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAGGTGAATTTTTCAGGACTATCTTCAGGTTTGATGAATTTGAATTGCACTTGTTTTTGCTGCCAAAATTGACCTTATCTTTCTGTATGCAGGTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCA-TTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGG</genome_strand>
        <mrna_strand>CCGTTTATTGATCTGGAAGCACTTCAGCCCACAGGAGACATGCCATCT...........................................................................................................................GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG.........................................................................................GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTTGGCTTCATTTTCCCTTTTTTATTTAATTTAATTTTTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E731600" ref_strand="+" ref_description="SGN-E731600 [LA27CE04]">
      <seq>gcttattgatctggaagcacttcagcccacaggagacatgtcagctgtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagctacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgcaaatggatcttttattggtgcaggtgttttcctgactctcttgattaggtccatgcaaagagtgaaaaaacttgataaatttgagaaaatgatttaagccattatacattcccttctcccccaccattttttttttttggcttcatttccactttttaattttatttaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="145776" stop="143305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145476" g_stop="145431" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123">
            <donor d_prob="0.707" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145307" g_stop="145224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="130" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="215" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="277" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="352" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="457" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143985" g_stop="143844" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="599" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143754" g_stop="143605" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="750" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E731600" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145476" e_stop="145431"/>
          <exon e_start="145307" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143844"/>
          <exon e_start="143754" e_stop="143605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAGGTGAATTTTTCAGGACTATCTTCAGGTTTGATGAATTTGAATTGCACTTGTTTTTGCTGCCAAAATTGACCTTATCTTTCTGTATGCAGGTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCA-TTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTT</genome_strand>
        <mrna_strand>GCTTATTGATCTGGAAGCACTTCAGCCCACAGGAGACATGTCAGCT...........................................................................................................................GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG.........................................................................................GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTTGGCTTCATTTCCACTTTTTAATTTTATTTAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E314703" ref_strand="+" ref_description="SGN-E314703 [cTOA-20-G11]">
      <seq>ccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagctacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgcaaatggatcttttattggtgcaggtgttttcctgactctcttgattangtccatgcaaagagtgaaaaaacttgataaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="145566" stop="143395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145266" g_stop="145224" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="128" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="190" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="265" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="370" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143985" g_stop="143844" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="512" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="143754" g_stop="143695" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="572" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E314703" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145266" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143844"/>
          <exon e_start="143754" e_stop="143695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAGGTGAATTTTTCAGGACTATCTTCAGGTTTGATGAATTTGAATTGCACTTGTTTTTGCTGCCAAAATTGACCTTATCTTTCTGTATGCAGGTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTG</genome_strand>
        <mrna_strand>CCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG.........................................................................................GTGTTTTCCTGACTCTCTTGATTANGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E728994" ref_strand="+" ref_description="SGN-E728994 [LA19CE08]">
      <seq>gaatttggtatgatgggagacatcaagaatttcacaagagagaggttgctgggacttttttattctgtctacgaaaaggatgcaaaaaaggttatgcaagggcttattgatctggaagcacttcagcccacaggagacatgtcagctgtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaactcagagttcgggtcctcgagtctgagagagcagctcgaaaagctacaattcttcaaatggcaaccatgtacacagtcatagggggcaccctcctaaaccttggtgtcacttttaccagtcagggcagtcaaatgtttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="146719" stop="143566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146419" g_stop="146330" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146329" i_stop="145488" i_length="842">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145487" g_stop="145431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="147" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123">
            <donor d_prob="0.707" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145307" g_stop="145224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="316" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="378" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="453" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144200" g_stop="144096" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="558" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.641" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="143985" g_stop="143866" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="678" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E728994" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146419" e_stop="146330"/>
          <exon e_start="145487" e_stop="145431"/>
          <exon e_start="145307" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144096"/>
          <exon e_start="143985" e_stop="143866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGGTATGATGGGAGACATCAAGAATTTCACAAGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAGGTCAGGCTAGTGTTTCTTTTTTGTAGTTTGTAGTAGCACAATTAGGAACCAAATGCGTTGTGCTACAGTAGTCTTAGTACAAGCTGGTGCAAATATACCTGCTACCGTTATGGTCCCAATACACACTATTTTCTTCATATTTATTGAAATTCTTTATTTTTTCTGAGTGTGTTGTTATCCTGCTGTCTCCATCAAGAGGTATGCTTAGGTTCTTCATTCTTTCAGGTTTAACATAGCCATAGGCCATAACTTGGTCCAAATGTAATTAATGATCAACTAAACATTTGAGGTCAAAATTCTTTCTAAGCAAAACCCAAAATAAATACTTTTGTGTGATTGTGTCATCTCAAGTAGAAAACATTCTCCTTCCATTTTCAACAATTGACAATATTGTAATTCTCTGAAATAATTTTAATTTATCAAAAAGATTCTCAGTAATGTACTTACAATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAGGTAATTAGTCTCATACAGATCATTTCTCACTTTCTAATACTTCTCGTAAAATTTCTTATACAAATCATTTCTCACTTTCCAATACTTCTTGAAATTGTGATCTTCTTAAGTCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCA</genome_strand>
        <mrna_strand>GAATTTGGTATGATGGGAGACATCAAGAATTTCACAAGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCAAGGGCTTATTGATCTGGAAGCACTTCAGCCCACAGGAGACATGTCAGCT...........................................................................................................................GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG..............................................................................................................TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E289374" ref_strand="+" ref_description="SGN-E289374 [cLET-3-C3]">
      <seq>ttttttccatgctgatccacatccagggaatcttgcaattgatgttgacgaagctttaatctattatgattttggtatgatgggagacatcaagaatttcacaagagagaggttgctgggacttttttattctgtctacgaaaaggatgcaaaaaaggttatgcaagggcttattgatcttgaagcacttcagcccacaggagacatgtcagctgtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggctgcaattggtgaggatttgtttgctatagcaactgatcaaccattccgtttcccttccacttttacatttgtgctcagggcattttccacactagaagggattggctatatattggatcctaatttctccttccctaagattgcagcaccatatgcacaggagctcttggacttgagacagcagcagcgcagtggtccacaacttgttcaggaaataaggaaacaggctaatgatgcacggacatccaccatttccatgccttacagagtccagcagatagaagagatcgttaaacagcttgagtccggagatctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="146786" stop="143816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146486" g_stop="146330" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146329" i_stop="145488" i_length="842">
            <donor d_prob="0.838" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145487" g_stop="145431" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="214" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="145307" g_stop="145224" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="298" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144821" g_stop="144737" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="383" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="144518" g_stop="144457" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="445" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="144372" g_stop="144298" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="520" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="144200" g_stop="144116" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="605" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E289374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146486" e_stop="146330"/>
          <exon e_start="145487" e_stop="145431"/>
          <exon e_start="145307" e_stop="145224"/>
          <exon e_start="144821" e_stop="144737"/>
          <exon e_start="144518" e_stop="144457"/>
          <exon e_start="144372" e_stop="144298"/>
          <exon e_start="144200" e_stop="144116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCATGCTGATCCACATCCAGGGAATCTTGCAATTGATGTTGACGAAGCTTTAATCTATTATGATTTTGGTATGATGGGAGACATCAAGAATTTCACAAGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAGGTCAGGCTAGTGTTTCTTTTTTGTAGTTTGTAGTAGCACAATTAGGAACCAAATGCGTTGTGCTACAGTAGTCTTAGTACAAGCTGGTGCAAATATACCTGCTACCGTTATGGTCCCAATACACACTATTTTCTTCATATTTATTGAAATTCTTTATTTTTTCTGAGTGTGTTGTTATCCTGCTGTCTCCATCAAGAGGTATGCTTAGGTTCTTCATTCTTTCAGGTTTAACATAGCCATAGGCCATAACTTGGTCCAAATGTAATTAATGATCAACTAAACATTTGAGGTCAAAATTCTTTCTAAGCAAAACCCAAAATAAATACTTTTGTGTGATTGTGTCATCTCAAGTAGAAAACATTCTCCTTCCATTTTCAACAATTGACAATATTGTAATTCTCTGAAATAATTTTAATTTATCAAAAAGATTCTCAGTAATGTACTTACAATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAGGTATGCAGAATTTGCAACTTTCTATAAAAATAATAGCCAAATTTATTAGAATTTTGGTATCCTTTAGTATATTGAAGATAATAAATATACGATGGACTATATTTGGTTCAAATATTTGTATGATCCACTCGTTTAAAGAGGCATTTATGAAGATTGGCTGTAGTTTCTCATTGCTGCCATGTTTTCTTGAAACTCACCTTGCCAAGATCCTATCTTTTGGGAAGTCTATCACAATTTTGAAATTGATTTCGGAAATTAGACTGACATATTCCATTTTTTAAAATCAAATGTGTATGGAATTGCACTGTAGTTACAATACTATAATTTCAAGAAGTAGAAAGTTAGTTTCACTTCAAACTATCTTTGCGTGTTTCACAATGTAACAAGAGGAAGACAATGCAGGATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAGGTGCGATCTCTCTCTCTTTTTCCCTCCCCCTCTCTCTCATTCTGAAAAGCAAGGCAACATCCATTAGTTAAATATAATTGTTAAGATCCTTGACTTTAAACAGTCTAGACTCTTGAGATTATTTCCCTTTTTGTCAGTTCGCATTTTTGTGGCTAGATGTTAAATCCACTTACAGATCACGGAACTGAATGTTTCCATCTCCTGTTGCATTCTTGCAGGGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAGGTTGAAAGATTGTCAAACAACTAACCCGTCTGACAATCAAATCTTAGCCTCTAATGCTCCAAAATTATTCAATCTGCCCTGCAGGAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGATGTACCCTATTAAACCTTTGCTTAACAATTTCTTGTTTTAAGATACGATCAAATAAGCATAACTGATGTATATACCATCTAATGTGGAATACTGNCAGGCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAAC</genome_strand>
        <mrna_strand>TTTTTTCCATGCTGATCCACATCCAGGGAATCTTGCAATTGATGTTGACGAAGCTTTAATCTATTATGATTTTGGTATGATGGGAGACATCAAGAATTTCACAAGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCT...........................................................................................................................GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG..........................................................................................................................................................................................................................GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG....................................................................................GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT.................................................................................................GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E550177" ref_strand="+" ref_description="SGN-E550177 [TUS-5-E9]">
      <seq>ccaatccctgcaagaatgcaacaggagatggaaacattcagttccgtgatctgtaagtggatttaacatctagccacaaaaatgcgaactgacaaaaagggaaataatctcaagagtctagactgtttaaagtcaaggatcttaacaattatatttaactaatggatgttgccttgcttttcagaatgagagagagggggagggaaaaagagagagagatcgcaccttctagtgtggaaaatgccctgagcacaaatgtaaaagtggaagggaaacggaatggttgatcagttgctatagcaaacaaatcctgcattgtcttcctcttgttacattgtgaaacacgcaaagatagtttgaagtgaaactaactttctacttcttgaaattatagtattgtaactacagtgcaattccatacacatttgattttaaaaaatggaatatgtcagtctaatttccgaaatcaatttcaaaattgtgatagacttcccaaaagataggatcttggcaaggtgagtttcaagaaaacatggcagcaatgagaaactacagccaatcttcataaatgcctcttttaacgagtggatcatacaaatatttgaaccaaatatagtccatcgtatattttattatcttcatatactaaaggataccaaaattctaataaatttggctattatttttatagaaaagtgcaaattctgcatacctcaccaattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="144212" stop="145537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144512" g_stop="145237" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E550177" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144512" e_stop="145237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTCAAGAAAACATGGCAGCAATGAGAAACTACAGCCAATCTTCATAAATGCCTCTTTAAACGAGTGGATCATACAAATATTTGAACCAAATATAGTCCATCGTATA-TTTATTATCTTCAATATACTAAAGGATACCAAAATTCTAATAAATTTGGCTATTATTTTTATAGAAAGTTGCAAATTCTGCATACCTCACCAATTGCAG</genome_strand>
        <mrna_strand>CCAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTCAAGAAAACATGGCAGCAATGAGAAACTACAGCCAATCTTCATAAATGCCTCTTTTAACGAGTGGATCATACAAATATTTGAACCAAATATAGTCCATCGTATATTTTATTATCTTC-ATATACTAAAGGATACCAAAATTCTAATAAATTTGGCTATTATTTTTATAGAAAAGTGCAAATTCTGCATACCTCACCAATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E389791" ref_strand="+" ref_description="SGN-E389791 [TUS-4-E9]">
      <seq>ccaatccctgcaagaatgcaacaggagatggaaacattcagttccgtgatctgtaagtggatttaacatctagccacaaaaatgcgaactgacaaaaagggaaataatctcaagagtctagactgtttaaagtcaaggatcttaacaattatatttaactaatggatgttgccttgcttttcagaatgagagagagggggagggaaaaagagagagagatcgcaccttctagtgtggaaaatgccctgagcacaaatgtaaaagtggaagggaaacggaatggttgatcagttgctatagcaaacaaatcctgcattgtcttcctcttgttacattgtgaaacacgcaaagatagtttgaagtgaaactaactttctacttcttgaaattatagtattgtaactacagtgcaattccatacacatttgattttaaaaaatggaatatgtcagtctaatttccgaaatcaatttcaaaattgtgatagacttcccaaaagataggatcttggcaaggtgagtttcaagaaaacatggcagcaatgagaaactacagccaatcttcataaatgcctcttttaacgagtggatcatacaaatatttgaaccaaatatagtccatcgtatatttattatcttncatatactaaaggataccaaaattctaataaatttggctattatttttatagaaagttgcaaattctgcatacctcaccaattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="144212" stop="145537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144512" g_stop="145237" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E389791" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144512" e_stop="145237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTCAAGAAAACATGGCAGCAATGAGAAACTACAGCCAATCTTCATAAATGCCTCTTTAAACGAGTGGATCATACAAATATTTGAACCAAATATAGTCCATCGTATATTTATTATCTTCAATATACTAAAGGATACCAAAATTCTAATAAATTTGGCTATTATTTTTATAGAAAGTTGCAAATTCTGCATACCTCACCAATTGCAG</genome_strand>
        <mrna_strand>CCAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTCAAGAAAACATGGCAGCAATGAGAAACTACAGCCAATCTTCATAAATGCCTCTTTTAACGAGTGGATCATACAAATATTTGAACCAAATATAGTCCATCGTATATTTATTATCTTNCATATACTAAAGGATACCAAAATTCTAATAAATTTGGCTATTATTTTTATAGAAAGTTGCAAATTCTGCATACCTCACCAATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E226980" ref_strand="+" ref_description="SGN-E226980 [cLED-1-B19]">
      <seq>caatccctgcaagaatgcaacaggagatggaaacattcagttccgtgatctgtaagtggatttaacatctagccacaaaaatgcgaactgacaaaaagggaaataatctcaagagtctagactgtttaaagtcaaggatcttaacaattatatttaactaatggatgttgccttgcttttcagaatgagagagagggggagggaaaaagagagagagatcgcaccttctagtgtggaaaatgccctgagcacaaatgtaaaagtggaagggaaacggaatggttgatcagttgctatagcaaacaaatcctgcattgtcttcctcttgttacattgtgaaacacgcaaagatagtttgaagtgaaactaactttctacttcttgaaattatagtattgtaactacagtgcaattccatacacatttgattttaaaaaatggaatatgtcagtctaatttccgaaatcaatttcaaaattgtgatagacttcccaaaagataggatcttggcaaggtgagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="+" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="144213" stop="145335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144513" g_stop="145035" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="+" ref_id="SGN-E226980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144513" e_stop="145035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTC</genome_strand>
        <mrna_strand>CAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E550425" ref_strand="+" ref_description="SGN-E550425 [TUS-5-E9]">
      <seq>caagagagattttcaagttgttgtatttagggtaagttgtgcagtgaaggatgatatagaagtgattagatgtattcgacttactctagctagttactttcagcttttgactctcttggagagcaaatcttataagacaatcaacctttttcctcatgctccacttgcatttaccacctgtcacctgcctcaaagcaagacaaatattgattgtaaattccccttccacttgttatcattgttgcggcatttaaaactcagaagaaacaattgaatccatctctttgtatctggtggccagaagcattattgtgctttgcattaaaatattttggagtagagagagctaattctgtgtatattaataagagaaatattatgtgtacacaggttatgcaagggcttattgatcttgaagcacttcagcccacaggagacatgtcagctgtatgttacataccctgacctcaaaaccctgcaaagaaaaggaagaaaatcactaatgaatttaaggccttatctaagagtagctatctattgaaactcctaataaccttttgttcttcttaggtgaggagatctgttcagtttttcttggacaacttgttgaaccaaagaccagatcagcagcaaactttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="146178" stop="144937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145878" g_stop="145237" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E550425" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145878" e_stop="145237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGC</genome_strand>
        <mrna_strand>CAAGAGAGATT-TTCAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E389531" ref_strand="+" ref_description="SGN-E389531 [TUS-4-E9]">
      <seq>aatgcaagagagattcttcaagttgttgtatttagggtaagttgtgcagtgaaggatgatatagaagtgattatatgtcttcgacttactctagctagttactttcagcttttgactctcttggagagcaaatcttataagacaatcaacctttttcctcatgctccacttgcatttaccacctgtcacctgcctcaaagcaagacaaatattgattgtaaattccccttccacttgttatcattgttgcggcatttaaaactcagaagaaacaattgaatccatctctttgtatctggtggccagaagcattattgtgctttgcattaaaatattttggagtagagagagctgattctgtgtatattaataagagaaatattatgtgtacacaggttatgcaagggcttattgatcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="146182" stop="145161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="145882" g_stop="145461" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E389531" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="145882" e_stop="145461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAA</genome_strand>
        <mrna_strand>AATGCAAGAGAGATTCTTCAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTATATGTCTTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTGATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E330457" ref_strand="+" ref_description="SGN-E330457 [cTOD-4-J13]">
      <seq>ttccacacagagaatcaatggaacaaatctagctaagcgtgttgctactccacttcctgcaaagaaacaaaaatctaaagaacttctgcctgctgaagatctaaaggttttaccttcagatgaaggtttcagctgggctaatgagaactataattccatccaaagaagtatagatgtgtggtcctttgtcctttcgctgcgggtgcgtgttttcttggacaatgcgaaatggacatatgtgggtggctttactgaagataaacagaaagtgagaagacgtggaacagcttcatggttaagagaatgtgtgctgcagcttggcccaacatttatcaaacttgggcagttatcctctactagatctgatctatttcctcgagaatttgtagatgagcttgctaagttgcaggacagagtaccagccttctcccccgagagagcaaaagagtttattaaaaaggagctgggaattccagttgatattttgtataaggagtttgaagatcaacccattgcagcagctagtcttggtcaggtgcaccgggctatcttacacagtggagagaaagttgttgtaaaagttcagagacccggcctaaagaaactatttgacattgatctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="150757" stop="148992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150457" g_stop="150193" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150192" i_stop="150031" i_length="162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.603" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150030" g_stop="149887" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="409" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149886" i_stop="149750" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149749" g_stop="149624" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="535" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="149623" i_stop="149381" i_length="243">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="149380" g_stop="149293" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="623" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E330457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150457" e_stop="150193"/>
          <exon e_start="150030" e_stop="149887"/>
          <exon e_start="149749" e_stop="149624"/>
          <exon e_start="149380" e_stop="149293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAGGTTGGTTTTTCTCTTTTCTTTATTTAATTTGCATTGATATTTGAGGGTAACCTGTTACCAAGTATGGAGCAAAAATCATGCAATGATACTCTCTCATCCCTTCTTCGTCTTCTCGGATTATGTGATTCGATGAGCACTATGTAATGAGCTTTGTACCTGCAGAAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAGATGAGCTTGCTAAGTTGCAGGTATAGCTTACCTTCTTTCTGAGAAAGCGAACATGATCTCCTCAATTACTTGCACAATTGCCTTTGTATTAGTTCACGCTTGAAAATGAATTATGCTAGCATTGACTGTGATTTCGTATTGCTTTGTAATCATTCAGGACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAATTCCAGTTGATATTTTGTATAAGGAGTTTGAAGATCAACCCATTGCAGCAGCTAGTCTTGGTCAGGTGTTTGGTTTATTTATAATTTTTTTTTAAATTTCTTTAAAGTGAACTGTATTCTTTTAGCTCTGATTTCTTAAAAAATATTATCTAGTCCATCAGCTAATTTTTTGAGACGAAGCCCATCGACTTTGATGAAATGAAGCACAAAGTGGTTACCTTTTAGATTGTAGCCAGGCTTTAGCAACCTGGTCTTCCATAATACTGCATATAATTCGTCCTGATTTTTTGTTTGCAAAATGCTCTTAGGTGCACCGGGCTATCTTACACAGTGGAGAGAAAGTTGTTGTAAAAGTTCAGAGACCCGGCCTAAAGAAACTATTTGACATTGATCTGA</genome_strand>
        <mrna_strand>TTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAG..................................................................................................................................................................AAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAGATGAGCTTGCTAAGTTGCAG.........................................................................................................................................GACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAATTCCAGTTGATATTTTGTATAAGGAGTTTGAAGATCAACCCATTGCAGCAGCTAGTCTTGGTCAG...................................................................................................................................................................................................................................................GTGCACCGGGCTATCTTACACAGTGGAGAGAAAGTTGTTGTAAAAGTTCAGAGACCCGGCCTAAAGAAACTATTTGACATTGATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E330874" ref_strand="+" ref_description="SGN-E330874 [cTOD-10-D22]">
      <seq>ttgctactccacttcctgcaaagaaacaaaaatctaaagaacttctgcctgctgaagatctaaaggttttaccttcagatgaaggtttcagctgggctaatgagaactataattccatccaaagaagtatagatgtgtggtcctttgtcctttcgctgcgggtgcgtgttttcttggacaatgcgaaatggacatatgtgggtggctttactgaagataaacagaaagtgagaagacgtggaacagcttcatggttaagagaatgtgtgctgcagcttggcccaacatttatcaaacttgggcaggtatactctactagatctgatctatttcctcgagaatttgcagatgagcttgctaagatgcatgacagagtaccagccttctcccccgagagagcaaaagagtttattaaaaacgagctgggaattccagttgatattttgtataaggagtttgaagatcaacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="150716" stop="149345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150416" g_stop="150193" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150192" i_stop="150031" i_length="162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.603" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150030" g_stop="149887" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="368" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149886" i_stop="149750" i_length="137">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149749" g_stop="149645" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="473" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E330874" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150416" e_stop="150193"/>
          <exon e_start="150030" e_stop="149887"/>
          <exon e_start="149749" e_stop="149645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAGGTTGGTTTTTCTCTTTTCTTTATTTAATTTGCATTGATATTTGAGGGTAACCTGTTACCAAGTATGGAGCAAAAATCATGCAATGATACTCTCTCATCCCTTCTTCGTCTTCTCGGATTATGTGATTCGATGAGCACTATGTAATGAGCTTTGTACCTGCAGAAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAGATGAGCTTGCTAAGTTGCAGGTATAGCTTACCTTCTTTCTGAGAAAGCGAACATGATCTCCTCAATTACTTGCACAATTGCCTTTGTATTAGTTCACGCTTGAAAATGAATTATGCTAGCATTGACTGTGATTTCGTATTGCTTTGTAATCATTCAGGACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAATTCCAGTTGATATTTTGTATAAGGAGTTTGAAGATCAACCCATT</genome_strand>
        <mrna_strand>TTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAG..................................................................................................................................................................AAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGGTATACTCTACTAGATCTGATCTATTTCCTCGAGAATTTGCAGATGAGCTTGCTAAGATGCAT.........................................................................................................................................GACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAACGAGCTGGGAATTCCAGTTGATATTTTGTATAAGGAGTTTGAAGATCAACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E740043" ref_strand="+" ref_description="SGN-E740043 [LC19DD08]">
      <seq>tcttgctgctcattgatatataccataaatggcggcaatgttggcttctcaaagctgttattgccgcagaggagaactgataaatcatggaagcaatgcaaacaatctaagtttttcaggctcaatctctatcctatttttgtcgaaatttgatagagaatctggtaaatcacctagaaagagtcaccggcttaaagtgcaaatgcaacagacagagtcccctgaaaaagtaggtataaatggtcgtccagttaaaatggtacctacaagtgaagtgacaaagagaattgcaccatctgctaatggttccacggttgttaatggttccacacagagaatcaatggaacaaatctagctaagcgtgttgctactccacttcctgcaaagaaacaaaaatctaaagaacttctgcctgctgaagatctaaaggttttaccttcagatgaaggtttcagctgggctaatgagaactataattccatccaaagaagtatagatgtgtggtcctttgtcctttcgctgcgggtgcgtgttttcttggacaatgcgaaatggacatatgtgggtggctttactgaagataaacagaaagtgagaagacgtggaacagcttcatggttaaagagaatgtgtgctgcagcttggcccaacatttatcaaacttgggcagttatcctctactagatctgatctatttcctcgagaatttgtaaataagcttgctaatttgcaggacagaataccacccttctcccccgagagagcaaaagagtttattaaaaaggagctgggaatttccagttgatatttttgcaaaaggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="151067" stop="149361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150767" g_stop="150193" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="589" r_length="575" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150192" i_stop="150031" i_length="162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.603" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150030" g_stop="149887" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="734" r_length="145" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="149886" i_stop="149750" i_length="137">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="149749" g_stop="149661" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="825" r_length="91" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E740043" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150767" e_stop="150193"/>
          <exon e_start="150030" e_stop="149887"/>
          <exon e_start="149749" e_stop="149661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAAGTAGGTATAAATGGTCGTCCAGTTAAAATGGTACCTACAAGTGAAGTGACAAAGAGAATTGCACCATCTGCTAATGGTTCCACGGTTGTTAATGGTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAGGTTGGTTTTTCTCTTTTCTTTATTTAATTTGCATTGATATTTGAGGGTAACCTGTTACCAAGTATGGAGCAAAAATCATGCAATGATACTCTCTCATCCCTTCTTCGTCTTCTCGGATTATGTGATTCGATGAGCACTATGTAATGAGCTTTGTACCTGCAGAAAGTGAGAAGACGTGGAACAGCTTCATGGTT-AAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAGATGAGCTTGCTAAGTTGCAGGTATAGCTTACCTTCTTTCTGAGAAAGCGAACATGATCTCCTCAATTACTTGCACAATTGCCTTTGTATTAGTTCACGCTTGAAAATGAATTATGCTAGCATTGACTGTGATTTCGTATTGCTTTGTAATCATTCAGGACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAA-TTCCAGTTGATA-TTTTGTATAAGGAGTT</genome_strand>
        <mrna_strand>GATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAAGTAGGTATAAATGGTCGTCCAGTTAAAATGGTACCTACAAGTGAAGTGACAAAGAGAATTGCACCATCTGCTAATGGTTCCACGGTTGTTAATGGTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAG..................................................................................................................................................................AAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAAATAAGCTTGCTAATTTGCAG.........................................................................................................................................GACAGAATACCACCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAATTTCCAGTTGATATTTTTGCAAAAGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E394125" ref_strand="+" ref_description="SGN-E394125 [TUS-40-N3]">
      <seq>gttccacacagagaatcaatggaacaaatctagctaagcgtgttgctactccacttcctgcaaagaaacaaaaatctaaagaacttctgcctgctgaagatctaaaggttttaccttcagatgaaggtttcagctgggctaatgagaactataattccatccaaagaagtatagatgtgtggtcctttgtcctttcgctgcgggtgcgtgttttcttggacaatgcgaaatggacatatgtgggtggctttactgaagataaacagaaagtgagaagacgtggaacagcttcatggttaagagaatgtgtgctgcagcttggcccaacatttatcaaacttgggcagttatcctctactagatctgatcaatttcctccagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="150758" stop="149611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150458" g_stop="150193" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150192" i_stop="150031" i_length="162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.603" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150030" g_stop="149911" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="386" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E394125" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150458" e_stop="150193"/>
          <exon e_start="150030" e_stop="149911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAGGTTGGTTTTTCTCTTTTCTTTATTTAATTTGCATTGATATTTGAGGGTAACCTGTTACCAAGTATGGAGCAAAAATCATGCAATGATACTCTCTCATCCCTTCTTCGTCTTCTCGGATTATGTGATTCGATGAGCACTATGTAATGAGCTTTGTACCTGCAGAAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTT</genome_strand>
        <mrna_strand>GTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAG..................................................................................................................................................................AAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCAATTTCCTCCAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E701497" ref_strand="+" ref_description="SGN-E701497 [FA16AE11]">
      <seq>accttattactactaaagaattttcataagaaggaaagaaaaatcggaactttatgatattgaattagttaactgaaaagaaacagaaatataatagtgagttgccaagagtgcacgccaagtgtttgttcattttacacctttctttaaagcaatagaagagcaaattaagtgacctaccaatttgtttgtggtccacaagaatttggttaaagattgattcacaatttaaagagagttctggttttgattcttgttgttgtgctaagcttcttcttcttgctgctcattgatatataccataaatggcggcaatgttggcttctcaaagctgttattgccgcagaggagaactgataaatcatggaagcaatgcaaacaatctaagtttttcaggctcaatctctatcctatttttgtcgaaatttgatagagaatctggtaaatcacctagaaagagtcaccggcttaaagtgcaaatgcaacagacagagtcccctgaaaaagtaggtataaatggtcgtccagttaaaatggtacctacaagtgaagtgacaaagagaattgcaccatctgctaatggttccacggttgttaatggttccacacagagaatcaatggaacaaatctagctaagcgtgttgctactccacttcctgcaaagaaacaaaaatctaaagaacttctgcctgctgaagatctaaaggttttaccttcagatgaaggtttcagctgggctaatgagaactataattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="152163" stop="149999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151863" g_stop="151573" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151572" i_stop="150768" i_length="805">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150767" g_stop="150299" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="760" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E701497" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151863" e_stop="151573"/>
          <exon e_start="150767" e_stop="150299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTAGTACTACTAAAGAATTTTCATAAGAAGGAAAGAAAAATTGGAACTTTATGATATTGAATTAGTTAACTGAAAAGAAACAGAAATATAATAGTGAGTTGCCAAGAGTGCACGCCAAGTGTTTGTTCATTTTACACCTTTCTTTAAAGCAATAGAAGAGCAAATTAAGTGACCTACCAATTTGTTTGTGGTCCACAAGAATTTGGTTAAAGATTGATTCACAATTTAAAGAGAGTTCTGGTTTTGATTCTTGTTGTTGTGCTAAGCTTCTTCTTCTTGCTGCTCATTGTAAGTGATATTGCTCTCTTAAAAGTGTTATCTTTTGAACTCTAATGCATATTTTTAGCAAGTGGGTTGGGAAAAGTTTCGACCTTTTTTCTTCTTAGAATTGCTATGATCGGATTTGTGTGAAGAACTTTAGAGTGATAGTCCAAAATTGAGTTTTTTTTCCCTATTTTGTTGTTAACAGAACCTATTATTCCCTTTTTCTTGTCTATGTTTGTATAGTCTGCTGTTTTTGATCAAAGAAAGAACTTGCTTATTCTGGTAAGTGTACGTGAGGTTTACAGTTCGATAGAATGTTCCTGTATAGAGGAATGGATATAGGGGTTACGAAATTGAATCAGACTGTGAGACTGAAGAGTAGTTAATTGACTACTAGCTTGACTGAATGAAATTAGTTCCTGGAGATGGGGGTTGATGAATTTGAACATGTAACGGGAAGAAAATTTCCATCTAGCTGTGACTGTTTGAGCAAATTTGTGTGATCAGTTAAAGATAGTTGGGAAAGAGTAATGGTTATAAAGGAGGCTAGTGATTAGGTAATGAAGTAAATTTTGGGTCTTTACATGACAAAATTTATCACTGGCATAGTTGGGCAGTAGTACTAGTATCTCTCCTTCAGATTGCTCGGAAAATGTAAAATGTTTTAATGGCTACGATGTACAACTTTTTTGTATAAATACATTGGTTATGTTTACTTGATTCTTGATATGCAATAGCTATTTCTTATCTACCAGCAGTGGAAGAGTTGAAATTTGTCTGTTGCTGGCTCTAATAAACTTTTTTGATCTGTTTATTGGCTCATGTTCAGGATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAAGTAGGTATAAATGGTCGTCCAGTTAAAATGGTACCTACAAGTGAAGTGACAAAGAGAATTGCACCATCTGCTAATGGTTCCACGGTTGTTAATGGTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCAT</genome_strand>
        <mrna_strand>ACCTTATTACTACTAAAGAATTTTCATAAGAAGGAAAGAAAAATCGGAACTTTATGATATTGAATTAGTTAACTGAAAAGAAACAGAAATATAATAGTGAGTTGCCAAGAGTGCACGCCAAGTGTTTGTTCATTTTACACCTTTCTTTAAAGCAATAGAAGAGCAAATTAAGTGACCTACCAATTTGTTTGTGGTCCACAAGAATTTGGTTAAAGATTGATTCACAATTTAAAGAGAGTTCTGGTTTTGATTCTTGTTGTTGTGCTAAGCTTCTTCTTCTTGCTGCTCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAAGTAGGTATAAATGGTCGTCCAGTTAAAATGGTACCTACAAGTGAAGTGACAAAGAGAATTGCACCATCTGCTAATGGTTCCACGGTTGTTAATGGTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RK6qBt/sgn_ests_tomato_potato" ref_id="SGN-E329665" ref_strand="+" ref_description="SGN-E329665 [cTOD-3-H17]">
      <seq>ttaactgaaaagaaacagaaatataatagtgagttgccaagagtgcacgccaagtgtttgttcattttacacctttctttaaagcaatagaagagcaaattaagtgacctaccaatttgtttgtggtccacaagaatttggttaaagattgattcacaatttaaagagagttctggttttgattcttgttgttgtgctaagcttcttcttcttgctgctcattgatatataccataaatggcggcaatgttggcttctcaaagctgttattgccgcagaggagaactgataaatcatggaagcaatgcaaacaatctaagtttttcaggctcaatctctatcctatttttgtcgaaatttgatagagaatctggtaaatcacctagaaagagtcaccggcttaaagtgcaaatgcaacagacagagtcccctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0069G15-DMoCG/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C07HBa0069G15.1" temp_strand="-" temp_description="C07HBa0069G15.1  AC217525.1 htgs_phase:1 submitted_to_sgn_as:gi|167900494|gb|AC217525.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0069G15, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces">
        <position start="152095" stop="150253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151795" g_stop="151573" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="151572" i_stop="150768" i_length="805">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150767" g_stop="150553" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="438" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0069G15.1" gen_strand="-" ref_id="SGN-E329665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0069G15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151795" e_stop="151573"/>
          <exon e_start="150767" e_stop="150553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTGAAAAGAAACAGAAATATAATAGTGAGTTGCCAAGAGTGCACGCCAAGTGTTTGTTCATTTTACACCTTTCTTTAAAGCAATAGAAGAGCAAATTAAGTGACCTACCAATTTGTTTGTGGTCCACAAGAATTTGGTTAAAGATTGATTCACAATTTAAAGAGAGTTCTGGTTTTGATTCTTGTTGTTGTGCTAAGCTTCTTCTTCTTGCTGCTCATTGTAAGTGATATTGCTCTCTTAAAAGTGTTATCTTTTGAACTCTAATGCATATTTTTAGCAAGTGGGTTGGGAAAAGTTTCGACCTTTTTTCTTCTTAGAATTGCTATGATCGGATTTGTGTGAAGAACTTTAGAGTGATAGTCCAAAATTGAGTTTTTTTTCCCTATTTTGTTGTTAACAGAACCTATTATTCCCTTTTTCTTGTCTATGTTTGTATAGTCTGCTGTTTTTGATCAAAGAAAGAACTTGCTTATTCTGGTAAGTGTACGTGAGGTTTACAGTTCGATAGAATGTTCCTGTATAGAGGAATGGATATAGGGGTTACGAAATTGAATCAGACTGTGAGACTGAAGAGTAGTTAATTGACTACTAGCTTGACTGAATGAAATTAGTTCCTGGAGATGGGGGTTGATGAATTTGAACATGTAACGGGAAGAAAATTTCCATCTAGCTGTGACTGTTTGAGCAAATTTGTGTGATCAGTTAAAGATAGTTGGGAAAGAGTAATGGTTATAAAGGAGGCTAGTGATTAGGTAATGAAGTAAATTTTGGGTCTTTACATGACAAAATTTATCACTGGCATAGTTGGGCAGTAGTACTAGTATCTCTCCTTCAGATTGCTCGGAAAATGTAAAATGTTTTAATGGCTACGATGTACAACTTTTTTGTATAAATACATTGGTTATGTTTACTTGATTCTTGATATGCAATAGCTATTTCTTATCTACCAGCAGTGGAAGAGTTGAAATTTGTCTGTTGCTGGCTCTAATAAACTTTTTTGATCTGTTTATTGGCTCATGTTCAGGATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAA</genome_strand>
        <mrna_strand>TTAACTGAAAAGAAACAGAAATATAATAGTGAGTTGCCAAGAGTGCACGCCAAGTGTTTGTTCATTTTACACCTTTCTTTAAAGCAATAGAAGAGCAAATTAAGTGACCTACCAATTTGTTTGTGGTCCACAAGAATTTGGTTAAAGATTGATTCACAATTTAAAGAGAGTTCTGGTTTTGATTCTTGTTGTTGTGCTAAGCTTCTTCTTCTTGCTGCTCATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>139</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5484" PGL_stop="6115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5484" e_stop="6115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5484" e_stop="6115" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5484" stop="6115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248489" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATGTGCTGAGCCAGATCCCTCGAAGAATTTGATGAAGCCAATTACCTAAAACAGTAGATTGTTGGTCTGACGATTACTTTGTTTTAGAACCTGTTTATGTTGATTTTTTAAAGTGCTCTTAAGCTAGCTCTCAAGTTTCTTAAGTAAATTAAGAAGTGTTTATAAACTATGTTGCACGGACCCTTCAAAAATGACTACATGTACGGGTCAGATACTCTAAAAGTAGTGCATTTTGTAGAATCTGAATGGGTGTGGCAAGAATTTCGGAGAGTCCAAGCAACCTGGTTTTTTTAAGCACTTGGTTTAAGCTAAAATGCTAAAAATATATGAAAAGCCACAAGTTAGAGTTTCTTACTTTAGACTTTTGGCTTATAAGTTAAAAAAACGAAAAGCAATTGAATCAAGCTTAGTTTTGGATGGATGTGCATGTCTCATTTTGATCATTCATAGCTTAGGGTGCTTGCATCCTATCTTATTGAAAGTTGAAGTGGTGCTTACTTGTTTGTGCAGGAACAACAGTCCTATAGTACTTTCTTTCTTTTTCTATTTTCTCTATCTTTACTGTCACTTAAAATATTTTGTTTTGGTAATCAAGATCTATTTTGTTTATTATCTCTCATGTTATTAGT</gDNA_template>
            <first_frame> N  M  C  *  A  R  S  L  E  E  F  D  E  A  N  Y  L  K  Q  *  I  V  G  L  T  I  T  L  F  *  N  L  F  M  L  I  F  *  S  A  L  K  L  A  L  K  F  L  K  *  I  K  K  C  L  *  T  M  L  H  G  P  F  K  N  D  Y  M  Y  G  S  D  T  L  K  V  V  H  F  V  E  S  E  W  V  W  Q  E  F  R  R  V  Q  A  T  W  F  F  *  A  L  G  L  S  *  N  A  K  N  I  *  K  A  T  S  *  S  F  L  L  *  T  F  G  L  *  V  K  K  T  K  S  N  *  I  K  L  S  F  G  W  M  C  M  S  H  F  D  H  S  *  L  R  V  L  A  S  Y  L  I  E  S  *  S  G  A  Y  L  F  V  Q  E  Q  Q  S  Y  S  T  F  F  L  F  L  F  S  L  S  L  L  S  L  K  I  F  C  F  G  N  Q  D  L  F  C  L  L  S  L  M  L  L   </first_frame>
            <second_frame>  I  C  A  E  P  D  P  S  K  N  L  M  K  P  I  T  *  N  S  R  L  L  V  *  R  L  L  C  F  R  T  C  L  C  *  F  F  K  V  L  L  S  *  L  S  S  F  L  S  K  L  R  S  V  Y  K  L  C  C  T  D  P  S  K  M  T  T  C  T  G  Q  I  L  *  K  *  C  I  L  *  N  L  N  G  C  G  K  N  F  G  E  S  K  Q  P  G  F  F  K  H  L  V  *  A  K  M  L  K  I  Y  E  K  P  Q  V  R  V  S  Y  F  R  L  L  A  Y  K  L  K  K  R  K  A  I  E  S  S  L  V  L  D  G  C  A  C  L  I  L  I  I  H  S  L  G  C  L  H  P  I  L  L  K  V  E  V  V  L  T  C  L  C  R  N  N  S  P  I  V  L  S  F  F  F  Y  F  L  Y  L  Y  C  H  L  K  Y  F  V  L  V  I  K  I  Y  F  V  Y  Y  L  S  C  Y  *  </second_frame>
            <third_frame>   Y  V  L  S  Q  I  P  R  R  I  *  *  S  Q  L  P  K  T  V  D  C  W  S  D  D  Y  F  V  L  E  P  V  Y  V  D  F  L  K  C  S  *  A  S  S  Q  V  S  *  V  N  *  E  V  F  I  N  Y  V  A  R  T  L  Q  K  *  L  H  V  R  V  R  Y  S  K  S  S  A  F  C  R  I  *  M  G  V  A  R  I  S  E  S  P  S  N  L  V  F  L  S  T  W  F  K  L  K  C  *  K  Y  M  K  S  H  K  L  E  F  L  T  L  D  F  W  L  I  S  *  K  N  E  K  Q  L  N  Q  A  *  F  W  M  D  V  H  V  S  F  *  S  F  I  A  *  G  A  C  I  L  S  Y  *  K  L  K  W  C  L  L  V  C  A  G  T  T  V  L  *  Y  F  L  S  F  S  I  F  S  I  F  T  V  T  *  N  I  L  F  W  *  S  R  S  I  L  F  I  I  S  H  V  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5794" stop="6114"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMLKIYEKPQVRVSYFRLLAYKLKKRKAIESSLVLDGCACLILIIHSLGCLHPILLKVEVVLTCLCRNNSPIVLSFFFYFLYLYCHLKYFVLVIKIYFVYYLSCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11376" PGL_stop="7055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11376" e_stop="11014"/>
            <exon e_start="7769" e_stop="7055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11376" e_stop="11014" e_length="363"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.937">
            <gDNA_intron_boundary i_start="11013" i_stop="7770" i_length="3244"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="7769" e_stop="7055" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11376" stop="11014"/>
              <exon start="7769" stop="7694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11014"/>
              <exon start="7769" stop="7695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11297" stop="11014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11283" stop="11014"/>
              <exon start="7769" stop="7558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7461" stop="7055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGGAGTACCATACTCTCTCCTTATGTAGCTAAGTTAACTCACACTTGCAGCCTCTACACAACCGTTGAGCAAATATCCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG : GCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTTGTTTCGGAATCAAAAACTCCAGCAAGTCTTAGGATGATTGATATCAACCAATGTATGGGGAAAAAAAAAACGCTTAGGTAAAAAGCTTGATTGGAACTGTAGTGAGGAGATTTCAATTTTATGACTTCTACATGTGGAATTTTATTTAGAAAAACCTCCCTACAACATTCTTAGATGAACAAGTAGATTGATTTA</gDNA_template>
            <first_frame> I  G  S  T  I  L  S  P  Y  V  A  K  L  T  H  T  C  S  L  Y  T  T  V  E  Q  I  S  F  S  T  L  L  *  L  S  S  L  S  V  P  C  F  F  F  C  *  W  R  S  S  T  V  I  S  V  D  D  Q  D  F  I  F  I  N  F  L  Y  L  G  C  K  L  F  W  I  C  S  *  P  F  S  F  L  L  I  L  V  A  R  R  V  Y  I  R  G  K  Q  I  W  V  D  V  F  L  K  F  H  L  M  V  *  L  I  I  F  A  P  V  S  H  L  :  A  N  G  S  R  *  R  K  G  *  E  I  D  *  *  S  R  K  *  *  R  R  K  D  P  S  T  E  E  E  R  K  A  N  K  I  T  Q  R  *  H  *  *  R  S  S  *  D  D  *  R  G  G  *  F  *  A  W  N  S  K  L  G  D  Q  W  E  Q  E  E  T  E  Y  S  G  E  R  K  A  *  F  S  K  R  G  K  W  *  W  N  N  *  *  I  Q  Y  C  F  P  S  *  A  E  K  Q  A  S  P  C  C  R  S  W  C  *  V  Q  L  T  T  T  L  F  L  L  H  C  K  S  P  S  R  F  G  T  C  I  H  *  P  C  G  H  K  D  *  *  F  C  T  I  S  S  *  D  P  S  K  L  N  L  S  H  D  E  N  V  F  S  Y  Q  Q  V  C  F  G  I  K  N  S  S  K  S  *  D  D  *  Y  Q  P  M  Y  G  E  K  K  N  A  *  V  K  S  L  I  G  T  V  V  R  R  F  Q  F  Y  D  F  Y  M  W  N  F  I  *  K  N  L  P  T  T  F  L  D  E  Q  V  D  *  F  </first_frame>
            <second_frame>  L  G  V  P  Y  S  L  L  M  *  L  S  *  L  T  L  A  A  S  T  Q  P  L  S  K  Y  P  F  P  L  F  F  S  S  P  L  S  L  F  H  V  S  F  S  A  D  G  G  A  L  L  S  S  Q  L  T  T  K  T  S  F  L  L  T  F  C  I  W  V  A  S  Y  S  G  S  V  L  D  P  F  R  F  C  *  F  *  W  L  G  G  Y  I  F  E  V  N  K  S  G  S  T  C  S  *  S  F  I  S  W  F  D  *  L  F  L  L  Q  *  V  I  W :   Q  M  G  R  G  R  G  K  G  K  K  L  T  D  D  P  G  S  D  E  E  E  K  I  P  P  Q  K  R  R  G  R  P  T  K  S  L  K  D  D  I  D  E  E  A  V  E  M  I  E  E  E  D  D  S  E  L  G  I  Q  N  L  E  I  N  G  N  K  R  R  R  N  T  R  V  K  E  K  H  D  S  V  K  E  E  N  G  N  G  T  T  D  E  S  N  T  A  S  R  H  R  R  K  N  K  P  R  R  A  A  E  A  G  V  K  C  N  *  P  P  L  C  F  C  Y  T  V  N  P  P  L  V  L  V  L  A  Y  I  D  L  V  V  I  K  T  S  N  F  V  P  F  L  L  E  I  P  P  S  *  I  S  L  M  M  R  M  C  F  P  I  S  K  F  V  S  E  S  K  T  P  A  S  L  R  M  I  D  I  N  Q  C  M  G  K  K  K  T  L  R  *  K  A  *  L  E  L  *  *  G  D  F  N  F  M  T  S  T  C  G  I  L  F  R  K  T  S  L  Q  H  S  *  M  N  K  *  I  D  L </second_frame>
            <third_frame>   W  E  Y  H  T  L  S  L  C  S  *  V  N  S  H  L  Q  P  L  H  N  R  *  A  N  I  L  F  H  S  S  L  A  L  L  S  L  C  S  M  F  L  F  L  L  M  E  E  L  Y  C  H  L  S  *  R  P  R  L  H  F  Y  *  L  S  V  F  G  L  Q  A  I  L  D  L  F  L  T  L  F  V  F  A  D  F  S  G  *  E  G  I  Y  S  R  *  T  N  L  G  R  R  V  L  E  V  S  S  H  G  L  T  D  Y  F  C  S  S  E  S  F   : G  K  W  V  E  V  E  E  R  V  R  N  *  L  M  I  Q  E  V  M  K  K  K  R  S  L  H  R  R  G  E  E  G  Q  Q  N  H  S  K  M  T  L  M  K  K  Q  L  R  *  L  K  R  R  M  I  L  S  L  E  F  K  T  W  R  S  M  G  T  R  G  D  G  I  L  G  *  K  K  S  M  I  Q  *  K  R  K  M  V  M  E  Q  L  M  N  P  I  L  L  P  V  I  G  G  K  T  S  L  A  V  L  Q  K  L  V  L  S  A  T  D  H  H  F  V  S  V  T  L  *  I  P  L  S  F  W  Y  L  H  T  L  T  L  W  S  *  R  L  V  I  L  Y  H  F  F  L  R  S  L  Q  A  K  S  L  S  *  *  E  C  V  F  L  S  A  S  L  F  R  N  Q  K  L  Q  Q  V  L  G  *  L  I  S  T  N  V  W  G  K  K  K  R  L  G  K  K  L  D  W  N  C  S  E  E  I  S  I  L  *  L  L  H  V  E  F  Y  L  E  K  P  P  Y  N  I  L  R  *  T  S  R  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11021" stop="11014"/>
                    <exon start="7769" stop="7415"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIWQMGRGRGKGKKLTDDPGSDEEEKIPPQKRRGRPTKSLKDDIDEEAVEMIEEEDDSELGIQNLEINGNKRRRNTRVKEKHDSVKEENGNGTTDESNTASRHRRKNKPRRAAEAGVKCN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11336" stop="11124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLAASTQPLSKYPFPLFFSSPLSLFHVSFSADGGALLSSQLTTKTSFLLTFCIWVASYSGSVLDPFRFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11297" e_stop="11014"/>
            <exon e_start="7772" e_stop="7055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.779" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11297" e_stop="11014" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.779">
            <gDNA_intron_boundary i_start="11013" i_stop="7773" i_length="3241"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="7772" e_stop="7055" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11297" stop="11014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11295" stop="11014"/>
              <exon start="7772" stop="7362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11280" stop="11014"/>
              <exon start="7772" stop="7601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11233" stop="11014"/>
              <exon start="7772" stop="7283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7461" stop="7055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG : CAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTTGTTTCGGAATCAAAAACTCCAGCAAGTCTTAGGATGATTGATATCAACCAATGTATGGGGAAAAAAAAAACGCTTAGGTAAAAAGCTTGATTGGAACTGTAGTGAGGAGATTTCAATTTTATGACTTCTACATGTGGAATTTTATTTAGAAAAACCTCCCTACAACATTCTTAGATGAACAAGTAGATTGATTTA</gDNA_template>
            <first_frame> P  F  P  L  F  F  S  S  P  L  S  L  F  H  V  S  F  S  A  D  G  G  A  L  L  S  S  Q  L  T  T  K  T  S  F  L  L  T  F  C  I  W  V  A  S  Y  S  G  S  V  L  D  P  F  R  F  C  *  F  *  W  L  G  G  Y  I  F  E  V  N  K  S  G  S  T  C  S  *  S  F  I  S  W  F  D  *  L  F  L  L  Q  *  V  I  C :   R  Q  M  G  R  G  R  G  K  G  K  K  L  T  D  D  P  G  S  D  E  E  E  K  I  P  P  Q  K  R  R  G  R  P  T  K  S  L  K  D  D  I  D  E  E  A  V  E  M  I  E  E  E  D  D  S  E  L  G  I  Q  N  L  E  I  N  G  N  K  R  R  R  N  T  R  V  K  E  K  H  D  S  V  K  E  E  N  G  N  G  T  T  D  E  S  N  T  A  S  R  H  R  R  K  N  K  P  R  R  A  A  E  A  G  V  K  C  N  *  P  P  L  C  F  C  Y  T  V  N  P  P  L  V  L  V  L  A  Y  I  D  L  V  V  I  K  T  S  N  F  V  P  F  L  L  E  I  P  P  S  *  I  S  L  M  M  R  M  C  F  P  I  S  K  F  V  S  E  S  K  T  P  A  S  L  R  M  I  D  I  N  Q  C  M  G  K  K  K  T  L  R  *  K  A  *  L  E  L  *  *  G  D  F  N  F  M  T  S  T  C  G  I  L  F  R  K  T  S  L  Q  H  S  *  M  N  K  *  I  D  L </first_frame>
            <second_frame>  L  F  H  S  S  L  A  L  L  S  L  C  S  M  F  L  F  L  L  M  E  E  L  Y  C  H  L  S  *  R  P  R  L  H  F  Y  *  L  S  V  F  G  L  Q  A  I  L  D  L  F  L  T  L  F  V  F  A  D  F  S  G  *  E  G  I  Y  S  R  *  T  N  L  G  R  R  V  L  E  V  S  S  H  G  L  T  D  Y  F  C  S  S  E  S  F   : A  G  K  W  V  E  V  E  E  R  V  R  N  *  L  M  I  Q  E  V  M  K  K  K  R  S  L  H  R  R  G  E  E  G  Q  Q  N  H  S  K  M  T  L  M  K  K  Q  L  R  *  L  K  R  R  M  I  L  S  L  E  F  K  T  W  R  S  M  G  T  R  G  D  G  I  L  G  *  K  K  S  M  I  Q  *  K  R  K  M  V  M  E  Q  L  M  N  P  I  L  L  P  V  I  G  G  K  T  S  L  A  V  L  Q  K  L  V  L  S  A  T  D  H  H  F  V  S  V  T  L  *  I  P  L  S  F  W  Y  L  H  T  L  T  L  W  S  *  R  L  V  I  L  Y  H  F  F  L  R  S  L  Q  A  K  S  L  S  *  *  E  C  V  F  L  S  A  S  L  F  R  N  Q  K  L  Q  Q  V  L  G  *  L  I  S  T  N  V  W  G  K  K  K  R  L  G  K  K  L  D  W  N  C  S  E  E  I  S  I  L  *  L  L  H  V  E  F  Y  L  E  K  P  P  Y  N  I  L  R  *  T  S  R  L  I   </second_frame>
            <third_frame>   F  S  T  L  L  *  L  S  S  L  S  V  P  C  F  F  F  C  *  W  R  S  S  T  V  I  S  V  D  D  Q  D  F  I  F  I  N  F  L  Y  L  G  C  K  L  F  W  I  C  S  *  P  F  S  F  L  L  I  L  V  A  R  R  V  Y  I  R  G  K  Q  I  W  V  D  V  F  L  K  F  H  L  M  V  *  L  I  I  F  A  P  V  S  H  L  :  Q  A  N  G  S  R  *  R  K  G  *  E  I  D  *  *  S  R  K  *  *  R  R  K  D  P  S  T  E  E  E  R  K  A  N  K  I  T  Q  R  *  H  *  *  R  S  S  *  D  D  *  R  G  G  *  F  *  A  W  N  S  K  L  G  D  Q  W  E  Q  E  E  T  E  Y  S  G  E  R  K  A  *  F  S  K  R  G  K  W  *  W  N  N  *  *  I  Q  Y  C  F  P  S  *  A  E  K  Q  A  S  P  C  C  R  S  W  C  *  V  Q  L  T  T  T  L  F  L  L  H  C  K  S  P  S  R  F  G  T  C  I  H  *  P  C  G  H  K  D  *  *  F  C  T  I  S  S  *  D  P  S  K  L  N  L  S  H  D  E  N  V  F  S  Y  Q  Q  V  C  F  G  I  K  N  S  S  K  S  *  D  D  *  Y  Q  P  M  Y  G  E  K  K  N  A  *  V  K  S  L  I  G  T  V  V  R  R  F  Q  F  Y  D  F  Y  M  W  N  F  I  *  K  N  L  P  T  T  F  L  D  E  Q  V  D  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11021" stop="11014"/>
                    <exon start="7772" stop="7415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VICRQMGRGRGKGKKLTDDPGSDEEEKIPPQKRRGRPTKSLKDDIDEEAVEMIEEEDDSELGIQNLEINGNKRRRNTRVKEKHDSVKEENGNGTTDESNTASRHRRKNKPRRAAEAGVKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11297" e_stop="11014"/>
            <exon e_start="7780" e_stop="7055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11297" e_stop="11014" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11013" i_stop="7781" i_length="3233"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="7780" e_stop="7055" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11297" stop="11014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11065" stop="11014"/>
              <exon start="7780" stop="7250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11065" stop="11014"/>
              <exon start="7780" stop="7260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7749" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7461" stop="7055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTTCCACTCTTCTTTAGCTCTCCTCTCTCTCTGTTCCATGTTTCTTTTTCTGCTGATGGAGGAGCTCTACTGTCATCTCAGTTGACGACCAAGACTTCATTTTTATTAACTTTCTGTATTTGGGTTGCAAGCTATTCTGGATCTGTTCTTGACCCTTTTCGTTTTTGCTGATTTTAGTGGCTAGGAGGGTATATATTCGAGGTAAACAAATCTGGGTCGACGTGTTCTTGAAGTTTCATCTCATGGTTTGACTGATTATTTTTGCTCCAGTGAGTCATTTG : ATGTTTAGCAGGCAAATGGGTCGAGGTAGAGGAAAGGGTAAGAAATTGACTGATGATCCAGGAAGTGATGAAGAAGAAAAGATCCCTCCACAGAAGAGGAGAGGAAGGCCAACAAAATCACTCAAAGATGACATTGATGAAGAAGCAGTTGAGATGATTGAAGAGGAGGATGATTCTGAGCTTGGAATTCAAAACTTGGAGATCAATGGGAACAAGAGGAGACGGAATACTCGGGTGAAAGAAAAGCATGATTCAGTAAAAGAGGAAAATGGTAATGGAACAACTGATGAATCCAATACTGCTTCCCGTCATAGGCGGAAAAACAAGCCTCGCCGTGCTGCAGAAGCTGGTGTTAAGTGCAACTGACCACCACTTTGTTTCTGTTACACTGTAAATCCCCCTCTCGTTTTGGTACTTGCATACATTGACCTTGTGGTCATAAAGACTAGTAATTTTGTACCATTTCTTCTTGAGATCCCTCCAAGCTAAATCTCTCTCATGATGAGAATGTGTTTTCCTATCAGCAAGTTTGTTTCGGAATCAAAAACTCCAGCAAGTCTTAGGATGATTGATATCAACCAATGTATGGGGAAAAAAAAAACGCTTAGGTAAAAAGCTTGATTGGAACTGTAGTGAGGAGATTTCAATTTTATGACTTCTACATGTGGAATTTTATTTAGAAAAACCTCCCTACAACATTCTTAGATGAACAAGTAGATTGATTTA</gDNA_template>
            <first_frame> P  F  P  L  F  F  S  S  P  L  S  L  F  H  V  S  F  S  A  D  G  G  A  L  L  S  S  Q  L  T  T  K  T  S  F  L  L  T  F  C  I  W  V  A  S  Y  S  G  S  V  L  D  P  F  R  F  C  *  F  *  W  L  G  G  Y  I  F  E  V  N  K  S  G  S  T  C  S  *  S  F  I  S  W  F  D  *  L  F  L  L  Q  *  V  I  * :   C  L  A  G  K  W  V  E  V  E  E  R  V  R  N  *  L  M  I  Q  E  V  M  K  K  K  R  S  L  H  R  R  G  E  E  G  Q  Q  N  H  S  K  M  T  L  M  K  K  Q  L  R  *  L  K  R  R  M  I  L  S  L  E  F  K  T  W  R  S  M  G  T  R  G  D  G  I  L  G  *  K  K  S  M  I  Q  *  K  R  K  M  V  M  E  Q  L  M  N  P  I  L  L  P  V  I  G  G  K  T  S  L  A  V  L  Q  K  L  V  L  S  A  T  D  H  H  F  V  S  V  T  L  *  I  P  L  S  F  W  Y  L  H  T  L  T  L  W  S  *  R  L  V  I  L  Y  H  F  F  L  R  S  L  Q  A  K  S  L  S  *  *  E  C  V  F  L  S  A  S  L  F  R  N  Q  K  L  Q  Q  V  L  G  *  L  I  S  T  N  V  W  G  K  K  K  R  L  G  K  K  L  D  W  N  C  S  E  E  I  S  I  L  *  L  L  H  V  E  F  Y  L  E  K  P  P  Y  N  I  L  R  *  T  S  R  L  I   </first_frame>
            <second_frame>  L  F  H  S  S  L  A  L  L  S  L  C  S  M  F  L  F  L  L  M  E  E  L  Y  C  H  L  S  *  R  P  R  L  H  F  Y  *  L  S  V  F  G  L  Q  A  I  L  D  L  F  L  T  L  F  V  F  A  D  F  S  G  *  E  G  I  Y  S  R  *  T  N  L  G  R  R  V  L  E  V  S  S  H  G  L  T  D  Y  F  C  S  S  E  S  F   : D  V  *  Q  A  N  G  S  R  *  R  K  G  *  E  I  D  *  *  S  R  K  *  *  R  R  K  D  P  S  T  E  E  E  R  K  A  N  K  I  T  Q  R  *  H  *  *  R  S  S  *  D  D  *  R  G  G  *  F  *  A  W  N  S  K  L  G  D  Q  W  E  Q  E  E  T  E  Y  S  G  E  R  K  A  *  F  S  K  R  G  K  W  *  W  N  N  *  *  I  Q  Y  C  F  P  S  *  A  E  K  Q  A  S  P  C  C  R  S  W  C  *  V  Q  L  T  T  T  L  F  L  L  H  C  K  S  P  S  R  F  G  T  C  I  H  *  P  C  G  H  K  D  *  *  F  C  T  I  S  S  *  D  P  S  K  L  N  L  S  H  D  E  N  V  F  S  Y  Q  Q  V  C  F  G  I  K  N  S  S  K  S  *  D  D  *  Y  Q  P  M  Y  G  E  K  K  N  A  *  V  K  S  L  I  G  T  V  V  R  R  F  Q  F  Y  D  F  Y  M  W  N  F  I  *  K  N  L  P  T  T  F  L  D  E  Q  V  D  *  F  </second_frame>
            <third_frame>   F  S  T  L  L  *  L  S  S  L  S  V  P  C  F  F  F  C  *  W  R  S  S  T  V  I  S  V  D  D  Q  D  F  I  F  I  N  F  L  Y  L  G  C  K  L  F  W  I  C  S  *  P  F  S  F  L  L  I  L  V  A  R  R  V  Y  I  R  G  K  Q  I  W  V  D  V  F  L  K  F  H  L  M  V  *  L  I  I  F  A  P  V  S  H  L  :  M  F  S  R  Q  M  G  R  G  R  G  K  G  K  K  L  T  D  D  P  G  S  D  E  E  E  K  I  P  P  Q  K  R  R  G  R  P  T  K  S  L  K  D  D  I  D  E  E  A  V  E  M  I  E  E  E  D  D  S  E  L  G  I  Q  N  L  E  I  N  G  N  K  R  R  R  N  T  R  V  K  E  K  H  D  S  V  K  E  E  N  G  N  G  T  T  D  E  S  N  T  A  S  R  H  R  R  K  N  K  P  R  R  A  A  E  A  G  V  K  C  N  *  P  P  L  C  F  C  Y  T  V  N  P  P  L  V  L  V  L  A  Y  I  D  L  V  V  I  K  T  S  N  F  V  P  F  L  L  E  I  P  P  S  *  I  S  L  M  M  R  M  C  F  P  I  S  K  F  V  S  E  S  K  T  P  A  S  L  R  M  I  D  I  N  Q  C  M  G  K  K  K  T  L  R  *  K  A  *  L  E  L  *  *  G  D  F  N  F  M  T  S  T  C  G  I  L  F  R  K  T  S  L  Q  H  S  *  M  N  K  *  I  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11043" stop="11014"/>
                    <exon start="7780" stop="7415"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIFAPVSHLMFSRQMGRGRGKGKKLTDDPGSDEEEKIPPQKRRGRPTKSLKDDIDEEAVEMIEEEDDSELGIQNLEINGNKRRRNTRVKEKHDSVKEENGNGTTDESNTASRHRRKNKPRRAAEAGVKCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24748" PGL_stop="32385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24748" e_stop="25292"/>
            <exon e_start="25385" e_stop="25465"/>
            <exon e_start="25566" e_stop="25829"/>
            <exon e_start="26263" e_stop="26394"/>
            <exon e_start="26486" e_stop="26659"/>
            <exon e_start="26775" e_stop="27004"/>
            <exon e_start="27180" e_stop="27297"/>
            <exon e_start="29000" e_stop="29131"/>
            <exon e_start="29218" e_stop="29352"/>
            <exon e_start="29692" e_stop="29898"/>
            <exon e_start="31885" e_stop="32199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.805" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.536" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.932" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="24748" e_stop="25292" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.805">
            <gDNA_intron_boundary i_start="25293" i_stop="25384" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25385" e_stop="25465" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25566" e_stop="25829" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26263" e_stop="26394" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26486" e_stop="26659" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.536" acc_prob="0.919">
            <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="26775" e_stop="27004" e_length="230"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27180" e_stop="27297" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.799">
            <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29000" e_stop="29131" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29218" e_stop="29352" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.848">
            <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29692" e_stop="29898" e_length="207"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986"/>
          </intron>
          <exon e_serial="11" e_score="0.981">
            <gDNA_exon_boundary e_start="31885" e_stop="32199" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25292"/>
              <exon start="25385" stop="25428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25032" stop="25292"/>
              <exon start="25385" stop="25465"/>
              <exon start="25566" stop="25815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25440" stop="25465"/>
              <exon start="25566" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25465"/>
              <exon start="25566" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="26815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25743" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26300" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26542" stop="26659"/>
              <exon start="26775" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27217" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27231" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29898"/>
              <exon start="31885" stop="32125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27231" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29898"/>
              <exon start="31885" stop="32104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27261" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29898"/>
              <exon start="31885" stop="32123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29747" stop="29898"/>
              <exon start="31885" stop="32199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAG : GGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTCTTTGGGTGATGATGCACTTATCTATTCACTCAATGAG : ACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG : GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG : ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG : GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGG : AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG : CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG : GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG : GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG : GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATAT</gDNA_template>
            <first_frame> R  W  K  I  P  R  E  V  I  H  I  *  V  Y  *  R  D  W  P  A  M  I  I  F  P  K  I  M  G  H  L  G  L  L  V  H  F  L  L  P  L  L  Y  Q  H  S  S  P  Y  Y  L  W  G  R  R  R  Q  N  K  E  V  F  R  F  K  L  A  V  S  Q  V  L  Q  C  A  M  L  N  Q  P  D  *  L  K  F  P  G  K  G  L  Q  L  *  Q  L  Y  L  S  S  L  V  K  N  I  P  L  I  A  V  L  D  L  E  S  *  L  A  G  T  L  L  L  Q  V  M  E  G  S  L  R  N  F  T  W  G  S  I  S  G  S  L  M  D  K  Y  L  I  A  L  A  T  L  P  L  V  L  L  V  W  V  M  M  W  T  L  V  L  L  S  S  Q  N  L  V  R  S  G  S  L  P  F  R :   D  V  S  G  R  I  L  P  L  L  P  F  M  L  L  W  V  M  M  H  L  S  I  H  S  M  R :   L  K  Y  L  H  *  Y  V  M  P  S  N  *  K  K  W  L  L  L  V  R  A  *  K  P  S  R  M  S  S  I  S  R  M  T  R  R  Q  Q  I  P  Q  I  L  T  A  G  G  C  R  L  S  Q  K  L  K  S  W  V  E  I  V  L  F  R  Q  D  C  L  S  K  K  I  L  L  *  S  C  I  Q  V  A  V  Q  A  C  L  R :   V  L  *  *  L  M  A  T  L  *  P  L  Q  L  L  *  *  L  *  F  Q  N  L  E  P  V  M  S  I  W  L  T  F  L  *  L  T  F  L  S  W  L  L  R :   L  *  C  *  L  Q  V  L  V  L  V  M  A  Q  P  S  H  *  R  T  H  L  T  K  S  *  R  G  P  R  E  M  L  Q  F  *  N  L  L  *  W  L  Q  F  Q  P  F  *  I  V  F  G  M  V  L  *  R  R :   L  R  R  R  Q  V  L  P  R  N  F  S  T  S  P  L  T  V  D  W  L  L  W  K  V  A  G  L  E  L  G  V  *  R  N  N  C  G  I  S  L  Y  S  K  R  *  G  L  C  L  E  E  I  S  V  S  C  F  A  V  V  L  L  Y  Q  G  I  L  K  D  L  S  T  F  V  W   : E  L  Q  L  V  K  G  M  V  *  Q  R  H  L  L  E  L  L  F  L  S  G  M  I  L  L  S  G  V  L  V  H  L  F  L  V  A  T  *  S :   L  L  L  G  K  K  E  V  T  E  *  L  I  S  L  C  L  G  E  K  *  L  L  V  D  A  A  *  L  L  V  T  S  T  M  R  K  K  L  M  R  F  I  R :   L  M  R  Q  A  C  A  G  S  T  L  V  T  L  E  G  F  I  L  M  G  A  L  K  L  L  I  E  R  R  I  L  L  S  F  S  T  G  S  I  S  H  L  E  R :   L  R  Q  H  F  Y  Q  A  I  T  W  R  A  S  W  C  T  Q  T  P  S  I  I  I  V  *  L  *  L  S  L  H  A  R  C  L  R  N  G  P  K  K  M  A  S  S  T  K  I  F  P  N  C  V  T  K  *  N  Q  S  M  R  S  S  N  H  F  Q  R :   *  Q  K  L  L  D  W  T  S  L  S  F  L  P  R  S  S  *  Y  Q  S  L  G  L  L  S  L  D  W  *  L  L  L  *  N  *  N  G  N  L  *  R  L  D  T  R  M  S  *  K  S  Y  I  S  E  S  Y  F  L  A  E  *  H  F  I  *  Q  L  Y  V  P  L  A  S  *  S  S  Q  V  V  L  L  K  F  N  Y  T  S  P  F  A  V  A  S  M  L  K  Q  L  Y  A  S  F  H   </first_frame>
            <second_frame>  D  G  R  F  R  G  K  *  S  I  Y  E  Y  T  E  E  T  G  Q  L  *  L  Y  F  Q  K  L  W  V  I  W  D  C  W  C  I  F  Y  C  H  Y  Y  T  N  I  P  L  H  I  T  Y  G  E  E  E  G  K  T  K  R  C  S  G  S  S  W  R  *  A  R  S  C  N  A  Q  C  *  I  S  Q  I  S  *  S  S  L  G  R  G  Y  N  C  S  S  S  I  *  A  V  L  *  K  T  F  L  L  S  L  S  W  I  *  K  A  S  *  Q  G  L  C  Y  C  K  *  W  K  E  V  *  E  T  S  L  G  G  V  S  V  G  V  L  W  T  S  I  *  S  H  L  Q  L  C  L  W  S  Y  *  F  G  S  *  C  G  H  S  C  C  Y  L  R  R  I  S  C  G  V  A  H  C  L  S   : G  M  F  P  A  E  Y  Y  R  C  Y  H  L  C  F  F  G  *  *  C  T  Y  L  F  T  Q  *   : D  S  S  I  Y  I  N  M  *  C  Q  A  T  E  K  S  G  F  C  *  F  E  P  E  N  H  Q  E  C  H  L  F  R  G  *  R  D  G  N  R  F  H  K  Y  *  Q  L  E  G  V  V  F  L  R  S  *  K  A  G  *  K  *  S  Y  S  G  K  I  A  C  Q  R  R  Y  C  C  D  H  V  Y  K  W  Q  Y  R  L  A  *   : G  C  Y  D  N  S  W  Q  H  C  S  H  C  S  C  C  D  D  C  D  S  K  T  W  N  Q  *  C  L  F  G  L  P  S  F  S  S  R  F  *  V  G  C  *   : D  C  N  A  D  C  R  C  L  Y  W  L  W  L  S  P  H  I  D  G  H  I  *  Q  S  H  E  G  D  Q  G  R  C  Y  S  F  K  T  Y  F  N  G  C  S  S  S  H  S  R  S  C  S  G  W  C  Y  E  E   : G  *  G  E  G  R  F  C  Q  E  T  F  P  H  R  L  *  P  S  I  G  C  Y  G  R  *  L  V  W  S  L  G  S  R  E  T  I  V  G  Y  H  Y  I  Q  K  G  E  G  C  A  W  R  R  Y  P  F  H  A  L  R  W  C  S  S  I  R  G  Y  S  K  I  Y  Q  H  L  Y  G  :  S  S  N  W  S  R  V  W  F  D  R  D  I  C  W  S  C  F  F  *  V  G  *  S  F  C  R  A  C  W  S  T  S  S  L  L  L  H  K   : A  Y  Y  L  G  R  R  R  L  Q  N  S  *  *  A  Y  A  S  G  R  S  S  C  W  W  M  Q  H  N  C  W  L  L  Q  Q  *  G  K  N  *  *  G  L  *   : G  *  *  D  R  H  A  L  V  L  H  W  *  H  W  K  V  S  S  *  W  V  H  *  N  Y  *  *  K  E  G  Y  C  *  A  S  A  R  G  V  Y  L  T  W  K   : G  *  G  S  T  S  I  K  Q  L  R  G  E  H  H  G  V  R  R  P  L  P  *  L  L  C  S  F  S  C  P  F  T  P  G  A  *  E  M  G  P  R  K  W  H  P  A  Q  R  F  F  R  T  V  *  Q  S  R  I  S  Q  *  D  Q  A  I  T  F  K   : G  S  K  S  C  *  I  G  Q  V  *  A  S  C  Q  D  Q  V  N  T  R  V  L  D  S  *  V  W  I  G  N  C  C  S  E  I  E  T  G  T  S  E  G  S  I  Q  E  *  V  R  K  V  I  S  V  N  H  T  S  L  P  S  N  T  S  F  S  S  F  M  C  L  L  P  V  N  H  L  K  L  S  C  *  S  S  I  T  R  L  L  L  L  L  R  Q  C  *  S  S  C  M  H  L  S  I  </second_frame>
            <third_frame>   M  E  D  S  E  G  S  N  P  Y  M  S  I  L  K  R  L  A  S  Y  D  Y  I  S  K  N  Y  G  S  S  G  I  A  G  A  F  F  I  A  I  I  I  P  T  F  L  S  I  L  L  M  G  K  K  K  A  K  Q  R  G  V  P  V  Q  V  G  G  E  P  G  L  A  M  R  N  A  K  S  A  R  L  V  E  V  P  W  E  G  A  T  T  V  A  A  L  F  E  Q  S  C  K  K  H  S  S  Y  R  C  L  G  S  R  K  L  V  S  R  D  F  V  T  A  S  D  G  R  K  F  E  K  L  H  L  G  E  Y  Q  W  E  S  Y  G  Q  V  F  D  R  T  C  N  F  A  S  G  L  I  S  L  G  H  D  V  D  T  R  A  A  I  F  A  E  S  R  A  E  W  L  I  A  F  Q  :  G  C  F  R  Q  N  I  T  V  V  T  I  Y  A  S  L  G  D  D  A  L  I  Y  S  L  N  E  :  T  Q  V  S  T  L  I  C  D  A  K  Q  L  K  K  V  A  S  V  S  S  S  L  K  T  I  K  N  V  I  Y  F  E  D  D  E  T  A  T  D  S  T  N  I  D  S  W  R  V  S  S  F  S  E  V  E  K  L  G  R  N  S  P  I  Q  A  R  L  P  V  K  E  D  I  A  V  I  M  Y  T  S  G  S  T  G  L  P  K  :  G  V  M  I  T  H  G  N  I  V  A  T  A  A  A  V  M  T  V  I  P  K  L  G  T  S  D  V  Y  L  A  Y  L  P  L  A  H  V  F  E  L  A  A  E  :  T  V  M  L  T  A  G  A  C  I  G  Y  G  S  A  L  T  L  T  D  T  S  N  K  V  M  K  G  T  K  G  D  A  T  V  L  K  P  T  L  M  A  A  V  P  A  I  L  D  R  V  R  D  G  V  M  K  K  :  V  E  E  K  A  G  S  A  K  K  L  F  H  I  A  F  N  R  R  L  A  A  M  E  G  S  W  F  G  A  W  G  L  E  K  Q  L  W  D  I  I  I  F  K  K  V  R  A  V  L  G  G  D  I  R  F  M  L  C  G  G  A  P  L  S  G  D  T  Q  R  F  I  N  I  C  M  G :   A  P  I  G  Q  G  Y  G  L  T  E  T  F  A  G  A  A  F  S  E  W  D  D  P  S  V  G  R  V  G  P  P  L  P  C  C  Y  I  K  :  L  I  T  W  E  E  G  G  Y  R  I  V  D  K  P  M  P  R  G  E  V  V  V  G  G  C  S  I  T  A  G  Y  F  N  N  E  E  K  T  N  E  V  Y  K  :  V  D  E  T  G  M  R  W  F  Y  T  G  D  I  G  R  F  H  P  D  G  C  I  E  I  I  D  R  K  K  D  I  V  K  L  Q  H  G  E  Y  I  S  L  G  K  :  V  E  A  A  L  L  S  S  N  Y  V  E  S  I  M  V  Y  A  D  P  F  H  N  Y  C  V  A  L  V  V  P  S  R  P  V  L  E  K  W  A  Q  E  N  G  I  Q  H  K  D  F  S  E  L  C  D  K  V  E  S  V  N  E  I  K  Q  S  L  S  K  :  V  A  K  A  A  R  L  D  K  F  E  L  P  A  K  I  K  L  I  P  E  S  W  T  P  E  S  G  L  V  T  A  A  L  K  L  K  R  E  P  L  K  A  R  Y  K  N  E  L  E  K  L  Y  Q  *  I  I  L  P  C  R  V  T  L  H  L  A  A  L  C  A  S  C  Q  L  I  I  S  S  C  P  V  E  V  Q  L  H  V  S  F  C  C  C  V  N  V  K  A  V  V  C  I  F  P  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24750" stop="25292"/>
                    <exon start="25385" stop="25465"/>
                    <exon start="25566" stop="25829"/>
                    <exon start="26263" stop="26394"/>
                    <exon start="26486" stop="26659"/>
                    <exon start="26775" stop="27004"/>
                    <exon start="27180" stop="27297"/>
                    <exon start="29000" stop="29131"/>
                    <exon start="29218" stop="29352"/>
                    <exon start="29692" stop="29898"/>
                    <exon start="31885" stop="32049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2178</number_coding_nucleotides>
                  <number_encoded_amino_acids>726</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEDSEGSNPYMSILKRLASYDYISKNYGSSGIAGAFFIAIIIPTFLSILLMGKKKAKQRGVPVQVGGEPGLAMRNAKSARLVEVPWEGATTVAALFEQSCKKHSSYRCLGSRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQVFDRTCNFASGLISLGHDVDTRAAIFAESRAEWLIAFQGCFRQNITVVTIYASLGDDALIYSLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETATDSTNIDSWRVSSFSEVEKLGRNSPIQARLPVKEDIAVIMYTSGSTGLPKGVMITHGNIVATAAAVMTVIPKLGTSDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLMAAVPAILDRVRDGVMKKVEEKAGSAKKLFHIAFNRRLAAMEGSWFGAWGLEKQLWDIIIFKKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGAAFSEWDDPSVGRVGPPLPCCYIKLITWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEEKTNEVYKVDETGMRWFYTGDIGRFHPDGCIEIIDRKKDIVKLQHGEYISLGKVEAALLSSNYVESIMVYADPFHNYCVALVVPSRPVLEKWAQENGIQHKDFSELCDKVESVNEIKQSLSKVAKAARLDKFELPAKIKLIPESWTPESGLVTAALKLKREPLKARYKNELEKLYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24748" e_stop="25292"/>
            <exon e_start="25385" e_stop="25465"/>
            <exon e_start="25566" e_stop="25829"/>
            <exon e_start="26263" e_stop="26394"/>
            <exon e_start="26486" e_stop="26659"/>
            <exon e_start="26775" e_stop="27004"/>
            <exon e_start="27180" e_stop="27297"/>
            <exon e_start="29000" e_stop="29131"/>
            <exon e_start="29218" e_stop="29352"/>
            <exon e_start="29692" e_stop="29898"/>
            <exon e_start="31885" e_stop="32086"/>
            <exon e_start="32139" e_stop="32332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.805" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.536" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.932" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.975"/>
          <exon-only e_score="0.845"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="24748" e_stop="25292" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.805">
            <gDNA_intron_boundary i_start="25293" i_stop="25384" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25385" e_stop="25465" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25566" e_stop="25829" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26263" e_stop="26394" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26486" e_stop="26659" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.536" acc_prob="0.919">
            <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="26775" e_stop="27004" e_length="230"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27005" i_stop="27179" i_length="175"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27180" e_stop="27297" e_length="118"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.799">
            <gDNA_intron_boundary i_start="27298" i_stop="28999" i_length="1702"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29000" e_stop="29131" e_length="132"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.991">
            <gDNA_intron_boundary i_start="29132" i_stop="29217" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29218" e_stop="29352" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.848">
            <gDNA_intron_boundary i_start="29353" i_stop="29691" i_length="339"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="29692" e_stop="29898" e_length="207"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986"/>
          </intron>
          <exon e_serial="11" e_score="0.975">
            <gDNA_exon_boundary e_start="31885" e_stop="32086" e_length="202"/>
          </exon>
          <intron i_serial="11" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32087" i_stop="32138" i_length="52"/>
          </intron>
          <exon e_serial="12" e_score="0.845">
            <gDNA_exon_boundary e_start="32139" e_stop="32332" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25292"/>
              <exon start="25385" stop="25428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25032" stop="25292"/>
              <exon start="25385" stop="25465"/>
              <exon start="25566" stop="25815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25440" stop="25465"/>
              <exon start="25566" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25444" stop="25465"/>
              <exon start="25566" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="26868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="26815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25743" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26300" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26542" stop="26659"/>
              <exon start="26775" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26873" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26876" stop="27004"/>
              <exon start="27180" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27217" stop="27297"/>
              <exon start="29000" stop="29131"/>
              <exon start="29218" stop="29352"/>
              <exon start="29692" stop="29825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29263" stop="29352"/>
              <exon start="29692" stop="29898"/>
              <exon start="31885" stop="32086"/>
              <exon start="32139" stop="32332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599500" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29328" stop="29352"/>
              <exon start="29692" stop="29898"/>
              <exon start="31885" stop="32086"/>
              <exon start="32139" stop="32332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591033" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAG : GGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTCTTTGGGTGATGATGCACTTATCTATTCACTCAATGAG : ACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG : GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG : ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG : GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTGGCTGCTATGGAAGGTAGCTGGTTTGGAGCTTGGGGTCTAGAGAAACAATTGTGGGATATCATTATATTCAAAAAGGTGAGGGCTGTGCTTGGAGGAGATATCCGTTTCATGCTTTGCGGTGGTGCTCCTCTATCAGGGGATACTCAAAGATTTATCAACATTTGTATGGG : AGCTCCAATTGGTCAAGGGTATGGTTTGACAGAGACATTTGCTGGAGCTGCTTTTTCTGAGTGGGATGATCCTTCTGTCGGGCGTGTTGGTCCACCTCTTCCTTGTTGCTACATAAAG : CTTATTACTTGGGAAGAAGGAGGTTACAGAATAGTTGATAAGCCTATGCCTCGGGGAGAAGTAGTTGTTGGTGGATGCAGCATAACTGCTGGTTACTTCAACAATGAGGAAAAAACTAATGAGGTTTATAAG : GTTGATGAGACAGGCATGCGCTGGTTCTACACTGGTGACATTGGAAGGTTTCATCCTGATGGGTGCATTGAAATTATTGATAGAAAGAAGGATATTGTTAAGCTTCAGCACGGGGAGTATATCTCACTTGGAAAG : GTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG : GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAG : ATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTGTTCTCGCCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</gDNA_template>
            <first_frame> R  W  K  I  P  R  E  V  I  H  I  *  V  Y  *  R  D  W  P  A  M  I  I  F  P  K  I  M  G  H  L  G  L  L  V  H  F  L  L  P  L  L  Y  Q  H  S  S  P  Y  Y  L  W  G  R  R  R  Q  N  K  E  V  F  R  F  K  L  A  V  S  Q  V  L  Q  C  A  M  L  N  Q  P  D  *  L  K  F  P  G  K  G  L  Q  L  *  Q  L  Y  L  S  S  L  V  K  N  I  P  L  I  A  V  L  D  L  E  S  *  L  A  G  T  L  L  L  Q  V  M  E  G  S  L  R  N  F  T  W  G  S  I  S  G  S  L  M  D  K  Y  L  I  A  L  A  T  L  P  L  V  L  L  V  W  V  M  M  W  T  L  V  L  L  S  S  Q  N  L  V  R  S  G  S  L  P  F  R :   D  V  S  G  R  I  L  P  L  L  P  F  M  L  L  W  V  M  M  H  L  S  I  H  S  M  R :   L  K  Y  L  H  *  Y  V  M  P  S  N  *  K  K  W  L  L  L  V  R  A  *  K  P  S  R  M  S  S  I  S  R  M  T  R  R  Q  Q  I  P  Q  I  L  T  A  G  G  C  R  L  S  Q  K  L  K  S  W  V  E  I  V  L  F  R  Q  D  C  L  S  K  K  I  L  L  *  S  C  I  Q  V  A  V  Q  A  C  L  R :   V  L  *  *  L  M  A  T  L  *  P  L  Q  L  L  *  *  L  *  F  Q  N  L  E  P  V  M  S  I  W  L  T  F  L  *  L  T  F  L  S  W  L  L  R :   L  *  C  *  L  Q  V  L  V  L  V  M  A  Q  P  S  H  *  R  T  H  L  T  K  S  *  R  G  P  R  E  M  L  Q  F  *  N  L  L  *  W  L  Q  F  Q  P  F  *  I  V  F  G  M  V  L  *  R  R :   L  R  R  R  Q  V  L  P  R  N  F  S  T  S  P  L  T  V  D  W  L  L  W  K  V  A  G  L  E  L  G  V  *  R  N  N  C  G  I  S  L  Y  S  K  R  *  G  L  C  L  E  E  I  S  V  S  C  F  A  V  V  L  L  Y  Q  G  I  L  K  D  L  S  T  F  V  W   : E  L  Q  L  V  K  G  M  V  *  Q  R  H  L  L  E  L  L  F  L  S  G  M  I  L  L  S  G  V  L  V  H  L  F  L  V  A  T  *  S :   L  L  L  G  K  K  E  V  T  E  *  L  I  S  L  C  L  G  E  K  *  L  L  V  D  A  A  *  L  L  V  T  S  T  M  R  K  K  L  M  R  F  I  R :   L  M  R  Q  A  C  A  G  S  T  L  V  T  L  E  G  F  I  L  M  G  A  L  K  L  L  I  E  R  R  I  L  L  S  F  S  T  G  S  I  S  H  L  E  R :   L  R  Q  H  F  Y  Q  A  I  T  W  R  A  S  W  C  T  Q  T  P  S  I  I  I  V  *  L  *  L  S  L  H  A  R  C  L  R  N  G  P  K  K  M  A  S  S  T  K  I  F  P  N  C  V  T  K  *  N  Q  S  M  R  S  S  N  H  F  Q  R :   *  Q  K  L  L  D  W  T  S  L  S  F  L  P  R  S  S  *  Y  Q  S  L  G  L  L  S  L  D  W  *  L  L  L  *  N  *  N  G  N  L  *  R  L  D  T  R  M  S  *  K  S  Y  I  S  E  S  Y  F  L  A  E  *  H  F  I  *  Q  :  I  T  R  L  L  L  L  L  R  Q  C  *  S  S  C  M  H  L  S  I  W  L  S  W  L  S  S  E  V  *  *  I  L  F  S  P  R  Q  L  Q  L  F  I  L  L  S  F  T  Y  G  G  I  Q  S  V  S  L  F  V  N  H  F  S  D   </first_frame>
            <second_frame>  D  G  R  F  R  G  K  *  S  I  Y  E  Y  T  E  E  T  G  Q  L  *  L  Y  F  Q  K  L  W  V  I  W  D  C  W  C  I  F  Y  C  H  Y  Y  T  N  I  P  L  H  I  T  Y  G  E  E  E  G  K  T  K  R  C  S  G  S  S  W  R  *  A  R  S  C  N  A  Q  C  *  I  S  Q  I  S  *  S  S  L  G  R  G  Y  N  C  S  S  S  I  *  A  V  L  *  K  T  F  L  L  S  L  S  W  I  *  K  A  S  *  Q  G  L  C  Y  C  K  *  W  K  E  V  *  E  T  S  L  G  G  V  S  V  G  V  L  W  T  S  I  *  S  H  L  Q  L  C  L  W  S  Y  *  F  G  S  *  C  G  H  S  C  C  Y  L  R  R  I  S  C  G  V  A  H  C  L  S   : G  M  F  P  A  E  Y  Y  R  C  Y  H  L  C  F  F  G  *  *  C  T  Y  L  F  T  Q  *   : D  S  S  I  Y  I  N  M  *  C  Q  A  T  E  K  S  G  F  C  *  F  E  P  E  N  H  Q  E  C  H  L  F  R  G  *  R  D  G  N  R  F  H  K  Y  *  Q  L  E  G  V  V  F  L  R  S  *  K  A  G  *  K  *  S  Y  S  G  K  I  A  C  Q  R  R  Y  C  C  D  H  V  Y  K  W  Q  Y  R  L  A  *   : G  C  Y  D  N  S  W  Q  H  C  S  H  C  S  C  C  D  D  C  D  S  K  T  W  N  Q  *  C  L  F  G  L  P  S  F  S  S  R  F  *  V  G  C  *   : D  C  N  A  D  C  R  C  L  Y  W  L  W  L  S  P  H  I  D  G  H  I  *  Q  S  H  E  G  D  Q  G  R  C  Y  S  F  K  T  Y  F  N  G  C  S  S  S  H  S  R  S  C  S  G  W  C  Y  E  E   : G  *  G  E  G  R  F  C  Q  E  T  F  P  H  R  L  *  P  S  I  G  C  Y  G  R  *  L  V  W  S  L  G  S  R  E  T  I  V  G  Y  H  Y  I  Q  K  G  E  G  C  A  W  R  R  Y  P  F  H  A  L  R  W  C  S  S  I  R  G  Y  S  K  I  Y  Q  H  L  Y  G  :  S  S  N  W  S  R  V  W  F  D  R  D  I  C  W  S  C  F  F  *  V  G  *  S  F  C  R  A  C  W  S  T  S  S  L  L  L  H  K   : A  Y  Y  L  G  R  R  R  L  Q  N  S  *  *  A  Y  A  S  G  R  S  S  C  W  W  M  Q  H  N  C  W  L  L  Q  Q  *  G  K  N  *  *  G  L  *   : G  *  *  D  R  H  A  L  V  L  H  W  *  H  W  K  V  S  S  *  W  V  H  *  N  Y  *  *  K  E  G  Y  C  *  A  S  A  R  G  V  Y  L  T  W  K   : G  *  G  S  T  S  I  K  Q  L  R  G  E  H  H  G  V  R  R  P  L  P  *  L  L  C  S  F  S  C  P  F  T  P  G  A  *  E  M  G  P  R  K  W  H  P  A  Q  R  F  F  R  T  V  *  Q  S  R  I  S  Q  *  D  Q  A  I  T  F  K   : G  S  K  S  C  *  I  G  Q  V  *  A  S  C  Q  D  Q  V  N  T  R  V  L  D  S  *  V  W  I  G  N  C  C  S  E  I  E  T  G  T  S  E  G  S  I  Q  E  *  V  R  K  V  I  S  V  N  H  T  S  L  P  S  N  T  S  F  S  R :   L  H  V  S  F  C  C  C  V  N  V  K  A  V  V  C  I  F  P  Y  G  C  P  G  *  A  A  R  Y  N  R  F  C  S  R  L  A  S  F  S  Y  S  S  Y  *  A  S  H  M  E  V  Y  S  Q  C  L  C  L  L  I  I  S  Q  T  </second_frame>
            <third_frame>   M  E  D  S  E  G  S  N  P  Y  M  S  I  L  K  R  L  A  S  Y  D  Y  I  S  K  N  Y  G  S  S  G  I  A  G  A  F  F  I  A  I  I  I  P  T  F  L  S  I  L  L  M  G  K  K  K  A  K  Q  R  G  V  P  V  Q  V  G  G  E  P  G  L  A  M  R  N  A  K  S  A  R  L  V  E  V  P  W  E  G  A  T  T  V  A  A  L  F  E  Q  S  C  K  K  H  S  S  Y  R  C  L  G  S  R  K  L  V  S  R  D  F  V  T  A  S  D  G  R  K  F  E  K  L  H  L  G  E  Y  Q  W  E  S  Y  G  Q  V  F  D  R  T  C  N  F  A  S  G  L  I  S  L  G  H  D  V  D  T  R  A  A  I  F  A  E  S  R  A  E  W  L  I  A  F  Q  :  G  C  F  R  Q  N  I  T  V  V  T  I  Y  A  S  L  G  D  D  A  L  I  Y  S  L  N  E  :  T  Q  V  S  T  L  I  C  D  A  K  Q  L  K  K  V  A  S  V  S  S  S  L  K  T  I  K  N  V  I  Y  F  E  D  D  E  T  A  T  D  S  T  N  I  D  S  W  R  V  S  S  F  S  E  V  E  K  L  G  R  N  S  P  I  Q  A  R  L  P  V  K  E  D  I  A  V  I  M  Y  T  S  G  S  T  G  L  P  K  :  G  V  M  I  T  H  G  N  I  V  A  T  A  A  A  V  M  T  V  I  P  K  L  G  T  S  D  V  Y  L  A  Y  L  P  L  A  H  V  F  E  L  A  A  E  :  T  V  M  L  T  A  G  A  C  I  G  Y  G  S  A  L  T  L  T  D  T  S  N  K  V  M  K  G  T  K  G  D  A  T  V  L  K  P  T  L  M  A  A  V  P  A  I  L  D  R  V  R  D  G  V  M  K  K  :  V  E  E  K  A  G  S  A  K  K  L  F  H  I  A  F  N  R  R  L  A  A  M  E  G  S  W  F  G  A  W  G  L  E  K  Q  L  W  D  I  I  I  F  K  K  V  R  A  V  L  G  G  D  I  R  F  M  L  C  G  G  A  P  L  S  G  D  T  Q  R  F  I  N  I  C  M  G :   A  P  I  G  Q  G  Y  G  L  T  E  T  F  A  G  A  A  F  S  E  W  D  D  P  S  V  G  R  V  G  P  P  L  P  C  C  Y  I  K  :  L  I  T  W  E  E  G  G  Y  R  I  V  D  K  P  M  P  R  G  E  V  V  V  G  G  C  S  I  T  A  G  Y  F  N  N  E  E  K  T  N  E  V  Y  K  :  V  D  E  T  G  M  R  W  F  Y  T  G  D  I  G  R  F  H  P  D  G  C  I  E  I  I  D  R  K  K  D  I  V  K  L  Q  H  G  E  Y  I  S  L  G  K  :  V  E  A  A  L  L  S  S  N  Y  V  E  S  I  M  V  Y  A  D  P  F  H  N  Y  C  V  A  L  V  V  P  S  R  P  V  L  E  K  W  A  Q  E  N  G  I  Q  H  K  D  F  S  E  L  C  D  K  V  E  S  V  N  E  I  K  Q  S  L  S  K  :  V  A  K  A  A  R  L  D  K  F  E  L  P  A  K  I  K  L  I  P  E  S  W  T  P  E  S  G  L  V  T  A  A  L  K  L  K  R  E  P  L  K  A  R  Y  K  N  E  L  E  K  L  Y  Q  *  I  I  L  P  C  R  V  T  L  H  L  A   : D  Y  T  S  P  F  A  V  A  S  M  L  K  Q  L  Y  A  S  F  H  M  V  V  L  V  K  Q  R  G  I  I  D  F  V  L  A  S  P  A  S  V  I  H  L  I  E  L  H  I  W  R  Y  T  V  S  V  F  V  C  *  S  F  L  R  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24750" stop="25292"/>
                    <exon start="25385" stop="25465"/>
                    <exon start="25566" stop="25829"/>
                    <exon start="26263" stop="26394"/>
                    <exon start="26486" stop="26659"/>
                    <exon start="26775" stop="27004"/>
                    <exon start="27180" stop="27297"/>
                    <exon start="29000" stop="29131"/>
                    <exon start="29218" stop="29352"/>
                    <exon start="29692" stop="29898"/>
                    <exon start="31885" stop="32049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2178</number_coding_nucleotides>
                  <number_encoded_amino_acids>726</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEDSEGSNPYMSILKRLASYDYISKNYGSSGIAGAFFIAIIIPTFLSILLMGKKKAKQRGVPVQVGGEPGLAMRNAKSARLVEVPWEGATTVAALFEQSCKKHSSYRCLGSRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQVFDRTCNFASGLISLGHDVDTRAAIFAESRAEWLIAFQGCFRQNITVVTIYASLGDDALIYSLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETATDSTNIDSWRVSSFSEVEKLGRNSPIQARLPVKEDIAVIMYTSGSTGLPKGVMITHGNIVATAAAVMTVIPKLGTSDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLMAAVPAILDRVRDGVMKKVEEKAGSAKKLFHIAFNRRLAAMEGSWFGAWGLEKQLWDIIIFKKVRAVLGGDIRFMLCGGAPLSGDTQRFINICMGAPIGQGYGLTETFAGAAFSEWDDPSVGRVGPPLPCCYIKLITWEEGGYRIVDKPMPRGEVVVGGCSITAGYFNNEEKTNEVYKVDETGMRWFYTGDIGRFHPDGCIEIIDRKKDIVKLQHGEYISLGKVEAALLSSNYVESIMVYADPFHNYCVALVVPSRPVLEKWAQENGIQHKDFSELCDKVESVNEIKQSLSKVAKAARLDKFELPAKIKLIPESWTPESGLVTAALKLKREPLKARYKNELEKLYQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32050" stop="32086"/>
                    <exon start="32139" stop="32317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILPCRVTLHLADYTSPFAVASMLKQLYASFHMVVLVKQRGIIDFVLASPASVIHLIELHIWRYTVSVFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24748" e_stop="25292"/>
            <exon e_start="25385" e_stop="25465"/>
            <exon e_start="25566" e_stop="25829"/>
            <exon e_start="26263" e_stop="26394"/>
            <exon e_start="26486" e_stop="26659"/>
            <exon e_start="26775" e_stop="26834"/>
            <exon e_start="31972" e_stop="32385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.805" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.536" acc_prob="0.919" e_score="0.960"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="24748" e_stop="25292" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.805">
            <gDNA_intron_boundary i_start="25293" i_stop="25384" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25385" e_stop="25465" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="25466" i_stop="25565" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25566" e_stop="25829" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25830" i_stop="26262" i_length="433"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26263" e_stop="26394" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26395" i_stop="26485" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="26486" e_stop="26659" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.536" acc_prob="0.919">
            <gDNA_intron_boundary i_start="26660" i_stop="26774" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26775" e_stop="26834" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26835" i_stop="31971" i_length="5137"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="31972" e_stop="32385" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25292"/>
              <exon start="25385" stop="25428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24748" stop="25124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25032" stop="25292"/>
              <exon start="25385" stop="25465"/>
              <exon start="25566" stop="25815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25440" stop="25465"/>
              <exon start="25566" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25726" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26659"/>
              <exon start="26775" stop="26815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25743" stop="25829"/>
              <exon start="26263" stop="26394"/>
              <exon start="26486" stop="26607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26554" stop="26659"/>
              <exon start="26775" stop="26834"/>
              <exon start="31972" stop="32385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGGAAGATTCCGAGGGAAGTAATCCATATATGAGTATACTGAAGAGACTGGCCAGCTATGATTATATTTCCAAAAATTATGGGTCATCTGGGATTGCTGGTGCATTTTTTATTGCCATTATTATACCAACATTCCTCTCCATATTACTTATGGGGAAGAAGAAGGCAAAACAAAGAGGTGTTCCGGTTCAAGTTGGCGGTGAGCCAGGTCTTGCAATGCGCAATGCTAAATCAGCCAGATTAGTTGAAGTTCCCTGGGAAGGGGCTACAACTGTAGCAGCTCTATTTGAGCAGTCTTGTAAAAAACATTCCTCTTATCGCTGTCTTGGATCTAGAAAGCTAGTTAGCAGGGACTTTGTTACTGCAAGTGATGGAAGGAAGTTTGAGAAACTTCACTTGGGGGAGTATCAGTGGGAGTCTTATGGACAAGTATTTGATCGCACTTGCAACTTTGCCTCTGGTCTTATTAGTTTGGGTCATGATGTGGACACTCGTGCTGCTATCTTCGCAGAATCTCGTGCGGAGTGGCTCATTGCCTTTCAG : GGATGTTTCCGGCAGAATATTACCGTTGTTACCATTTATGCTTCTTTGGGTGATGATGCACTTATCTATTCACTCAATGAG : ACTCAAGTATCTACATTAATATGTGATGCCAAGCAACTGAAAAAAGTGGCTTCTGTTAGTTCGAGCCTGAAAACCATCAAGAATGTCATCTATTTCGAGGATGACGAGACGGCAACAGATTCCACAAATATTGACAGCTGGAGGGTGTCGTCTTTCTCAGAAGTTGAAAAGCTGGGTAGAAATAGTCCTATTCAGGCAAGATTGCCTGTCAAAGAAGATATTGCTGTGATCATGTATACAAGTGGCAGTACAGGCTTGCCTAAG : GGTGTTATGATAACTCATGGCAACATTGTAGCCACTGCAGCTGCTGTGATGACTGTGATTCCAAAACTTGGAACCAGTGATGTCTATTTGGCTTACCTTCCTTTAGCTCACGTTTTTGAGTTGGCTGCTGAG : ACTGTAATGCTGACTGCAGGTGCTTGTATTGGTTATGGCTCAGCCCTCACATTGACGGACACATCTAACAAAGTCATGAAGGGGACCAAGGGAGATGCTACAGTTTTAAAACCTACTTTAATGGCTGCAGTTCCAGCCATTCTAGATCGTGTTCGGGATGGTGTTATGAAGAAG : GTTGAGGAGAAGGCAGGTTCTGCCAAGAAACTTTTCCACATCGCCTTTAACCGTCGATTG : GTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTGTTCTCGCCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAGGTAAATAAAGTTATTTGATTGCTTTTTCTCTCTATTAATTTCTTAATGTAGCA</gDNA_template>
            <first_frame> R  W  K  I  P  R  E  V  I  H  I  *  V  Y  *  R  D  W  P  A  M  I  I  F  P  K  I  M  G  H  L  G  L  L  V  H  F  L  L  P  L  L  Y  Q  H  S  S  P  Y  Y  L  W  G  R  R  R  Q  N  K  E  V  F  R  F  K  L  A  V  S  Q  V  L  Q  C  A  M  L  N  Q  P  D  *  L  K  F  P  G  K  G  L  Q  L  *  Q  L  Y  L  S  S  L  V  K  N  I  P  L  I  A  V  L  D  L  E  S  *  L  A  G  T  L  L  L  Q  V  M  E  G  S  L  R  N  F  T  W  G  S  I  S  G  S  L  M  D  K  Y  L  I  A  L  A  T  L  P  L  V  L  L  V  W  V  M  M  W  T  L  V  L  L  S  S  Q  N  L  V  R  S  G  S  L  P  F  R :   D  V  S  G  R  I  L  P  L  L  P  F  M  L  L  W  V  M  M  H  L  S  I  H  S  M  R :   L  K  Y  L  H  *  Y  V  M  P  S  N  *  K  K  W  L  L  L  V  R  A  *  K  P  S  R  M  S  S  I  S  R  M  T  R  R  Q  Q  I  P  Q  I  L  T  A  G  G  C  R  L  S  Q  K  L  K  S  W  V  E  I  V  L  F  R  Q  D  C  L  S  K  K  I  L  L  *  S  C  I  Q  V  A  V  Q  A  C  L  R :   V  L  *  *  L  M  A  T  L  *  P  L  Q  L  L  *  *  L  *  F  Q  N  L  E  P  V  M  S  I  W  L  T  F  L  *  L  T  F  L  S  W  L  L  R :   L  *  C  *  L  Q  V  L  V  L  V  M  A  Q  P  S  H  *  R  T  H  L  T  K  S  *  R  G  P  R  E  M  L  Q  F  *  N  L  L  *  W  L  Q  F  Q  P  F  *  I  V  F  G  M  V  L  *  R  R :   L  R  R  R  Q  V  L  P  R  N  F  S  T  S  P  L  T  V  D  W :   *  L  L  L  *  N  *  N  G  N  L  *  R  L  D  T  R  M  S  *  K  S  Y  I  S  E  S  Y  F  L  A  E  *  H  F  I  *  Q  L  Y  V  P  L  A  S  *  S  S  Q  V  V  L  L  K  F  N  Y  T  S  P  F  A  V  A  S  M  L  K  Q  L  Y  A  S  F  H  M  V  V  L  V  K  Q  R  G  I  I  D  F  V  L  A  S  P  A  S  V  I  H  L  I  E  L  H  I  W  R  Y  T  V  S  V  F  V  C  *  S  F  L  R  Q  V  N  K  V  I  *  L  L  F  L  S  I  N  F  L  M  *   </first_frame>
            <second_frame>  D  G  R  F  R  G  K  *  S  I  Y  E  Y  T  E  E  T  G  Q  L  *  L  Y  F  Q  K  L  W  V  I  W  D  C  W  C  I  F  Y  C  H  Y  Y  T  N  I  P  L  H  I  T  Y  G  E  E  E  G  K  T  K  R  C  S  G  S  S  W  R  *  A  R  S  C  N  A  Q  C  *  I  S  Q  I  S  *  S  S  L  G  R  G  Y  N  C  S  S  S  I  *  A  V  L  *  K  T  F  L  L  S  L  S  W  I  *  K  A  S  *  Q  G  L  C  Y  C  K  *  W  K  E  V  *  E  T  S  L  G  G  V  S  V  G  V  L  W  T  S  I  *  S  H  L  Q  L  C  L  W  S  Y  *  F  G  S  *  C  G  H  S  C  C  Y  L  R  R  I  S  C  G  V  A  H  C  L  S   : G  M  F  P  A  E  Y  Y  R  C  Y  H  L  C  F  F  G  *  *  C  T  Y  L  F  T  Q  *   : D  S  S  I  Y  I  N  M  *  C  Q  A  T  E  K  S  G  F  C  *  F  E  P  E  N  H  Q  E  C  H  L  F  R  G  *  R  D  G  N  R  F  H  K  Y  *  Q  L  E  G  V  V  F  L  R  S  *  K  A  G  *  K  *  S  Y  S  G  K  I  A  C  Q  R  R  Y  C  C  D  H  V  Y  K  W  Q  Y  R  L  A  *   : G  C  Y  D  N  S  W  Q  H  C  S  H  C  S  C  C  D  D  C  D  S  K  T  W  N  Q  *  C  L  F  G  L  P  S  F  S  S  R  F  *  V  G  C  *   : D  C  N  A  D  C  R  C  L  Y  W  L  W  L  S  P  H  I  D  G  H  I  *  Q  S  H  E  G  D  Q  G  R  C  Y  S  F  K  T  Y  F  N  G  C  S  S  S  H  S  R  S  C  S  G  W  C  Y  E  E   : G  *  G  E  G  R  F  C  Q  E  T  F  P  H  R  L  *  P  S  I   : G  N  C  C  S  E  I  E  T  G  T  S  E  G  S  I  Q  E  *  V  R  K  V  I  S  V  N  H  T  S  L  P  S  N  T  S  F  S  S  F  M  C  L  L  P  V  N  H  L  K  L  S  C  *  S  S  I  T  R  L  L  L  L  L  R  Q  C  *  S  S  C  M  H  L  S  I  W  L  S  W  L  S  S  E  V  *  *  I  L  F  S  P  R  Q  L  Q  L  F  I  L  L  S  F  T  Y  G  G  I  Q  S  V  S  L  F  V  N  H  F  S  D  R  *  I  K  L  F  D  C  F  F  S  L  L  I  S  *  C  S  </second_frame>
            <third_frame>   M  E  D  S  E  G  S  N  P  Y  M  S  I  L  K  R  L  A  S  Y  D  Y  I  S  K  N  Y  G  S  S  G  I  A  G  A  F  F  I  A  I  I  I  P  T  F  L  S  I  L  L  M  G  K  K  K  A  K  Q  R  G  V  P  V  Q  V  G  G  E  P  G  L  A  M  R  N  A  K  S  A  R  L  V  E  V  P  W  E  G  A  T  T  V  A  A  L  F  E  Q  S  C  K  K  H  S  S  Y  R  C  L  G  S  R  K  L  V  S  R  D  F  V  T  A  S  D  G  R  K  F  E  K  L  H  L  G  E  Y  Q  W  E  S  Y  G  Q  V  F  D  R  T  C  N  F  A  S  G  L  I  S  L  G  H  D  V  D  T  R  A  A  I  F  A  E  S  R  A  E  W  L  I  A  F  Q  :  G  C  F  R  Q  N  I  T  V  V  T  I  Y  A  S  L  G  D  D  A  L  I  Y  S  L  N  E  :  T  Q  V  S  T  L  I  C  D  A  K  Q  L  K  K  V  A  S  V  S  S  S  L  K  T  I  K  N  V  I  Y  F  E  D  D  E  T  A  T  D  S  T  N  I  D  S  W  R  V  S  S  F  S  E  V  E  K  L  G  R  N  S  P  I  Q  A  R  L  P  V  K  E  D  I  A  V  I  M  Y  T  S  G  S  T  G  L  P  K  :  G  V  M  I  T  H  G  N  I  V  A  T  A  A  A  V  M  T  V  I  P  K  L  G  T  S  D  V  Y  L  A  Y  L  P  L  A  H  V  F  E  L  A  A  E  :  T  V  M  L  T  A  G  A  C  I  G  Y  G  S  A  L  T  L  T  D  T  S  N  K  V  M  K  G  T  K  G  D  A  T  V  L  K  P  T  L  M  A  A  V  P  A  I  L  D  R  V  R  D  G  V  M  K  K  :  V  E  E  K  A  G  S  A  K  K  L  F  H  I  A  F  N  R  R  L  :  V  T  A  A  L  K  L  K  R  E  P  L  K  A  R  Y  K  N  E  L  E  K  L  Y  Q  *  I  I  L  P  C  R  V  T  L  H  L  A  A  L  C  A  S  C  Q  L  I  I  S  S  C  P  V  E  V  Q  L  H  V  S  F  C  C  C  V  N  V  K  A  V  V  C  I  F  P  Y  G  C  P  G  *  A  A  R  Y  N  R  F  C  S  R  L  A  S  F  S  Y  S  S  Y  *  A  S  H  M  E  V  Y  S  Q  C  L  C  L  L  I  I  S  Q  T  G  K  *  S  Y  L  I  A  F  S  L  Y  *  F  L  N  V  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24750" stop="25292"/>
                    <exon start="25385" stop="25465"/>
                    <exon start="25566" stop="25829"/>
                    <exon start="26263" stop="26394"/>
                    <exon start="26486" stop="26659"/>
                    <exon start="26775" stop="26834"/>
                    <exon start="31972" stop="32049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEDSEGSNPYMSILKRLASYDYISKNYGSSGIAGAFFIAIIIPTFLSILLMGKKKAKQRGVPVQVGGEPGLAMRNAKSARLVEVPWEGATTVAALFEQSCKKHSSYRCLGSRKLVSRDFVTASDGRKFEKLHLGEYQWESYGQVFDRTCNFASGLISLGHDVDTRAAIFAESRAEWLIAFQGCFRQNITVVTIYASLGDDALIYSLNETQVSTLICDAKQLKKVASVSSSLKTIKNVIYFEDDETATDSTNIDSWRVSSFSEVEKLGRNSPIQARLPVKEDIAVIMYTSGSTGLPKGVMITHGNIVATAAAVMTVIPKLGTSDVYLAYLPLAHVFELAAETVMLTAGACIGYGSALTLTDTSNKVMKGTKGDATVLKPTLMAAVPAILDRVRDGVMKKVEEKAGSAKKLFHIAFNRRLVTAALKLKREPLKARYKNELEKLYQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32111" stop="32317"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQVVLLKFNYTSPFAVASMLKQLYASFHMVVLVKQRGIIDFVLASPASVIHLIELHIWRYTVSVFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="29686" e_stop="29898"/>
            <exon e_start="31885" e_stop="32332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.986"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="29686" e_stop="29898" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29899" i_stop="31884" i_length="1986"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="31885" e_stop="32332" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29686" stop="29898"/>
              <exon start="31885" stop="32332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426933" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29747" stop="29898"/>
              <exon start="31885" stop="32199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACAGGTTGAGGCAGCACTTCTATCAAGCAATTACGTGGAGAGCATCATGGTGTACGCAGACCCCTTCCATAATTATTGTGTAGCTTTAGTTGTCCCTTCACGCCCGGTGCTTGAGAAATGGGCCCAAGAAAATGGCATCCAGCACAAAGATTTTTCCGAACTGTGTGACAAAGTAGAATCAGTCAATGAGATCAAGCAATCACTTTCAAAG : GTAGCAAAAGCTGCTAGATTGGACAAGTTTGAGCTTCCTGCCAAGATCAAGTTAATACCAGAGTCTTGGACTCCTGAGTCTGGATTGGTAACTGCTGCTCTGAAATTGAAACGGGAACCTCTGAAGGCTCGATACAAGAATGAGTTAGAAAAGTTATATCAGTGAATCATACTTCCTTGCCGAGTAACACTTCATTTAGCAGCTTTATGTGCCTCTTGCCAGTTAATCATCTCAAGTTGTCCTGTTGAAGTTCAATTACACGTCTCCTTTTGCTGTTGCGTCAATGTTAAAGCAGTTGTATGCATCTTTCCATATGGTTGTCCTGGTTAAGCAGCGAGGTATAATAGATTTTGTTCTCGCCTCGCCAGCTTCAGTTATTCATCTTATTGAGCTTCACATATGGAGGTATACAGTCAGTGTCTTTGTTTGTTAATCATTTCTCAGACAG</gDNA_template>
            <first_frame> A  Q  V  E  A  A  L  L  S  S  N  Y  V  E  S  I  M  V  Y  A  D  P  F  H  N  Y  C  V  A  L  V  V  P  S  R  P  V  L  E  K  W  A  Q  E  N  G  I  Q  H  K  D  F  S  E  L  C  D  K  V  E  S  V  N  E  I  K  Q  S  L  S  K  :  V  A  K  A  A  R  L  D  K  F  E  L  P  A  K  I  K  L  I  P  E  S  W  T  P  E  S  G  L  V  T  A  A  L  K  L  K  R  E  P  L  K  A  R  Y  K  N  E  L  E  K  L  Y  Q  *  I  I  L  P  C  R  V  T  L  H  L  A  A  L  C  A  S  C  Q  L  I  I  S  S  C  P  V  E  V  Q  L  H  V  S  F  C  C  C  V  N  V  K  A  V  V  C  I  F  P  Y  G  C  P  G  *  A  A  R  Y  N  R  F  C  S  R  L  A  S  F  S  Y  S  S  Y  *  A  S  H  M  E  V  Y  S  Q  C  L  C  L  L  I  I  S  Q  T  </first_frame>
            <second_frame>  H  R  L  R  Q  H  F  Y  Q  A  I  T  W  R  A  S  W  C  T  Q  T  P  S  I  I  I  V  *  L  *  L  S  L  H  A  R  C  L  R  N  G  P  K  K  M  A  S  S  T  K  I  F  P  N  C  V  T  K  *  N  Q  S  M  R  S  S  N  H  F  Q  R :   *  Q  K  L  L  D  W  T  S  L  S  F  L  P  R  S  S  *  Y  Q  S  L  G  L  L  S  L  D  W  *  L  L  L  *  N  *  N  G  N  L  *  R  L  D  T  R  M  S  *  K  S  Y  I  S  E  S  Y  F  L  A  E  *  H  F  I  *  Q  L  Y  V  P  L  A  S  *  S  S  Q  V  V  L  L  K  F  N  Y  T  S  P  F  A  V  A  S  M  L  K  Q  L  Y  A  S  F  H  M  V  V  L  V  K  Q  R  G  I  I  D  F  V  L  A  S  P  A  S  V  I  H  L  I  E  L  H  I  W  R  Y  T  V  S  V  F  V  C  *  S  F  L  R  Q </second_frame>
            <third_frame>   T  G  *  G  S  T  S  I  K  Q  L  R  G  E  H  H  G  V  R  R  P  L  P  *  L  L  C  S  F  S  C  P  F  T  P  G  A  *  E  M  G  P  R  K  W  H  P  A  Q  R  F  F  R  T  V  *  Q  S  R  I  S  Q  *  D  Q  A  I  T  F  K   : G  S  K  S  C  *  I  G  Q  V  *  A  S  C  Q  D  Q  V  N  T  R  V  L  D  S  *  V  W  I  G  N  C  C  S  E  I  E  T  G  T  S  E  G  S  I  Q  E  *  V  R  K  V  I  S  V  N  H  T  S  L  P  S  N  T  S  F  S  S  F  M  C  L  L  P  V  N  H  L  K  L  S  C  *  S  S  I  T  R  L  L  L  L  L  R  Q  C  *  S  S  C  M  H  L  S  I  W  L  S  W  L  S  S  E  V  *  *  I  L  F  S  P  R  Q  L  Q  L  F  I  L  L  S  F  T  Y  G  G  I  Q  S  V  S  L  F  V  N  H  F  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29686" stop="29898"/>
                    <exon start="31885" stop="32049"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQVEAALLSSNYVESIMVYADPFHNYCVALVVPSRPVLEKWAQENGIQHKDFSELCDKVESVNEIKQSLSKVAKAARLDKFELPAKIKLIPESWTPESGLVTAALKLKREPLKARYKNELEKLYQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32111" stop="32317"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQVVLLKFNYTSPFAVASMLKQLYASFHMVVLVKQRGIIDFVLASPASVIHLIELHIWRYTVSVFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="32997" PGL_stop="32601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32997" e_stop="32601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32997" e_stop="32601" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32997" stop="32601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAATGATACAGATTTCTTACACAAGGATTCTACTAGCATGGTACATTGAGCAAATATTACAGACTGGTGAAAACTCTGCTGTCTGTAATGTACAGTAAAGAGCACAAACAACAACAAACTGTTTTTTCAGGTTATCACCTGCTCTGTAGAGCATAGATCAGCAGTTGAAATGAAGACCATTTATGGTGGAAATTACTAACTTGTTGCTCGTCTTTTCTTCTTAATTCTATTATACTGCTATTGCTTTATATTAATTTTCACACGATGCATATAATTTCCAATTTCAAGTATACTATAATTTCATCTATAGTTGACAATTTTCACAACCCTCGTAATGGGCAAGTGTAATAACTAGAGATTCTTTCATATATCTTTATGTATACTTGGTGATTT</gDNA_template>
            <first_frame> G  K  M  I  Q  I  S  Y  T  R  I  L  L  A  W  Y  I  E  Q  I  L  Q  T  G  E  N  S  A  V  C  N  V  Q  *  R  A  Q  T  T  T  N  C  F  F  R  L  S  P  A  L  *  S  I  D  Q  Q  L  K  *  R  P  F  M  V  E  I  T  N  L  L  L  V  F  S  S  *  F  Y  Y  T  A  I  A  L  Y  *  F  S  H  D  A  Y  N  F  Q  F  Q  V  Y  Y  N  F  I  Y  S  *  Q  F  S  Q  P  S  *  W  A  S  V  I  T  R  D  S  F  I  Y  L  Y  V  Y  L  V  I  </first_frame>
            <second_frame>  E  K  *  Y  R  F  L  T  Q  G  F  Y  *  H  G  T  L  S  K  Y  Y  R  L  V  K  T  L  L  S  V  M  Y  S  K  E  H  K  Q  Q  Q  T  V  F  S  G  Y  H  L  L  C  R  A  *  I  S  S  *  N  E  D  H  L  W  W  K  L  L  T  C  C  S  S  F  L  L  N  S  I  I  L  L  L  L  Y  I  N  F  H  T  M  H  I  I  S  N  F  K  Y  T  I  I  S  S  I  V  D  N  F  H  N  P  R  N  G  Q  V  *  *  L  E  I  L  S  Y  I  F  M  Y  T  W  *  F </second_frame>
            <third_frame>   K  N  D  T  D  F  L  H  K  D  S  T  S  M  V  H  *  A  N  I  T  D  W  *  K  L  C  C  L  *  C  T  V  K  S  T  N  N  N  K  L  F  F  Q  V  I  T  C  S  V  E  H  R  S  A  V  E  M  K  T  I  Y  G  G  N  Y  *  L  V  A  R  L  F  F  L  I  L  L  Y  C  Y  C  F  I  L  I  F  T  R  C  I  *  F  P  I  S  S  I  L  *  F  H  L  *  L  T  I  F  T  T  L  V  M  G  K  C  N  N  *  R  F  F  H  I  S  L  C  I  L  G  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32715" PGL_stop="33100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32715" e_stop="33100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="32715" e_stop="33100" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32715" stop="33100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATTATATGCATCGTGTGAAAATTAATATAAAGCAATAGCAGTATAATAGAATTAAGAAGAAAAGACGAGCAACAAGTTAGTAATTTCCACCATAAATGGTCTTCATTTCAACTGCTGATCTATGCTCTACAGAGCAGGTGATAACCTGAAAAAACAGTTTGTTGTTGTTTGTGCTCTTTACTGTACATTACAGACAGCAGAGTTTTCACCAGTCTGTAATATTTGCTCAATGTACCATGCTAGTAGAATCCTTGTGTAAGAAATCTGTATCATTTTTCCTCAGTCGAAGTTGGGCTTGATAAGGCTGGTACTGTTGGAAGAGATGGGCGTAGGAGAAGGTATAGTGCTGGACCCAAAAAAGGGATCACCGACAGCGGAAGAA</gDNA_template>
            <first_frame> G  N  Y  M  H  R  V  K  I  N  I  K  Q  *  Q  Y  N  R  I  K  K  K  R  R  A  T  S  *  *  F  P  P  *  M  V  F  I  S  T  A  D  L  C  S  T  E  Q  V  I  T  *  K  N  S  L  L  L  F  V  L  F  T  V  H  Y  R  Q  Q  S  F  H  Q  S  V  I  F  A  Q  C  T  M  L  V  E  S  L  C  K  K  S  V  S  F  F  L  S  R  S  W  A  *  *  G  W  Y  C  W  K  R  W  A  *  E  K  V  *  C  W  T  Q  K  R  D  H  R  Q  R  K   </first_frame>
            <second_frame>  E  I  I  C  I  V  *  K  L  I  *  S  N  S  S  I  I  E  L  R  R  K  D  E  Q  Q  V  S  N  F  H  H  K  W  S  S  F  Q  L  L  I  Y  A  L  Q  S  R  *  *  P  E  K  T  V  C  C  C  L  C  S  L  L  Y  I  T  D  S  R  V  F  T  S  L  *  Y  L  L  N  V  P  C  *  *  N  P  C  V  R  N  L  Y  H  F  S  S  V  E  V  G  L  D  K  A  G  T  V  G  R  D  G  R  R  R  R  Y  S  A  G  P  K  K  G  I  T  D  S  G  R  </second_frame>
            <third_frame>   K  L  Y  A  S  C  E  N  *  Y  K  A  I  A  V  *  *  N  *  E  E  K  T  S  N  K  L  V  I  S  T  I  N  G  L  H  F  N  C  *  S  M  L  Y  R  A  G  D  N  L  K  K  Q  F  V  V  V  C  A  L  Y  C  T  L  Q  T  A  E  F  S  P  V  C  N  I  C  S  M  Y  H  A  S  R  I  L  V  *  E  I  C  I  I  F  P  Q  S  K  L  G  L  I  R  L  V  L  L  E  E  M  G  V  G  E  G  I  V  L  D  P  K  K  G  S  P  T  A  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35984" PGL_stop="32999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35984" e_stop="35599"/>
            <exon e_start="35154" e_stop="35009"/>
            <exon e_start="34716" e_stop="33855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35984" e_stop="35599" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35154" e_stop="35009" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="34716" e_stop="33855" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35984" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35964" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35890" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35100" stop="35009"/>
              <exon start="34716" stop="34360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34449" stop="33855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34449" stop="34041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACATGTTAGCTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG : TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG : TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTCGTAAGTTTCTCCTTCAATGTGTACATACATATGATGCAACATTCTTTATCATGTTACTATAGATTTAGTAATTGTATCGATTTGGTATTGTTGGTCTTTGGAGTAATGATCAGATTATAGTGCTACCCTCAATTTCCTGCATAAACTGGTAAAGCTTGTGACATTTAAAAGAGCAATCAGTTAACTGGTCCAGAAGGCGGTTATCACACTCTACGAGAATTGCTTCAACATTTCACCAGATGTGAA</gDNA_template>
            <first_frame> S  T  C  *  L  I  P  A  S  S  L  Q  I  S  L  L  Y  Y  F  L  E  I  R  K  L  L  L  E  F  H  *  Q  T  V  T  K  S  R  K  I  H  P  R  L  N  F  *  K  T  Q  S  H  D  L  G  *  R  V  V  F  F  M  Y  V  I  V  R  *  I  F  K  I  N  K  T  H  L  W  K  K  I  *  L  V  L  Q  R  R  M  S  L  V  V  E  V  I  M  E  T  N  G  I  G  R  R  R  L  Y  C  L  A  C  G  L  D  S  C  T  M  F  S  S  L  L  L  T  R  P  R :   *  Q  T  C  I  S  *  K  S  S  L  I  *  K  E  M  M  D  S  V  *  M  K  C  *  W  D  F  G  I  S  W  V  Y  G  H  *  F  T  V  C  C  S  F  L  L  L  E   : V  Q  K  A  A  F  L  F  G  L  F  L  Y  F  H  A  L  V  V  H  M  F  S  F  L  I  L  L  S  G  N  H  H  L  H  L  L  K  K  L  S  F  K  G  Y  L  *  I  C  L  N  L  S  *  Q  Q  G  *  G  I  L  S  F  D  N  Y  V  T  S  L  C  P  Y  N  W  D  G  G  I  C  L  K  *  S  K  N  I  Q  P  S  M  R  L  M  P  K  N  M  G  L  K  F  C  Y  I  *  E  C  *  E  S  S  Y  N  Q  I  T  S  E  V  R  T  K  R  Q  V  K  S  G  S  L  N  G  T  V  L  Y  A  L  Y  S  R  A  E  G  Y  E  L  Q  K  M  D  L  K  C  F  K  I  D  G  *  C  I  F  I  S  P  N  *  *  Y  F  R  S  Q  W  L  Q  G  *  G  *  Y  F  M  Q  V  Y  R  V  E  M  S  G  R  N  F  T  N  T  S  E  K  A  D  S  *  V  S  P  S  M  C  T  Y  I  *  C  N  I  L  Y  H  V  T  I  D  L  V  I  V  S  I  W  Y  C  W  S  L  E  *  *  S  D  Y  S  A  T  L  N  F  L  H  K  L  V  K  L  V  T  F  K  R  A  I  S  *  L  V  Q  K  A  V  I  T  L  Y  E  N  C  F  N  I  S  P  D  V   </first_frame>
            <second_frame>  Q  H  V  S  *  F  Q  P  H  L  F  K  F  L  Y  F  T  I  S  *  K  S  E  S  C  Y  *  N  F  I  S  K  L  *  Q  N  Q  E  K  S  T  Q  D  S  I  F  K  K  L  N  L  T  I  W  G  K  G  *  S  S  L  C  M  S  *  F  V  K  S  S  K  S  T  R  P  I  Y  G  K  R  F  S  W  F  Y  R  G  E  *  A  W  W  W  K  *  *  W  R  P  M  G  L  D  D  V  V  C  T  V  W  L  V  V  W  T  H  V  L  C  F  L  P  C  S  *  P  D  P   : V  D  R  R  V  F  L  K  K  A  P  *  F  E  R  R  *  W  I  P  Y  E  *  S  A  S  G  T  L  V  Y  H  G  F  M  A  I  S  L  Q  Y  A  A  P  S  Y  C  *  K  :  F  K  R  R  H  S  C  L  A  F  S  C  T  F  M  L  W  W  C  I  C  S  H  S  L  F  C  S  L  E  T  T  T  S  T  C  *  R  N  *  A  S  K  V  T  F  E  F  A  *  I  *  A  N  S  R  G  K  E  F  F  H  L  T  T  T  *  L  L  Y  V  L  I  T  G  M  E  G  Y  V  *  N  R  V  R  I  S  N  P  R  C  V  S  C  Q  R  I  W  D  L  N  F  V  I  Y  K  N  V  K  N  L  L  T  T  K  S  H  R  K  *  E  Q  K  G  K  *  N  L  A  A  *  M  V  L  Y  C  M  L  Y  T  Q  E  Q  K  V  T  N  F  R  K  W  I  *  S  V  L  K  L  M  V  D  V  F  L  S  L  L  T  N  D  T  S  D  H  N  G  C  R  A  R  D  N  I  L  C  R  F  I  E  W  R  C  L  E  G  I  L  P  I  L  Q  R  K  Q  I  R  K  F  L  L  Q  C  V  H  T  Y  D  A  T  F  F  I  M  L  L  *  I  *  *  L  Y  R  F  G  I  V  G  L  W  S  N  D  Q  I  I  V  L  P  S  I  S  C  I  N  W  *  S  L  *  H  L  K  E  Q  S  V  N  W  S  R  R  R  L  S  H  S  T  R  I  A  S  T  F  H  Q  M  *  </second_frame>
            <third_frame>   N  M  L  A  N  S  S  L  I  S  S  N  F  S  T  L  L  F  L  R  N  Q  K  V  A  T  R  I  S  L  A  N  C  D  K  I  K  K  N  P  P  K  T  Q  F  L  K  N  S  I  S  R  F  G  V  K  G  S  L  L  Y  V  C  H  S  S  L  N  L  Q  N  Q  Q  D  P  S  M  E  K  D  L  A  G  S  T  E  E  N  E  L  G  G  G  S  N  N  G  D  Q  W  D  W  T  T  S  F  V  L  F  G  L  W  S  G  L  M  Y  Y  V  F  F  L  A  P  N  Q  T  P  :  L  T  D  V  Y  F  L  K  K  L  L  N  L  K  G  D  D  G  F  R  M  N  E  V  L  V  G  L  W  Y  I  M  G  L  W  P  L  V  Y  S  M  L  L  L  P  T  A  R  S :   S  K  G  G  I  P  V  W  P  F  L  V  L  S  C  F  G  G  A  Y  V  L  I  P  Y  F  A  L  W  K  P  P  P  P  P  V  E  E  T  E  L  Q  R  L  P  L  N  L  L  E  S  K  L  T  A  G  V  R  N  S  F  I  *  Q  L  R  N  F  S  M  S  L  *  L  G  W  R  D  M  S  E  I  E  *  E  Y  P  T  L  D  A  S  H  A  K  E  Y  G  T  *  I  L  L  Y  I  R  M  L  R  I  F  L  Q  P  N  H  I  G  S  K  N  K  K  A  S  E  I  W  Q  P  K  W  Y  C  I  V  C  F  I  L  K  S  R  R  L  R  T  S  E  N  G  S  E  V  F  *  N  *  W  L  M  Y  F  Y  L  S  *  L  M  I  L  Q  I  T  M  A  A  G  L  G  I  I  F  Y  A  G  L  S  S  G  D  V  W  K  E  F  Y  Q  Y  F  R  E  S  R  F  V  S  F  S  F  N  V  Y  I  H  M  M  Q  H  S  L  S  C  Y  Y  R  F  S  N  C  I  D  L  V  L  L  V  F  G  V  M  I  R  L  *  C  Y  P  Q  F  P  A  *  T  G  K  A  C  D  I  *  K  S  N  Q  L  T  G  P  E  G  G  Y  H  T  L  R  E  L  L  Q  H  F  T  R  C  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35982" stop="35599"/>
                    <exon start="35154" stop="35009"/>
                    <exon start="34716" stop="34527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMLANSSLISSNFSTLLFLRNQKVATRISLANCDKIKKNPPKTQFLKNSISRFGVKGSLLYVCHSSLNLQNQQDPSMEKDLAGSTEENELGGGSNNGDQWDWTTSFVLFGLWSGLMYYVFFLAPNQTPLTDVYFLKKLLNLKGDDGFRMNEVLVGLWYIMGLWPLVYSMLLLPTARSSKGGIPVWPFLVLSCFGGAYVLIPYFALWKPPPPPVEETELQRLPLNLLESKLTAGVRNSFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34214" stop="33981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMILQITMAAGLGIIFYAGLSSGDVWKEFYQYFRESRFVSFSFNVYIHMMQHSLSCYYRFSNCIDLVLLVFGVMIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35984" e_stop="35599"/>
            <exon e_start="35154" e_stop="35009"/>
            <exon e_start="34716" e_stop="34101"/>
            <exon e_start="33282" e_stop="33200"/>
            <exon e_start="33120" e_stop="32999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.000" e_score="0.976"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35984" e_stop="35599" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35154" e_stop="35009" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34716" e_stop="34101" e_length="616"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="33282" e_stop="33200" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33199" i_stop="33121" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="0.943">
            <gDNA_exon_boundary e_start="33120" e_stop="32999" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35984" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35964" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35890" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35100" stop="35009"/>
              <exon start="34716" stop="34360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34389" stop="34101"/>
              <exon start="33282" stop="33200"/>
              <exon start="33120" stop="32999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACATGTTAGCTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG : TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG : TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGGGTAAGGAATTCTTTCATTTGACAACTACGTAACTTCTCTATGTCCTTATAACTGGGATGGAGGGATATGTCTGAAATAGAGTAAGAATATCCAACCCTCGATGCGTCTCATGCCAAAGAATATGGGACTTAAATTTTGTTATATATAAGAATGTTAAGAATCTTCTTACAACCAAATCACATCGGAAGTAAGAACAAAAAGGCAAGTGAAATCTGGCAGCCTAAATGGTACTGTATTGTATGCTTTATACTCAAGAGCAGAAGGTTACGAACTTCAGAAAATGGATCTGAAGTGTTTTAAAATTGATGGTTGATGTATTTTTATCTCTCCTAACTAATGATACTTCAGATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTC : GTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGCATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCGAAAGTG : GTATGACAAAGGATCTTGGCTTCTTCCGCTGTCGGTGATCCCTTTTTTGGGTCCAGCACTATACCTTCTCCTACGCCCATCTCTTCCAACAGTACCAGCCTTATCAAGCCCAACTTCGACTG</gDNA_template>
            <first_frame> S  T  C  *  L  I  P  A  S  S  L  Q  I  S  L  L  Y  Y  F  L  E  I  R  K  L  L  L  E  F  H  *  Q  T  V  T  K  S  R  K  I  H  P  R  L  N  F  *  K  T  Q  S  H  D  L  G  *  R  V  V  F  F  M  Y  V  I  V  R  *  I  F  K  I  N  K  T  H  L  W  K  K  I  *  L  V  L  Q  R  R  M  S  L  V  V  E  V  I  M  E  T  N  G  I  G  R  R  R  L  Y  C  L  A  C  G  L  D  S  C  T  M  F  S  S  L  L  L  T  R  P  R :   *  Q  T  C  I  S  *  K  S  S  L  I  *  K  E  M  M  D  S  V  *  M  K  C  *  W  D  F  G  I  S  W  V  Y  G  H  *  F  T  V  C  C  S  F  L  L  L  E   : V  Q  K  A  A  F  L  F  G  L  F  L  Y  F  H  A  L  V  V  H  M  F  S  F  L  I  L  L  S  G  N  H  H  L  H  L  L  K  K  L  S  F  K  G  Y  L  *  I  C  L  N  L  S  *  Q  Q  G  *  G  I  L  S  F  D  N  Y  V  T  S  L  C  P  Y  N  W  D  G  G  I  C  L  K  *  S  K  N  I  Q  P  S  M  R  L  M  P  K  N  M  G  L  K  F  C  Y  I  *  E  C  *  E  S  S  Y  N  Q  I  T  S  E  V  R  T  K  R  Q  V  K  S  G  S  L  N  G  T  V  L  Y  A  L  Y  S  R  A  E  G  Y  E  L  Q  K  M  D  L  K  C  F  K  I  D  G  *  C  I  F  I  S  P  N  *  *  Y  F  R  S  Q  W  L  Q  G  *  G  *  Y  F  M  Q  V  Y  R  V  E  M  S  G  R  N  F  T  N  T  S  E  K  A  D  S :   S  M  R  R  R  L  I  S  V  Y  Y  R  H  L  H  P  S  G  F  T  M  I  *  L  L  E  S   : G  M  T  K  D  L  G  F  F  R  C  R  *  S  L  F  W  V  Q  H  Y  T  F  S  Y  A  H  L  F  Q  Q  Y  Q  P  Y  Q  A  Q  L  R  L </first_frame>
            <second_frame>  Q  H  V  S  *  F  Q  P  H  L  F  K  F  L  Y  F  T  I  S  *  K  S  E  S  C  Y  *  N  F  I  S  K  L  *  Q  N  Q  E  K  S  T  Q  D  S  I  F  K  K  L  N  L  T  I  W  G  K  G  *  S  S  L  C  M  S  *  F  V  K  S  S  K  S  T  R  P  I  Y  G  K  R  F  S  W  F  Y  R  G  E  *  A  W  W  W  K  *  *  W  R  P  M  G  L  D  D  V  V  C  T  V  W  L  V  V  W  T  H  V  L  C  F  L  P  C  S  *  P  D  P   : V  D  R  R  V  F  L  K  K  A  P  *  F  E  R  R  *  W  I  P  Y  E  *  S  A  S  G  T  L  V  Y  H  G  F  M  A  I  S  L  Q  Y  A  A  P  S  Y  C  *  K  :  F  K  R  R  H  S  C  L  A  F  S  C  T  F  M  L  W  W  C  I  C  S  H  S  L  F  C  S  L  E  T  T  T  S  T  C  *  R  N  *  A  S  K  V  T  F  E  F  A  *  I  *  A  N  S  R  G  K  E  F  F  H  L  T  T  T  *  L  L  Y  V  L  I  T  G  M  E  G  Y  V  *  N  R  V  R  I  S  N  P  R  C  V  S  C  Q  R  I  W  D  L  N  F  V  I  Y  K  N  V  K  N  L  L  T  T  K  S  H  R  K  *  E  Q  K  G  K  *  N  L  A  A  *  M  V  L  Y  C  M  L  Y  T  Q  E  Q  K  V  T  N  F  R  K  W  I  *  S  V  L  K  L  M  V  D  V  F  L  S  L  L  T  N  D  T  S  D  H  N  G  C  R  A  R  D  N  I  L  C  R  F  I  E  W  R  C  L  E  G  I  L  P  I  L  Q  R  K  Q  I   : R  P  C  D  V  D  *  F  Q  F  T  I  G  I  C  T  L  L  D  L  Q  *  Y  D  C  S  K  V  :  V  *  Q  R  I  L  A  S  S  A  V  G  D  P  F  F  G  S  S  T  I  P  S  P  T  P  I  S  S  N  S  T  S  L  I  K  P  N  F  D   </second_frame>
            <third_frame>   N  M  L  A  N  S  S  L  I  S  S  N  F  S  T  L  L  F  L  R  N  Q  K  V  A  T  R  I  S  L  A  N  C  D  K  I  K  K  N  P  P  K  T  Q  F  L  K  N  S  I  S  R  F  G  V  K  G  S  L  L  Y  V  C  H  S  S  L  N  L  Q  N  Q  Q  D  P  S  M  E  K  D  L  A  G  S  T  E  E  N  E  L  G  G  G  S  N  N  G  D  Q  W  D  W  T  T  S  F  V  L  F  G  L  W  S  G  L  M  Y  Y  V  F  F  L  A  P  N  Q  T  P  :  L  T  D  V  Y  F  L  K  K  L  L  N  L  K  G  D  D  G  F  R  M  N  E  V  L  V  G  L  W  Y  I  M  G  L  W  P  L  V  Y  S  M  L  L  L  P  T  A  R  S :   S  K  G  G  I  P  V  W  P  F  L  V  L  S  C  F  G  G  A  Y  V  L  I  P  Y  F  A  L  W  K  P  P  P  P  P  V  E  E  T  E  L  Q  R  L  P  L  N  L  L  E  S  K  L  T  A  G  V  R  N  S  F  I  *  Q  L  R  N  F  S  M  S  L  *  L  G  W  R  D  M  S  E  I  E  *  E  Y  P  T  L  D  A  S  H  A  K  E  Y  G  T  *  I  L  L  Y  I  R  M  L  R  I  F  L  Q  P  N  H  I  G  S  K  N  K  K  A  S  E  I  W  Q  P  K  W  Y  C  I  V  C  F  I  L  K  S  R  R  L  R  T  S  E  N  G  S  E  V  F  *  N  *  W  L  M  Y  F  Y  L  S  *  L  M  I  L  Q  I  T  M  A  A  G  L  G  I  I  F  Y  A  G  L  S  S  G  D  V  W  K  E  F  Y  Q  Y  F  R  E  S  R  F  :  V  H  A  T  S  I  D  F  S  L  L  S  A  F  A  P  F  W  I  Y  N  D  M  T  A  R  K  W :   Y  D  K  G  S  W  L  L  P  L  S  V  I  P  F  L  G  P  A  L  Y  L  L  L  R  P  S  L  P  T  V  P  A  L  S  S  P  T  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35982" stop="35599"/>
                    <exon start="35154" stop="35009"/>
                    <exon start="34716" stop="34527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMLANSSLISSNFSTLLFLRNQKVATRISLANCDKIKKNPPKTQFLKNSISRFGVKGSLLYVCHSSLNLQNQQDPSMEKDLAGSTEENELGGGSNNGDQWDWTTSFVLFGLWSGLMYYVFFLAPNQTPLTDVYFLKKLLNLKGDDGFRMNEVLVGLWYIMGLWPLVYSMLLLPTARSSKGGIPVWPFLVLSCFGGAYVLIPYFALWKPPPPPVEETELQRLPLNLLESKLTAGVRNSFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34214" stop="34101"/>
                    <exon start="33282" stop="33200"/>
                    <exon start="33120" stop="33000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMILQITMAAGLGIIFYAGLSSGDVWKEFYQYFRESRFVHATSIDFSLLSAFAPFWIYNDMTARKWYDKGSWLLPLSVIPFLGPALYLLLRPSLPTVPALSSPTST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="35984" e_stop="35599"/>
            <exon e_start="35154" e_stop="35009"/>
            <exon e_start="34716" e_stop="34548"/>
            <exon e_start="34183" e_stop="34101"/>
            <exon e_start="33282" e_stop="33248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35984" e_stop="35599" e_length="386"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.971">
            <gDNA_intron_boundary i_start="35598" i_stop="35155" i_length="444"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35154" e_stop="35009" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34716" e_stop="34548" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="34547" i_stop="34184" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34183" e_stop="34101" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33282" e_stop="33248" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35984" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35967" stop="35599"/>
              <exon start="35154" stop="35056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35964" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35890" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35701" stop="35599"/>
              <exon start="35154" stop="35009"/>
              <exon start="34716" stop="34548"/>
              <exon start="34183" stop="34101"/>
              <exon start="33282" stop="33248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACATGTTAGCTAATTCCAGCCTCATCTCTTCAAATTTCTCTACTTTACTATTTCTTAGAAATCAGAAAGTTGCTACTAGAATTTCATTAGCAAACTGTGACAAAATCAAGAAAAATCCACCCAAGACTCAATTTTTAAAAAACTCAATCTCACGATTTGGGGTAAAGGGTAGTCTTCTTTATGTATGTCATAGTTCGTTAAATCTTCAAAATCAACAAGACCCATCTATGGAAAAAGATTTAGCTGGTTCTACAGAGGAGAATGAGCTTGGTGGTGGAAGTAATAATGGAGACCAATGGGATTGGACGACGTCGTTTGTACTGTTTGGCTTGTGGTCTGGACTCATGTACTATGTTTTCTTCCTTGCTCCTAACCAGACCCCG : TTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG : TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGG : GGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTC : GTCCATGCGACGTCGATTGATTTCAGTTTACTATC</gDNA_template>
            <first_frame> S  T  C  *  L  I  P  A  S  S  L  Q  I  S  L  L  Y  Y  F  L  E  I  R  K  L  L  L  E  F  H  *  Q  T  V  T  K  S  R  K  I  H  P  R  L  N  F  *  K  T  Q  S  H  D  L  G  *  R  V  V  F  F  M  Y  V  I  V  R  *  I  F  K  I  N  K  T  H  L  W  K  K  I  *  L  V  L  Q  R  R  M  S  L  V  V  E  V  I  M  E  T  N  G  I  G  R  R  R  L  Y  C  L  A  C  G  L  D  S  C  T  M  F  S  S  L  L  L  T  R  P  R :   *  Q  T  C  I  S  *  K  S  S  L  I  *  K  E  M  M  D  S  V  *  M  K  C  *  W  D  F  G  I  S  W  V  Y  G  H  *  F  T  V  C  C  S  F  L  L  L  E   : V  Q  K  A  A  F  L  F  G  L  F  L  Y  F  H  A  L  V  V  H  M  F  S  F  L  I  L  L  S  G  N  H  H  L  H  L  L  K  K  L  S  F  K  G  Y  L  *  I  C  L  N  L  S  *  Q  Q  G :   A  R  D  N  I  L  C  R  F  I  E  W  R  C  L  E  G  I  L  P  I  L  Q  R  K  Q  I   : R  P  C  D  V  D  *  F  Q  F  T  I </first_frame>
            <second_frame>  Q  H  V  S  *  F  Q  P  H  L  F  K  F  L  Y  F  T  I  S  *  K  S  E  S  C  Y  *  N  F  I  S  K  L  *  Q  N  Q  E  K  S  T  Q  D  S  I  F  K  K  L  N  L  T  I  W  G  K  G  *  S  S  L  C  M  S  *  F  V  K  S  S  K  S  T  R  P  I  Y  G  K  R  F  S  W  F  Y  R  G  E  *  A  W  W  W  K  *  *  W  R  P  M  G  L  D  D  V  V  C  T  V  W  L  V  V  W  T  H  V  L  C  F  L  P  C  S  *  P  D  P   : V  D  R  R  V  F  L  K  K  A  P  *  F  E  R  R  *  W  I  P  Y  E  *  S  A  S  G  T  L  V  Y  H  G  F  M  A  I  S  L  Q  Y  A  A  P  S  Y  C  *  K  :  F  K  R  R  H  S  C  L  A  F  S  C  T  F  M  L  W  W  C  I  C  S  H  S  L  F  C  S  L  E  T  T  T  S  T  C  *  R  N  *  A  S  K  V  T  F  E  F  A  *  I  *  A  N  S  R   : G  L  G  I  I  F  Y  A  G  L  S  S  G  D  V  W  K  E  F  Y  Q  Y  F  R  E  S  R  F  :  V  H  A  T  S  I  D  F  S  L  L   </second_frame>
            <third_frame>   N  M  L  A  N  S  S  L  I  S  S  N  F  S  T  L  L  F  L  R  N  Q  K  V  A  T  R  I  S  L  A  N  C  D  K  I  K  K  N  P  P  K  T  Q  F  L  K  N  S  I  S  R  F  G  V  K  G  S  L  L  Y  V  C  H  S  S  L  N  L  Q  N  Q  Q  D  P  S  M  E  K  D  L  A  G  S  T  E  E  N  E  L  G  G  G  S  N  N  G  D  Q  W  D  W  T  T  S  F  V  L  F  G  L  W  S  G  L  M  Y  Y  V  F  F  L  A  P  N  Q  T  P  :  L  T  D  V  Y  F  L  K  K  L  L  N  L  K  G  D  D  G  F  R  M  N  E  V  L  V  G  L  W  Y  I  M  G  L  W  P  L  V  Y  S  M  L  L  L  P  T  A  R  S :   S  K  G  G  I  P  V  W  P  F  L  V  L  S  C  F  G  G  A  Y  V  L  I  P  Y  F  A  L  W  K  P  P  P  P  P  V  E  E  T  E  L  Q  R  L  P  L  N  L  L  E  S  K  L  T  A  G  :  G  *  G  *  Y  F  M  Q  V  Y  R  V  E  M  S  G  R  N  F  T  N  T  S  E  K  A  D  S :   S  M  R  R  R  L  I  S  V  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35982" stop="35599"/>
                    <exon start="35154" stop="35009"/>
                    <exon start="34716" stop="34548"/>
                    <exon start="34183" stop="34178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMLANSSLISSNFSTLLFLRNQKVATRISLANCDKIKKNPPKTQFLKNSISRFGVKGSLLYVCHSSLNLQNQQDPSMEKDLAGSTEENELGGGSNNGDQWDWTTSFVLFGLWSGLMYYVFFLAPNQTPLTDVYFLKKLLNLKGDDGFRMNEVLVGLWYIMGLWPLVYSMLLLPTARSSKGGIPVWPFLVLSCFGGAYVLIPYFALWKPPPPPVEETELQRLPLNLLESKLTAGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35155" e_stop="35009"/>
            <exon e_start="34716" e_stop="34548"/>
            <exon e_start="34199" e_stop="34101"/>
            <exon e_start="33282" e_stop="33200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.980"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35155" e_stop="35009" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35008" i_stop="34717" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34716" e_stop="34548" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="34547" i_stop="34200" i_length="348"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="34199" e_stop="34101" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34100" i_stop="33283" i_length="818"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33282" e_stop="33200" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35155" stop="35009"/>
              <exon start="34716" stop="34548"/>
              <exon start="34199" stop="34101"/>
              <exon start="33282" stop="33200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGACAGACGTGTATTTCTTAAAAAAGCTCCTTAATTTGAAAGGAGATGATGGATTCCGTATGAATGAAGTGCTAGTGGGACTTTGGTATATCATGGGTTTATGGCCATTAGTTTACAGTATGCTGCTCCTTCCTACTGCTAGAAG : TTCAAAAGGCGGCATTCCTGTTTGGCCTTTTCTTGTACTTTCATGCTTTGGTGGTGCATATGTTCTCATTCCTTATTTTGCTCTCTGGAAACCACCACCTCCACCTGTTGAAGAAACTGAGCTTCAAAGGTTACCTTTGAATTTGCTTGAATCTAAGCTAACAGCAGGG : ATCACAATGGCTGCAGGGCTAGGGATAATATTTTATGCAGGTTTATCGAGTGGAGATGTCTGGAAGGAATTTTACCAATACTTCAGAGAAAGCAGATTC : GTCCATGCGACGTCGATTGATTTCAGTTTACTATCGGCATTTGCACCCTTCTGGATTTACAATGATATGACTGCTCGAAAGTG</gDNA_template>
            <first_frame> V  D  R  R  V  F  L  K  K  A  P  *  F  E  R  R  *  W  I  P  Y  E  *  S  A  S  G  T  L  V  Y  H  G  F  M  A  I  S  L  Q  Y  A  A  P  S  Y  C  *  K  :  F  K  R  R  H  S  C  L  A  F  S  C  T  F  M  L  W  W  C  I  C  S  H  S  L  F  C  S  L  E  T  T  T  S  T  C  *  R  N  *  A  S  K  V  T  F  E  F  A  *  I  *  A  N  S  R   : D  H  N  G  C  R  A  R  D  N  I  L  C  R  F  I  E  W  R  C  L  E  G  I  L  P  I  L  Q  R  K  Q  I   : R  P  C  D  V  D  *  F  Q  F  T  I  G  I  C  T  L  L  D  L  Q  *  Y  D  C  S  K  V </first_frame>
            <second_frame>  L  T  D  V  Y  F  L  K  K  L  L  N  L  K  G  D  D  G  F  R  M  N  E  V  L  V  G  L  W  Y  I  M  G  L  W  P  L  V  Y  S  M  L  L  L  P  T  A  R  S :   S  K  G  G  I  P  V  W  P  F  L  V  L  S  C  F  G  G  A  Y  V  L  I  P  Y  F  A  L  W  K  P  P  P  P  P  V  E  E  T  E  L  Q  R  L  P  L  N  L  L  E  S  K  L  T  A  G  :  I  T  M  A  A  G  L  G  I  I  F  Y  A  G  L  S  S  G  D  V  W  K  E  F  Y  Q  Y  F  R  E  S  R  F  :  V  H  A  T  S  I  D  F  S  L  L  S  A  F  A  P  F  W  I  Y  N  D  M  T  A  R  K   </second_frame>
            <third_frame>   *  Q  T  C  I  S  *  K  S  S  L  I  *  K  E  M  M  D  S  V  *  M  K  C  *  W  D  F  G  I  S  W  V  Y  G  H  *  F  T  V  C  C  S  F  L  L  L  E   : V  Q  K  A  A  F  L  F  G  L  F  L  Y  F  H  A  L  V  V  H  M  F  S  F  L  I  L  L  S  G  N  H  H  L  H  L  L  K  K  L  S  F  K  G  Y  L  *  I  C  L  N  L  S  *  Q  Q  G :   S  Q  W  L  Q  G  *  G  *  Y  F  M  Q  V  Y  R  V  E  M  S  G  R  N  F  T  N  T  S  E  K  A  D  S :   S  M  R  R  R  L  I  S  V  Y  Y  R  H  L  H  P  S  G  F  T  M  I  *  L  L  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35154" stop="35009"/>
                    <exon start="34716" stop="34548"/>
                    <exon start="34199" stop="34101"/>
                    <exon start="33282" stop="33202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTDVYFLKKLLNLKGDDGFRMNEVLVGLWYIMGLWPLVYSMLLLPTARSSKGGIPVWPFLVLSCFGGAYVLIPYFALWKPPPPPVEETELQRLPLNLLESKLTAGITMAAGLGIIFYAGLSSGDVWKEFYQYFRESRFVHATSIDFSLLSAFAPFWIYNDMTARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="36681" PGL_stop="47166"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36681" e_stop="37057"/>
            <exon e_start="38654" e_stop="38817"/>
            <exon e_start="38940" e_stop="39023"/>
            <exon e_start="40437" e_stop="40494"/>
            <exon e_start="41062" e_stop="41115"/>
            <exon e_start="41360" e_stop="41431"/>
            <exon e_start="41521" e_stop="41601"/>
            <exon e_start="44593" e_stop="44765"/>
            <exon e_start="44997" e_stop="45099"/>
            <exon e_start="45187" e_stop="45318"/>
            <exon e_start="45978" e_stop="46100"/>
            <exon e_start="46411" e_stop="46801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.978" e_score="0.966"/>
          <exon-intron don_prob="0.688" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36681" e_stop="37057" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38654" e_stop="38817" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.781">
            <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38940" e_stop="39023" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="40437" e_stop="40494" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.978">
            <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="41062" e_stop="41115" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.688" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41360" e_stop="41431" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41521" e_stop="41601" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.794">
            <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44593" e_stop="44765" e_length="173"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44997" e_stop="45099" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.949" acc_prob="0.665">
            <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45187" e_stop="45318" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.984">
            <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45978" e_stop="46100" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.962" acc_prob="0.964">
            <gDNA_intron_boundary i_start="46101" i_stop="46410" i_length="310"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="46411" e_stop="46801" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36681" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36682" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36688" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38964" stop="39023"/>
              <exon start="40437" stop="40494"/>
              <exon start="41062" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38964" stop="39023"/>
              <exon start="40437" stop="40494"/>
              <exon start="41062" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41096" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41097" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41102" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45011" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46100"/>
              <exon start="46411" stop="46801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396482" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45978" stop="46100"/>
              <exon start="46411" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45978" stop="46100"/>
              <exon start="46411" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45978" stop="46100"/>
              <exon start="46411" stop="46686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435106" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG : AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG : GACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAATAAGACAGCGGGCGGTTGAAAGGATAAATAACGTCATTGGAAC : GTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAG : ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTG : GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG : GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG : GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC : ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG : ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG : GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT : ATATTGAGGAGAAGATTGAGGGACATAAGGAGTGGAGAATTGAGGGCTCTGAATTTATTTGATGGACTTAAGAACCTTTTCAAATGACTTAAAGAATGACTCTTCCTGGTTTTTGAAATTGTTTTCCAAGAAAGTTTGCCACTTTCTCAATGATCAATTCTACAACACAAGTTGGAGTTTCCTGAAAATCTCTGCTCTCAGTGTATAATTTGCTATTCTACCTTCCAGCTTAATTAGTTTCAAGATTATTTGTAATCTCCAAACTTTTTTGCTTACTGTTATGACCGGTTTGATGTTGCCATGTGTCTTTCTTTTTAGCACCAATAAGTGTATTTTTTACTCTCTTTTTTCCTGTGTGTTTGGTACATAAGAAAAAAATATTATTCTAAAA</gDNA_template>
            <first_frame> Q  W  R  K  L  L  K  F  S  N  Q  F  F  F  L  L  S  S  I  N  *  T  E  P  L  I  P  I  L  D  C  V  E  E  T  D  A  T  S  V  S  V  V  L  Q  F  L  Q  L  K  L  T  N  P  Q  R  L  R  T  F  H  G  V  A  R  L  I  L  *  K  M  R  P  I  C  R  N  G  *  R  N  Q  G  F  L  L  K  N  W  T  Y  K  E  *  M  L  E  K  E  D  L  L  L  T  T  I  L  G  K  G  K  G  C  F  L  F  L  L  H  L  S  S  L  L  I  R :   N  G  A  I  Q  M  L  V  M  F  *  N  N  I  M  Y  Q  I  G  L  L  L  L  H  I  *  *  V  R  Q  A  S  *  S  L  Q  D  G  A  T  T  Y  L  P  C  L  G  S  L  T  L  S  Y  T   : G  L  N  R  S  *  I  G  T  W  K  H  H  K  *  D  S  G  R  L  K  G  *  I  T  S  L  E   : R  T  M  T  *  G  S  E  Y  F  P  S  I  L  I  Y  F  L  K  R :   Y  S  T  *  R  L  S  T  G  H  L  E  F  S  S  H  V  W :   S  G  Y  P  L  W  M  E  E  L  R  W  F  L  G  Q  I  C  *  I  I  I  V  R :   W  K  H  F  L  T  M  I  N  H  R  K  E  S  S  L  Q  Q  T  G  H  I  C  Q  V  S  R :   F  L  Y  H  M  E  G  N  L  M  E  N  F  C  F  H  M  D  L  F  L  K  K  G  P  I  Q  A  T  Q  L  R  C  H  W  H  L  R  N  L  T  N  V  T  K  R  R  W  K  L  *  R  S  M  D  Y  Q   : H  Q  N  V  F  Q  Y  K  L  L  V  G  H  W  S  *  W  L  L  L  I  *  W  S  V  H  L  A  *  A  D  S  L  K  R :   W  L  L  L  H  Q  T  R  Q  H  Q  R  K  I  S  S  I  Q  K  *  K  K  M  H  C  N  L  F  S  I  V  V  N  L  A  Y  Q  S  I  P  N  S  F  R :   Q  V  E  K  W  I  S  M  *  Q  T  Q  S  N  *  T  E  E  C  F  *  N  S  *  Q  L  T  C  V  Q  V  S  E  G  Y  S  I  V  A  N  I :   Y  *  G  E  D  *  G  T  *  G  V  E  N  *  G  L  *  I  Y  L  M  D  L  R  T  F  S  N  D  L  K  N  D  S  S  W  F  L  K  L  F  S  K  K  V  C  H  F  L  N  D  Q  F  Y  N  T  S  W  S  F  L  K  I  S  A  L  S  V  *  F  A  I  L  P  S  S  L  I  S  F  K  I  I  C  N  L  Q  T  F  L  L  T  V  M  T  G  L  M  L  P  C  V  F  L  F  S  T  N  K  C  I  F  Y  S  L  F  S  C  V  F  G  T  *  E  K  N  I  I  L  K </first_frame>
            <second_frame>  N  G  G  S  Y  *  N  S  P  T  S  S  S  S  S  F  L  P  *  T  R  R  N  H  *  F  P  F  *  I  V  *  K  K  Q  T  Q  H  Q  Y  P  L  F  F  N  F  Y  N  *  N  *  Q  I  H  K  D  S  E  H  S  M  G  L  R  D  *  F  Y  R  K  C  V  Q  F  A  E  M  V  D  G  I  R  A  S  C  S  K  I  G  L  T  K  S  E  C  W  R  K  R  T  C  C  *  Q  Q  Y  *  E  R  G  K  A  A  F  C  S  S  F  T  C  H  H  C  *  F   : E  M  E  Q  F  R  C  W  *  C  F  K  T  I  *  C  T  R  L  A  F  Y  C  Y  I  F  N  K  *  G  K  P  H  E  V  F  K  M  E  Q  L  H  I  C  L  A  *  A  A  L  L  S  L  I  L  :  D  S  I  G  V  R  *  V  L  G  S  I  T  N  K  T  A  G  G  *  K  D  K  *  R  H  W  N  :  V  Q  *  L  K  A  Q  N  I  F  Q  A  S  *  F  I  S  *  R   : D  I  Q  H  R  D  F  Q  L  V  I  W  N  S  L  L  T  F   : G  Q  V  T  L  Y  G  W  K  S  C  V  G  S  L  G  R  Y  V  E  S  *  L  *   : G  G  N  I  S  *  L  *  *  I  I  A  R  N  R  L  Y  N  R  Q  G  I  S  A  R  *  A   : G  F  Y  I  I  W  K  E  I  *  W  R  T  F  A  F  I  W  I  C  S  *  R  R  D  Q  S  K  R  L  S  *  G  V  I  G  T  *  E  I  *  Q  M  L  Q  R  E  G  G  S  S  K  E  A  W  I  I  S  :  I  R  M  F  S  S  T  S  Y  W  L  A  T  G  V  D  G  F  C  L  S  S  G  Q  S  T  *  H  E  Q  T  V  *  R   : D  G  C  C  C  I  K  Q  G  N  I  K  E  R  Y  Q  V  S  R  N  R  R  R  C  I  A  I  Y  S  R  *  L  *  I  *  H  I  K  V  F  Q  I  P  S   : G  K  W  R  N  G  S  R  C  N  K  P  K  A  T  K  Q  K  S  V  S  E  T  A  S  S  *  P  V  Y  K  *  A  K  D  T  L  S  *  P  I   : Y  I  E  E  K  I  E  G  H  K  E  W  R  I  E  G  S  E  F  I  *  W  T  *  E  P  F  Q  M  T  *  R  M  T  L  P  G  F  *  N  C  F  P  R  K  F  A  T  F  S  M  I  N  S  T  T  Q  V  G  V  S  *  K  S  L  L  S  V  Y  N  L  L  F  Y  L  P  A  *  L  V  S  R  L  F  V  I  S  K  L  F  C  L  L  L  *  P  V  *  C  C  H  V  S  F  F  L  A  P  I  S  V  F  F  T  L  F  F  P  V  C  L  V  H  K  K  K  I  L  F  *   </second_frame>
            <third_frame>   M  A  E  V  T  K  I  L  Q  P  V  L  L  P  P  F  F  H  K  L  D  G  T  T  N  S  H  F  R  L  C  R  R  N  R  R  N  I  S  I  R  C  S  S  I  S  T  T  E  T  N  K  S  T  K  T  Q  N  I  P  W  G  C  E  T  D  S  I  E  N  A  S  N  L  Q  K  W  L  T  E  S  G  L  P  A  Q  K  L  D  L  Q  R  V  N  V  G  E  R  G  L  V  A  N  N  N  I  R  K  G  E  R  L  L  F  V  P  P  S  L  V  I  T  A  D  S  :  K  W  S  N  S  D  A  G  D  V  L  K  Q  Y  N  V  P  D  W  P  F  I  A  T  Y  L  I  S  E  A  S  L  M  K  S  S  R  W  S  N  Y  I  S  A  L  P  R  Q  P  Y  S  L  L  Y  W :   T  Q  S  E  L  D  R  Y  L  E  A  S  Q  I  R  Q  R  A  V  E  R  I  N  N  V  I  G  T :   Y  N  D  L  R  L  R  I  F  S  K  H  P  D  L  F  P  E  E  :  I  F  N  I  E  T  F  N  W  S  F  G  I  L  F  S  R  L  :  V  R  L  P  S  M  D  G  R  V  A  L  V  P  W  A  D  M  L  N  H  N  C  E  :  V  E  T  F  L  D  Y  D  K  S  S  Q  G  I  V  F  T  T  D  R  A  Y  L  P  G  E  Q  :  V  F  I  S  Y  G  R  K  S  N  G  E  L  L  L  S  Y  G  F  V  P  K  E  G  T  N  P  S  D  S  V  E  V  S  L  A  L  K  K  S  D  K  C  Y  K  E  K  V  E  A  L  K  K  H  G  L  S  A :   S  E  C  F  P  V  Q  V  T  G  W  P  L  E  L  M  A  F  A  Y  L  V  V  S  P  P  S  M  S  R  Q  F  E  E  :  M  A  A  A  A  S  N  K  A  T  S  K  K  D  I  K  Y  P  E  I  E  E  D  A  L  Q  F  I  L  D  S  C  E  S  S  I  S  K  Y  S  K  F  L  Q  :  A  S  G  E  M  D  L  D  V  T  N  P  K  Q  L  N  R  R  V  F  L  K  Q  L  A  V  D  L  C  T  S  E  R  R  I  L  Y  R  S  Q  Y  :  I  L  R  R  R  L  R  D  I  R  S  G  E  L  R  A  L  N  L  F  D  G  L  K  N  L  F  K  *  L  K  E  *  L  F  L  V  F  E  I  V  F  Q  E  S  L  P  L  S  Q  *  S  I  L  Q  H  K  L  E  F  P  E  N  L  C  S  Q  C  I  I  C  Y  S  T  F  Q  L  N  *  F  Q  D  Y  L  *  S  P  N  F  F  A  Y  C  Y  D  R  F  D  V  A  M  C  L  S  F  *  H  Q  *  V  Y  F  L  L  S  F  F  L  C  V  W  Y  I  R  K  K  Y  Y  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36683" stop="37057"/>
                    <exon start="38654" stop="38817"/>
                    <exon start="38940" stop="39023"/>
                    <exon start="40437" stop="40494"/>
                    <exon start="41062" stop="41115"/>
                    <exon start="41360" stop="41431"/>
                    <exon start="41521" stop="41601"/>
                    <exon start="44593" stop="44765"/>
                    <exon start="44997" stop="45099"/>
                    <exon start="45187" stop="45318"/>
                    <exon start="45978" stop="46100"/>
                    <exon start="46411" stop="46497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1503</number_coding_nucleotides>
                  <number_encoded_amino_acids>501</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAEVTKILQPVLLPPFFHKLDGTTNSHFRLCRRNRRNISIRCSSISTTETNKSTKTQNIPWGCETDSIENASNLQKWLTESGLPAQKLDLQRVNVGERGLVANNNIRKGERLLFVPPSLVITADSKWSNSDAGDVLKQYNVPDWPFIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTQSELDRYLEASQIRQRAVERINNVIGTYNDLRLRIFSKHPDLFPEEIFNIETFNWSFGILFSRLVRLPSMDGRVALVPWADMLNHNCEVETFLDYDKSSQGIVFTTDRAYLPGEQVFISYGRKSNGELLLSYGFVPKEGTNPSDSVEVSLALKKSDKCYKEKVEALKKHGLSASECFPVQVTGWPLELMAFAYLVVSPPSMSRQFEEMAAAASNKATSKKDIKYPEIEEDALQFILDSCESSISKYSKFLQASGEMDLDVTNPKQLNRRVFLKQLAVDLCTSERRILYRSQYILRRRLRDIRSGELRALNLFDGLKNLFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36681" e_stop="37057"/>
            <exon e_start="38654" e_stop="38817"/>
            <exon e_start="38940" e_stop="39023"/>
            <exon e_start="40437" e_stop="40494"/>
            <exon e_start="41062" e_stop="41115"/>
            <exon e_start="41360" e_stop="41431"/>
            <exon e_start="41521" e_stop="41601"/>
            <exon e_start="44593" e_stop="44765"/>
            <exon e_start="44997" e_stop="45099"/>
            <exon e_start="45187" e_stop="45318"/>
            <exon e_start="45978" e_stop="46100"/>
            <exon e_start="46837" e_stop="47166"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.978" e_score="0.966"/>
          <exon-intron don_prob="0.688" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36681" e_stop="37057" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38654" e_stop="38817" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.781">
            <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38940" e_stop="39023" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="40437" e_stop="40494" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.978">
            <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="41062" e_stop="41115" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.688" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41360" e_stop="41431" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41521" e_stop="41601" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.794">
            <gDNA_intron_boundary i_start="41602" i_stop="44592" i_length="2991"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44593" e_stop="44765" e_length="173"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44997" e_stop="45099" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.949" acc_prob="0.665">
            <gDNA_intron_boundary i_start="45100" i_stop="45186" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="45187" e_stop="45318" e_length="132"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.984">
            <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="45978" e_stop="46100" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.962" acc_prob="0.910">
            <gDNA_intron_boundary i_start="46101" i_stop="46836" i_length="736"/>
          </intron>
          <exon e_serial="12" e_score="0.994">
            <gDNA_exon_boundary e_start="46837" e_stop="47166" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36681" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36682" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36688" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38964" stop="39023"/>
              <exon start="40437" stop="40494"/>
              <exon start="41062" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38964" stop="39023"/>
              <exon start="40437" stop="40494"/>
              <exon start="41062" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41096" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41097" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41102" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41601"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45061" stop="45099"/>
              <exon start="45187" stop="45318"/>
              <exon start="45978" stop="46100"/>
              <exon start="46837" stop="47166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392431" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46004" stop="46100"/>
              <exon start="46837" stop="47166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392597" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG : AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG : GACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAATAAGACAGCGGGCGGTTGAAAGGATAAATAACGTCATTGGAAC : GTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAG : ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTG : GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG : GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAGGTGAGCAG : GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC : ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAG : ATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG : GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATAT : TTGGGTGGCGATGGGTGAAGATGAGGTATGTTGAAGGGTAAGACGACACACTAAACGTGCAATGCCGCTTATAGAACTTGTTGAATCCGAGAATACTAAGGAGGGATTGCTAGTACAGCTTGAGAAGGTTATAATGTGTTTAGAAATTTATTACTCTCATCGTCTCATTTTATATATCATTCATTTTTATAAATAGTTGATTCATAATATTTGTCATTTTCTAGAATCGCTGTATAAAATTATCATATTGTTTCTTTTTTACCCTTGTAAATTACTAAATAAATGATCCATGTTCATTGGTTAAATTAATTAATCAAAATAAATTTATTC</gDNA_template>
            <first_frame> Q  W  R  K  L  L  K  F  S  N  Q  F  F  F  L  L  S  S  I  N  *  T  E  P  L  I  P  I  L  D  C  V  E  E  T  D  A  T  S  V  S  V  V  L  Q  F  L  Q  L  K  L  T  N  P  Q  R  L  R  T  F  H  G  V  A  R  L  I  L  *  K  M  R  P  I  C  R  N  G  *  R  N  Q  G  F  L  L  K  N  W  T  Y  K  E  *  M  L  E  K  E  D  L  L  L  T  T  I  L  G  K  G  K  G  C  F  L  F  L  L  H  L  S  S  L  L  I  R :   N  G  A  I  Q  M  L  V  M  F  *  N  N  I  M  Y  Q  I  G  L  L  L  L  H  I  *  *  V  R  Q  A  S  *  S  L  Q  D  G  A  T  T  Y  L  P  C  L  G  S  L  T  L  S  Y  T   : G  L  N  R  S  *  I  G  T  W  K  H  H  K  *  D  S  G  R  L  K  G  *  I  T  S  L  E   : R  T  M  T  *  G  S  E  Y  F  P  S  I  L  I  Y  F  L  K  R :   Y  S  T  *  R  L  S  T  G  H  L  E  F  S  S  H  V  W :   S  G  Y  P  L  W  M  E  E  L  R  W  F  L  G  Q  I  C  *  I  I  I  V  R :   W  K  H  F  L  T  M  I  N  H  R  K  E  S  S  L  Q  Q  T  G  H  I  C  Q  V  S  R :   F  L  Y  H  M  E  G  N  L  M  E  N  F  C  F  H  M  D  L  F  L  K  K  G  P  I  Q  A  T  Q  L  R  C  H  W  H  L  R  N  L  T  N  V  T  K  R  R  W  K  L  *  R  S  M  D  Y  Q   : H  Q  N  V  F  Q  Y  K  L  L  V  G  H  W  S  *  W  L  L  L  I  *  W  S  V  H  L  A  *  A  D  S  L  K  R :   W  L  L  L  H  Q  T  R  Q  H  Q  R  K  I  S  S  I  Q  K  *  K  K  M  H  C  N  L  F  S  I  V  V  N  L  A  Y  Q  S  I  P  N  S  F  R :   Q  V  E  K  W  I  S  M  *  Q  T  Q  S  N  *  T  E  E  C  F  *  N  S  *  Q  L  T  C  V  Q  V  S  E  G  Y  S  I  V  A  N  I :   W  V  A  M  G  E  D  E  V  C  *  R  V  R  R  H  T  K  R  A  M  P  L  I  E  L  V  E  S  E  N  T  K  E  G  L  L  V  Q  L  E  K  V  I  M  C  L  E  I  Y  Y  S  H  R  L  I  L  Y  I  I  H  F  Y  K  *  L  I  H  N  I  C  H  F  L  E  S  L  Y  K  I  I  I  L  F  L  F  Y  P  C  K  L  L  N  K  *  S  M  F  I  G  *  I  N  *  S  K  *  I  Y   </first_frame>
            <second_frame>  N  G  G  S  Y  *  N  S  P  T  S  S  S  S  S  F  L  P  *  T  R  R  N  H  *  F  P  F  *  I  V  *  K  K  Q  T  Q  H  Q  Y  P  L  F  F  N  F  Y  N  *  N  *  Q  I  H  K  D  S  E  H  S  M  G  L  R  D  *  F  Y  R  K  C  V  Q  F  A  E  M  V  D  G  I  R  A  S  C  S  K  I  G  L  T  K  S  E  C  W  R  K  R  T  C  C  *  Q  Q  Y  *  E  R  G  K  A  A  F  C  S  S  F  T  C  H  H  C  *  F   : E  M  E  Q  F  R  C  W  *  C  F  K  T  I  *  C  T  R  L  A  F  Y  C  Y  I  F  N  K  *  G  K  P  H  E  V  F  K  M  E  Q  L  H  I  C  L  A  *  A  A  L  L  S  L  I  L  :  D  S  I  G  V  R  *  V  L  G  S  I  T  N  K  T  A  G  G  *  K  D  K  *  R  H  W  N  :  V  Q  *  L  K  A  Q  N  I  F  Q  A  S  *  F  I  S  *  R   : D  I  Q  H  R  D  F  Q  L  V  I  W  N  S  L  L  T  F   : G  Q  V  T  L  Y  G  W  K  S  C  V  G  S  L  G  R  Y  V  E  S  *  L  *   : G  G  N  I  S  *  L  *  *  I  I  A  R  N  R  L  Y  N  R  Q  G  I  S  A  R  *  A   : G  F  Y  I  I  W  K  E  I  *  W  R  T  F  A  F  I  W  I  C  S  *  R  R  D  Q  S  K  R  L  S  *  G  V  I  G  T  *  E  I  *  Q  M  L  Q  R  E  G  G  S  S  K  E  A  W  I  I  S  :  I  R  M  F  S  S  T  S  Y  W  L  A  T  G  V  D  G  F  C  L  S  S  G  Q  S  T  *  H  E  Q  T  V  *  R   : D  G  C  C  C  I  K  Q  G  N  I  K  E  R  Y  Q  V  S  R  N  R  R  R  C  I  A  I  Y  S  R  *  L  *  I  *  H  I  K  V  F  Q  I  P  S   : G  K  W  R  N  G  S  R  C  N  K  P  K  A  T  K  Q  K  S  V  S  E  T  A  S  S  *  P  V  Y  K  *  A  K  D  T  L  S  *  P  I   : F  G  W  R  W  V  K  M  R  Y  V  E  G  *  D  D  T  L  N  V  Q  C  R  L  *  N  L  L  N  P  R  I  L  R  R  D  C  *  Y  S  L  R  R  L  *  C  V  *  K  F  I  T  L  I  V  S  F  Y  I  S  F  I  F  I  N  S  *  F  I  I  F  V  I  F  *  N  R  C  I  K  L  S  Y  C  F  F  F  T  L  V  N  Y  *  I  N  D  P  C  S  L  V  K  L  I  N  Q  N  K  F  I  </second_frame>
            <third_frame>   M  A  E  V  T  K  I  L  Q  P  V  L  L  P  P  F  F  H  K  L  D  G  T  T  N  S  H  F  R  L  C  R  R  N  R  R  N  I  S  I  R  C  S  S  I  S  T  T  E  T  N  K  S  T  K  T  Q  N  I  P  W  G  C  E  T  D  S  I  E  N  A  S  N  L  Q  K  W  L  T  E  S  G  L  P  A  Q  K  L  D  L  Q  R  V  N  V  G  E  R  G  L  V  A  N  N  N  I  R  K  G  E  R  L  L  F  V  P  P  S  L  V  I  T  A  D  S  :  K  W  S  N  S  D  A  G  D  V  L  K  Q  Y  N  V  P  D  W  P  F  I  A  T  Y  L  I  S  E  A  S  L  M  K  S  S  R  W  S  N  Y  I  S  A  L  P  R  Q  P  Y  S  L  L  Y  W :   T  Q  S  E  L  D  R  Y  L  E  A  S  Q  I  R  Q  R  A  V  E  R  I  N  N  V  I  G  T :   Y  N  D  L  R  L  R  I  F  S  K  H  P  D  L  F  P  E  E  :  I  F  N  I  E  T  F  N  W  S  F  G  I  L  F  S  R  L  :  V  R  L  P  S  M  D  G  R  V  A  L  V  P  W  A  D  M  L  N  H  N  C  E  :  V  E  T  F  L  D  Y  D  K  S  S  Q  G  I  V  F  T  T  D  R  A  Y  L  P  G  E  Q  :  V  F  I  S  Y  G  R  K  S  N  G  E  L  L  L  S  Y  G  F  V  P  K  E  G  T  N  P  S  D  S  V  E  V  S  L  A  L  K  K  S  D  K  C  Y  K  E  K  V  E  A  L  K  K  H  G  L  S  A :   S  E  C  F  P  V  Q  V  T  G  W  P  L  E  L  M  A  F  A  Y  L  V  V  S  P  P  S  M  S  R  Q  F  E  E  :  M  A  A  A  A  S  N  K  A  T  S  K  K  D  I  K  Y  P  E  I  E  E  D  A  L  Q  F  I  L  D  S  C  E  S  S  I  S  K  Y  S  K  F  L  Q  :  A  S  G  E  M  D  L  D  V  T  N  P  K  Q  L  N  R  R  V  F  L  K  Q  L  A  V  D  L  C  T  S  E  R  R  I  L  Y  R  S  Q  Y  :  L  G  G  D  G  *  R  *  G  M  L  K  G  K  T  T  H  *  T  C  N  A  A  Y  R  T  C  *  I  R  E  Y  *  G  G  I  A  S  T  A  *  E  G  Y  N  V  F  R  N  L  L  L  S  S  S  H  F  I  Y  H  S  F  L  *  I  V  D  S  *  Y  L  S  F  S  R  I  A  V  *  N  Y  H  I  V  S  F  L  P  L  *  I  T  K  *  M  I  H  V  H  W  L  N  *  L  I  K  I  N  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36683" stop="37057"/>
                    <exon start="38654" stop="38817"/>
                    <exon start="38940" stop="39023"/>
                    <exon start="40437" stop="40494"/>
                    <exon start="41062" stop="41115"/>
                    <exon start="41360" stop="41431"/>
                    <exon start="41521" stop="41601"/>
                    <exon start="44593" stop="44765"/>
                    <exon start="44997" stop="45099"/>
                    <exon start="45187" stop="45318"/>
                    <exon start="45978" stop="46100"/>
                    <exon start="46837" stop="46854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAEVTKILQPVLLPPFFHKLDGTTNSHFRLCRRNRRNISIRCSSISTTETNKSTKTQNIPWGCETDSIENASNLQKWLTESGLPAQKLDLQRVNVGERGLVANNNIRKGERLLFVPPSLVITADSKWSNSDAGDVLKQYNVPDWPFIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTQSELDRYLEASQIRQRAVERINNVIGTYNDLRLRIFSKHPDLFPEEIFNIETFNWSFGILFSRLVRLPSMDGRVALVPWADMLNHNCEVETFLDYDKSSQGIVFTTDRAYLPGEQVFISYGRKSNGELLLSYGFVPKEGTNPSDSVEVSLALKKSDKCYKEKVEALKKHGLSASECFPVQVTGWPLELMAFAYLVVSPPSMSRQFEEMAAAASNKATSKKDIKYPEIEEDALQFILDSCESSISKYSKFLQASGEMDLDVTNPKQLNRRVFLKQLAVDLCTSERRILYRSQYLGGDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="36681" e_stop="37057"/>
            <exon e_start="38654" e_stop="38817"/>
            <exon e_start="38940" e_stop="39023"/>
            <exon e_start="40437" e_stop="40494"/>
            <exon e_start="41062" e_stop="41115"/>
            <exon e_start="41360" e_stop="41431"/>
            <exon e_start="41521" e_stop="41593"/>
            <exon e_start="44593" e_stop="44765"/>
            <exon e_start="44997" e_stop="45318"/>
            <exon e_start="45978" e_stop="46156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.781" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.688" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36681" e_stop="37057" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37058" i_stop="38653" i_length="1596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38654" e_stop="38817" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.781">
            <gDNA_intron_boundary i_start="38818" i_stop="38939" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38940" e_stop="39023" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39024" i_stop="40436" i_length="1413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40437" e_stop="40494" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="0.495" acc_prob="0.978">
            <gDNA_intron_boundary i_start="40495" i_stop="41061" i_length="567"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41062" e_stop="41115" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.688" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41116" i_stop="41359" i_length="244"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41360" e_stop="41431" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="41432" i_stop="41520" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41521" e_stop="41593" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.794">
            <gDNA_intron_boundary i_start="41594" i_stop="44592" i_length="2999"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44593" e_stop="44765" e_length="173"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="44766" i_stop="44996" i_length="231"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44997" e_stop="45318" e_length="322"/>
          </exon>
          <intron i_serial="9" don_prob="0.944" acc_prob="0.984">
            <gDNA_intron_boundary i_start="45319" i_stop="45977" i_length="659"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="45978" e_stop="46156" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36681" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36682" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36688" stop="37057"/>
              <exon start="38654" stop="38817"/>
              <exon start="38940" stop="38973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38992" stop="39023"/>
              <exon start="40437" stop="40494"/>
              <exon start="41062" stop="41115"/>
              <exon start="41360" stop="41431"/>
              <exon start="41521" stop="41593"/>
              <exon start="44593" stop="44765"/>
              <exon start="44997" stop="45168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45048" stop="45318"/>
              <exon start="45978" stop="46156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCGGAAGTTACTAAAATTCTCCAACCAGTTCTTCTTCCTCCTTTCTTCCATAAACTAGACGGAACCACTAATTCCCATTTTAGATTGTGTAGAAGAAACAGACGCAACATCAGTATCCGTTGTTCTTCAATTTCTACAACTGAAACTAACAAATCCACAAAGACTCAGAACATTCCATGGGGTTGCGAGACTGATTCTATAGAAAATGCGTCCAATTTGCAGAAATGGTTGACGGAATCAGGGCTTCCTGCTCAAAAATTGGACTTACAAAGAGTGAATGTTGGAGAAAGAGGACTTGTTGCTAACAACAATATTAGGAAAGGGGAAAGGCTGCTTTTTGTTCCTCCTTCACTTGTCATCACTGCTGATTCG : AAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAATATAATGTACCAGATTGGCCTTTTATTGCTACATATTTAATAAGTGAGGCAAGCCTCATGAAGTCTTCAAGATGGAGCAACTACATATCTGCCTTGCCTAGGCAGCCTTACTCTCTCTTATACTG : GACTCAATCGGAGTTAGATAGGTACTTGGAAGCATCACAAATAAGACAGCGGGCGGTTGAAAGGATAAATAACGTCATTGGAAC : GTACAATGACTTAAGGCTCAGAATATTTTCCAAGCATCCTGATTTATTTCCTGAAGAG : ATATTCAACATAGAGACTTTCAACTGGTCATTTGGAATTCTCTTCTCACGTTTG : GTCAGGTTACCCTCTATGGATGGAAGAGTTGCGTTGGTTCCTTGGGCAGATATGTTGAATCATAATTGTGAG : GTGGAAACATTTCTTGACTATGATAAATCATCGCAAGGAATCGTCTTTACAACAGACAGGGCATATCTGCCAG : GTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCTTTCATATGGATTTGTTCCTAAAGAAGGGACCAATCCAAGCGACTCAGTTGAGGTGTCATTGGCACTTAAGAAATCTGACAAATGTTACAAAGAGAAGGTGGAAGCTCTAAAGAAGCATGGATTATCAGC : ATCAGAATGTTTTCCAGTACAAGTTACTGGTTGGCCACTGGAGTTGATGGCTTTTGCTTATCTAGTGGTCAGTCCACCTAGCATGAGCAGACAGTTTGAAGAGGTGCGATAAATCTCAATTTTGCAAGTTAGGAAACTTGAAATACATTCTTCAATTGGGAAAGAAAGTCTGAAACCAAGTCTATTACAGATGGCTGCTGCTGCATCAAACAAGGCAACATCAAAGAAAGATATCAAGTATCCAGAAATAGAAGAAGATGCATTGCAATTTATTCTCGATAGTTGTGAATCTAGCATATCAAAGTATTCCAAATTCCTTCAG : GCAAGTGGAGAAATGGATCTCGATGTAACAAACCCAAAGCAACTAAACAGAAGAGTGTTTCTGAAACAGCTAGCAGTTGACCTGTGTACAAGTGAGCGAAGGATACTCTATCGTAGCCAATATGTAAGTACAGACTCTGTTTCACATTCCAAATATCCAATAACTCTCCATAACATGTA</gDNA_template>
            <first_frame> Q  W  R  K  L  L  K  F  S  N  Q  F  F  F  L  L  S  S  I  N  *  T  E  P  L  I  P  I  L  D  C  V  E  E  T  D  A  T  S  V  S  V  V  L  Q  F  L  Q  L  K  L  T  N  P  Q  R  L  R  T  F  H  G  V  A  R  L  I  L  *  K  M  R  P  I  C  R  N  G  *  R  N  Q  G  F  L  L  K  N  W  T  Y  K  E  *  M  L  E  K  E  D  L  L  L  T  T  I  L  G  K  G  K  G  C  F  L  F  L  L  H  L  S  S  L  L  I  R :   N  G  A  I  Q  M  L  V  M  F  *  N  N  I  M  Y  Q  I  G  L  L  L  L  H  I  *  *  V  R  Q  A  S  *  S  L  Q  D  G  A  T  T  Y  L  P  C  L  G  S  L  T  L  S  Y  T   : G  L  N  R  S  *  I  G  T  W  K  H  H  K  *  D  S  G  R  L  K  G  *  I  T  S  L  E   : R  T  M  T  *  G  S  E  Y  F  P  S  I  L  I  Y  F  L  K  R :   Y  S  T  *  R  L  S  T  G  H  L  E  F  S  S  H  V  W :   S  G  Y  P  L  W  M  E  E  L  R  W  F  L  G  Q  I  C  *  I  I  I  V  R :   W  K  H  F  L  T  M  I  N  H  R  K  E  S  S  L  Q  Q  T  G  H  I  C  Q  :  V  F  I  S  Y  G  R  K  S  N  G  E  L  L  L  S  Y  G  F  V  P  K  E  G  T  N  P  S  D  S  V  E  V  S  L  A  L  K  K  S  D  K  C  Y  K  E  K  V  E  A  L  K  K  H  G  L  S  A :   S  E  C  F  P  V  Q  V  T  G  W  P  L  E  L  M  A  F  A  Y  L  V  V  S  P  P  S  M  S  R  Q  F  E  E  V  R  *  I  S  I  L  Q  V  R  K  L  E  I  H  S  S  I  G  K  E  S  L  K  P  S  L  L  Q  M  A  A  A  A  S  N  K  A  T  S  K  K  D  I  K  Y  P  E  I  E  E  D  A  L  Q  F  I  L  D  S  C  E  S  S  I  S  K  Y  S  K  F  L  Q  :  A  S  G  E  M  D  L  D  V  T  N  P  K  Q  L  N  R  R  V  F  L  K  Q  L  A  V  D  L  C  T  S  E  R  R  I  L  Y  R  S  Q  Y  V  S  T  D  S  V  S  H  S  K  Y  P  I  T  L  H  N  M   </first_frame>
            <second_frame>  N  G  G  S  Y  *  N  S  P  T  S  S  S  S  S  F  L  P  *  T  R  R  N  H  *  F  P  F  *  I  V  *  K  K  Q  T  Q  H  Q  Y  P  L  F  F  N  F  Y  N  *  N  *  Q  I  H  K  D  S  E  H  S  M  G  L  R  D  *  F  Y  R  K  C  V  Q  F  A  E  M  V  D  G  I  R  A  S  C  S  K  I  G  L  T  K  S  E  C  W  R  K  R  T  C  C  *  Q  Q  Y  *  E  R  G  K  A  A  F  C  S  S  F  T  C  H  H  C  *  F   : E  M  E  Q  F  R  C  W  *  C  F  K  T  I  *  C  T  R  L  A  F  Y  C  Y  I  F  N  K  *  G  K  P  H  E  V  F  K  M  E  Q  L  H  I  C  L  A  *  A  A  L  L  S  L  I  L  :  D  S  I  G  V  R  *  V  L  G  S  I  T  N  K  T  A  G  G  *  K  D  K  *  R  H  W  N  :  V  Q  *  L  K  A  Q  N  I  F  Q  A  S  *  F  I  S  *  R   : D  I  Q  H  R  D  F  Q  L  V  I  W  N  S  L  L  T  F   : G  Q  V  T  L  Y  G  W  K  S  C  V  G  S  L  G  R  Y  V  E  S  *  L  *   : G  G  N  I  S  *  L  *  *  I  I  A  R  N  R  L  Y  N  R  Q  G  I  S  A  R :   F  L  Y  H  M  E  G  N  L  M  E  N  F  C  F  H  M  D  L  F  L  K  K  G  P  I  Q  A  T  Q  L  R  C  H  W  H  L  R  N  L  T  N  V  T  K  R  R  W  K  L  *  R  S  M  D  Y  Q   : H  Q  N  V  F  Q  Y  K  L  L  V  G  H  W  S  *  W  L  L  L  I  *  W  S  V  H  L  A  *  A  D  S  L  K  R  C  D  K  S  Q  F  C  K  L  G  N  L  K  Y  I  L  Q  L  G  K  K  V  *  N  Q  V  Y  Y  R  W  L  L  L  H  Q  T  R  Q  H  Q  R  K  I  S  S  I  Q  K  *  K  K  M  H  C  N  L  F  S  I  V  V  N  L  A  Y  Q  S  I  P  N  S  F  R :   Q  V  E  K  W  I  S  M  *  Q  T  Q  S  N  *  T  E  E  C  F  *  N  S  *  Q  L  T  C  V  Q  V  S  E  G  Y  S  I  V  A  N  M  *  V  Q  T  L  F  H  I  P  N  I  Q  *  L  S  I  T  C  </second_frame>
            <third_frame>   M  A  E  V  T  K  I  L  Q  P  V  L  L  P  P  F  F  H  K  L  D  G  T  T  N  S  H  F  R  L  C  R  R  N  R  R  N  I  S  I  R  C  S  S  I  S  T  T  E  T  N  K  S  T  K  T  Q  N  I  P  W  G  C  E  T  D  S  I  E  N  A  S  N  L  Q  K  W  L  T  E  S  G  L  P  A  Q  K  L  D  L  Q  R  V  N  V  G  E  R  G  L  V  A  N  N  N  I  R  K  G  E  R  L  L  F  V  P  P  S  L  V  I  T  A  D  S  :  K  W  S  N  S  D  A  G  D  V  L  K  Q  Y  N  V  P  D  W  P  F  I  A  T  Y  L  I  S  E  A  S  L  M  K  S  S  R  W  S  N  Y  I  S  A  L  P  R  Q  P  Y  S  L  L  Y  W :   T  Q  S  E  L  D  R  Y  L  E  A  S  Q  I  R  Q  R  A  V  E  R  I  N  N  V  I  G  T :   Y  N  D  L  R  L  R  I  F  S  K  H  P  D  L  F  P  E  E  :  I  F  N  I  E  T  F  N  W  S  F  G  I  L  F  S  R  L  :  V  R  L  P  S  M  D  G  R  V  A  L  V  P  W  A  D  M  L  N  H  N  C  E  :  V  E  T  F  L  D  Y  D  K  S  S  Q  G  I  V  F  T  T  D  R  A  Y  L  P   : G  F  Y  I  I  W  K  E  I  *  W  R  T  F  A  F  I  W  I  C  S  *  R  R  D  Q  S  K  R  L  S  *  G  V  I  G  T  *  E  I  *  Q  M  L  Q  R  E  G  G  S  S  K  E  A  W  I  I  S  :  I  R  M  F  S  S  T  S  Y  W  L  A  T  G  V  D  G  F  C  L  S  S  G  Q  S  T  *  H  E  Q  T  V  *  R  G  A  I  N  L  N  F  A  S  *  E  T  *  N  T  F  F  N  W  E  R  K  S  E  T  K  S  I  T  D  G  C  C  C  I  K  Q  G  N  I  K  E  R  Y  Q  V  S  R  N  R  R  R  C  I  A  I  Y  S  R  *  L  *  I  *  H  I  K  V  F  Q  I  P  S   : G  K  W  R  N  G  S  R  C  N  K  P  K  A  T  K  Q  K  S  V  S  E  T  A  S  S  *  P  V  Y  K  *  A  K  D  T  L  S  *  P  I  C  K  Y  R  L  C  F  T  F  Q  I  S  N  N  S  P  *  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36683" stop="37057"/>
                    <exon start="38654" stop="38817"/>
                    <exon start="38940" stop="39023"/>
                    <exon start="40437" stop="40494"/>
                    <exon start="41062" stop="41115"/>
                    <exon start="41360" stop="41431"/>
                    <exon start="41521" stop="41593"/>
                    <exon start="44593" stop="44621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>906</number_coding_nucleotides>
                  <number_encoded_amino_acids>302</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAEVTKILQPVLLPPFFHKLDGTTNSHFRLCRRNRRNISIRCSSISTTETNKSTKTQNIPWGCETDSIENASNLQKWLTESGLPAQKLDLQRVNVGERGLVANNNIRKGERLLFVPPSLVITADSKWSNSDAGDVLKQYNVPDWPFIATYLISEASLMKSSRWSNYISALPRQPYSLLYWTQSELDRYLEASQIRQRAVERINNVIGTYNDLRLRIFSKHPDLFPEEIFNIETFNWSFGILFSRLVRLPSMDGRVALVPWADMLNHNCEVETFLDYDKSSQGIVFTTDRAYLPGFYIIWKEI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45109" stop="45318"/>
                    <exon start="45978" stop="46154"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISILQVRKLEIHSSIGKESLKPSLLQMAAAASNKATSKKDIKYPEIEEDALQFILDSCESSISKYSKFLQASGEMDLDVTNPKQLNRRVFLKQLAVDLCTSERRILYRSQYVSTDSVSHSKYPITLHNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="37910" e_stop="38693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="37910" e_stop="38693" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37910" stop="38693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37911" stop="38568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCACACACTGTCACTGTAGCCCTCTCCACCTAGAAGGAGTTCAATAACTAGATGGGATCTATCATTTACTCCAAATTTTTTTCTTCCAAAAGGTTATACTAGCCGCACATGCATATCGCATCTCTTAACAAATAAAGTTGAATTCCTTTCTACAACAGATACTTCTTATACTTAACATAGCACTGAATTATTTTACCTTGTTTGTATTCTTAGACATATACTATTAGTGCAGCTCAGAGACAAAATGGTTACAAATGGAACTTAACTGTTACTTAAATAATTATCTAACTAGAGGTAATGGAAGAAATAGTTATATTAAAATCTTTTAGAGTTTCTGGTTTATATACTAAGCCTATACATGTGCAACTGTAGGTTCTATAGTAATATAAGTAACTGCAAGATGAGGGTGTTTTGTTTCTCCTTCTTTAGTTGTGGTTGGTTCAGTGAAGAGGAAAAATGAACAAAGGGAAACAGTGTTGCATGTGTTTAAAAATGGTTGATGTTTAGATACTTAAACTTACATTTCCAACATTGTTTGTTTTTGAGAGAAGACACGAGCTCTCCAGGTTGGATCAATAATCAGCTTCCCAATCAGGCAAATCAGATGGGAGGGACATATCTTGATTCTTAGTTTTGTAATCTAATATGGATTTGGGTCTTAATTAAAACAAAATATACAAATACAGATTTTGGTACCAACAGAAGTTTTTTTTCTTTATCTTGATATGTGCTGGAGATGCCAGAAATGGAGCAATTCAGATGCTGGTGATGTTTTAAAACAAT</gDNA_template>
            <first_frame> R  T  H  C  H  C  S  P  L  H  L  E  G  V  Q  *  L  D  G  I  Y  H  L  L  Q  I  F  F  F  Q  K  V  I  L  A  A  H  A  Y  R  I  S  *  Q  I  K  L  N  S  F  L  Q  Q  I  L  L  I  L  N  I  A  L  N  Y  F  T  L  F  V  F  L  D  I  Y  Y  *  C  S  S  E  T  K  W  L  Q  M  E  L  N  C  Y  L  N  N  Y  L  T  R  G  N  G  R  N  S  Y  I  K  I  F  *  S  F  W  F  I  Y  *  A  Y  T  C  A  T  V  G  S  I  V  I  *  V  T  A  R  *  G  C  F  V  S  P  S  L  V  V  V  G  S  V  K  R  K  N  E  Q  R  E  T  V  L  H  V  F  K  N  G  *  C  L  D  T  *  T  Y  I  S  N  I  V  C  F  *  E  K  T  R  A  L  Q  V  G  S  I  I  S  F  P  I  R  Q  I  R  W  E  G  H  I  L  I  L  S  F  V  I  *  Y  G  F  G  S  *  L  K  Q  N  I  Q  I  Q  I  L  V  P  T  E  V  F  F  L  Y  L  D  M  C  W  R  C  Q  K  W  S  N  S  D  A  G  D  V  L  K  Q  </first_frame>
            <second_frame>  A  H  T  V  T  V  A  L  S  T  *  K  E  F  N  N  *  M  G  S  I  I  Y  S  K  F  F  S  S  K  R  L  Y  *  P  H  M  H  I  A  S  L  N  K  *  S  *  I  P  F  Y  N  R  Y  F  L  Y  L  T  *  H  *  I  I  L  P  C  L  Y  S  *  T  Y  T  I  S  A  A  Q  R  Q  N  G  Y  K  W  N  L  T  V  T  *  I  I  I  *  L  E  V  M  E  E  I  V  I  L  K  S  F  R  V  S  G  L  Y  T  K  P  I  H  V  Q  L  *  V  L  *  *  Y  K  *  L  Q  D  E  G  V  L  F  L  L  L  *  L  W  L  V  Q  *  R  G  K  M  N  K  G  K  Q  C  C  M  C  L  K  M  V  D  V  *  I  L  K  L  T  F  P  T  L  F  V  F  E  R  R  H  E  L  S  R  L  D  Q  *  S  A  S  Q  S  G  K  S  D  G  R  D  I  S  *  F  L  V  L  *  S  N  M  D  L  G  L  N  *  N  K  I  Y  K  Y  R  F  W  Y  Q  Q  K  F  F  F  F  I  L  I  C  A  G  D  A  R  N  G  A  I  Q  M  L  V  M  F  *  N  N </second_frame>
            <third_frame>   H  T  L  S  L  *  P  S  P  P  R  R  S  S  I  T  R  W  D  L  S  F  T  P  N  F  F  L  P  K  G  Y  T  S  R  T  C  I  S  H  L  L  T  N  K  V  E  F  L  S  T  T  D  T  S  Y  T  *  H  S  T  E  L  F  Y  L  V  C  I  L  R  H  I  L  L  V  Q  L  R  D  K  M  V  T  N  G  T  *  L  L  L  K  *  L  S  N  *  R  *  W  K  K  *  L  Y  *  N  L  L  E  F  L  V  Y  I  L  S  L  Y  M  C  N  C  R  F  Y  S  N  I  S  N  C  K  M  R  V  F  C  F  S  F  F  S  C  G  W  F  S  E  E  E  K  *  T  K  G  N  S  V  A  C  V  *  K  W  L  M  F  R  Y  L  N  L  H  F  Q  H  C  L  F  L  R  E  D  T  S  S  P  G  W  I  N  N  Q  L  P  N  Q  A  N  Q  M  G  G  T  Y  L  D  S  *  F  C  N  L  I  W  I  W  V  L  I  K  T  K  Y  T  N  T  D  F  G  T  N  R  S  F  F  S  L  S  *  Y  V  L  E  M  P  E  M  E  Q  F  R  C  W  *  C  F  K  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="43945" e_stop="44636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="43945" e_stop="44636" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43945" stop="44636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479609" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATACAAATAATACAAAAGCAATAAATTACTATTACAACAAACACATGACAAATTAATTAGCAAGATAAACAGTAAAATGTAACTGAGTCTCCACACCATCTATTTGTTGATTTGCAGCTGAAGAAGTCTTGATAGTAGCAAATCCCTTAGCATTTACATACTTTCCAGTACCACCCATGATTGTAAGATGTGATTGAAAATCTCTTAACTCTGTGAACCCCAAAGAAGCTCAAACTATCACTATAACTTCCACTATGAAACATTACTGTAAATGCCATAGTTCCGGCTAGTTTCATCTTCTGAACTAGAAATGTAAAATCCTTGAGATTTTCCAACTACTCCTGAGTTGAGCTCATGAACTTCTGTTAATTTGTCGTCGAATACTGTCATTGTACCAAACATGAGTTTTTGGAAAGTTACTCCTGATCCTAATTGAGCCATGTTTAGGGCAGGGTATCCGTTACCTCCACCGCTGATGTTGTTGTTGTTACACCCTTATTTATTTTTACCCCGCCAGTATGTAACATAAAATTTTATATTAGTATAACGTAATTGATGAAAGCTCCTCATAGAACCACTTGATGTTTAGGATAATCATGCTAGAGAATGCCTTGCATACATAACATTTAAGCTTTGATTGTACAGGTTTTTATATCATATGGAAGGAAATCTAATGGAGAACTTTTGCT</gDNA_template>
            <first_frame> L  I  Q  I  I  Q  K  Q  *  I  T  I  T  T  N  T  *  Q  I  N  *  Q  D  K  Q  *  N  V  T  E  S  P  H  H  L  F  V  D  L  Q  L  K  K  S  *  *  *  Q  I  P  *  H  L  H  T  F  Q  Y  H  P  *  L  *  D  V  I  E  N  L  L  T  L  *  T  P  K  K  L  K  L  S  L  *  L  P  L  *  N  I  T  V  N  A  I  V  P  A  S  F  I  F  *  T  R  N  V  K  S  L  R  F  S  N  Y  S  *  V  E  L  M  N  F  C  *  F  V  V  E  Y  C  H  C  T  K  H  E  F  L  E  S  Y  S  *  S  *  L  S  H  V  *  G  R  V  S  V  T  S  T  A  D  V  V  V  V  T  P  L  F  I  F  T  P  P  V  C  N  I  K  F  Y  I  S  I  T  *  L  M  K  A  P  H  R  T  T  *  C  L  G  *  S  C  *  R  M  P  C  I  H  N  I  *  A  L  I  V  Q  V  F  I  S  Y  G  R  K  S  N  G  E  L  L   </first_frame>
            <second_frame>  S  Y  K  *  Y  K  S  N  K  L  L  L  Q  Q  T  H  D  K  L  I  S  K  I  N  S  K  M  *  L  S  L  H  T  I  Y  L  L  I  C  S  *  R  S  L  D  S  S  K  S  L  S  I  Y  I  L  S  S  T  T  H  D  C  K  M  *  L  K  I  S  *  L  C  E  P  Q  R  S  S  N  Y  H  Y  N  F  H  Y  E  T  L  L  *  M  P  *  F  R  L  V  S  S  S  E  L  E  M  *  N  P  *  D  F  P  T  T  P  E  L  S  S  *  T  S  V  N  L  S  S  N  T  V  I  V  P  N  M  S  F  W  K  V  T  P  D  P  N  *  A  M  F  R  A  G  Y  P  L  P  P  P  L  M  L  L  L  L  H  P  Y  L  F  L  P  R  Q  Y  V  T  *  N  F  I  L  V  *  R  N  *  *  K  L  L  I  E  P  L  D  V  *  D  N  H  A  R  E  C  L  A  Y  I  T  F  K  L  *  L  Y  R  F  L  Y  H  M  E  G  N  L  M  E  N  F  C  </second_frame>
            <third_frame>   H  T  N  N  T  K  A  I  N  Y  Y  Y  N  K  H  M  T  N  *  L  A  R  *  T  V  K  C  N  *  V  S  T  P  S  I  C  *  F  A  A  E  E  V  L  I  V  A  N  P  L  A  F  T  Y  F  P  V  P  P  M  I  V  R  C  D  *  K  S  L  N  S  V  N  P  K  E  A  Q  T  I  T  I  T  S  T  M  K  H  Y  C  K  C  H  S  S  G  *  F  H  L  L  N  *  K  C  K  I  L  E  I  F  Q  L  L  L  S  *  A  H  E  L  L  L  I  C  R  R  I  L  S  L  Y  Q  T  *  V  F  G  K  L  L  L  I  L  I  E  P  C  L  G  Q  G  I  R  Y  L  H  R  *  C  C  C  C  Y  T  L  I  Y  F  Y  P  A  S  M  *  H  K  I  L  Y  *  Y  N  V  I  D  E  S  S  S  *  N  H  L  M  F  R  I  I  M  L  E  N  A  L  H  T  *  H  L  S  F  D  C  T  G  F  Y  I  I  W  K  E  I  *  W  R  T  F  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46673" PGL_stop="46408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46673" e_stop="46408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="46673" e_stop="46408" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46673" stop="46408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392477" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGAGATTACAAATAATCTTGAAACTAATTAAGCTGGAAGGTAGAATAGCAAATTATACACTGAGAGCAGAGATTTTCAGGAAACTCCAACTTGTGTTGTAGAATTGATCATTGAGAAAGTGGCAAACTTTCTTGGAAAACAATTTCAAAAACCAGGAAGAGTCATTCTTTAAGTCATTTGAAAAGGTTCTTAAGTCCATCAAATAAATTCAGAGCCCTCAATTCTCCACTCCTTATGTCCCTCAATCTTCTCCTCAATATCTG</gDNA_template>
            <first_frame> F  G  D  Y  K  *  S  *  N  *  L  S  W  K  V  E  *  Q  I  I  H  *  E  Q  R  F  S  G  N  S  N  L  C  C  R  I  D  H  *  E  S  G  K  L  S  W  K  T  I  S  K  T  R  K  S  H  S  L  S  H  L  K  R  F  L  S  P  S  N  K  F  R  A  L  N  S  P  L  L  M  S  L  N  L  L  L  N  I   </first_frame>
            <second_frame>  L  E  I  T  N  N  L  E  T  N  *  A  G  R  *  N  S  K  L  Y  T  E  S  R  D  F  Q  E  T  P  T  C  V  V  E  L  I  I  E  K  V  A  N  F  L  G  K  Q  F  Q  K  P  G  R  V  I  L  *  V  I  *  K  G  S  *  V  H  Q  I  N  S  E  P  S  I  L  H  S  L  C  P  S  I  F  S  S  I  S  </second_frame>
            <third_frame>   W  R  L  Q  I  I  L  K  L  I  K  L  E  G  R  I  A  N  Y  T  L  R  A  E  I  F  R  K  L  Q  L  V  L  *  N  *  S  L  R  K  W  Q  T  F  L  E  N  N  F  K  N  Q  E  E  S  F  F  K  S  F  E  K  V  L  K  S  I  K  *  I  Q  S  P  Q  F  S  T  P  Y  V  P  Q  S  S  P  Q  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="51042" PGL_stop="51427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51042" e_stop="51427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="51042" e_stop="51427" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51042" stop="51327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51060" stop="51427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCTTACGGAAACACGCCACGTCTTCCTGCAAGCACTCTCACATGAAAAACGAATTTGGCAGAACCATTACTTCACAAAATTTCAAATACTCCTTTTTCATCGGAGATCGGAAAAGTTTTTTTTTCCGGCAATGGTGAATTCTCGCAAACGGAAAAGGTACAATCTGGAGTACAGAGCGAGCGATGATGACTCATGGTATAGTGTACGACTCGTAATGAAAGGCCAAACAATGACTGTGAAGTATGAGGGGTATACGCAGGAATATGACGAGGTTTTTCATGCTGGAGATTTCAAGTCGAAGGAGGAGGTTGATGAGCTGGTTAAGAGGTTTAGGTCTGTGTCACCTCAGATGCAGGACAGCGAATGTGGTAGTCTCAAGGAAG</gDNA_template>
            <first_frame> E  A  Y  G  N  T  P  R  L  P  A  S  T  L  T  *  K  T  N  L  A  E  P  L  L  H  K  I  S  N  T  P  F  S  S  E  I  G  K  V  F  F  S  G  N  G  E  F  S  Q  T  E  K  V  Q  S  G  V  Q  S  E  R  *  *  L  M  V  *  C  T  T  R  N  E  R  P  N  N  D  C  E  V  *  G  V  Y  A  G  I  *  R  G  F  S  C  W  R  F  Q  V  E  G  G  G  *  *  A  G  *  E  V  *  V  C  V  T  S  D  A  G  Q  R  M  W  *  S  Q  G   </first_frame>
            <second_frame>  K  L  T  E  T  R  H  V  F  L  Q  A  L  S  H  E  K  R  I  W  Q  N  H  Y  F  T  K  F  Q  I  L  L  F  H  R  R  S  E  K  F  F  F  P  A  M  V  N  S  R  K  R  K  R  Y  N  L  E  Y  R  A  S  D  D  D  S  W  Y  S  V  R  L  V  M  K  G  Q  T  M  T  V  K  Y  E  G  Y  T  Q  E  Y  D  E  V  F  H  A  G  D  F  K  S  K  E  E  V  D  E  L  V  K  R  F  R  S  V  S  P  Q  M  Q  D  S  E  C  G  S  L  K  E  </second_frame>
            <third_frame>   S  L  R  K  H  A  T  S  S  C  K  H  S  H  M  K  N  E  F  G  R  T  I  T  S  Q  N  F  K  Y  S  F  F  I  G  D  R  K  S  F  F  F  R  Q  W  *  I  L  A  N  G  K  G  T  I  W  S  T  E  R  A  M  M  T  H  G  I  V  Y  D  S  *  *  K  A  K  Q  *  L  *  S  M  R  G  I  R  R  N  M  T  R  F  F  M  L  E  I  S  S  R  R  R  R  L  M  S  W  L  R  G  L  G  L  C  H  L  R  C  R  T  A  N  V  V  V  S  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51043" stop="51426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTETRHVFLQALSHEKRIWQNHYFTKFQILLFHRRSEKFFFPAMVNSRKRKRYNLEYRASDDDSWYSVRLVMKGQTMTVKYEGYTQEYDEVFHAGDFKSKEEVDELVKRFRSVSPQMQDSECGSLKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="62811" PGL_stop="68081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62811" e_stop="62876"/>
            <exon e_start="63608" e_stop="63686"/>
            <exon e_start="63885" e_stop="63973"/>
            <exon e_start="64876" e_stop="64968"/>
            <exon e_start="65299" e_stop="65325"/>
            <exon e_start="65451" e_stop="65537"/>
            <exon e_start="66668" e_stop="66739"/>
            <exon e_start="67051" e_stop="67181"/>
            <exon e_start="67444" e_stop="67730"/>
            <exon e_start="68065" e_stop="68081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.567" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62811" e_stop="62876" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="62877" i_stop="63607" i_length="731"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63608" e_stop="63686" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.808">
            <gDNA_intron_boundary i_start="63687" i_stop="63884" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63885" e_stop="63973" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.873">
            <gDNA_intron_boundary i_start="63974" i_stop="64875" i_length="902"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64876" e_stop="64968" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="64969" i_stop="65298" i_length="330"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65299" e_stop="65325" e_length="27"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.943">
            <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65451" e_stop="65537" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.935" acc_prob="0.964">
            <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66668" e_stop="66739" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.567">
            <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67051" e_stop="67181" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="0.812" acc_prob="0.969">
            <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67444" e_stop="67730" e_length="287"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67731" i_stop="68064" i_length="334"/>
          </intron>
          <exon e_serial="10" e_score="0.824">
            <gDNA_exon_boundary e_start="68065" e_stop="68081" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62811" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62812" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62812" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65311" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65480" stop="65537"/>
              <exon start="66668" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67730"/>
              <exon start="68065" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAG : AAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAG : ATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAG : GAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAG : TCTCTTCAGAGCGTTGTTTTCAAGGAG : GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG : TACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAG : TTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCG : GATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAA : CAAATAAAAAAAAAATA</gDNA_template>
            <first_frame> I  A  K  K  K  R  I  I  L  C  Q  R  E  M  E  R  I  Q  D  S  E  E  :  K  T  K  S  S  S  F  F  K  R  I  V  G  T  V  V  R  S  V  Q  D  D  Q  K  E  Q   : D  I  R  N  M  E  N  E  V  Q  A  L  E  E  L  S  K  Q  L  F  L  E  I  Y  E  L  R  Q  A  K  :  E  A  A  A  Y  S  R  T  W  K  G  H  L  Q  N  L  L  G  Y  V  C  S  V  Y  C  V  Y  K  M  I  K  :  S  L  Q  S  V  V  F  K  E  :  A  G  S  V  D  P  V  T  R  T  I  S  I  F  L  Q  F  F  D  I  G  I  D  V  N  L  L  S  Q  :  Y  I  S  L  M  F  I  G  V  L  I  V  V  S  V  R  G  F  L  T  N  L  M  K  :  F  F  F  A  V  S  R  V  G  S  G  S  S  S  N  V  V  L  F  L  S  E  I  M  G  M  Y  F  L  S  S  I  L  L  I  R  K  S  L  A  T  E  Y  R :   I  I  I  T  D  V  L  G  G  D  I  Q  F  D  F  Y  H  R  W  F  D  A  I  F  V  A  S  A  F  L  S  L  L  L  L  S  A  H  Y  T  A  R  K  A  D  N  K  H  P  I  D  *  T  I  F  M  S  E  D  A  K  F  Y  V  W  A  R  I  N  Y  T  I  F  F  V  M  M  Y  H  *  Y  S  S  N  S  V  *  S  K  P  S  G  F  H  L   : T  N  K  K  K  I </first_frame>
            <second_frame>  L  Q  R  K  R  E  L  F  F  V  R  E  K  W  R  G  S  K  I  Q  K  R :   K  Q  N  P  V  P  S  L  S  A  L  W  E  Q  L  Y  D  P  F  R  M  T  K  R  N  K  :  I  L  E  T  W  K  T  R  F  R  P  *  R  S  Y  Q  S  S  C  S  W  K  F  M  S  F  A  K  L  R :   K  L  L  L  I  L  E  H  G  R  V  I  C  R  I  F  W  A  M  C  V  L  S  I  V  C  I  K  *  *  S :   L  F  R  A  L  F  S  R  R :   L  V  L  *  I  L  *  Q  G  Q  S  A  Y  F  Y  S  S  L  T  *  E  L  M  S  T  Y  Y  H  S :   T  Y  L  *  C  S  L  G  C  *  L  W  C  L  *  G  A  S  *  L  T  *  *  S :   S  F  S  Q  F  P  E  L  E  V  D  H  Q  V  M  L  C  F  F  S  L  K  S  W  E  C  T  S  F  P  P  F  F  *  S  E  K  V  W  Q  L  N  I   : G  *  S  S  R  M  Y  W  V  E  T  Y  N  L  I  S  I  T  G  G  L  M  Q  Y  L  *  P  V  L  S  Y  R  C  F  C  S  L  H  T  I  Q  L  E  R  P  I  I  S  T  Q  L  I  K  P  Y  S  *  V  K  M  L  S  F  M  F  G  P  E  S  I  T  L  Y  S  L  *  *  C  T  I  D  I  V  A  I  L  Y  D  Q  S  H  L  V  F  I  *  :  Q  I  K  K  K   </second_frame>
            <third_frame>   C  K  E  K  E  N  Y  S  L  S  E  R  N  G  E  D  P  R  F  R  R   : E  N  K  I  Q  F  L  L  *  A  H  C  G  N  S  C  T  I  R  S  G  *  P  K  G  T  R :   Y  *  K  H  G  K  R  G  S  G  L  R  G  A  I  K  A  V  V  L  G  N  L  *  A  S  P  S  *   : G  S  C  C  L  F  S  N  M  E  G  S  F  A  E  S  F  G  L  C  V  F  C  L  L  C  V  *  N  D  K   : V  S  S  E  R  C  F  Q  G   : G  W  F  C  R  S  C  N  K  D  N  Q  H  I  F  T  V  L  *  H  R  N  *  C  Q  L  I  I  T   : V  H  I  S  N  V  H  W  G  V  D  C  G  V  C  K  G  L  L  D  *  L  D  E   : V  L  F  R  S  F  Q  S  W  K  W  I  I  K  *  C  C  A  F  S  L  *  N  H  G  N  V  L  P  F  L  H  S  F  D  Q  K  K  S  G  N  *  I  S  :  D  N  H  H  G  C  I  G  W  R  H  T  I  *  F  L  S  Q  V  V  *  C  N  I  C  S  Q  C  F  L  I  A  A  F  A  L  C  T  L  Y  S  S  K  G  R  *  *  A  P  N  *  L  N  H  I  H  E  *  R  C  *  V  L  C  L  G  Q  N  Q  L  H  Y  I  L  C  N  D  V  P  L  I  *  *  Q  F  C  M  I  K  A  I  W  F  S  S  N :   K  *  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62811" stop="62876"/>
                    <exon start="63608" stop="63686"/>
                    <exon start="63885" stop="63973"/>
                    <exon start="64876" stop="64968"/>
                    <exon start="65299" stop="65325"/>
                    <exon start="65451" stop="65537"/>
                    <exon start="66668" stop="66739"/>
                    <exon start="67051" stop="67181"/>
                    <exon start="67444" stop="67600"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAKKKRIILCQREMERIQDSEEKTKSSSFFKRIVGTVVRSVQDDQKEQDIRNMENEVQALEELSKQLFLEIYELRQAKEAAAYSRTWKGHLQNLLGYVCSVYCVYKMIKSLQSVVFKEAGSVDPVTRTISIFLQFFDIGIDVNLLSQYISLMFIGVLIVVSVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFLSSILLIRKSLATEYRIIITDVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTARKADNKHPID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62811" e_stop="62876"/>
            <exon e_start="63608" e_stop="63686"/>
            <exon e_start="63885" e_stop="63973"/>
            <exon e_start="64876" e_stop="64968"/>
            <exon e_start="65299" e_stop="65325"/>
            <exon e_start="65451" e_stop="65537"/>
            <exon e_start="66668" e_stop="66739"/>
            <exon e_start="67051" e_stop="67181"/>
            <exon e_start="67444" e_stop="67735"/>
            <exon e_start="68065" e_stop="68081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.808" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.567" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62811" e_stop="62876" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.993">
            <gDNA_intron_boundary i_start="62877" i_stop="63607" i_length="731"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63608" e_stop="63686" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.808">
            <gDNA_intron_boundary i_start="63687" i_stop="63884" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63885" e_stop="63973" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.873">
            <gDNA_intron_boundary i_start="63974" i_stop="64875" i_length="902"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64876" e_stop="64968" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.774">
            <gDNA_intron_boundary i_start="64969" i_stop="65298" i_length="330"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65299" e_stop="65325" e_length="27"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.943">
            <gDNA_intron_boundary i_start="65326" i_stop="65450" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65451" e_stop="65537" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.935" acc_prob="0.964">
            <gDNA_intron_boundary i_start="65538" i_stop="66667" i_length="1130"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="66668" e_stop="66739" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.567">
            <gDNA_intron_boundary i_start="66740" i_stop="67050" i_length="311"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67051" e_stop="67181" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="0.812" acc_prob="0.969">
            <gDNA_intron_boundary i_start="67182" i_stop="67443" i_length="262"/>
          </intron>
          <exon e_serial="9" e_score="0.983">
            <gDNA_exon_boundary e_start="67444" e_stop="67735" e_length="292"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="67736" i_stop="68064" i_length="329"/>
          </intron>
          <exon e_serial="10" e_score="0.824">
            <gDNA_exon_boundary e_start="68065" e_stop="68081" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62811" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62812" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62812" stop="62876"/>
              <exon start="63608" stop="63686"/>
              <exon start="63885" stop="63973"/>
              <exon start="64876" stop="64968"/>
              <exon start="65299" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65311" stop="65325"/>
              <exon start="65451" stop="65537"/>
              <exon start="66668" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66717" stop="66739"/>
              <exon start="67051" stop="67181"/>
              <exon start="67444" stop="67735"/>
              <exon start="68065" stop="68081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545278" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCAAAGAAAAAGAGAATTATTCTTTGTCAGAGAGAAATGGAGAGGATCCAAGATTCAGAAGAG : AAAACAAAATCCAGTTCCTTCTTTAAGCGCATTGTGGGAACAGTTGTACGATCCGTTCAGGATGACCAAAAGGAACAAG : ATATTAGAAACATGGAAAACGAGGTTCAGGCCTTAGAGGAGCTATCAAAGCAGTTGTTCTTGGAAATTTATGAGCTTCGCCAAGCTAAG : GAAGCTGCTGCTTATTCTCGAACATGGAAGGGTCATTTGCAGAATCTTTTGGGCTATGTGTGTTCTGTCTATTGTGTGTATAAAATGATAAAG : TCTCTTCAGAGCGTTGTTTTCAAGGAG : GCTGGTTCTGTAGATCCTGTAACAAGGACAATCAGCATATTTTTACAGTTCTTTGACATAGGAATTGATGTCAACTTATTATCACAG : TACATATCTCTAATGTTCATTGGGGTGTTGATTGTGGTGTCTGTAAGGGGCTTCTTGACTAACTTGATGAAG : TTCTTTTTCGCAGTTTCCAGAGTTGGAAGTGGATCATCAAGTAATGTTGTGCTTTTTCTCTCTGAAATCATGGGAATGTACTTCCTTTCCTCCATTCTTTTGATCAGAAAAAGTCTGGCAACTGAATATCG : GATAATCATCACGGATGTATTGGGTGGAGACATACAATTTGATTTCTATCACAGGTGGTTTGATGCAATATTTGTAGCCAGTGCTTTCTTATCGCTGCTTTTGCTCTCTGCACACTATACAGCTCGAAAGGCCGATAATAAGCACCCAATTGATTAAACCATATTCATGAGTGAAGATGCTAAGTTTTATGTTTGGGCCAGAATCAATTACACTATATTCTTTGTAATGATGTACCATTGATATAGTAGCAATTCTGTATGATCAAAGCCATCTGGTTTTCATCTAATTGAT : CAAATAAAAAAAAAATA</gDNA_template>
            <first_frame> I  A  K  K  K  R  I  I  L  C  Q  R  E  M  E  R  I  Q  D  S  E  E  :  K  T  K  S  S  S  F  F  K  R  I  V  G  T  V  V  R  S  V  Q  D  D  Q  K  E  Q   : D  I  R  N  M  E  N  E  V  Q  A  L  E  E  L  S  K  Q  L  F  L  E  I  Y  E  L  R  Q  A  K  :  E  A  A  A  Y  S  R  T  W  K  G  H  L  Q  N  L  L  G  Y  V  C  S  V  Y  C  V  Y  K  M  I  K  :  S  L  Q  S  V  V  F  K  E  :  A  G  S  V  D  P  V  T  R  T  I  S  I  F  L  Q  F  F  D  I  G  I  D  V  N  L  L  S  Q  :  Y  I  S  L  M  F  I  G  V  L  I  V  V  S  V  R  G  F  L  T  N  L  M  K  :  F  F  F  A  V  S  R  V  G  S  G  S  S  S  N  V  V  L  F  L  S  E  I  M  G  M  Y  F  L  S  S  I  L  L  I  R  K  S  L  A  T  E  Y  R :   I  I  I  T  D  V  L  G  G  D  I  Q  F  D  F  Y  H  R  W  F  D  A  I  F  V  A  S  A  F  L  S  L  L  L  L  S  A  H  Y  T  A  R  K  A  D  N  K  H  P  I  D  *  T  I  F  M  S  E  D  A  K  F  Y  V  W  A  R  I  N  Y  T  I  F  F  V  M  M  Y  H  *  Y  S  S  N  S  V  *  S  K  P  S  G  F  H  L  I  D  :  Q  I  K  K  K   </first_frame>
            <second_frame>  L  Q  R  K  R  E  L  F  F  V  R  E  K  W  R  G  S  K  I  Q  K  R :   K  Q  N  P  V  P  S  L  S  A  L  W  E  Q  L  Y  D  P  F  R  M  T  K  R  N  K  :  I  L  E  T  W  K  T  R  F  R  P  *  R  S  Y  Q  S  S  C  S  W  K  F  M  S  F  A  K  L  R :   K  L  L  L  I  L  E  H  G  R  V  I  C  R  I  F  W  A  M  C  V  L  S  I  V  C  I  K  *  *  S :   L  F  R  A  L  F  S  R  R :   L  V  L  *  I  L  *  Q  G  Q  S  A  Y  F  Y  S  S  L  T  *  E  L  M  S  T  Y  Y  H  S :   T  Y  L  *  C  S  L  G  C  *  L  W  C  L  *  G  A  S  *  L  T  *  *  S :   S  F  S  Q  F  P  E  L  E  V  D  H  Q  V  M  L  C  F  F  S  L  K  S  W  E  C  T  S  F  P  P  F  F  *  S  E  K  V  W  Q  L  N  I   : G  *  S  S  R  M  Y  W  V  E  T  Y  N  L  I  S  I  T  G  G  L  M  Q  Y  L  *  P  V  L  S  Y  R  C  F  C  S  L  H  T  I  Q  L  E  R  P  I  I  S  T  Q  L  I  K  P  Y  S  *  V  K  M  L  S  F  M  F  G  P  E  S  I  T  L  Y  S  L  *  *  C  T  I  D  I  V  A  I  L  Y  D  Q  S  H  L  V  F  I  *  L  I :   K  *  K  K  N  </second_frame>
            <third_frame>   C  K  E  K  E  N  Y  S  L  S  E  R  N  G  E  D  P  R  F  R  R   : E  N  K  I  Q  F  L  L  *  A  H  C  G  N  S  C  T  I  R  S  G  *  P  K  G  T  R :   Y  *  K  H  G  K  R  G  S  G  L  R  G  A  I  K  A  V  V  L  G  N  L  *  A  S  P  S  *   : G  S  C  C  L  F  S  N  M  E  G  S  F  A  E  S  F  G  L  C  V  F  C  L  L  C  V  *  N  D  K   : V  S  S  E  R  C  F  Q  G   : G  W  F  C  R  S  C  N  K  D  N  Q  H  I  F  T  V  L  *  H  R  N  *  C  Q  L  I  I  T   : V  H  I  S  N  V  H  W  G  V  D  C  G  V  C  K  G  L  L  D  *  L  D  E   : V  L  F  R  S  F  Q  S  W  K  W  I  I  K  *  C  C  A  F  S  L  *  N  H  G  N  V  L  P  F  L  H  S  F  D  Q  K  K  S  G  N  *  I  S  :  D  N  H  H  G  C  I  G  W  R  H  T  I  *  F  L  S  Q  V  V  *  C  N  I  C  S  Q  C  F  L  I  A  A  F  A  L  C  T  L  Y  S  S  K  G  R  *  *  A  P  N  *  L  N  H  I  H  E  *  R  C  *  V  L  C  L  G  Q  N  Q  L  H  Y  I  L  C  N  D  V  P  L  I  *  *  Q  F  C  M  I  K  A  I  W  F  S  S  N  *   : S  N  K  K  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62811" stop="62876"/>
                    <exon start="63608" stop="63686"/>
                    <exon start="63885" stop="63973"/>
                    <exon start="64876" stop="64968"/>
                    <exon start="65299" stop="65325"/>
                    <exon start="65451" stop="65537"/>
                    <exon start="66668" stop="66739"/>
                    <exon start="67051" stop="67181"/>
                    <exon start="67444" stop="67600"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAKKKRIILCQREMERIQDSEEKTKSSSFFKRIVGTVVRSVQDDQKEQDIRNMENEVQALEELSKQLFLEIYELRQAKEAAAYSRTWKGHLQNLLGYVCSVYCVYKMIKSLQSVVFKEAGSVDPVTRTISIFLQFFDIGIDVNLLSQYISLMFIGVLIVVSVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFLSSILLIRKSLATEYRIIITDVLGGDIQFDFYHRWFDAIFVASAFLSLLLLSAHYTARKADNKHPID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="86826" PGL_stop="73483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86826" e_stop="86770"/>
            <exon e_start="85836" e_stop="85775"/>
            <exon e_start="84742" e_stop="84644"/>
            <exon e_start="84537" e_stop="84364"/>
            <exon e_start="84245" e_stop="84140"/>
            <exon e_start="83536" e_stop="83398"/>
            <exon e_start="82953" e_stop="82876"/>
            <exon e_start="82767" e_stop="82748"/>
            <exon e_start="81725" e_stop="81661"/>
            <exon e_start="81514" e_stop="81404"/>
            <exon e_start="81324" e_stop="81283"/>
            <exon e_start="81036" e_stop="80950"/>
            <exon e_start="80802" e_stop="80694"/>
            <exon e_start="80371" e_stop="80189"/>
            <exon e_start="77333" e_stop="77175"/>
            <exon e_start="75137" e_stop="74955"/>
            <exon e_start="73726" e_stop="73483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.844" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.966"/>
          <exon-intron don_prob="0.956" acc_prob="0.582" e_score="0.989"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86826" e_stop="86770" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85836" e_stop="85775" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84742" e_stop="84644" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84537" e_stop="84364" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84245" e_stop="84140" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.952">
            <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="83536" e_stop="83398" e_length="139"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="82953" e_stop="82876" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82767" e_stop="82748" e_length="20"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82747" i_stop="81726" i_length="1022"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81725" e_stop="81661" e_length="65"/>
          </exon>
          <intron i_serial="9" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="81514" e_stop="81404" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81324" e_stop="81283" e_length="42"/>
          </exon>
          <intron i_serial="11" don_prob="0.967" acc_prob="0.984">
            <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80950" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="80802" e_stop="80694" e_length="109"/>
          </exon>
          <intron i_serial="13" don_prob="0.534" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322"/>
          </intron>
          <exon e_serial="14" e_score="0.995">
            <gDNA_exon_boundary e_start="80371" e_stop="80189" e_length="183"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.844">
            <gDNA_intron_boundary i_start="80188" i_stop="77334" i_length="2855"/>
          </intron>
          <exon e_serial="15" e_score="0.966">
            <gDNA_exon_boundary e_start="77333" e_stop="77175" e_length="159"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="77174" i_stop="75138" i_length="2037"/>
          </intron>
          <exon e_serial="16" e_score="0.989">
            <gDNA_exon_boundary e_start="75137" e_stop="74955" e_length="183"/>
          </exon>
          <intron i_serial="16" don_prob="0.956" acc_prob="0.582">
            <gDNA_intron_boundary i_start="74954" i_stop="73727" i_length="1228"/>
          </intron>
          <exon e_serial="17" e_score="0.984">
            <gDNA_exon_boundary e_start="73726" e_stop="73483" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86826" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86826" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86823" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86821" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86818" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86817" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86817" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85803" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82952" stop="82876"/>
              <exon start="82767" stop="82748"/>
              <exon start="81725" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
              <exon start="77333" stop="77303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328441" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77319" stop="77175"/>
              <exon start="75137" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547391" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77319" stop="77175"/>
              <exon start="75137" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG : ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG : ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG : GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG : CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG : GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG : GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG : GTTGAGGTGCCTGGAGGAAG : AGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG : GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT : GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA : GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG : GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG : GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA : AGACAGAAAGAAGAAAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTTTTTTATTTATACACCAAAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGGTTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCG : GAAAAAGGCCAGCCTCTTCCTAAGTTCGGCGAATGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCA : AAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAATTTTTGCTGTTGTATTTTGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATGATATATATATTTGTTTATTTTTTTT</gDNA_template>
            <first_frame> S  L  C  L  C  S  A  P  L  K  S  S  K  S  L  S  T  S  E  :  T  S  I  F  I  H  I  H  N  G  S  S  S  S  R  Y  H  Q  A  *  R :   C  L  H  C  W  C  C  P  Y  S  N  G  G  L  P  W  F  S  F  L  V  A  S  H  K  T  W  I  N  S  H  *  G :   C  S  *  E  S  K  C  *  S  I  T  S  R  R  S  L  L  W  K  C  P  Q  C  K  P  G  T  G  S  C  *  A  S  C  I  G  C  R  T  T  Q  Y  G  G  L  H  H  C  E  Q  S  L  C  I  W  I  E  S :   N  Y  A  C  S  S  K  Y  S  V  G  H  Q  *  G  G  C  G  W  W  N  G  K  H  V  Q  C  S  Q  I  H  C  R  S  K  :  E  G  I  S  S  W  T  *  *  S  G  *  W  N  A  *  R  W  F  D  *  C  L  *  G  L  W  Y  G  S  L  C  R  N  M  C  F  *  S  *  N  Y  K  R  G  A   : G  *  L  C  S  S  K  F  R  T  W  N  C  C  S  G  S  R  C  F  R  M  G  D  C  T   : G  *  G  A  W  R  K  :  R  R  L  *  N  *  D  *  M  L  L  E  R  S  Q  A  T  R  M  L  L  R :   N  L  N  Y  S  Q  L  H  L  L  *  Q  F  P  K  L  S  K  V  L  A  *  R  L  L  K  L  I  T  M  K  *  M  K  P  L  L :   W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q :   K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G :   C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  :  V  S  V  S  D  Y  L  *  *  T  V  L  A  T  D  *  I  *  Q  G  V  F  N  Q  R  D  D  S  V  T  S  T  S  S  F  S  F  S  S  F  L  C  N  V  N  L  R  R  F  L  F  F  K  N  K  *  K  V  L  H  E  :  R  Q  K  E  E  K  G  E  N  F  S  F  L  F  F  F  F  Y  L  Y  T  K  K  R  F  T  K  N  Q  E  K  G  H  K  Q  F  C  F  S  K  G  F  S  L  C  F  C  L  K  E  F  M  A  :  E  K  G  Q  P  L  P  K  F  G  E  W  D  V  N  D  P  S  S  A  E  G  F  T  V  I  F  N  K  A  R  N  E  K  K  T  G  G  K  V  D  S  P  P  K  G  D  S  A  Y  K  N  K  A  T  L  G  K  P  Q  S  :  K  K  W  F  C  C  M  Q  S  T  A  A  E  S  *  T  S  L  S  F  Y  N  L  N  W  E  M  M  L  V  W  N  Q  T  R  Q  V  Y  *  N  T  G  A  V  V  K  M  *  Q  V  I  F  A  V  V  F  W  I  I  Y  S  *  N  A  G  F  C  Y  Q  K  I  F  M  I  Y  I  F  V  Y  F  F  </first_frame>
            <second_frame>  H  F  V  C  A  L  L  H  *  N  H  R  N  L  F  Q  L  L  R :   H  P  F  S  Y  I  F  T  M  A  P  A  A  A  D  T  I  K  P  R   : D  V  C  I  V  G  V  A  R  T  P  M  G  G  F  L  G  S  L  S  S  L  P  A  T  K  L  G  S  I  A  I  E   : G  A  L  K  K  A  N  V  D  P  S  L  V  E  E  V  F  F  G  N  V  L  S  A  N  L  G  Q  A  P  A  R  Q  A  A  L  G  A  G  L  P  N  T  V  V  C  T  T  V  N  K  V  C  A  S  G  L  K   : A  T  M  L  A  A  Q  S  I  Q  L  G  I  N  E  V  V  V  A  G  G  M  E  S  M  S  N  V  P  K  Y  I  A  E  A  R :   K  G  S  R  L  G  H  D  S  L  V  D  G  M  L  K  D  G  L  T  D  V  Y  K  D  C  G  M  G  V  C  A  E  T  C  A  S  N  H  K  I  T  R  E  E  Q  :  D  D  Y  A  V  Q  S  F  E  R  G  I  A  A  Q  E  A  G  A  F  A  W  E  I  V  P  :  V  E  V  P  G  G  R :   E  G  Y  K  T  R  I  K  C  Y  W  K  D  L  R  L  R  G  C  C  S   : G  T  *  I  I  H  N  C  T  C  S  S  N  S  Q  S  Y  Q  K  C  *  L  R  G  F  S  N  *  L  L  *  N  K  *  S  L  C   : C  G  I  S  C  K  S  K  A  A  W  S  *  S   : R  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R   : G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W :   L  V  F  Q  T  I  Y  D  R  Q  C  L  Q  R  I  R  S  S  R  A  S  S  T  R  E  M  T  L  *  L  L  L  L  R  F  L  F  L  L  S  F  V  M  L  I  *  D  A  F  Y  S  S  K  I  N  E  R  F  F  T  K :   D  R  K  K  K  K  E  R  I  S  L  S  F  F  F  F  F  I  Y  T  P  K  K  D  S  Q  K  I  K  K  R  V  I  N  N  F  V  F  R  K  V  F  L  S  V  S  V  *  K  N  S  W  R :   K  K  A  S  L  F  L  S  S  A  N  G  M  S  M  T  H  R  Q  L  K  D  S  Q  *  S  L  I  K  L  E  M  R  R  R  Q  V  A  R  *  T  H  H  Q  R  V  T  L  H  T  K  I  K  Q  R  L  E  N  L  N  Q :   K  N  G  S  A  V  C  S  L  L  L  L  N  H  E  L  L  L  A  S  T  T  *  T  G  K  *  C  *  F  G  T  R  R  D  K  C  T  R  T  L  E  L  *  S  R  C  D  K  *  F  L  L  L  Y  F  G  L  F  T  H  K  M  L  A  F  A  T  K  R  Y  L  *  Y  I  Y  L  F  I  F  F </second_frame>
            <third_frame>   T  L  F  V  L  C  S  I  E  I  I  E  I  S  F  N  F  *   : D  I  H  F  H  T  Y  S  Q  W  L  Q  Q  Q  Q  I  P  S  S  L  E  :  M  F  A  L  L  V  L  P  V  L  Q  W  G  A  S  L  V  L  F  P  R  C  Q  P  Q  N  L  D  Q  *  P  L  R  :  V  L  L  R  K  Q  M  L  I  H  H  *  *  K  K  S  S  L  E  M  S  S  V  Q  T  W  D  R  L  L  L  G  K  L  H  W  V  Q  D  Y  P  I  R  W  F  A  P  L  *  T  K  F  V  H  L  D  *  K  :  Q  L  C  L  Q  L  K  V  F  S  W  A  S  M  R  W  L  W  L  V  E  W  K  A  C  P  M  F  P  N  T  L  Q  K  Q   : G  R  D  L  V  L  D  M  I  V  W  L  M  E  C  L  K  M  V  *  L  M  F  I  R  I  V  V  W  E  F  V  Q  K  H  V  L  L  I  I  K  L  Q  E  R  S  R :   M  I  M  Q  F  K  V  S  N  V  E  L  L  L  R  K  Q  V  L  S  H  G  R  L  Y  R :   L  R  C  L  E  E   : E  K  A  I  K  L  G  L  N  V  I  G  K  I  S  G  Y  A  D  A  A  Q  :  E  P  E  L  F  T  T  A  P  A  L  A  I  P  K  A  I  K  S  A  S  L  E  A  S  Q  I  D  Y  Y  E  I  N  E  A  F  A  :  V  V  S  L  A  N  Q  K  L  L  G  L  N  P  :  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  :  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F   : G  *  C  F  R  L  F  M  I  D  S  A  C  N  G  L  D  L  A  G  R  L  Q  P  E  R  *  L  C  N  F  Y  F  F  V  F  F  F  F  F  P  L  *  C  *  F  K  T  L  F  I  L  Q  K  *  M  K  G  S  S  R   : K  T  E  R  R  K  R  R  E  F  L  F  P  F  F  F  F  L  F  I  H  Q  K  K  I  H  K  K  S  R  K  G  S  *  T  I  L  F  F  E  R  F  F  S  L  F  L  S  K  R  I  H  G   : G  K  R  P  A  S  S  *  V  R  R  M  G  C  Q  *  P  I  V  S  *  R  I  H  S  D  L  *  *  S  S  K  *  E  E  D  R  W  Q  G  R  L  T  T  K  G  *  L  C  I  Q  K  *  S  N  A  W  K  T  S  I   : K  K  M  V  L  L  Y  A  V  Y  C  C  *  I  M  N  F  S  *  L  L  Q  P  E  L  G  N  D  V  S  L  E  P  D  A  T  S  V  L  E  H  W  S  C  S  Q  D  V  T  S  N  F  C  C  C  I  L  D  Y  L  L  I  K  C  W  L  L  L  P  K  D  I  Y  D  I  Y  I  C  L  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86798" stop="86770"/>
                    <exon start="85836" stop="85775"/>
                    <exon start="84742" stop="84644"/>
                    <exon start="84537" stop="84364"/>
                    <exon start="84245" stop="84140"/>
                    <exon start="83536" stop="83398"/>
                    <exon start="82953" stop="82876"/>
                    <exon start="82767" stop="82748"/>
                    <exon start="81725" stop="81661"/>
                    <exon start="81514" stop="81507"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRNLFQLLRHPFSYIFTMAPAAADTIKPRDVCIVGVARTPMGGFLGSLSSLPATKLGSIAIEGALKKANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGLPNTVVCTTVNKVCASGLKATMLAAQSIQLGINEVVVAGGMESMSNVPKYIAEARKGSRLGHDSLVDGMLKDGLTDVYKDCGMGVCAETCASNHKITREEQDDYAVQSFERGIAAQEAGAFAWEIVPVEVPGGREGYKTRIKCYWKDLRLRGCCSGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80203" stop="80189"/>
                    <exon start="77333" stop="77175"/>
                    <exon start="75137" stop="74955"/>
                    <exon start="73726" stop="73682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLHERQKEEKGENFSFLFFFFYLYTKKRFTKNQEKGHKQFCFSKGFSLCFCLKEFMAEKGQPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKTGGKVDSPPKGDSAYKNKATLGKPQSKKWFCCMQSTAAES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81025" stop="80950"/>
                    <exon start="80802" stop="80694"/>
                    <exon start="80371" stop="80284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTRWGCIFGASSWMQWSSYISYTSRGVETEKWQIWSCWCLQWRRRCLRPCPRACVILFFCFWLVFQTIYDRQCLQRIRSSRASSTREMTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="86826" e_stop="86770"/>
            <exon e_start="85836" e_stop="85775"/>
            <exon e_start="84742" e_stop="84644"/>
            <exon e_start="84537" e_stop="84364"/>
            <exon e_start="84245" e_stop="84140"/>
            <exon e_start="83536" e_stop="83398"/>
            <exon e_start="82953" e_stop="82876"/>
            <exon e_start="82767" e_stop="82715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.974"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86826" e_stop="86770" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="86769" i_stop="85837" i_length="933"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85836" e_stop="85775" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84742" e_stop="84644" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84537" e_stop="84364" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84245" e_stop="84140" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.952">
            <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83536" e_stop="83398" e_length="139"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="82953" e_stop="82876" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108"/>
          </intron>
          <exon e_serial="8" e_score="0.943">
            <gDNA_exon_boundary e_start="82767" e_stop="82715" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86826" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86826" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86823" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86821" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86818" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86817" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86817" stop="86770"/>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85817" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
              <exon start="82767" stop="82715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85803" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTTGTTTGTGCTCTGCTCCATTGAAATCATCGAAATCTCTTTCAACTTCTGAG : ACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG : ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG : GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG : CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG : GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG : GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG : GTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGA</gDNA_template>
            <first_frame> S  L  C  L  C  S  A  P  L  K  S  S  K  S  L  S  T  S  E  :  T  S  I  F  I  H  I  H  N  G  S  S  S  S  R  Y  H  Q  A  *  R :   C  L  H  C  W  C  C  P  Y  S  N  G  G  L  P  W  F  S  F  L  V  A  S  H  K  T  W  I  N  S  H  *  G :   C  S  *  E  S  K  C  *  S  I  T  S  R  R  S  L  L  W  K  C  P  Q  C  K  P  G  T  G  S  C  *  A  S  C  I  G  C  R  T  T  Q  Y  G  G  L  H  H  C  E  Q  S  L  C  I  W  I  E  S :   N  Y  A  C  S  S  K  Y  S  V  G  H  Q  *  G  G  C  G  W  W  N  G  K  H  V  Q  C  S  Q  I  H  C  R  S  K  :  E  G  I  S  S  W  T  *  *  S  G  *  W  N  A  *  R  W  F  D  *  C  L  *  G  L  W  Y  G  S  L  C  R  N  M  C  F  *  S  *  N  Y  K  R  G  A   : G  *  L  C  S  S  K  F  R  T  W  N  C  C  S  G  S  R  C  F  R  M  G  D  C  T   : G  *  G  A  W  R  K  R  K  A  I  H  Y  C  *  Q  G  * </first_frame>
            <second_frame>  H  F  V  C  A  L  L  H  *  N  H  R  N  L  F  Q  L  L  R :   H  P  F  S  Y  I  F  T  M  A  P  A  A  A  D  T  I  K  P  R   : D  V  C  I  V  G  V  A  R  T  P  M  G  G  F  L  G  S  L  S  S  L  P  A  T  K  L  G  S  I  A  I  E   : G  A  L  K  K  A  N  V  D  P  S  L  V  E  E  V  F  F  G  N  V  L  S  A  N  L  G  Q  A  P  A  R  Q  A  A  L  G  A  G  L  P  N  T  V  V  C  T  T  V  N  K  V  C  A  S  G  L  K   : A  T  M  L  A  A  Q  S  I  Q  L  G  I  N  E  V  V  V  A  G  G  M  E  S  M  S  N  V  P  K  Y  I  A  E  A  R :   K  G  S  R  L  G  H  D  S  L  V  D  G  M  L  K  D  G  L  T  D  V  Y  K  D  C  G  M  G  V  C  A  E  T  C  A  S  N  H  K  I  T  R  E  E  Q  :  D  D  Y  A  V  Q  S  F  E  R  G  I  A  A  Q  E  A  G  A  F  A  W  E  I  V  P  :  V  E  V  P  G  G  R  G  K  P  S  I  I  V  D  K  D   </second_frame>
            <third_frame>   T  L  F  V  L  C  S  I  E  I  I  E  I  S  F  N  F  *   : D  I  H  F  H  T  Y  S  Q  W  L  Q  Q  Q  Q  I  P  S  S  L  E  :  M  F  A  L  L  V  L  P  V  L  Q  W  G  A  S  L  V  L  F  P  R  C  Q  P  Q  N  L  D  Q  *  P  L  R  :  V  L  L  R  K  Q  M  L  I  H  H  *  *  K  K  S  S  L  E  M  S  S  V  Q  T  W  D  R  L  L  L  G  K  L  H  W  V  Q  D  Y  P  I  R  W  F  A  P  L  *  T  K  F  V  H  L  D  *  K  :  Q  L  C  L  Q  L  K  V  F  S  W  A  S  M  R  W  L  W  L  V  E  W  K  A  C  P  M  F  P  N  T  L  Q  K  Q   : G  R  D  L  V  L  D  M  I  V  W  L  M  E  C  L  K  M  V  *  L  M  F  I  R  I  V  V  W  E  F  V  Q  K  H  V  L  L  I  I  K  L  Q  E  R  S  R :   M  I  M  Q  F  K  V  S  N  V  E  L  L  L  R  K  Q  V  L  S  H  G  R  L  Y  R :   L  R  C  L  E  E  E  E  S  H  P  L  L  L  T  R  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86798" stop="86770"/>
                    <exon start="85836" stop="85775"/>
                    <exon start="84742" stop="84644"/>
                    <exon start="84537" stop="84364"/>
                    <exon start="84245" stop="84140"/>
                    <exon start="83536" stop="83398"/>
                    <exon start="82953" stop="82876"/>
                    <exon start="82767" stop="82717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRNLFQLLRHPFSYIFTMAPAAADTIKPRDVCIVGVARTPMGGFLGSLSSLPATKLGSIAIEGALKKANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGLPNTVVCTTVNKVCASGLKATMLAAQSIQLGINEVVVAGGMESMSNVPKYIAEARKGSRLGHDSLVDGMLKDGLTDVYKDCGMGVCAETCASNHKITREEQDDYAVQSFERGIAAQEAGAFAWEIVPVEVPGGRGKPSIIVDKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="85874" e_stop="85775"/>
            <exon e_start="84742" e_stop="84644"/>
            <exon e_start="84537" e_stop="84364"/>
            <exon e_start="84245" e_stop="84140"/>
            <exon e_start="83536" e_stop="83398"/>
            <exon e_start="82953" e_stop="82876"/>
            <exon e_start="82767" e_stop="82748"/>
            <exon e_start="81725" e_stop="81661"/>
            <exon e_start="81514" e_stop="81404"/>
            <exon e_start="81324" e_stop="81283"/>
            <exon e_start="81036" e_stop="80950"/>
            <exon e_start="80802" e_stop="80694"/>
            <exon e_start="80371" e_stop="80189"/>
            <exon e_start="77333" e_stop="77175"/>
            <exon e_start="75137" e_stop="74955"/>
            <exon e_start="73726" e_stop="73483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.952" e_score="0.981"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.844" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.966"/>
          <exon-intron don_prob="0.956" acc_prob="0.582" e_score="0.989"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85874" e_stop="85775" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84742" e_stop="84644" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84537" e_stop="84364" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="84245" e_stop="84140" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.952">
            <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="83536" e_stop="83398" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="82953" e_stop="82876" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82767" e_stop="82748" e_length="20"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82747" i_stop="81726" i_length="1022"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81725" e_stop="81661" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81514" e_stop="81404" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="81324" e_stop="81283" e_length="42"/>
          </exon>
          <intron i_serial="10" don_prob="0.967" acc_prob="0.984">
            <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80950" e_length="87"/>
          </exon>
          <intron i_serial="11" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="80802" e_stop="80694" e_length="109"/>
          </exon>
          <intron i_serial="12" don_prob="0.534" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="80371" e_stop="80189" e_length="183"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.844">
            <gDNA_intron_boundary i_start="80188" i_stop="77334" i_length="2855"/>
          </intron>
          <exon e_serial="14" e_score="0.966">
            <gDNA_exon_boundary e_start="77333" e_stop="77175" e_length="159"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="77174" i_stop="75138" i_length="2037"/>
          </intron>
          <exon e_serial="15" e_score="0.989">
            <gDNA_exon_boundary e_start="75137" e_stop="74955" e_length="183"/>
          </exon>
          <intron i_serial="15" don_prob="0.956" acc_prob="0.582">
            <gDNA_intron_boundary i_start="74954" i_stop="73727" i_length="1228"/>
          </intron>
          <exon e_serial="16" e_score="0.984">
            <gDNA_exon_boundary e_start="73726" e_stop="73483" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85874" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85859" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85803" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82952" stop="82876"/>
              <exon start="82767" stop="82748"/>
              <exon start="81725" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
              <exon start="77333" stop="77303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328441" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77319" stop="77175"/>
              <exon start="75137" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547391" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77319" stop="77175"/>
              <exon start="75137" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75048" stop="74955"/>
              <exon start="73726" stop="73483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG : ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG : GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG : CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG : GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG : GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG : GTTGAGGTGCCTGGAGGAAG : AGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG : GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT : GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA : GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG : GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG : GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA : AGACAGAAAGAAGAAAAAGGAGAGAATTTCTCTTTCCTTTTTTTTTTTTTTTATTTATACACCAAAAAAAGATTCACAAAAAATCAAGAAAAGGGTCATAAACAATTTTGTTTTTCGAAAGGTTTTTCTCTCTGTTTCTGTCTAAAAGAATTCATGGCG : GAAAAAGGCCAGCCTCTTCCTAAGTTCGGCGAATGGGATGTCAATGACCCATCGTCAGCTGAAGGATTCACAGTGATCTTTAATAAAGCTCGAAATGAGAAGAAGACAGGTGGCAAGGTAGACTCACCACCAAAGGGTGACTCTGCATACAAAAATAAAGCAACGCTTGGAAAACCTCAATCA : AAAAAATGGTTCTGCTGTATGCAGTCTACTGCTGCTGAATCATGAACTTCTCTTAGCTTCTACAACCTGAACTGGGAAATGATGTTAGTTTGGAACCAGACGCGACAAGTGTACTAGAACACTGGAGCTGTAGTCAAGATGTGACAAGTAATTTTTGCTGTTGTATTTTGGATTATTTACTCATAAAATGCTGGCTTTTGCTACCAAAAGATATTTATGATATATATATTTGTTTATTTTTTTT</gDNA_template>
            <first_frame> L  I  E  R  D  L  I  S  F  G  *  N  R  H  P  F  S  Y  I  F  T  M  A  P  A  A  A  D  T  I  K  P  R   : D  V  C  I  V  G  V  A  R  T  P  M  G  G  F  L  G  S  L  S  S  L  P  A  T  K  L  G  S  I  A  I  E   : G  A  L  K  K  A  N  V  D  P  S  L  V  E  E  V  F  F  G  N  V  L  S  A  N  L  G  Q  A  P  A  R  Q  A  A  L  G  A  G  L  P  N  T  V  V  C  T  T  V  N  K  V  C  A  S  G  L  K   : A  T  M  L  A  A  Q  S  I  Q  L  G  I  N  E  V  V  V  A  G  G  M  E  S  M  S  N  V  P  K  Y  I  A  E  A  R :   K  G  S  R  L  G  H  D  S  L  V  D  G  M  L  K  D  G  L  T  D  V  Y  K  D  C  G  M  G  V  C  A  E  T  C  A  S  N  H  K  I  T  R  E  E  Q  :  D  D  Y  A  V  Q  S  F  E  R  G  I  A  A  Q  E  A  G  A  F  A  W  E  I  V  P  :  V  E  V  P  G  G  R :   E  G  Y  K  T  R  I  K  C  Y  W  K  D  L  R  L  R  G  C  C  S   : G  T  *  I  I  H  N  C  T  C  S  S  N  S  Q  S  Y  Q  K  C  *  L  R  G  F  S  N  *  L  L  *  N  K  *  S  L  C   : C  G  I  S  C  K  S  K  A  A  W  S  *  S   : R  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R   : G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W :   L  V  F  Q  T  I  Y  D  R  Q  C  L  Q  R  I  R  S  S  R  A  S  S  T  R  E  M  T  L  *  L  L  L  L  R  F  L  F  L  L  S  F  V  M  L  I  *  D  A  F  Y  S  S  K  I  N  E  R  F  F  T  K :   D  R  K  K  K  K  E  R  I  S  L  S  F  F  F  F  F  I  Y  T  P  K  K  D  S  Q  K  I  K  K  R  V  I  N  N  F  V  F  R  K  V  F  L  S  V  S  V  *  K  N  S  W  R :   K  K  A  S  L  F  L  S  S  A  N  G  M  S  M  T  H  R  Q  L  K  D  S  Q  *  S  L  I  K  L  E  M  R  R  R  Q  V  A  R  *  T  H  H  Q  R  V  T  L  H  T  K  I  K  Q  R  L  E  N  L  N  Q :   K  N  G  S  A  V  C  S  L  L  L  L  N  H  E  L  L  L  A  S  T  T  *  T  G  K  *  C  *  F  G  T  R  R  D  K  C  T  R  T  L  E  L  *  S  R  C  D  K  *  F  L  L  L  Y  F  G  L  F  T  H  K  M  L  A  F  A  T  K  R  Y  L  *  Y  I  Y  L  F  I  F  F </first_frame>
            <second_frame>  *  *  K  E  T  *  L  V  L  G  E  T  D  I  H  F  H  T  Y  S  Q  W  L  Q  Q  Q  Q  I  P  S  S  L  E  :  M  F  A  L  L  V  L  P  V  L  Q  W  G  A  S  L  V  L  F  P  R  C  Q  P  Q  N  L  D  Q  *  P  L  R  :  V  L  L  R  K  Q  M  L  I  H  H  *  *  K  K  S  S  L  E  M  S  S  V  Q  T  W  D  R  L  L  L  G  K  L  H  W  V  Q  D  Y  P  I  R  W  F  A  P  L  *  T  K  F  V  H  L  D  *  K  :  Q  L  C  L  Q  L  K  V  F  S  W  A  S  M  R  W  L  W  L  V  E  W  K  A  C  P  M  F  P  N  T  L  Q  K  Q   : G  R  D  L  V  L  D  M  I  V  W  L  M  E  C  L  K  M  V  *  L  M  F  I  R  I  V  V  W  E  F  V  Q  K  H  V  L  L  I  I  K  L  Q  E  R  S  R :   M  I  M  Q  F  K  V  S  N  V  E  L  L  L  R  K  Q  V  L  S  H  G  R  L  Y  R :   L  R  C  L  E  E   : E  K  A  I  K  L  G  L  N  V  I  G  K  I  S  G  Y  A  D  A  A  Q  :  E  P  E  L  F  T  T  A  P  A  L  A  I  P  K  A  I  K  S  A  S  L  E  A  S  Q  I  D  Y  Y  E  I  N  E  A  F  A  :  V  V  S  L  A  N  Q  K  L  L  G  L  N  P  :  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  :  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F   : G  *  C  F  R  L  F  M  I  D  S  A  C  N  G  L  D  L  A  G  R  L  Q  P  E  R  *  L  C  N  F  Y  F  F  V  F  F  F  F  F  P  L  *  C  *  F  K  T  L  F  I  L  Q  K  *  M  K  G  S  S  R   : K  T  E  R  R  K  R  R  E  F  L  F  P  F  F  F  F  L  F  I  H  Q  K  K  I  H  K  K  S  R  K  G  S  *  T  I  L  F  F  E  R  F  F  S  L  F  L  S  K  R  I  H  G   : G  K  R  P  A  S  S  *  V  R  R  M  G  C  Q  *  P  I  V  S  *  R  I  H  S  D  L  *  *  S  S  K  *  E  E  D  R  W  Q  G  R  L  T  T  K  G  *  L  C  I  Q  K  *  S  N  A  W  K  T  S  I   : K  K  M  V  L  L  Y  A  V  Y  C  C  *  I  M  N  F  S  *  L  L  Q  P  E  L  G  N  D  V  S  L  E  P  D  A  T  S  V  L  E  H  W  S  C  S  Q  D  V  T  S  N  F  C  C  C  I  L  D  Y  L  L  I  K  C  W  L  L  L  P  K  D  I  Y  D  I  Y  I  C  L  F  F   </second_frame>
            <third_frame>   D  R  K  R  P  D  *  F  W  V  K  Q  T  S  I  F  I  H  I  H  N  G  S  S  S  S  R  Y  H  Q  A  *  R :   C  L  H  C  W  C  C  P  Y  S  N  G  G  L  P  W  F  S  F  L  V  A  S  H  K  T  W  I  N  S  H  *  G :   C  S  *  E  S  K  C  *  S  I  T  S  R  R  S  L  L  W  K  C  P  Q  C  K  P  G  T  G  S  C  *  A  S  C  I  G  C  R  T  T  Q  Y  G  G  L  H  H  C  E  Q  S  L  C  I  W  I  E  S :   N  Y  A  C  S  S  K  Y  S  V  G  H  Q  *  G  G  C  G  W  W  N  G  K  H  V  Q  C  S  Q  I  H  C  R  S  K  :  E  G  I  S  S  W  T  *  *  S  G  *  W  N  A  *  R  W  F  D  *  C  L  *  G  L  W  Y  G  S  L  C  R  N  M  C  F  *  S  *  N  Y  K  R  G  A   : G  *  L  C  S  S  K  F  R  T  W  N  C  C  S  G  S  R  C  F  R  M  G  D  C  T   : G  *  G  A  W  R  K  :  R  R  L  *  N  *  D  *  M  L  L  E  R  S  Q  A  T  R  M  L  L  R :   N  L  N  Y  S  Q  L  H  L  L  *  Q  F  P  K  L  S  K  V  L  A  *  R  L  L  K  L  I  T  M  K  *  M  K  P  L  L :   W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q :   K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G :   C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  :  V  S  V  S  D  Y  L  *  *  T  V  L  A  T  D  *  I  *  Q  G  V  F  N  Q  R  D  D  S  V  T  S  T  S  S  F  S  F  S  S  F  L  C  N  V  N  L  R  R  F  L  F  F  K  N  K  *  K  V  L  H  E  :  R  Q  K  E  E  K  G  E  N  F  S  F  L  F  F  F  F  Y  L  Y  T  K  K  R  F  T  K  N  Q  E  K  G  H  K  Q  F  C  F  S  K  G  F  S  L  C  F  C  L  K  E  F  M  A  :  E  K  G  Q  P  L  P  K  F  G  E  W  D  V  N  D  P  S  S  A  E  G  F  T  V  I  F  N  K  A  R  N  E  K  K  T  G  G  K  V  D  S  P  P  K  G  D  S  A  Y  K  N  K  A  T  L  G  K  P  Q  S  :  K  K  W  F  C  C  M  Q  S  T  A  A  E  S  *  T  S  L  S  F  Y  N  L  N  W  E  M  M  L  V  W  N  Q  T  R  Q  V  Y  *  N  T  G  A  V  V  K  M  *  Q  V  I  F  A  V  V  F  W  I  I  Y  S  *  N  A  G  F  C  Y  Q  K  I  F  M  I  Y  I  F  V  Y  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85841" stop="85775"/>
                    <exon start="84742" stop="84644"/>
                    <exon start="84537" stop="84364"/>
                    <exon start="84245" stop="84140"/>
                    <exon start="83536" stop="83398"/>
                    <exon start="82953" stop="82876"/>
                    <exon start="82767" stop="82748"/>
                    <exon start="81725" stop="81661"/>
                    <exon start="81514" stop="81507"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRHPFSYIFTMAPAAADTIKPRDVCIVGVARTPMGGFLGSLSSLPATKLGSIAIEGALKKANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGLPNTVVCTTVNKVCASGLKATMLAAQSIQLGINEVVVAGGMESMSNVPKYIAEARKGSRLGHDSLVDGMLKDGLTDVYKDCGMGVCAETCASNHKITREEQDDYAVQSFERGIAAQEAGAFAWEIVPVEVPGGREGYKTRIKCYWKDLRLRGCCSGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80203" stop="80189"/>
                    <exon start="77333" stop="77175"/>
                    <exon start="75137" stop="74955"/>
                    <exon start="73726" stop="73682"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLHERQKEEKGENFSFLFFFFYLYTKKRFTKNQEKGHKQFCFSKGFSLCFCLKEFMAEKGQPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKTGGKVDSPPKGDSAYKNKATLGKPQSKKWFCCMQSTAAES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81025" stop="80950"/>
                    <exon start="80802" stop="80694"/>
                    <exon start="80371" stop="80284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTRWGCIFGASSWMQWSSYISYTSRGVETEKWQIWSCWCLQWRRRCLRPCPRACVILFFCFWLVFQTIYDRQCLQRIRSSRASSTREMTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="85874" e_stop="85775"/>
            <exon e_start="84742" e_stop="84644"/>
            <exon e_start="84537" e_stop="84364"/>
            <exon e_start="84245" e_stop="84140"/>
            <exon e_start="83536" e_stop="83398"/>
            <exon e_start="82953" e_stop="82876"/>
            <exon e_start="82767" e_stop="82702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85874" e_stop="85775" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85774" i_stop="84743" i_length="1032"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84742" e_stop="84644" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="84643" i_stop="84538" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84537" e_stop="84364" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84363" i_stop="84246" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84245" e_stop="84140" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.952">
            <gDNA_intron_boundary i_start="84139" i_stop="83537" i_length="603"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83536" e_stop="83398" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83397" i_stop="82954" i_length="444"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="82953" e_stop="82876" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82875" i_stop="82768" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82767" e_stop="82702" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85874" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85863" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
              <exon start="82767" stop="82702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85859" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85836" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85817" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
              <exon start="82767" stop="82715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85803" stop="85775"/>
              <exon start="84742" stop="84644"/>
              <exon start="84537" stop="84364"/>
              <exon start="84245" stop="84140"/>
              <exon start="83536" stop="83398"/>
              <exon start="82953" stop="82876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560885" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATAGAAAGAGACCTGATTAGTTTTGGGTGAAACAGACATCCATTTTCATACATATTCACAATGGCTCCAGCAGCAGCAGATACCATCAAGCCTAGAG : ATGTTTGCATTGTTGGTGTTGCCCGTACTCCAATGGGGGGCTTCCTTGGTTCTCTTTCCTCGTTGCCAGCCACAAAACTTGGATCAATAGCCATTGAGG : GTGCTCTTAAGAAAGCAAATGTTGATCCATCACTAGTAGAAGAAGTCTTCTTTGGAAATGTCCTCAGTGCAAACCTGGGACAGGCTCCTGCTAGGCAAGCTGCATTGGGTGCAGGACTACCCAATACGGTGGTTTGCACCACTGTGAACAAAGTTTGTGCATCTGGATTGAAAG : CAACTATGCTTGCAGCTCAAAGTATTCAGTTGGGCATCAATGAGGTGGTTGTGGCTGGTGGAATGGAAAGCATGTCCAATGTTCCCAAATACATTGCAGAAGCAAG : GAAGGGATCTCGTCTTGGACATGATAGTCTGGTTGATGGAATGCTTAAAGATGGTTTGACTGATGTTTATAAGGATTGTGGTATGGGAGTTTGTGCAGAAACATGTGCTTCTAATCATAAAATTACAAGAGAGGAGCAG : GATGATTATGCAGTTCAAAGTTTCGAACGTGGAATTGCTGCTCAGGAAGCAGGTGCTTTCGCATGGGAGATTGTACCG : GTTGAGGTGCCTGGAGGAAGAGGAAAGCCATCCATTATTGTTGACAAGGATGACGGTCTAGGAAAG</gDNA_template>
            <first_frame> L  I  E  R  D  L  I  S  F  G  *  N  R  H  P  F  S  Y  I  F  T  M  A  P  A  A  A  D  T  I  K  P  R   : D  V  C  I  V  G  V  A  R  T  P  M  G  G  F  L  G  S  L  S  S  L  P  A  T  K  L  G  S  I  A  I  E   : G  A  L  K  K  A  N  V  D  P  S  L  V  E  E  V  F  F  G  N  V  L  S  A  N  L  G  Q  A  P  A  R  Q  A  A  L  G  A  G  L  P  N  T  V  V  C  T  T  V  N  K  V  C  A  S  G  L  K   : A  T  M  L  A  A  Q  S  I  Q  L  G  I  N  E  V  V  V  A  G  G  M  E  S  M  S  N  V  P  K  Y  I  A  E  A  R :   K  G  S  R  L  G  H  D  S  L  V  D  G  M  L  K  D  G  L  T  D  V  Y  K  D  C  G  M  G  V  C  A  E  T  C  A  S  N  H  K  I  T  R  E  E  Q  :  D  D  Y  A  V  Q  S  F  E  R  G  I  A  A  Q  E  A  G  A  F  A  W  E  I  V  P  :  V  E  V  P  G  G  R  G  K  P  S  I  I  V  D  K  D  D  G  L  G  K </first_frame>
            <second_frame>  *  *  K  E  T  *  L  V  L  G  E  T  D  I  H  F  H  T  Y  S  Q  W  L  Q  Q  Q  Q  I  P  S  S  L  E  :  M  F  A  L  L  V  L  P  V  L  Q  W  G  A  S  L  V  L  F  P  R  C  Q  P  Q  N  L  D  Q  *  P  L  R  :  V  L  L  R  K  Q  M  L  I  H  H  *  *  K  K  S  S  L  E  M  S  S  V  Q  T  W  D  R  L  L  L  G  K  L  H  W  V  Q  D  Y  P  I  R  W  F  A  P  L  *  T  K  F  V  H  L  D  *  K  :  Q  L  C  L  Q  L  K  V  F  S  W  A  S  M  R  W  L  W  L  V  E  W  K  A  C  P  M  F  P  N  T  L  Q  K  Q   : G  R  D  L  V  L  D  M  I  V  W  L  M  E  C  L  K  M  V  *  L  M  F  I  R  I  V  V  W  E  F  V  Q  K  H  V  L  L  I  I  K  L  Q  E  R  S  R :   M  I  M  Q  F  K  V  S  N  V  E  L  L  L  R  K  Q  V  L  S  H  G  R  L  Y  R :   L  R  C  L  E  E  E  E  S  H  P  L  L  L  T  R  M  T  V  *  E   </second_frame>
            <third_frame>   D  R  K  R  P  D  *  F  W  V  K  Q  T  S  I  F  I  H  I  H  N  G  S  S  S  S  R  Y  H  Q  A  *  R :   C  L  H  C  W  C  C  P  Y  S  N  G  G  L  P  W  F  S  F  L  V  A  S  H  K  T  W  I  N  S  H  *  G :   C  S  *  E  S  K  C  *  S  I  T  S  R  R  S  L  L  W  K  C  P  Q  C  K  P  G  T  G  S  C  *  A  S  C  I  G  C  R  T  T  Q  Y  G  G  L  H  H  C  E  Q  S  L  C  I  W  I  E  S :   N  Y  A  C  S  S  K  Y  S  V  G  H  Q  *  G  G  C  G  W  W  N  G  K  H  V  Q  C  S  Q  I  H  C  R  S  K  :  E  G  I  S  S  W  T  *  *  S  G  *  W  N  A  *  R  W  F  D  *  C  L  *  G  L  W  Y  G  S  L  C  R  N  M  C  F  *  S  *  N  Y  K  R  G  A   : G  *  L  C  S  S  K  F  R  T  W  N  C  C  S  G  S  R  C  F  R  M  G  D  C  T   : G  *  G  A  W  R  K  R  K  A  I  H  Y  C  *  Q  G  *  R  S  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85841" stop="85775"/>
                    <exon start="84742" stop="84644"/>
                    <exon start="84537" stop="84364"/>
                    <exon start="84245" stop="84140"/>
                    <exon start="83536" stop="83398"/>
                    <exon start="82953" stop="82876"/>
                    <exon start="82767" stop="82702"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRHPFSYIFTMAPAAADTIKPRDVCIVGVARTPMGGFLGSLSSLPATKLGSIAIEGALKKANVDPSLVEEVFFGNVLSANLGQAPARQAALGAGLPNTVVCTTVNKVCASGLKATMLAAQSIQLGINEVVVAGGMESMSNVPKYIAEARKGSRLGHDSLVDGMLKDGLTDVYKDCGMGVCAETCASNHKITREEQDDYAVQSFERGIAAQEAGAFAWEIVPVEVPGGRGKPSIIVDKDDGLGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="81323" e_stop="80588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="81323" e_stop="80588" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81323" stop="80588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81319" stop="80815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCAGTGAGTGCTGCATCTATCCTATATGCTTATTAAATCTTGAGATACAAAATTTGTTAATCTCTTTAACTTCGACACTCTCAGTCGGGATGTATTATCTAAGAAAACTGTTTTTGGATTATATGCTTTTATACGAAAATGGAACAAGGATAAGATCACATTAAGTCTTAACTTTTACTTGGTCTGGTGGTATTTTATATAGTGTGGAACAAGCACAGAATGATAGTAACCTTTTGTTTGTTCACTCAGGAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGGGTACGTGTCACTACTGCAACATTTTGGTGTTTTAAGTTCAAATGATTGTTTCTTTTAATGTCCTCTTTTCTTCTGACATGAATATTGAGAAATCTATTGTCCGTTGACGGTTGCTTCAAATCTATTTTCTCAATACAATGTTTGCAGGTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTGGTAAGTCCGAAGATTGGAAACTCATTGAGAATTTTGTCTACCAATGTGATATTGCCTGTATAGAATTCAGAGATGCTCTTGATAGATCATTTAACTGGACAACAAT</gDNA_template>
            <first_frame> W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q  *  V  L  H  L  S  Y  M  L  I  K  S  *  D  T  K  F  V  N  L  F  N  F  D  T  L  S  R  D  V  L  S  K  K  T  V  F  G  L  Y  A  F  I  R  K  W  N  K  D  K  I  T  L  S  L  N  F  Y  L  V  W  W  Y  F  I  *  C  G  T  S  T  E  *  *  *  P  F  V  C  S  L  R  K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G  Y  V  S  L  L  Q  H  F  G  V  L  S  S  N  D  C  F  F  *  C  P  L  F  F  *  H  E  Y  *  E  I  Y  C  P  L  T  V  A  S  N  L  F  S  Q  Y  N  V  C  R  C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  V  S  P  K  I  G  N  S  L  R  I  L  S  T  N  V  I  L  P  V  *  N  S  E  M  L  L  I  D  H  L  T  G  Q  Q  </first_frame>
            <second_frame>  G  I  S  C  K  S  K  A  A  W  S  *  S  S  E  C  C  I  Y  P  I  C  L  L  N  L  E  I  Q  N  L  L  I  S  L  T  S  T  L  S  V  G  M  Y  Y  L  R  K  L  F  L  D  Y  M  L  L  Y  E  N  G  T  R  I  R  S  H  *  V  L  T  F  T  W  S  G  G  I  L  Y  S  V  E  Q  A  Q  N  D  S  N  L  L  F  V  H  S  G  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R  G  T  C  H  Y  C  N  I  L  V  F  *  V  Q  M  I  V  S  F  N  V  L  F  S  S  D  M  N  I  E  K  S  I  V  R  *  R  L  L  Q  I  Y  F  L  N  T  M  F  A  G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W  *  V  R  R  L  E  T  H  *  E  F  C  L  P  M  *  Y  C  L  Y  R  I  Q  R  C  S  *  *  I  I  *  L  D  N  N </second_frame>
            <third_frame>   V  S  L  A  N  Q  K  L  L  G  L  N  P  V  S  A  A  S  I  L  Y  A  Y  *  I  L  R  Y  K  I  C  *  S  L  *  L  R  H  S  Q  S  G  C  I  I  *  E  N  C  F  W  I  I  C  F  Y  T  K  M  E  Q  G  *  D  H  I  K  S  *  L  L  L  G  L  V  V  F  Y  I  V  W  N  K  H  R  M  I  V  T  F  C  L  F  T  Q  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  V  R  V  T  T  A  T  F  W  C  F  K  F  K  *  L  F  L  L  M  S  S  F  L  L  T  *  I  L  R  N  L  L  S  V  D  G  C  F  K  S  I  F  S  I  Q  C  L  Q  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F  G  K  S  E  D  W  K  L  I  E  N  F  V  Y  Q  C  D  I  A  C  I  E  F  R  D  A  L  D  R  S  F  N  W  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81114" stop="80905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLGLVVFYIVWNKHRMIVTFCLFTQEKVNVHGGAVSLGHPLGCSGARILVTLLGVRVTTATFWCFKFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="82287" e_stop="82226"/>
            <exon e_start="81760" e_stop="81661"/>
            <exon e_start="81514" e_stop="81404"/>
            <exon e_start="81324" e_stop="81283"/>
            <exon e_start="81036" e_stop="80950"/>
            <exon e_start="80802" e_stop="80694"/>
            <exon e_start="80371" e_stop="80189"/>
            <exon e_start="77505" e_stop="77473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.788"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82287" e_stop="82226" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82225" i_stop="81761" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81760" e_stop="81661" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81514" e_stop="81404" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81324" e_stop="81283" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.984">
            <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80950" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80802" e_stop="80694" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.534" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80371" e_stop="80189" e_length="183"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="80188" i_stop="77506" i_length="2683"/>
          </intron>
          <exon e_serial="8" e_score="0.788">
            <gDNA_exon_boundary e_start="77505" e_stop="77473" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82287" stop="82226"/>
              <exon start="81760" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81722" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
              <exon start="77505" stop="77473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371350" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCGACCAAGTTTTAAGGATAAAGATGGTACTGTTACTGCTGGTAACGCTTCTAGCATAAG : TGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG : GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT : GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA : GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG : GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG : GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA : AGAAAACTAAAAAAAAAAAAAAAAAACATAACC</gDNA_template>
            <first_frame> L  R  P  S  F  K  D  K  D  G  T  V  T  A  G  N  A  S  S  I  S :   D  G  A  A  A  L  V  L  V  S  G  E  K  A  I  K  L  G  L  N  V  I  G  K  I  S  G  Y  A  D  A  A  Q  :  E  P  E  L  F  T  T  A  P  A  L  A  I  P  K  A  I  K  S  A  S  L  E  A  S  Q  I  D  Y  Y  E  I  N  E  A  F  A  :  V  V  S  L  A  N  Q  K  L  L  G  L  N  P  :  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  :  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F   : G  *  C  F  R  L  F  M  I  D  S  A  C  N  G  L  D  L  A  G  R  L  Q  P  E  R  *  L  C  N  F  Y  F  F  V  F  F  F  F  F  P  L  *  C  *  F  K  T  L  F  I  L  Q  K  *  M  K  G  S  S  R   : K  K  T  K  K  K  K  K  K  H  N  </first_frame>
            <second_frame>  S  D  Q  V  L  R  I  K  M  V  L  L  L  L  V  T  L  L  A  *   : V  M  V  L  L  H  W  S  *  *  V  E  R  R  L  *  N  *  D  *  M  L  L  E  R  S  Q  A  T  R  M  L  L  R :   N  L  N  Y  S  Q  L  H  L  L  *  Q  F  P  K  L  S  K  V  L  A  *  R  L  L  K  L  I  T  M  K  *  M  K  P  L  L :   W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q :   K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G :   C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  :  V  S  V  S  D  Y  L  *  *  T  V  L  A  T  D  *  I  *  Q  G  V  F  N  Q  R  D  D  S  V  T  S  T  S  S  F  S  F  S  S  F  L  C  N  V  N  L  R  R  F  L  F  F  K  N  K  *  K  V  L  H  E  :  R  K  L  K  K  K  K  K  N  I  T </second_frame>
            <third_frame>   P  T  K  F  *  G  *  R  W  Y  C  Y  C  W  *  R  F  *  H  K  :  *  W  C  C  C  I  G  L  S  K  W  R  E  G  Y  K  T  R  I  K  C  Y  W  K  D  L  R  L  R  G  C  C  S   : G  T  *  I  I  H  N  C  T  C  S  S  N  S  Q  S  Y  Q  K  C  *  L  R  G  F  S  N  *  L  L  *  N  K  *  S  L  C   : C  G  I  S  C  K  S  K  A  A  W  S  *  S   : R  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R   : G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W :   L  V  F  Q  T  I  Y  D  R  Q  C  L  Q  R  I  R  S  S  R  A  S  S  T  R  E  M  T  L  *  L  L  L  L  R  F  L  F  L  L  S  F  V  M  L  I  *  D  A  F  Y  S  S  K  I  N  E  R  F  F  T  K :   E  N  *  K  K  K  K  K  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82287" stop="82226"/>
                    <exon start="81760" stop="81661"/>
                    <exon start="81514" stop="81404"/>
                    <exon start="81324" stop="81283"/>
                    <exon start="81036" stop="80950"/>
                    <exon start="80802" stop="80713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPSFKDKDGTVTAGNASSISDGAAALVLVSGEKAIKLGLNVIGKISGYADAAQEPELFTTAPALAIPKAIKSASLEASQIDYYEINEAFAVVSLANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVLRQKNGKYGAAGVCNGGGGASALVLELV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="82287" e_stop="82226"/>
            <exon e_start="81760" e_stop="81661"/>
            <exon e_start="81514" e_stop="81404"/>
            <exon e_start="81324" e_stop="81283"/>
            <exon e_start="81036" e_stop="80950"/>
            <exon e_start="80802" e_stop="80694"/>
            <exon e_start="80371" e_stop="80181"/>
            <exon e_start="77505" e_stop="77481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="0.880"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82287" e_stop="82226" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="82225" i_stop="81761" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81760" e_stop="81661" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81660" i_stop="81515" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81514" e_stop="81404" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81324" e_stop="81283" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.967" acc_prob="0.984">
            <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80950" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80802" e_stop="80694" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.534" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80371" e_stop="80181" e_length="191"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="80180" i_stop="77506" i_length="2675"/>
          </intron>
          <exon e_serial="8" e_score="0.880">
            <gDNA_exon_boundary e_start="77505" e_stop="77481" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82287" stop="82226"/>
              <exon start="81760" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81760" stop="81661"/>
              <exon start="81514" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80181"/>
              <exon start="77505" stop="77481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402224" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCGACCAAGTTTTAAGGATAAAGATGGTACTGTTACTGCTGGTAACGCTTCTAGCATAAG : TGATGGTGCTGCTGCATTGGTCTTAGTAAGTGGAGAGAAGGCTATAAAACTAGGATTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAG : GAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT : GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA : GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG : GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG : GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAAGTAAATGA : AGAAAACTAAAAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> L  R  P  S  F  K  D  K  D  G  T  V  T  A  G  N  A  S  S  I  S :   D  G  A  A  A  L  V  L  V  S  G  E  K  A  I  K  L  G  L  N  V  I  G  K  I  S  G  Y  A  D  A  A  Q  :  E  P  E  L  F  T  T  A  P  A  L  A  I  P  K  A  I  K  S  A  S  L  E  A  S  Q  I  D  Y  Y  E  I  N  E  A  F  A  :  V  V  S  L  A  N  Q  K  L  L  G  L  N  P  :  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  :  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F   : G  *  C  F  R  L  F  M  I  D  S  A  C  N  G  L  D  L  A  G  R  L  Q  P  E  R  *  L  C  N  F  Y  F  F  V  F  F  F  F  F  P  L  *  C  *  F  K  T  L  F  I  L  Q  K  *  M  K  G  S  S  R  S  K  *  :  R  K  L  K  K  K  K  K  </first_frame>
            <second_frame>  S  D  Q  V  L  R  I  K  M  V  L  L  L  L  V  T  L  L  A  *   : V  M  V  L  L  H  W  S  *  *  V  E  R  R  L  *  N  *  D  *  M  L  L  E  R  S  Q  A  T  R  M  L  L  R :   N  L  N  Y  S  Q  L  H  L  L  *  Q  F  P  K  L  S  K  V  L  A  *  R  L  L  K  L  I  T  M  K  *  M  K  P  L  L :   W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q :   K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G :   C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  :  V  S  V  S  D  Y  L  *  *  T  V  L  A  T  D  *  I  *  Q  G  V  F  N  Q  R  D  D  S  V  T  S  T  S  S  F  S  F  S  S  F  L  C  N  V  N  L  R  R  F  L  F  F  K  N  K  *  K  V  L  H  E  V  N  E :   E  N  *  K  K  K  K  K </second_frame>
            <third_frame>   P  T  K  F  *  G  *  R  W  Y  C  Y  C  W  *  R  F  *  H  K  :  *  W  C  C  C  I  G  L  S  K  W  R  E  G  Y  K  T  R  I  K  C  Y  W  K  D  L  R  L  R  G  C  C  S   : G  T  *  I  I  H  N  C  T  C  S  S  N  S  Q  S  Y  Q  K  C  *  L  R  G  F  S  N  *  L  L  *  N  K  *  S  L  C   : C  G  I  S  C  K  S  K  A  A  W  S  *  S   : R  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R   : G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W :   L  V  F  Q  T  I  Y  D  R  Q  C  L  Q  R  I  R  S  S  R  A  S  S  T  R  E  M  T  L  *  L  L  L  L  R  F  L  F  L  L  S  F  V  M  L  I  *  D  A  F  Y  S  S  K  I  N  E  R  F  F  T  K  *  M   : K  K  T  K  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82287" stop="82226"/>
                    <exon start="81760" stop="81661"/>
                    <exon start="81514" stop="81404"/>
                    <exon start="81324" stop="81283"/>
                    <exon start="81036" stop="80950"/>
                    <exon start="80802" stop="80713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRPSFKDKDGTVTAGNASSISDGAAALVLVSGEKAIKLGLNVIGKISGYADAAQEPELFTTAPALAIPKAIKSASLEASQIDYYEINEAFAVVSLANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVLRQKNGKYGAAGVCNGGGGASALVLELV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="76704" e_stop="76257"/>
            <exon e_start="75877" e_stop="75735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.911"/>
          <exon-only e_score="0.881"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="76704" e_stop="76257" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76256" i_stop="75878" i_length="379"/>
          </intron>
          <exon e_serial="2" e_score="0.881">
            <gDNA_exon_boundary e_start="75877" e_stop="75735" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76704" stop="76257"/>
              <exon start="75877" stop="75735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGTTAAAGAAAACCCCTTCTGTTATTGTGTGTGTATTAAAGTTTTGTTTTCTAAAAGTTAATTCTTGAAAACTAATAATGGAGTGGAAGCAAAGGGTACTATCTTATGGATTATAGGTGTTATTTTTTTTTGTCTGTGTGTTTTTGGGGGTCTTGAAGCCTCTTGTCCTTTATATTTGGTTTTTTAAAAGTTAAATGCTTGAAACTGATAATAGACTGGAAACTCAAATGGTATGGTCTTAGGGATGAGATGTGTACATGTTCAGCCTTACTGTTATCTTCCTATTTGGTTGTTATAGTTTCCTAGCAATCCTTCTTTCATTATATTCCTTTTGAGTCTAGGGTCTCTTGAAAACAACCTCTCTACCCAGCAAAGGTAGGGTGCGGTCTTTGTACATCTTATTCTCCACAGACTTCACTTGTGGGGTTACATTGGGTATGTTGTT : TTAGTTTTTTTAAGTATAGAGTATAAAACAATATGCTACTACTTTTTGCATTAATTCGCATGTGAATGGTAGCTTTCACCTGTTTGCTTCTACGAATTTACTTTATCATTTTGATATAAGCTTATTCCTACAGTAATTACTTT</gDNA_template>
            <first_frame> D  S  *  R  K  P  L  L  L  L  C  V  Y  *  S  F  V  F  *  K  L  I  L  E  N  *  *  W  S  G  S  K  G  Y  Y  L  M  D  Y  R  C  Y  F  F  L  S  V  C  F  W  G  S  *  S  L  L  S  F  I  F  G  F  L  K  V  K  C  L  K  L  I  I  D  W  K  L  K  W  Y  G  L  R  D  E  M  C  T  C  S  A  L  L  L  S  S  Y  L  V  V  I  V  S  *  Q  S  F  F  H  Y  I  P  F  E  S  R  V  S  *  K  Q  P  L  Y  P  A  K  V  G  C  G  L  C  T  S  Y  S  P  Q  T  S  L  V  G  L  H  W  V  C  C   : F  S  F  F  K  Y  R  V  *  N  N  M  L  L  L  F  A  L  I  R  M  *  M  V  A  F  T  C  L  L  L  R  I  Y  F  I  I  L  I  *  A  Y  S  Y  S  N  Y  F </first_frame>
            <second_frame>  T  V  K  E  N  P  F  C  Y  C  V  C  I  K  V  L  F  S  K  S  *  F  L  K  T  N  N  G  V  E  A  K  G  T  I  L  W  I  I  G  V  I  F  F  C  L  C  V  F  G  G  L  E  A  S  C  P  L  Y  L  V  F  *  K  L  N  A  *  N  *  *  *  T  G  N  S  N  G  M  V  L  G  M  R  C  V  H  V  Q  P  Y  C  Y  L  P  I  W  L  L  *  F  P  S  N  P  S  F  I  I  F  L  L  S  L  G  S  L  E  N  N  L  S  T  Q  Q  R  *  G  A  V  F  V  H  L  I  L  H  R  L  H  L  W  G  Y  I  G  Y  V  V  :  L  V  F  L  S  I  E  Y  K  T  I  C  Y  Y  F  L  H  *  F  A  C  E  W  *  L  S  P  V  C  F  Y  E  F  T  L  S  F  *  Y  K  L  I  P  T  V  I  T   </second_frame>
            <third_frame>   Q  L  K  K  T  P  S  V  I  V  C  V  L  K  F  C  F  L  K  V  N  S  *  K  L  I  M  E  W  K  Q  R  V  L  S  Y  G  L  *  V  L  F  F  F  V  C  V  F  L  G  V  L  K  P  L  V  L  Y  I  W  F  F  K  S  *  M  L  E  T  D  N  R  L  E  T  Q  M  V  W  S  *  G  *  D  V  Y  M  F  S  L  T  V  I  F  L  F  G  C  Y  S  F  L  A  I  L  L  S  L  Y  S  F  *  V  *  G  L  L  K  T  T  S  L  P  S  K  G  R  V  R  S  L  Y  I  L  F  S  T  D  F  T  C  G  V  T  L  G  M  L  F :   *  F  F  *  V  *  S  I  K  Q  Y  A  T  T  F  C  I  N  S  H  V  N  G  S  F  H  L  F  A  S  T  N  L  L  Y  H  F  D  I  S  L  F  L  Q  *  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="81705" e_stop="81404"/>
            <exon e_start="81324" e_stop="81283"/>
            <exon e_start="81036" e_stop="80950"/>
            <exon e_start="80802" e_stop="80694"/>
            <exon e_start="80371" e_stop="80189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.970" e_score="0.997"/>
          <exon-intron don_prob="0.967" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="81705" e_stop="81404" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.970">
            <gDNA_intron_boundary i_start="81403" i_stop="81325" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81324" e_stop="81283" e_length="42"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.984">
            <gDNA_intron_boundary i_start="81282" i_stop="81037" i_length="246"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81036" e_stop="80950" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80949" i_stop="80803" i_length="147"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80802" e_stop="80694" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.534" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80693" i_stop="80372" i_length="322"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="80371" e_stop="80189" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81705" stop="81404"/>
              <exon start="81324" stop="81283"/>
              <exon start="81036" stop="80950"/>
              <exon start="80802" stop="80694"/>
              <exon start="80371" stop="80189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369575" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATGTTATTGGAAAGATCTCAGGCTACGCGGATGCTGCTCAGGTACTTCATATCTATGAATTTGAGAATAGAGTTTAGGCACTCCTTGTGTAAGATTTTGGAGTACCAATGGTTATTACCTTTTTACTTTCCTTATCTGGTGGTTAAACTTACGCTCTTGATGTTCTCATCTAAATTTAATCTTGCAGGAACCTGAATTATTCACAACTGCACCTGCTCTAGCAATTCCCAAAGCTATCAAAAGTGCTAGCTTAGAGGCTTCTCAAATTGATTACTATGAAATAAATGAAGCCTTTGCT : GTGGTATCTCTTGCAAATCAAAAGCTGCTTGGTCTTAATCCA : GAAAAAGTTAATGTACACGGTGGGGCTGTATCTTTGGGGCATCCTCTTGGATGCAGTGGAGCTCGTATATTAGTTACACTTCTCGGG : GTGTTGAGACAGAAAAATGGCAAATATGGAGCTGCTGGTGTTTGCAATGGAGGAGGAGGTGCCTCCGCCCTTGTCCTAGAGCTTGTGTAATCCTTTTTTTTTGTTTTTG : GTTAGTGTTTCAGACTATTTATGATAGACAGTGCTTGCAACGGATTAGATCTAGCAGGGCGTCTTCAACCAGAGAGATGACTCTGTAACTTCTACTTCTTCGTTTTCTTTTTCTTCTTTCCTTTGTAATGTTAATTTAAGACGCTTTTTATTCTTCAAAAATAAATGAAAGGTTCTTCACGAA</gDNA_template>
            <first_frame> L  N  V  I  G  K  I  S  G  Y  A  D  A  A  Q  V  L  H  I  Y  E  F  E  N  R  V  *  A  L  L  V  *  D  F  G  V  P  M  V  I  T  F  L  L  S  L  S  G  G  *  T  Y  A  L  D  V  L  I  *  I  *  S  C  R  N  L  N  Y  S  Q  L  H  L  L  *  Q  F  P  K  L  S  K  V  L  A  *  R  L  L  K  L  I  T  M  K  *  M  K  P  L  L :   W  Y  L  L  Q  I  K  S  C  L  V  L  I  Q :   K  K  L  M  Y  T  V  G  L  Y  L  W  G  I  L  L  D  A  V  E  L  V  Y  *  L  H  F  S  G :   C  *  D  R  K  M  A  N  M  E  L  L  V  F  A  M  E  E  E  V  P  P  P  L  S  *  S  L  C  N  P  F  F  L  F  L  :  V  S  V  S  D  Y  L  *  *  T  V  L  A  T  D  *  I  *  Q  G  V  F  N  Q  R  D  D  S  V  T  S  T  S  S  F  S  F  S  S  F  L  C  N  V  N  L  R  R  F  L  F  F  K  N  K  *  K  V  L  H  E </first_frame>
            <second_frame>  *  M  L  L  E  R  S  Q  A  T  R  M  L  L  R  Y  F  I  S  M  N  L  R  I  E  F  R  H  S  L  C  K  I  L  E  Y  Q  W  L  L  P  F  Y  F  P  Y  L  V  V  K  L  T  L  L  M  F  S  S  K  F  N  L  A  G  T  *  I  I  H  N  C  T  C  S  S  N  S  Q  S  Y  Q  K  C  *  L  R  G  F  S  N  *  L  L  *  N  K  *  S  L  C   : C  G  I  S  C  K  S  K  A  A  W  S  *  S   : R  K  S  *  C  T  R  W  G  C  I  F  G  A  S  S  W  M  Q  W  S  S  Y  I  S  Y  T  S  R   : G  V  E  T  E  K  W  Q  I  W  S  C  W  C  L  Q  W  R  R  R  C  L  R  P  C  P  R  A  C  V  I  L  F  F  C  F  W :   L  V  F  Q  T  I  Y  D  R  Q  C  L  Q  R  I  R  S  S  R  A  S  S  T  R  E  M  T  L  *  L  L  L  L  R  F  L  F  L  L  S  F  V  M  L  I  *  D  A  F  Y  S  S  K  I  N  E  R  F  F  T   </second_frame>
            <third_frame>   K  C  Y  W  K  D  L  R  L  R  G  C  C  S  G  T  S  Y  L  *  I  *  E  *  S  L  G  T  P  C  V  R  F  W  S  T  N  G  Y  Y  L  F  T  F  L  I  W  W  L  N  L  R  S  *  C  S  H  L  N  L  I  L  Q  E  P  E  L  F  T  T  A  P  A  L  A  I  P  K  A  I  K  S  A  S  L  E  A  S  Q  I  D  Y  Y  E  I  N  E  A  F  A  :  V  V  S  L  A  N  Q  K  L  L  G  L  N  P  :  E  K  V  N  V  H  G  G  A  V  S  L  G  H  P  L  G  C  S  G  A  R  I  L  V  T  L  L  G  :  V  L  R  Q  K  N  G  K  Y  G  A  A  G  V  C  N  G  G  G  G  A  S  A  L  V  L  E  L  V  *  S  F  F  F  V  F   : G  *  C  F  R  L  F  M  I  D  S  A  C  N  G  L  D  L  A  G  R  L  Q  P  E  R  *  L  C  N  F  Y  F  F  V  F  F  F  F  F  P  L  *  C  *  F  K  T  L  F  I  L  Q  K  *  M  K  G  S  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81541" stop="81404"/>
                    <exon start="81324" stop="81283"/>
                    <exon start="81036" stop="80950"/>
                    <exon start="80802" stop="80713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSHLNLILQEPELFTTAPALAIPKAIKSASLEASQIDYYEINEAFAVVSLANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVLRQKNGKYGAAGVCNGGGGASALVLELV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="9" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81025" stop="80950"/>
                    <exon start="80802" stop="80694"/>
                    <exon start="80371" stop="80284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTRWGCIFGASSWMQWSSYISYTSRGVETEKWQIWSCWCLQWRRRCLRPCPRACVILFFCFWLVFQTIYDRQCLQRIRSSRASSTREMTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92696" PGL_stop="94771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92696" e_stop="92716"/>
            <exon e_start="93528" e_stop="93702"/>
            <exon e_start="94500" e_stop="94565"/>
            <exon e_start="94674" e_stop="94771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.876" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.986" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.916" e_score="0.955"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92696" e_stop="92716" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.876" acc_prob="0.802">
            <gDNA_intron_boundary i_start="92717" i_stop="93527" i_length="811"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="93528" e_stop="93702" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93703" i_stop="94499" i_length="797"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="94500" e_stop="94565" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.916">
            <gDNA_intron_boundary i_start="94566" i_stop="94673" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="94674" e_stop="94771" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92696" stop="92716"/>
              <exon start="93528" stop="93702"/>
              <exon start="94500" stop="94565"/>
              <exon start="94674" stop="94771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCATATATTTTGCTAATTG : CTCATAATTAATGGATTCTTTTGAAGAGGCATCAATTGACATGAAAATGGAAATATTTGAGGCAATTGAAGATAATTATGGTGGAGTTATTGTGAATATGAAGAAAGAGGAGTCTATGGATTTTCTTAAATTTCATACTATGCTCAAGGCTTCCATTTCTCATTGGAGGATAAAG : GGAAAGAAGGGTGTTTGGATTAAGTTACCTATAGAACTTGCTCATCTTGTTGATGCAGCAGTAAAG : GAGGGATTTTGGTATCATCATGCAGAGGCAACATATTTGATGCTTGTTTATTGGATTCCTCATGAAATTCCTCATACTTTTCCTGCTAATGCTTCTCA</gDNA_template>
            <first_frame> S  H  I  F  C  *  L  :  L  I  I  N  G  F  F  *  R  G  I  N  *  H  E  N  G  N  I  *  G  N  *  R  *  L  W  W  S  Y  C  E  Y  E  E  R  G  V  Y  G  F  S  *  I  S  Y  Y  A  Q  G  F  H  F  S  L  E  D  K   : G  K  E  G  C  L  D  *  V  T  Y  R  T  C  S  S  C  *  C  S  S  K   : G  G  I  L  V  S  S  C  R  G  N  I  F  D  A  C  L  L  D  S  S  *  N  S  S  Y  F  S  C  *  C  F  S </first_frame>
            <second_frame>  L  I  Y  F  A  N  C :   S  *  L  M  D  S  F  E  E  A  S  I  D  M  K  M  E  I  F  E  A  I  E  D  N  Y  G  G  V  I  V  N  M  K  K  E  E  S  M  D  F  L  K  F  H  T  M  L  K  A  S  I  S  H  W  R  I  K  :  G  K  K  G  V  W  I  K  L  P  I  E  L  A  H  L  V  D  A  A  V  K  :  E  G  F  W  Y  H  H  A  E  A  T  Y  L  M  L  V  Y  W  I  P  H  E  I  P  H  T  F  P  A  N  A  S   </second_frame>
            <third_frame>   S  Y  I  L  L  I   : A  H  N  *  W  I  L  L  K  R  H  Q  L  T  *  K  W  K  Y  L  R  Q  L  K  I  I  M  V  E  L  L  *  I  *  R  K  R  S  L  W  I  F  L  N  F  I  L  C  S  R  L  P  F  L  I  G  G  *  R :   E  R  R  V  F  G  L  S  Y  L  *  N  L  L  I  L  L  M  Q  Q  *  R :   R  D  F  G  I  I  M  Q  R  Q  H  I  *  C  L  F  I  G  F  L  M  K  F  L  I  L  F  L  L  M  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93535" stop="93702"/>
                    <exon start="94500" stop="94565"/>
                    <exon start="94674" stop="94769"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMDSFEEASIDMKMEIFEAIEDNYGGVIVNMKKEESMDFLKFHTMLKASISHWRIKGKKGVWIKLPIELAHLVDAAVKEGFWYHHAEATYLMLVYWIPHEIPHTFPANAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99415" PGL_stop="99566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99415" e_stop="99566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="99415" e_stop="99566" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99415" stop="99566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTGTATGTATATTACATAATTATAAGCGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</gDNA_template>
            <first_frame> Q  L  Y  V  Y  Y  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q   </first_frame>
            <second_frame>  N  C  M  Y  I  T  *  L  *  A  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  </second_frame>
            <third_frame>   I  V  C  I  L  H  N  Y  K  R  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0069G15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="108756" PGL_stop="109500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108756" e_stop="109500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="108756" e_stop="109500" e_length="745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108756" stop="109500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATATTTAAATTGTAGCACAACTAAAAATGTATAATTAAGTACAAAATTTAACAGCATCGTTAGGAAGGTAAAAAAGATAAATTTAAATATTTGAAAATTACAAGCTACAAAACTGGTGGCAGATTTACAACAGAAACAGAACCCTTTTCATTTTGCTCTGTAAGAATCCACCTCAACCCATGCAAGGCATCTCACAAGGCTTTGGTTAAATCAAAAATCTTCACAGCTGCTGCAATATCACGCAGCTCTTCTATTGAAACCTTCTTCCACACACCATCAATCATCAGGTGGCCTTTTGAACCTTCCAAAGGCACGTCGTTATGGCCATTTCCAATCTCCATATTCTCTGTGTACTGATTATCACCAGGCTCCTCTGTCTTCCTCATTTTCTTTGGATTCAAGCATTCATTCGCAGAAGCAGCCTCCCGCTTGCATCCACATTTATTGGTTTCTGGGATTTCATTGTCTGATGATTTTGCAACTTCTGCTGAATCATCAACAAAATCAAGAATTGGAAGACGACCAGTAGAACCAAATGCATGGGGCAGCATACCAATGGGGCATGCTTTCCATGTTTTTGCAACTACCCATTGGCTCCCGGTATCTGTTGTGTTCATCTTATTGCCCTTTACAACTCGACGCATAATTAGCTCAAGCTTCTGAGCAGCTTTGCGAAGAGAATCTTCTTCCCTGGATAGTAGGAAGCTTTCTGAATTATTGGTAGAAGGATCTGAGTGAATAA</gDNA_template>
            <first_frame> T  I  F  K  L  *  H  N  *  K  C  I  I  K  Y  K  I  *  Q  H  R  *  E  G  K  K  D  K  F  K  Y  L  K  I  T  S  Y  K  T  G  G  R  F  T  T  E  T  E  P  F  S  F  C  S  V  R  I  H  L  N  P  C  K  A  S  H  K  A  L  V  K  S  K  I  F  T  A  A  A  I  S  R  S  S  S  I  E  T  F  F  H  T  P  S  I  I  R  W  P  F  E  P  S  K  G  T  S  L  W  P  F  P  I  S  I  F  S  V  Y  *  L  S  P  G  S  S  V  F  L  I  F  F  G  F  K  H  S  F  A  E  A  A  S  R  L  H  P  H  L  L  V  S  G  I  S  L  S  D  D  F  A  T  S  A  E  S  S  T  K  S  R  I  G  R  R  P  V  E  P  N  A  W  G  S  I  P  M  G  H  A  F  H  V  F  A  T  T  H  W  L  P  V  S  V  V  F  I  L  L  P  F  T  T  R  R  I  I  S  S  S  F  *  A  A  L  R  R  E  S  S  S  L  D  S  R  K  L  S  E  L  L  V  E  G  S  E  *  I  </first_frame>
            <second_frame>  Q  Y  L  N  C  S  T  T  K  N  V  *  L  S  T  K  F  N  S  I  V  R  K  V  K  K  I  N  L  N  I  *  K  L  Q  A  T  K  L  V  A  D  L  Q  Q  K  Q  N  P  F  H  F  A  L  *  E  S  T  S  T  H  A  R  H  L  T  R  L  W  L  N  Q  K  S  S  Q  L  L  Q  Y  H  A  A  L  L  L  K  P  S  S  T  H  H  Q  S  S  G  G  L  L  N  L  P  K  A  R  R  Y  G  H  F  Q  S  P  Y  S  L  C  T  D  Y  H  Q  A  P  L  S  S  S  F  S  L  D  S  S  I  H  S  Q  K  Q  P  P  A  C  I  H  I  Y  W  F  L  G  F  H  C  L  M  I  L  Q  L  L  L  N  H  Q  Q  N  Q  E  L  E  D  D  Q  *  N  Q  M  H  G  A  A  Y  Q  W  G  M  L  S  M  F  L  Q  L  P  I  G  S  R  Y  L  L  C  S  S  Y  C  P  L  Q  L  D  A  *  L  A  Q  A  S  E  Q  L  C  E  E  N  L  L  P  W  I  V  G  S  F  L  N  Y  W  *  K  D  L  S  E  * </second_frame>
            <third_frame>   N  I  *  I  V  A  Q  L  K  M  Y  N  *  V  Q  N  L  T  A  S  L  G  R  *  K  R  *  I  *  I  F  E  N  Y  K  L  Q  N  W  W  Q  I  Y  N  R  N  R  T  L  F  I  L  L  C  K  N  P  P  Q  P  M  Q  G  I  S  Q  G  F  G  *  I  K  N  L  H  S  C  C  N  I  T  Q  L  F  Y  *  N  L  L  P  H  T  I  N  H  Q  V  A  F  *  T  F  Q  R  H  V  V  M  A  I  S  N  L  H  I  L  C  V  L  I  I  T  R  L  L  C  L  P  H  F  L  W  I  Q  A  F  I  R  R  S  S  L  P  L  A  S  T  F  I  G  F  W  D  F  I  V  *  *  F  C  N  F  C  *  I  I  N  K  I  K  N  W  K  T  T  S  R  T  K  C  M  G  Q  H  T  N  G  A  C  F  P  C  F  C  N  Y  P  L  A  P  G  I  C  C  V  H  L  I  A  L  Y  N  S  T  H  N  *  L  K  L  L  S  S  F  A  K  R  I  F  F  P  G  *  *  E  A  F  *  I  I  G  R  R  I  *  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108922" stop="109287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESTSTHARHLTRLWLNQKSSQLLQYHAALLLKPSSTHHQSSGGLLNLPKARRYGHFQSPYSLCTDYHQAPLSSSFSLDSSIHSQKQPPACIHIYWFLGFHCLMILQLLLNHQQNQELEDDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109116" stop="109421"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPGSSVFLIFFGFKHSFAEAASRLHPHLLVSGISLSDDFATSAESSTKSRIGRRPVEPNAWGSIPMGHAFHVFATTHWLPVSVVFILLPFTTRRIISSSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108822" stop="109115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGKKDKFKYLKITSYKTGGRFTTETEPFSFCSVRIHLNPCKASHKALVKSKIFTAAAISRSSSIETFFHTPSIIRWPFEPSKGTSLWPFPISIFSVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="116540" PGL_stop="109231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116540" e_stop="116371"/>
            <exon e_start="116290" e_stop="116199"/>
            <exon e_start="116056" e_stop="115985"/>
            <exon e_start="115555" e_stop="115449"/>
            <exon e_start="115132" e_stop="115077"/>
            <exon e_start="113892" e_stop="113733"/>
            <exon e_start="111580" e_stop="111500"/>
            <exon e_start="110794" e_stop="110495"/>
            <exon e_start="109803" e_stop="109231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.550" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.496" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.587" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116540" e_stop="116371" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116370" i_stop="116291" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116290" e_stop="116199" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.550" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116198" i_stop="116057" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116056" e_stop="115985" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="115984" i_stop="115556" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115555" e_stop="115449" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="115448" i_stop="115133" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115132" e_stop="115077" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.822">
            <gDNA_intron_boundary i_start="115076" i_stop="113893" i_length="1184"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113892" e_stop="113733" e_length="160"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113732" i_stop="111581" i_length="2152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111580" e_stop="111500" e_length="81"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.496">
            <gDNA_intron_boundary i_start="111499" i_stop="110795" i_length="705"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="110794" e_stop="110495" e_length="300"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.587">
            <gDNA_intron_boundary i_start="110494" i_stop="109804" i_length="691"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="109803" e_stop="109231" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116540" stop="116371"/>
              <exon start="116290" stop="116199"/>
              <exon start="116056" stop="115985"/>
              <exon start="115555" stop="115449"/>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116540" stop="116371"/>
              <exon start="116290" stop="116199"/>
              <exon start="116056" stop="115985"/>
              <exon start="115555" stop="115449"/>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116540" stop="116371"/>
              <exon start="116290" stop="116199"/>
              <exon start="116056" stop="115985"/>
              <exon start="115555" stop="115449"/>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116517" stop="116371"/>
              <exon start="116290" stop="116199"/>
              <exon start="116056" stop="115985"/>
              <exon start="115555" stop="115449"/>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116392" stop="116371"/>
              <exon start="116290" stop="116199"/>
              <exon start="116056" stop="115985"/>
              <exon start="115555" stop="115449"/>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115132" stop="115077"/>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111500"/>
              <exon start="110794" stop="110495"/>
              <exon start="109803" stop="109698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113892" stop="113733"/>
              <exon start="111580" stop="111500"/>
              <exon start="110794" stop="110547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111520" stop="111500"/>
              <exon start="110794" stop="110495"/>
              <exon start="109803" stop="109593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110649" stop="110495"/>
              <exon start="109803" stop="109231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110611" stop="110495"/>
              <exon start="109803" stop="109492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAATGGAGTCTCTACTAGGGTTTATCGAACCATCAGCTGACGAAACTGTGGAAGGCAACTCTCTAGCTCTCAAATTGGTGCCATGGATAAGCTGGGATGAATGGAACTCTATTCGAGATTCCCTTTTCTCTTCTTCTCCTCAATCTGTTGCTTTTGCTCTTCAAAGG : ATATCGACCTGGAGGAGCAGAGGATGCATTCCTGTCGCAGTGGATGTTACAGCTTCAATTATAGAAATTCAACAGAAAGATTCCTTTTTTAG : GAAGGACCTAGGTGGAAATGCTCTGCAGTCAGAAGAAATGCTTTCAATGCTATATTGTATGGCAATTATGAG : GCTTGTAAATGGTGTTGTTGAGAAGACCCGAAAGAAGGCAGAAATTTCGATAGCTGAGGCTGCAAATGCTATTGGCATTCCGCGTATGCTGATTGATGTTCGCCATG : AGGGCTCTCATCGTGATCTTCCTTCACTGCAGTTGGTCCGTCTTGCCTCTACCAAG : GCACTTGACTGGTTGAAATCATATTATTGGGAACCTCAAAAGAATGTAATTCGAAGGGATTCAACTGTCAACCTGAGGAATGAAATTAAACATAAACTGCTAGAGATGGCTTTCTGTTTGAAAGTGAAGCAGACTAACAGTTCACATACTTTGGGAAAAC : GAATGAGACTTGGGCAACTTTGTGCTAGAAACAAGTTTCTCCCTTTCATTTCTGGGAATCCACCATATTCTAAATCTTCTG : GTTCTAAGAAACAGATTACTAGAGCTATGAAGGCCATTCTGCGATTGTATACTTCCTCATCTTCAGAAGTGGCATCTGTGCTTTTGGAACTTATGCTGCAGTCAGTAGATTCCTTAAATTTTCCAGGGGACTCAGAGAATGCCCCCACAATCCATGAAACTGTTGACATGCACAGTGCATACGATGACTGGAAACCAATCCTGAAGAAATTGTCAAATAGAGAACCCGATTTGCTTCTGACTCTTCTCAGGGCAGCTCTAGACAAGATTGAGACTATGGGAGCCTCAAAGCATCAGCTTG : GTGCAAATGAATCTCTTTTGATTGGACAATTATCTTACCTGTGTGAACAAATAGTTGCAAACCTGAAGACACTAAAGCCTCTTAACAATAATGATCTTGCTGCTGACGGGGAAGACTCTTCAAGAAAACTTAGTCTTCCAGAGGCAACGCTACAAGAACTATTACATAAATGTTTATTCTTGTCCTCTAACAACAACAATCAGCTGATGAAATCCGGTCTTGTTATTGCTCAGATGATTGGAAGGAACTCTTTCATCGATAAGTTAAATAAGCTCTGTTCACTGAGTGTATTTGATTCAGAGATTATTCACTCAGATCCTTCTACCAATAATTCAGAAAGCTTCCTACTATCCAGGGAAGAAGATTCTCTTCGCAAAGCTGCTCAGAAGCTTGAGCTAATTATGCGTCGAGTTGTAAAGGGCAATAAGATGAACACAACAGATACCGGGAGCCAATGGGTAGTTGCAAAAACATGGAAAGCATGCCCCATTGGTATGCTGCCCCATGCATTTGGTTCTACTGGTCGTCTTCCAATTCTTGATTTTGTTGATGATTCAGCAGAAGTTGCAAAAT</gDNA_template>
            <first_frame> L  Q  W  S  L  Y  *  G  L  S  N  H  Q  L  T  K  L  W  K  A  T  L  *  L  S  N  W  C  H  G  *  A  G  M  N  G  T  L  F  E  I  P  F  S  L  L  L  L  N  L  L  L  L  L  F  K  G :   Y  R  P  G  G  A  E  D  A  F  L  S  Q  W  M  L  Q  L  Q  L  *  K  F  N  R  K  I  P  F  L   : G  R  T  *  V  E  M  L  C  S  Q  K  K  C  F  Q  C  Y  I  V  W  Q  L  *   : G  L  *  M  V  L  L  R  R  P  E  R  R  Q  K  F  R  *  L  R  L  Q  M  L  L  A  F  R  V  C  *  L  M  F  A  M  :  R  A  L  I  V  I  F  L  H  C  S  W  S  V  L  P  L  P  R :   H  L  T  G  *  N  H  I  I  G  N  L  K  R  M  *  F  E  G  I  Q  L  S  T  *  G  M  K  L  N  I  N  C  *  R  W  L  S  V  *  K  *  S  R  L  T  V  H  I  L  W  E  N  :  E  *  D  L  G  N  F  V  L  E  T  S  F  S  L  S  F  L  G  I  H  H  I  L  N  L  L  :  V  L  R  N  R  L  L  E  L  *  R  P  F  C  D  C  I  L  P  H  L  Q  K  W  H  L  C  F  W  N  L  C  C  S  Q  *  I  P  *  I  F  Q  G  T  Q  R  M  P  P  Q  S  M  K  L  L  T  C  T  V  H  T  M  T  G  N  Q  S  *  R  N  C  Q  I  E  N  P  I  C  F  *  L  F  S  G  Q  L  *  T  R  L  R  L  W  E  P  Q  S  I  S  L  :  V  Q  M  N  L  F  *  L  D  N  Y  L  T  C  V  N  K  *  L  Q  T  *  R  H  *  S  L  L  T  I  M  I  L  L  L  T  G  K  T  L  Q  E  N  L  V  F  Q  R  Q  R  Y  K  N  Y  Y  I  N  V  Y  S  C  P  L  T  T  T  I  S  *  *  N  P  V  L  L  L  L  R  *  L  E  G  T  L  S  S  I  S  *  I  S  S  V  H  *  V  Y  L  I  Q  R  L  F  T  Q  I  L  L  P  I  I  Q  K  A  S  Y  Y  P  G  K  K  I  L  F  A  K  L  L  R  S  L  S  *  L  C  V  E  L  *  R  A  I  R  *  T  Q  Q  I  P  G  A  N  G  *  L  Q  K  H  G  K  H  A  P  L  V  C  C  P  M  H  L  V  L  L  V  V  F  Q  F  L  I  L  L  M  I  Q  Q  K  L  Q  N </first_frame>
            <second_frame>  Y  N  G  V  S  T  R  V  Y  R  T  I  S  *  R  N  C  G  R  Q  L  S  S  S  Q  I  G  A  M  D  K  L  G  *  M  E  L  Y  S  R  F  P  F  L  F  F  S  S  I  C  C  F  C  S  S  K   : D  I  D  L  E  E  Q  R  M  H  S  C  R  S  G  C  Y  S  F  N  Y  R  N  S  T  E  R  F  L  F  *  :  E  G  P  R  W  K  C  S  A  V  R  R  N  A  F  N  A  I  L  Y  G  N  Y  E  :  A  C  K  W  C  C  *  E  D  P  K  E  G  R  N  F  D  S  *  G  C  K  C  Y  W  H  S  A  Y  A  D  *  C  S  P  * :   G  L  S  S  *  S  S  F  T  A  V  G  P  S  C  L  Y  Q   : G  T  *  L  V  E  I  I  L  L  G  T  S  K  E  C  N  S  K  G  F  N  C  Q  P  E  E  *  N  *  T  *  T  A  R  D  G  F  L  F  E  S  E  A  D  *  Q  F  T  Y  F  G  K  T :   N  E  T  W  A  T  L  C  *  K  Q  V  S  P  F  H  F  W  E  S  T  I  F  *  I  F  W :   F  *  E  T  D  Y  *  S  Y  E  G  H  S  A  I  V  Y  F  L  I  F  R  S  G  I  C  A  F  G  T  Y  A  A  V  S  R  F  L  K  F  S  R  G  L  R  E  C  P  H  N  P  *  N  C  *  H  A  Q  C  I  R  *  L  E  T  N  P  E  E  I  V  K  *  R  T  R  F  A  S  D  S  S  Q  G  S  S  R  Q  D  *  D  Y  G  S  L  K  A  S  A  W :   C  K  *  I  S  F  D  W  T  I  I  L  P  V  *  T  N  S  C  K  P  E  D  T  K  A  S  *  Q  *  *  S  C  C  *  R  G  R  L  F  K  K  T  *  S  S  R  G  N  A  T  R  T  I  T  *  M  F  I  L  V  L  *  Q  Q  Q  S  A  D  E  I  R  S  C  Y  C  S  D  D  W  K  E  L  F  H  R  *  V  K  *  A  L  F  T  E  C  I  *  F  R  D  Y  S  L  R  S  F  Y  Q  *  F  R  K  L  P  T  I  Q  G  R  R  F  S  S  Q  S  C  S  E  A  *  A  N  Y  A  S  S  C  K  G  Q  *  D  E  H  N  R  Y  R  E  P  M  G  S  C  K  N  M  E  S  M  P  H  W  Y  A  A  P  C  I  W  F  Y  W  S  S  S  N  S  *  F  C  *  *  F  S  R  S  C  K   </second_frame>
            <third_frame>   T  M  E  S  L  L  G  F  I  E  P  S  A  D  E  T  V  E  G  N  S  L  A  L  K  L  V  P  W  I  S  W  D  E  W  N  S  I  R  D  S  L  F  S  S  S  P  Q  S  V  A  F  A  L  Q  R  :  I  S  T  W  R  S  R  G  C  I  P  V  A  V  D  V  T  A  S  I  I  E  I  Q  Q  K  D  S  F  F  R :   K  D  L  G  G  N  A  L  Q  S  E  E  M  L  S  M  L  Y  C  M  A  I  M  R :   L  V  N  G  V  V  E  K  T  R  K  K  A  E  I  S  I  A  E  A  A  N  A  I  G  I  P  R  M  L  I  D  V  R  H   : E  G  S  H  R  D  L  P  S  L  Q  L  V  R  L  A  S  T  K  :  A  L  D  W  L  K  S  Y  Y  W  E  P  Q  K  N  V  I  R  R  D  S  T  V  N  L  R  N  E  I  K  H  K  L  L  E  M  A  F  C  L  K  V  K  Q  T  N  S  S  H  T  L  G  K   : R  M  R  L  G  Q  L  C  A  R  N  K  F  L  P  F  I  S  G  N  P  P  Y  S  K  S  S   : G  S  K  K  Q  I  T  R  A  M  K  A  I  L  R  L  Y  T  S  S  S  S  E  V  A  S  V  L  L  E  L  M  L  Q  S  V  D  S  L  N  F  P  G  D  S  E  N  A  P  T  I  H  E  T  V  D  M  H  S  A  Y  D  D  W  K  P  I  L  K  K  L  S  N  R  E  P  D  L  L  L  T  L  L  R  A  A  L  D  K  I  E  T  M  G  A  S  K  H  Q  L   : G  A  N  E  S  L  L  I  G  Q  L  S  Y  L  C  E  Q  I  V  A  N  L  K  T  L  K  P  L  N  N  N  D  L  A  A  D  G  E  D  S  S  R  K  L  S  L  P  E  A  T  L  Q  E  L  L  H  K  C  L  F  L  S  S  N  N  N  N  Q  L  M  K  S  G  L  V  I  A  Q  M  I  G  R  N  S  F  I  D  K  L  N  K  L  C  S  L  S  V  F  D  S  E  I  I  H  S  D  P  S  T  N  N  S  E  S  F  L  L  S  R  E  E  D  S  L  R  K  A  A  Q  K  L  E  L  I  M  R  R  V  V  K  G  N  K  M  N  T  T  D  T  G  S  Q  W  V  V  A  K  T  W  K  A  C  P  I  G  M  L  P  H  A  F  G  S  T  G  R  L  P  I  L  D  F  V  D  D  S  A  E  V  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116538" stop="116371"/>
                    <exon start="116290" stop="116199"/>
                    <exon start="116056" stop="115985"/>
                    <exon start="115555" stop="115449"/>
                    <exon start="115132" stop="115077"/>
                    <exon start="113892" stop="113733"/>
                    <exon start="111580" stop="111500"/>
                    <exon start="110794" stop="110495"/>
                    <exon start="109803" stop="109232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMESLLGFIEPSADETVEGNSLALKLVPWISWDEWNSIRDSLFSSSPQSVAFALQRISTWRSRGCIPVAVDVTASIIEIQQKDSFFRKDLGGNALQSEEMLSMLYCMAIMRLVNGVVEKTRKKAEISIAEAANAIGIPRMLIDVRHEGSHRDLPSLQLVRLASTKALDWLKSYYWEPQKNVIRRDSTVNLRNEIKHKLLEMAFCLKVKQTNSSHTLGKRMRLGQLCARNKFLPFISGNPPYSKSSGSKKQITRAMKAILRLYTSSSSEVASVLLELMLQSVDSLNFPGDSENAPTIHETVDMHSAYDDWKPILKKLSNREPDLLLTLLRAALDKIETMGASKHQLGANESLLIGQLSYLCEQIVANLKTLKPLNNNDLAADGEDSSRKLSLPEATLQELLHKCLFLSSNNNNQLMKSGLVIAQMIGRNSFIDKLNKLCSLSVFDSEIIHSDPSTNNSESFLLSREEDSLRKAAQKLELIMRRVVKGNKMNTTDTGSQWVVAKTWKACPIGMLPHAFGSTGRLPILDFVDDSAEVAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="123372" PGL_stop="126730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123372" e_stop="123515"/>
            <exon e_start="125993" e_stop="126730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.882"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="123372" e_stop="123515" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="123516" i_stop="125992" i_length="2477"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="125993" e_stop="126730" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123372" stop="123515"/>
              <exon start="125993" stop="126730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGAATCAGAGGCCCAATCCGTTTATTTCCCAAGAGAGTAAGCGGCTGAGGGTTGACACTTCTGAGTGAGAGAGACTGAGGCTGAGCACCACCAGCAACCACCGGCGACCGGCGACGGAGATTCCATTATTTCATTATTAAAG : AGTTGCATCAAGTTTGCTGGTGTTTATGGGCATAAGATGGCCAAGGATTCTAACACCGAAGCAGCTCTCGCAAATAATACTGAGCCAGAAGAACCCACTAAAAGCGCTTCAATGTTTTGACGAAGCAAAATGCAAGTATCCAACTTACCGTCATAATGGTCCTGTTTATAGCACTATGATTAATATTTTGGGCAGATCAGGGAGAATAACTGAGATGAAGCGAACAATTAATCAGATGAAAGAGGACTCGTGTGAGTGTCATGACTCAATATTTGTGAATGCCATTAGAAGCTATGCGCAAGCTGGATTAACAAACGAAGCCATTTTTCTTTTTAAGTCTCTTCCGGAGTTCAATTGTATAGAATGGACAAGATCTTTGAGTACTCTTTTGGAGATATTGGTAGAAGAATCTAAGCTAGAATCTGTTTATCAGTTGTTCCTTGAGAACTCTTGTGGATGGGAAGTGAAGTCTCGGGCACATTTCTTGAATTTGTTGATGAATGCTCTTTGTAGAATGAAACGCTCTGATCTTGCATTGCATATTTTCCAAGAGATGAGTTACCAGAACTGCTATCCAAACAAAGAGAGTTACAGGATCTTGATGAGGGGTTTATGTGAAGAAAAACGGCTCAATGAGGCTACTCATCTATTGTACTCAATGTTTTGGAGGATATCTCAGAAGGGAAGTGGTGAAGATGTGGTTGTCTATCGAGCTTTATTGGAAGCGTTGTGTGAAAA</gDNA_template>
            <first_frame> Y  E  S  E  A  Q  S  V  Y  F  P  R  E  *  A  A  E  G  *  H  F  *  V  R  E  T  E  A  E  H  H  Q  Q  P  P  A  T  G  D  G  D  S  I  I  S  L  L  K  :  S  C  I  K  F  A  G  V  Y  G  H  K  M  A  K  D  S  N  T  E  A  A  L  A  N  N  T  E  P  E  E  P  T  K  S  A  S  M  F  *  R  S  K  M  Q  V  S  N  L  P  S  *  W  S  C  L  *  H  Y  D  *  Y  F  G  Q  I  R  E  N  N  *  D  E  A  N  N  *  S  D  E  R  G  L  V  *  V  S  *  L  N  I  C  E  C  H  *  K  L  C  A  S  W  I  N  K  R  S  H  F  S  F  *  V  S  S  G  V  Q  L  Y  R  M  D  K  I  F  E  Y  S  F  G  D  I  G  R  R  I  *  A  R  I  C  L  S  V  V  P  *  E  L  L  W  M  G  S  E  V  S  G  T  F  L  E  F  V  D  E  C  S  L  *  N  E  T  L  *  S  C  I  A  Y  F  P  R  D  E  L  P  E  L  L  S  K  Q  R  E  L  Q  D  L  D  E  G  F  M  *  R  K  T  A  Q  *  G  Y  S  S  I  V  L  N  V  L  E  D  I  S  E  G  K  W  *  R  C  G  C  L  S  S  F  I  G  S  V  V  *  K </first_frame>
            <second_frame>  M  N  Q  R  P  N  P  F  I  S  Q  E  S  K  R  L  R  V  D  T  S  E  *  E  R  L  R  L  S  T  T  S  N  H  R  R  P  A  T  E  I  P  L  F  H  Y  *  R :   V  A  S  S  L  L  V  F  M  G  I  R  W  P  R  I  L  T  P  K  Q  L  S  Q  I  I  L  S  Q  K  N  P  L  K  A  L  Q  C  F  D  E  A  K  C  K  Y  P  T  Y  R  H  N  G  P  V  Y  S  T  M  I  N  I  L  G  R  S  G  R  I  T  E  M  K  R  T  I  N  Q  M  K  E  D  S  C  E  C  H  D  S  I  F  V  N  A  I  R  S  Y  A  Q  A  G  L  T  N  E  A  I  F  L  F  K  S  L  P  E  F  N  C  I  E  W  T  R  S  L  S  T  L  L  E  I  L  V  E  E  S  K  L  E  S  V  Y  Q  L  F  L  E  N  S  C  G  W  E  V  K  S  R  A  H  F  L  N  L  L  M  N  A  L  C  R  M  K  R  S  D  L  A  L  H  I  F  Q  E  M  S  Y  Q  N  C  Y  P  N  K  E  S  Y  R  I  L  M  R  G  L  C  E  E  K  R  L  N  E  A  T  H  L  L  Y  S  M  F  W  R  I  S  Q  K  G  S  G  E  D  V  V  V  Y  R  A  L  L  E  A  L  C  E   </second_frame>
            <third_frame>   *  I  R  G  P  I  R  L  F  P  K  R  V  S  G  *  G  L  T  L  L  S  E  R  D  *  G  *  A  P  P  A  T  T  G  D  R  R  R  R  F  H  Y  F  I  I  K   : E  L  H  Q  V  C  W  C  L  W  A  *  D  G  Q  G  F  *  H  R  S  S  S  R  K  *  Y  *  A  R  R  T  H  *  K  R  F  N  V  L  T  K  Q  N  A  S  I  Q  L  T  V  I  M  V  L  F  I  A  L  *  L  I  F  W  A  D  Q  G  E  *  L  R  *  S  E  Q  L  I  R  *  K  R  T  R  V  S  V  M  T  Q  Y  L  *  M  P  L  E  A  M  R  K  L  D  *  Q  T  K  P  F  F  F  L  S  L  F  R  S  S  I  V  *  N  G  Q  D  L  *  V  L  F  W  R  Y  W  *  K  N  L  S  *  N  L  F  I  S  C  S  L  R  T  L  V  D  G  K  *  S  L  G  H  I  S  *  I  C  *  *  M  L  F  V  E  *  N  A  L  I  L  H  C  I  F  S  K  R  *  V  T  R  T  A  I  Q  T  K  R  V  T  G  S  *  *  G  V  Y  V  K  K  N  G  S  M  R  L  L  I  Y  C  T  Q  C  F  G  G  Y  L  R  R  E  V  V  K  M  W  L  S  I  E  L  Y  W  K  R  C  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123514" stop="123515"/>
                    <exon start="125993" stop="126728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVASSLLVFMGIRWPRILTPKQLSQIILSQKNPLKALQCFDEAKCKYPTYRHNGPVYSTMINILGRSGRITEMKRTINQMKEDSCECHDSIFVNAIRSYAQAGLTNEAIFLFKSLPEFNCIEWTRSLSTLLEILVEESKLESVYQLFLENSCGWEVKSRAHFLNLLMNALCRMKRSDLALHIFQEMSYQNCYPNKESYRILMRGLCEEKRLNEATHLLYSMFWRISQKGSGEDVVVYRALLEALCE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="127604" PGL_stop="126867"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127604" e_stop="126867"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="127604" e_stop="126867" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127604" stop="126867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTAAGCAAAAAAGGTTTATTACCAAATAGAAAATGGGCGAAATCCAGCAATACAGTTGTAGTTATAGACAACGCTAAGGTGTCTGTAGCTGCTCTAGTGTCTTGAAAGAAGCCTCATTCAATCCATTTTCACAACAGATTGCACCTAATAATGACTGCCAAACATTGATATCTGGAGTCAAGGCTAGAGAGATCATGTCCTCCAAACACATAATTGCACTGTGCAAATCACCTACTTGGCAGAGACCTCGGATAAGAGAATTCAAAGTTCCAACTCTAGGCCAAAAGGAATTAATTGACATTTGCTCCATCACCTTGCTTGCTTCAACGTATTTACCATCTTCACATAACCCATCTACCAAAGTTCCATAAGTTTCATAGTTTGGCACGCAACCTACTTGCCTAGACATCCTTTCCAAATACTTAATAGCACAAGTAGATTTTCTTTCATGGCATAAGCCTTTTATAACTACATTATACAATCTAATATTCGGAACACAGTTTTTTTGCACCATCTCACAATCAATGACCATAATTGCCTCGTCAACCTGGCCATCCCTGAAAAGAGCAGCTACCTTTGCTTCATAAATCGCCACTGACGGTTTGAAGCCTCTCTCATGCATTTCCTTGAGCACTTTGTCACCTTCATCAATCTTGCCTTCGGCGTAAAAGTCAACAGCCATCGCTCTGTAGCTATCTGAACTGGGAACTATGCCTTTTATCAAAGCTTCATTAAT</gDNA_template>
            <first_frame> C  *  A  K  K  V  Y  Y  Q  I  E  N  G  R  N  P  A  I  Q  L  *  L  *  T  T  L  R  C  L  *  L  L  *  C  L  E  R  S  L  I  Q  S  I  F  T  T  D  C  T  *  *  *  L  P  N  I  D  I  W  S  Q  G  *  R  D  H  V  L  Q  T  H  N  C  T  V  Q  I  T  Y  L  A  E  T  S  D  K  R  I  Q  S  S  N  S  R  P  K  G  I  N  *  H  L  L  H  H  L  A  C  F  N  V  F  T  I  F  T  *  P  I  Y  Q  S  S  I  S  F  I  V  W  H  A  T  Y  L  P  R  H  P  F  Q  I  L  N  S  T  S  R  F  S  F  M  A  *  A  F  Y  N  Y  I  I  Q  S  N  I  R  N  T  V  F  L  H  H  L  T  I  N  D  H  N  C  L  V  N  L  A  I  P  E  K  S  S  Y  L  C  F  I  N  R  H  *  R  F  E  A  S  L  M  H  F  L  E  H  F  V  T  F  I  N  L  A  F  G  V  K  V  N  S  H  R  S  V  A  I  *  T  G  N  Y  A  F  Y  Q  S  F  I  N </first_frame>
            <second_frame>  V  K  Q  K  R  F  I  T  K  *  K  M  G  E  I  Q  Q  Y  S  C  S  Y  R  Q  R  *  G  V  C  S  C  S  S  V  L  K  E  A  S  F  N  P  F  S  Q  Q  I  A  P  N  N  D  C  Q  T  L  I  S  G  V  K  A  R  E  I  M  S  S  K  H  I  I  A  L  C  K  S  P  T  W  Q  R  P  R  I  R  E  F  K  V  P  T  L  G  Q  K  E  L  I  D  I  C  S  I  T  L  L  A  S  T  Y  L  P  S  S  H  N  P  S  T  K  V  P  *  V  S  *  F  G  T  Q  P  T  C  L  D  I  L  S  K  Y  L  I  A  Q  V  D  F  L  S  W  H  K  P  F  I  T  T  L  Y  N  L  I  F  G  T  Q  F  F  C  T  I  S  Q  S  M  T  I  I  A  S  S  T  W  P  S  L  K  R  A  A  T  F  A  S  *  I  A  T  D  G  L  K  P  L  S  C  I  S  L  S  T  L  S  P  S  S  I  L  P  S  A  *  K  S  T  A  I  A  L  *  L  S  E  L  G  T  M  P  F  I  K  A  S  L   </second_frame>
            <third_frame>   L  S  K  K  G  L  L  P  N  R  K  W  A  K  S  S  N  T  V  V  V  I  D  N  A  K  V  S  V  A  A  L  V  S  *  K  K  P  H  S  I  H  F  H  N  R  L  H  L  I  M  T  A  K  H  *  Y  L  E  S  R  L  E  R  S  C  P  P  N  T  *  L  H  C  A  N  H  L  L  G  R  D  L  G  *  E  N  S  K  F  Q  L  *  A  K  R  N  *  L  T  F  A  P  S  P  C  L  L  Q  R  I  Y  H  L  H  I  T  H  L  P  K  F  H  K  F  H  S  L  A  R  N  L  L  A  *  T  S  F  P  N  T  *  *  H  K  *  I  F  F  H  G  I  S  L  L  *  L  H  Y  T  I  *  Y  S  E  H  S  F  F  A  P  S  H  N  Q  *  P  *  L  P  R  Q  P  G  H  P  *  K  E  Q  L  P  L  L  H  K  S  P  L  T  V  *  S  L  S  H  A  F  P  *  A  L  C  H  L  H  Q  S  C  L  R  R  K  S  Q  Q  P  S  L  C  S  Y  L  N  W  E  L  C  L  L  S  K  L  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127525" stop="127232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVCSCSSVLKEASFNPFSQQIAPNNDCQTLISGVKAREIMSSKHIIALCKSPTWQRPRIREFKVPTLGQKELIDICSITLLASTYLPSSHNPSTKVP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127222" stop="127016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGTQPTCLDILSKYLIAQVDFLSWHKPFITTLYNLIFGTQFFCTISQSMTIIASSTWPSLKRAATFAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="134374" PGL_stop="138130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134374" e_stop="134459"/>
            <exon e_start="137546" e_stop="138130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134374" e_stop="134459" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="134460" i_stop="137545" i_length="3086"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137546" e_stop="138130" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134374" stop="134459"/>
              <exon start="137546" stop="137759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134382" stop="134459"/>
              <exon start="137546" stop="138130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134405" stop="134459"/>
              <exon start="137546" stop="138130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGACACTGAGGCTGAGCACCACCACAAGCAACTAGCGGCGACCGGCGACCGGCGACGGAGATTCCATTCTCTCATTATTAAAG : AAATGGTGATTCCTCCACCAGTTAGACCAGACAGAGTGCTGAAGTATCTCAAACCTTACGTGCTGAGGATGCATTTCACAAACAAGTATGTAAATGCTCAAGTAGTTCACACGCCAACAGCAACAGTGGCTGCTTCTGCAAGCTCACAAGAGAAAGGCTTAAGGCTTGCCATGGTAGAATCAAAAGAAAATACTAGAGACGTTGCTGCTGCAGCAAAAATAGGTAAGTTGTTGGGAGAGCGGTTGCAGGCTAAAGGAGTTCCTGCTGTATCTGTTTTCTTTAAGAAAGAACAAAGATACCATGGAAAGGTCAAAGCAGTTATCGATTCAGTCCGAGAAGCAGGCATAGAACTGGTTTGATTGGATTCCCTTTTATTAGTCTGCTTGGACAATTTGCTTGCCTCAGTTCTTGCAATGTATAAGATGTCACTTCTGATATTTCCTGTGTTTTGAGGCTTCTATTCCAAGAACAAGGTTCATAACCTCGTCGCCCCCCACACGCTACATATTTTTCGTAGCAAGAGTTGCATGATACTTGTGAATTTTATTCATCATTTGGTTGAAAGTTCATTAAAAGCCTTCAAAA</gDNA_template>
            <first_frame> E  R  H  *  G  *  A  P  P  Q  A  T  S  G  D  R  R  P  A  T  E  I  P  F  S  H  Y  *  R :   N  G  D  S  S  T  S  *  T  R  Q  S  A  E  V  S  Q  T  L  R  A  E  D  A  F  H  K  Q  V  C  K  C  S  S  S  S  H  A  N  S  N  S  G  C  F  C  K  L  T  R  E  R  L  K  A  C  H  G  R  I  K  R  K  Y  *  R  R  C  C  C  S  K  N  R  *  V  V  G  R  A  V  A  G  *  R  S  S  C  C  I  C  F  L  *  E  R  T  K  I  P  W  K  G  Q  S  S  Y  R  F  S  P  R  S  R  H  R  T  G  L  I  G  F  P  F  I  S  L  L  G  Q  F  A  C  L  S  S  C  N  V  *  D  V  T  S  D  I  S  C  V  L  R  L  L  F  Q  E  Q  G  S  *  P  R  R  P  P  H  A  T  Y  F  S  *  Q  E  L  H  D  T  C  E  F  Y  S  S  F  G  *  K  F  I  K  S  L  Q   </first_frame>
            <second_frame>  R  D  T  E  A  E  H  H  H  K  Q  L  A  A  T  G  D  R  R  R  R  F  H  S  L  I  I  K   : E  M  V  I  P  P  P  V  R  P  D  R  V  L  K  Y  L  K  P  Y  V  L  R  M  H  F  T  N  K  Y  V  N  A  Q  V  V  H  T  P  T  A  T  V  A  A  S  A  S  S  Q  E  K  G  L  R  L  A  M  V  E  S  K  E  N  T  R  D  V  A  A  A  A  K  I  G  K  L  L  G  E  R  L  Q  A  K  G  V  P  A  V  S  V  F  F  K  K  E  Q  R  Y  H  G  K  V  K  A  V  I  D  S  V  R  E  A  G  I  E  L  V  *  L  D  S  L  L  L  V  C  L  D  N  L  L  A  S  V  L  A  M  Y  K  M  S  L  L  I  F  P  V  F  *  G  F  Y  S  K  N  K  V  H  N  L  V  A  P  H  T  L  H  I  F  R  S  K  S  C  M  I  L  V  N  F  I  H  H  L  V  E  S  S  L  K  A  F  K  </second_frame>
            <third_frame>   E  T  L  R  L  S  T  T  T  S  N  *  R  R  P  A  T  G  D  G  D  S  I  L  S  L  L  K  :  K  W  *  F  L  H  Q  L  D  Q  T  E  C  *  S  I  S  N  L  T  C  *  G  C  I  S  Q  T  S  M  *  M  L  K  *  F  T  R  Q  Q  Q  Q  W  L  L  L  Q  A  H  K  R  K  A  *  G  L  P  W  *  N  Q  K  K  I  L  E  T  L  L  L  Q  Q  K  *  V  S  C  W  E  S  G  C  R  L  K  E  F  L  L  Y  L  F  S  L  R  K  N  K  D  T  M  E  R  S  K  Q  L  S  I  Q  S  E  K  Q  A  *  N  W  F  D  W  I  P  F  Y  *  S  A  W  T  I  C  L  P  Q  F  L  Q  C  I  R  C  H  F  *  Y  F  L  C  F  E  A  S  I  P  R  T  R  F  I  T  S  S  P  P  T  R  Y  I  F  F  V  A  R  V  A  *  Y  L  *  I  L  F  I  I  W  L  K  V  H  *  K  P  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134375" stop="134459"/>
                    <exon start="137546" stop="137904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDTEAEHHHKQLAATGDRRRRFHSLIIKEMVIPPPVRPDRVLKYLKPYVLRMHFTNKYVNAQVVHTPTATVAASASSQEKGLRLAMVESKENTRDVAAAAKIGKLLGERLQAKGVPAVSVFFKKEQRYHGKVKAVIDSVREAGIELV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="146486" PGL_stop="143411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146486" e_stop="146330"/>
            <exon e_start="145487" e_stop="145431"/>
            <exon e_start="145307" e_stop="145224"/>
            <exon e_start="144821" e_stop="144737"/>
            <exon e_start="144518" e_stop="144457"/>
            <exon e_start="144372" e_stop="144298"/>
            <exon e_start="144200" e_stop="144096"/>
            <exon e_start="143985" e_stop="143844"/>
            <exon e_start="143754" e_stop="143411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.838" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.707" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146486" e_stop="146330" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.838" acc_prob="0.995">
            <gDNA_intron_boundary i_start="146329" i_stop="145488" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145487" e_stop="145431" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.707" acc_prob="0.969">
            <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="145307" e_stop="145224" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144821" e_stop="144737" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144518" e_stop="144457" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.731" acc_prob="0.919">
            <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144372" e_stop="144298" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.915" acc_prob="0.983">
            <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="144200" e_stop="144096" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.641">
            <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="143985" e_stop="143844" e_length="142"/>
          </exon>
          <intron i_serial="8" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="143754" e_stop="143411" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146486" stop="146330"/>
              <exon start="145487" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146419" stop="146330"/>
              <exon start="145487" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146383" stop="146330"/>
              <exon start="145487" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145478" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145476" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145266" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144324" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555408" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCCATGCTGATCCACATCCAGGGAATCTTGCAATTGATGTTGACGAAGCTTTAATCTATTATGATTTTGGTATGATGGGAGACATCAAGAATTTCACAAGAGAGAGGTTGCTGGGACTTTTTTATTCTGTCTACGAAAAGGATGCAAAAAAG : GTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCT : GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG : GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG : GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG : GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT : GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG : TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG : GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGGGTGAGAGAGGAGGTGAAATGTGACCTCTTGCAATATTTAGGAACCATTTTTATTATGTGGTGCAAGCATAGGTACTTGTACCAAAAATTGATTTGGGAAAGGAGATAATCATGTTCCTCATATTTGTAACTATGTTCATATTTTTGTATAGCAATAAAATTTATGCTTCAAATTAAGAAATGCATGTA</gDNA_template>
            <first_frame> F  F  P  C  *  S  T  S  R  E  S  C  N  *  C  *  R  S  F  N  L  L  *  F  W  Y  D  G  R  H  Q  E  F  H  K  R  E  V  A  G  T  F  L  F  C  L  R  K  G  C  K  K   : G  Y  A  R  A  Y  *  S  *  S  T  S  A  H  R  R  H  V  S   : C  E  E  I  C  S  V  F  L  G  Q  L  V  E  P  K  T  R  S  A  A  N  F  G  C  N  W  *   : G  F  V  C  Y  S  N  *  S  T  I  P  F  P  F  H  F  Y  I  C  A  Q  G  I  F  H  T  R  R :   D  W  L  Y  I  G  S  *  F  L  L  P  *  D  C  S  T  I  C  T   : G  A  L  G  L  E  T  A  A  A  Q  W  S  T  T  C  S  G  N  K  E  T  G  *  *   : C  T  D  I  H  H  F  H  A  L  Q  S  P  A  D  R  R  D  R  *  T  A  *  V  R  R  S  E  T  Q  S  S  G  P  R   : V  *  E  S  S  S  K  S  Y  N  S  S  N  G  N  H  V  H  S  H  R  G  H  P  P  K  P  W  C  H  F  Y  Q  S  G  Q  S  N  V  C  K  W  I  F  Y  W  C  R :   C  F  P  D  S  L  D  *  V  H  A  K  S  E  K  T  *  *  I  *  E  N  D  L  S  H  Y  T  F  P  S  P  P  P  F  F  F  L  A  S  F  S  L  F  Y  F  I  L  F  F  C  G  *  E  R  R  *  N  V  T  S  C  N  I  *  E  P  F  L  L  C  G  A  S  I  G  T  C  T  K  N  *  F  G  K  G  D  N  H  V  P  H  I  C  N  Y  V  H  I  F  V  *  Q  *  N  L  C  F  K  L  R  N  A  C  </first_frame>
            <second_frame>  F  F  H  A  D  P  H  P  G  N  L  A  I  D  V  D  E  A  L  I  Y  Y  D  F  G  M  M  G  D  I  K  N  F  T  R  E  R  L  L  G  L  F  Y  S  V  Y  E  K  D  A  K  K  :  V  M  Q  G  L  I  D  L  E  A  L  Q  P  T  G  D  M  S  A  :  V  R  R  S  V  Q  F  F  L  D  N  L  L  N  Q  R  P  D  Q  Q  Q  T  L  A  A  I  G  E  :  D  L  F  A  I  A  T  D  Q  P  F  R  F  P  S  T  F  T  F  V  L  R  A  F  S  T  L  E   : G  I  G  Y  I  L  D  P  N  F  S  F  P  K  I  A  A  P  Y  A  Q  :  E  L  L  D  L  R  Q  Q  Q  R  S  G  P  Q  L  V  Q  E  I  R  K  Q  A  N  D  :  A  R  T  S  T  I  S  M  P  Y  R  V  Q  Q  I  E  E  I  V  K  Q  L  E  S  G  D  L  K  L  R  V  R  V  L  E  :  S  E  R  A  A  R  K  A  T  I  L  Q  M  A  T  M  Y  T  V  I  G  G  T  L  L  N  L  G  V  T  F  T  S  Q  G  S  Q  M  F  A  N  G  S  F  I  G  A   : G  V  F  L  T  L  L  I  R  S  M  Q  R  V  K  K  L  D  K  F  E  K  M  I  *  A  I  I  H  S  L  L  P  H  H  F  F  F  W  L  H  F  H  F  F  I  L  F  Y  F  F  V  G  E  R  G  G  E  M  *  P  L  A  I  F  R  N  H  F  Y  Y  V  V  Q  A  *  V  L  V  P  K  I  D  L  G  K  E  I  I  M  F  L  I  F  V  T  M  F  I  F  L  Y  S  N  K  I  Y  A  S  N  *  E  M  H  V </second_frame>
            <third_frame>   F  S  M  L  I  H  I  Q  G  I  L  Q  L  M  L  T  K  L  *  S  I  M  I  L  V  *  W  E  T  S  R  I  S  Q  E  R  G  C  W  D  F  F  I  L  S  T  K  R  M  Q  K  R :   L  C  K  G  L  L  I  L  K  H  F  S  P  Q  E  T  C  Q  L :   *  G  D  L  F  S  F  S  W  T  T  C  *  T  K  D  Q  I  S  S  K  L  W  L  Q  L  V  R :   I  C  L  L  *  Q  L  I  N  H  S  V  S  L  P  L  L  H  L  C  S  G  H  F  P  H  *  K  :  G  L  A  I  Y  W  I  L  I  S  P  S  L  R  L  Q  H  H  M  H  R :   S  S  W  T  *  D  S  S  S  A  V  V  H  N  L  F  R  K  *  G  N  R  L  M  M :   H  G  H  P  P  F  P  C  L  T  E  S  S  R  *  K  R  S  L  N  S  L  S  P  E  I  *  N  S  E  F  G  S  S  S :   L  R  E  Q  L  E  K  L  Q  F  F  K  W  Q  P  C  T  Q  S  *  G  A  P  S  *  T  L  V  S  L  L  P  V  R  A  V  K  C  L  Q  M  D  L  L  L  V  Q  :  V  F  S  *  L  S  *  L  G  P  C  K  E  *  K  N  L  I  N  L  R  K  *  F  K  P  L  Y  I  P  F  S  P  T  I  F  F  F  G  F  I  F  T  F  L  F  Y  F  I  F  L  W  V  R  E  E  V  K  C  D  L  L  Q  Y  L  G  T  I  F  I  M  W  C  K  H  R  Y  L  Y  Q  K  L  I  W  E  R  R  *  S  C  S  S  Y  L  *  L  C  S  Y  F  C  I  A  I  K  F  M  L  Q  I  K  K  C  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146485" stop="146330"/>
                    <exon start="145487" stop="145431"/>
                    <exon start="145307" stop="145224"/>
                    <exon start="144821" stop="144737"/>
                    <exon start="144518" stop="144457"/>
                    <exon start="144372" stop="144298"/>
                    <exon start="144200" stop="144096"/>
                    <exon start="143985" stop="143844"/>
                    <exon start="143754" stop="143681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHADPHPGNLAIDVDEALIYYDFGMMGDIKNFTRERLLGLFYSVYEKDAKKVMQGLIDLEALQPTGDMSAVRRSVQFFLDNLLNQRPDQQQTLAAIGEDLFAIATDQPFRFPSTFTFVLRAFSTLEGIGYILDPNFSFPKIAAPYAQELLDLRQQQRSGPQLVQEIRKQANDARTSTISMPYRVQQIEEIVKQLESGDLKLRVRVLESERAARKATILQMATMYTVIGGTLLNLGVTFTSQGSQMFANGSFIGAGVFLTLLIRSMQRVKKLDKFEKMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143685" stop="143491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKPLYIPFSPTIFFFGFIFTFLFYFIFLWVREEVKCDLLQYLGTIFIMWCKHRYLYQKLIWERR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="145882" e_stop="145431"/>
            <exon e_start="145307" e_stop="145224"/>
            <exon e_start="144821" e_stop="144737"/>
            <exon e_start="144518" e_stop="144457"/>
            <exon e_start="144372" e_stop="144298"/>
            <exon e_start="144200" e_stop="144096"/>
            <exon e_start="143985" e_stop="143844"/>
            <exon e_start="143754" e_stop="143411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.707" acc_prob="0.969" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="145882" e_stop="145431" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.707" acc_prob="0.969">
            <gDNA_intron_boundary i_start="145430" i_stop="145308" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="145307" e_stop="145224" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144821" e_stop="144737" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144518" e_stop="144457" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.731" acc_prob="0.919">
            <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144372" e_stop="144298" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.915" acc_prob="0.983">
            <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="144200" e_stop="144096" e_length="105"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.641">
            <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="143985" e_stop="143844" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="143754" e_stop="143411" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145882" stop="145461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145478" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145476" stop="145431"/>
              <exon start="145307" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145266" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144324" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555408" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCT : GTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG : GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG : GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG : GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT : GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG : TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG : GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGGGTGAGAGAGGAGGTGAAATGTGACCTCTTGCAATATTTAGGAACCATTTTTATTATGTGGTGCAAGCATAGGTACTTGTACCAAAAATTGATTTGGGAAAGGAGATAATCATGTTCCTCATATTTGTAACTATGTTCATATTTTTGTATAGCAATAAAATTTATGCTTCAAATTAAGAAATGCATGTA</gDNA_template>
            <first_frame> N  A  R  E  I  H  K  V  V  V  F  R  V  S  C  A  V  K  D  D  I  E  V  I  R  C  I  R  L  T  L  A  S  Y  F  Q  L  L  T  L  L  E  S  K  S  Y  K  T  I  N  L  F  P  H  A  P  L  A  F  T  T  C  H  L  P  Q  S  K  T  N  I  D  C  K  F  P  F  H  L  L  S  L  L  R  H  L  K  L  R  R  N  N  *  I  H  L  F  V  S  G  G  Q  K  H  Y  C  A  L  H  *  N  I  L  E  *  R  E  L  I  L  C  I  L  I  R  E  I  L  C  V  H  R  L  C  K  G  L  L  I  L  K  H  F  S  P  Q  E  T  C  Q  L :   *  G  D  L  F  S  F  S  W  T  T  C  *  T  K  D  Q  I  S  S  K  L  W  L  Q  L  V  R :   I  C  L  L  *  Q  L  I  N  H  S  V  S  L  P  L  L  H  L  C  S  G  H  F  P  H  *  K  :  G  L  A  I  Y  W  I  L  I  S  P  S  L  R  L  Q  H  H  M  H  R :   S  S  W  T  *  D  S  S  S  A  V  V  H  N  L  F  R  K  *  G  N  R  L  M  M :   H  G  H  P  P  F  P  C  L  T  E  S  S  R  *  K  R  S  L  N  S  L  S  P  E  I  *  N  S  E  F  G  S  S  S :   L  R  E  Q  L  E  K  L  Q  F  F  K  W  Q  P  C  T  Q  S  *  G  A  P  S  *  T  L  V  S  L  L  P  V  R  A  V  K  C  L  Q  M  D  L  L  L  V  Q  :  V  F  S  *  L  S  *  L  G  P  C  K  E  *  K  N  L  I  N  L  R  K  *  F  K  P  L  Y  I  P  F  S  P  T  I  F  F  F  G  F  I  F  T  F  L  F  Y  F  I  F  L  W  V  R  E  E  V  K  C  D  L  L  Q  Y  L  G  T  I  F  I  M  W  C  K  H  R  Y  L  Y  Q  K  L  I  W  E  R  R  *  S  C  S  S  Y  L  *  L  C  S  Y  F  C  I  A  I  K  F  M  L  Q  I  K  K  C  M   </first_frame>
            <second_frame>  M  Q  E  R  F  I  K  L  L  Y  L  G  *  V  V  Q  *  R  M  I  *  K  *  L  D  V  F  D  L  L  *  L  V  T  F  S  F  *  L  S  W  R  A  N  L  I  R  Q  S  T  F  F  L  M  L  H  L  H  L  P  P  V  T  C  L  K  A  R  Q  I  L  I  V  N  S  P  S  T  C  Y  H  C  C  G  I  *  N  S  E  E  T  I  E  S  I  S  L  Y  L  V  A  R  S  I  I  V  L  C  I  K  I  F  W  S  R  E  S  *  F  C  V  Y  *  *  E  K  Y  Y  V  Y  T  G  Y  A  R  A  Y  *  S  *  S  T  S  A  H  R  R  H  V  S   : C  E  E  I  C  S  V  F  L  G  Q  L  V  E  P  K  T  R  S  A  A  N  F  G  C  N  W  *   : G  F  V  C  Y  S  N  *  S  T  I  P  F  P  F  H  F  Y  I  C  A  Q  G  I  F  H  T  R  R :   D  W  L  Y  I  G  S  *  F  L  L  P  *  D  C  S  T  I  C  T   : G  A  L  G  L  E  T  A  A  A  Q  W  S  T  T  C  S  G  N  K  E  T  G  *  *   : C  T  D  I  H  H  F  H  A  L  Q  S  P  A  D  R  R  D  R  *  T  A  *  V  R  R  S  E  T  Q  S  S  G  P  R   : V  *  E  S  S  S  K  S  Y  N  S  S  N  G  N  H  V  H  S  H  R  G  H  P  P  K  P  W  C  H  F  Y  Q  S  G  Q  S  N  V  C  K  W  I  F  Y  W  C  R :   C  F  P  D  S  L  D  *  V  H  A  K  S  E  K  T  *  *  I  *  E  N  D  L  S  H  Y  T  F  P  S  P  P  P  F  F  F  L  A  S  F  S  L  F  Y  F  I  L  F  F  C  G  *  E  R  R  *  N  V  T  S  C  N  I  *  E  P  F  L  L  C  G  A  S  I  G  T  C  T  K  N  *  F  G  K  G  D  N  H  V  P  H  I  C  N  Y  V  H  I  F  V  *  Q  *  N  L  C  F  K  L  R  N  A  C  </second_frame>
            <third_frame>   C  K  R  D  S  *  S  C  C  I  *  G  K  L  C  S  E  G  *  Y  R  S  D  *  M  Y  S  T  Y  S  S  *  L  L  S  A  F  D  S  L  G  E  Q  I  L  *  D  N  Q  P  F  S  S  C  S  T  C  I  Y  H  L  S  P  A  S  K  Q  D  K  Y  *  L  *  I  P  L  P  L  V  I  I  V  A  A  F  K  T  Q  K  K  Q  L  N  P  S  L  C  I  W  W  P  E  A  L  L  C  F  A  L  K  Y  F  G  V  E  R  A  N  S  V  Y  I  N  K  R  N  I  M  C  T  Q  V  M  Q  G  L  I  D  L  E  A  L  Q  P  T  G  D  M  S  A  :  V  R  R  S  V  Q  F  F  L  D  N  L  L  N  Q  R  P  D  Q  Q  Q  T  L  A  A  I  G  E  :  D  L  F  A  I  A  T  D  Q  P  F  R  F  P  S  T  F  T  F  V  L  R  A  F  S  T  L  E   : G  I  G  Y  I  L  D  P  N  F  S  F  P  K  I  A  A  P  Y  A  Q  :  E  L  L  D  L  R  Q  Q  Q  R  S  G  P  Q  L  V  Q  E  I  R  K  Q  A  N  D  :  A  R  T  S  T  I  S  M  P  Y  R  V  Q  Q  I  E  E  I  V  K  Q  L  E  S  G  D  L  K  L  R  V  R  V  L  E  :  S  E  R  A  A  R  K  A  T  I  L  Q  M  A  T  M  Y  T  V  I  G  G  T  L  L  N  L  G  V  T  F  T  S  Q  G  S  Q  M  F  A  N  G  S  F  I  G  A   : G  V  F  L  T  L  L  I  R  S  M  Q  R  V  K  K  L  D  K  F  E  K  M  I  *  A  I  I  H  S  L  L  P  H  H  F  F  F  W  L  H  F  H  F  F  I  L  F  Y  F  F  V  G  E  R  G  G  E  M  *  P  L  A  I  F  R  N  H  F  Y  Y  V  V  Q  A  *  V  L  V  P  K  I  D  L  G  K  E  I  I  M  F  L  I  F  V  T  M  F  I  F  L  Y  S  N  K  I  Y  A  S  N  *  E  M  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145661" stop="145431"/>
                    <exon start="145307" stop="145224"/>
                    <exon start="144821" stop="144737"/>
                    <exon start="144518" stop="144457"/>
                    <exon start="144372" stop="144298"/>
                    <exon start="144200" stop="144096"/>
                    <exon start="143985" stop="143844"/>
                    <exon start="143754" stop="143681"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPLPLVIIVAAFKTQKKQLNPSLCIWWPEALLCFALKYFGVERANSVYINKRNIMCTQVMQGLIDLEALQPTGDMSAVRRSVQFFLDNLLNQRPDQQQTLAAIGEDLFAIATDQPFRFPSTFTFVLRAFSTLEGIGYILDPNFSFPKIAAPYAQELLDLRQQQRSGPQLVQEIRKQANDARTSTISMPYRVQQIEEIVKQLESGDLKLRVRVLESERAARKATILQMATMYTVIGGTLLNLGVTFTSQGSQMFANGSFIGAGVFLTLLIRSMQRVKKLDKFEKMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143685" stop="143491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKPLYIPFSPTIFFFGFIFTFLFYFIFLWVREEVKCDLLQYLGTIFIMWCKHRYLYQKLIWERR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="145882" e_stop="145224"/>
            <exon e_start="144821" e_stop="144737"/>
            <exon e_start="144518" e_stop="144457"/>
            <exon e_start="144372" e_stop="144298"/>
            <exon e_start="144200" e_stop="144096"/>
            <exon e_start="143985" e_stop="143844"/>
            <exon e_start="143754" e_stop="143411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.977" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.731" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.641" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="145882" e_stop="145224" e_length="659"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="145223" i_stop="144822" i_length="402"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="144821" e_stop="144737" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.986">
            <gDNA_intron_boundary i_start="144736" i_stop="144519" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144518" e_stop="144457" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.731" acc_prob="0.919">
            <gDNA_intron_boundary i_start="144456" i_stop="144373" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="144372" e_stop="144298" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.983">
            <gDNA_intron_boundary i_start="144297" i_stop="144201" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="144200" e_stop="144096" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.641">
            <gDNA_intron_boundary i_start="144095" i_stop="143986" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="143985" e_stop="143844" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="143843" i_stop="143755" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="143754" e_stop="143411" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145882" stop="145461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145878" stop="145237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="145266" stop="145224"/>
              <exon start="144821" stop="144737"/>
              <exon start="144518" stop="144457"/>
              <exon start="144372" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144324" stop="144298"/>
              <exon start="144200" stop="144096"/>
              <exon start="143985" stop="143844"/>
              <exon start="143754" stop="143411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555408" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCAAGAGAGATTCATAAAGTTGTTGTATTTAGGGTAAGTTGTGCAGTGAAGGATGATATAGAAGTGATTAGATGTATTCGACTTACTCTAGCTAGTTACTTTCAGCTTTTGACTCTCTTGGAGAGCAAATCTTATAAGACAATCAACCTTTTTCCTCATGCTCCACTTGCATTTACCACCTGTCACCTGCCTCAAAGCAAGACAAATATTGATTGTAAATTCCCCTTCCACTTGTTATCATTGTTGCGGCATTTAAAACTCAGAAGAAACAATTGAATCCATCTCTTTGTATCTGGTGGCCAGAAGCATTATTGTGCTTTGCATTAAAATATTTTGGAGTAGAGAGAGCTAATTCTGTGTATATTAATAAGAGAAATATTATGTGTACACAGGTTATGCAAGGGCTTATTGATCTTGAAGCACTTCAGCCCACAGGAGACATGTCAGCTGTATGTTACATACCCTGACCTCAAAACCCTGCAAAGAAAAGGAAGAAAATCACTAATGAATTTAAGGCCTTATCTAAGAGTAGCTATCTATTGAAACTCCTAATAACCTTTTGTTCTTCTTAGGTGAGGAGATCTGTTCAGTTTTTCTTGGACAACTTGTTGAACCAAAGACCAGATCAGCAGCAAACTTTGGCTGCAATTGGTGAG : GATTTGTTTGCTATAGCAACTGATCAACCATTCCGTTTCCCTTCCACTTTTACATTTGTGCTCAGGGCATTTTCCACACTAGAAG : GGATTGGCTATATATTGGATCCTAATTTCTCCTTCCCTAAGATTGCAGCACCATATGCACAG : GAGCTCTTGGACTTGAGACAGCAGCAGCGCAGTGGTCCACAACTTGTTCAGGAAATAAGGAAACAGGCTAATGAT : GCACGGACATCCACCATTTCCATGCCTTACAGAGTCCAGCAGATAGAAGAGATCGTTAAACAGCTTGAGTCCGGAGATCTGAAACTCAGAGTTCGGGTCCTCGAG : TCTGAGAGAGCAGCTCGAAAAGCTACAATTCTTCAAATGGCAACCATGTACACAGTCATAGGGGGCACCCTCCTAAACCTTGGTGTCACTTTTACCAGTCAGGGCAGTCAAATGTTTGCAAATGGATCTTTTATTGGTGCAG : GTGTTTTCCTGACTCTCTTGATTAGGTCCATGCAAAGAGTGAAAAAACTTGATAAATTTGAGAAAATGATTTAAGCCATTATACATTCCCTTCTCCCCCACCATTTTTTTTTTTGGCTTCATTTTCACTTTTTTATTTTATTTTATTTTTTTGTGGGTGAGAGAGGAGGTGAAATGTGACCTCTTGCAATATTTAGGAACCATTTTTATTATGTGGTGCAAGCATAGGTACTTGTACCAAAAATTGATTTGGGAAAGGAGATAATCATGTTCCTCATATTTGTAACTATGTTCATATTTTTGTATAGCAATAAAATTTATGCTTCAAATTAAGAAATGCATGTA</gDNA_template>
            <first_frame> N  A  R  E  I  H  K  V  V  V  F  R  V  S  C  A  V  K  D  D  I  E  V  I  R  C  I  R  L  T  L  A  S  Y  F  Q  L  L  T  L  L  E  S  K  S  Y  K  T  I  N  L  F  P  H  A  P  L  A  F  T  T  C  H  L  P  Q  S  K  T  N  I  D  C  K  F  P  F  H  L  L  S  L  L  R  H  L  K  L  R  R  N  N  *  I  H  L  F  V  S  G  G  Q  K  H  Y  C  A  L  H  *  N  I  L  E  *  R  E  L  I  L  C  I  L  I  R  E  I  L  C  V  H  R  L  C  K  G  L  L  I  L  K  H  F  S  P  Q  E  T  C  Q  L  Y  V  T  Y  P  D  L  K  T  L  Q  R  K  G  R  K  S  L  M  N  L  R  P  Y  L  R  V  A  I  Y  *  N  S  *  *  P  F  V  L  L  R  *  G  D  L  F  S  F  S  W  T  T  C  *  T  K  D  Q  I  S  S  K  L  W  L  Q  L  V  R :   I  C  L  L  *  Q  L  I  N  H  S  V  S  L  P  L  L  H  L  C  S  G  H  F  P  H  *  K  :  G  L  A  I  Y  W  I  L  I  S  P  S  L  R  L  Q  H  H  M  H  R :   S  S  W  T  *  D  S  S  S  A  V  V  H  N  L  F  R  K  *  G  N  R  L  M  M :   H  G  H  P  P  F  P  C  L  T  E  S  S  R  *  K  R  S  L  N  S  L  S  P  E  I  *  N  S  E  F  G  S  S  S :   L  R  E  Q  L  E  K  L  Q  F  F  K  W  Q  P  C  T  Q  S  *  G  A  P  S  *  T  L  V  S  L  L  P  V  R  A  V  K  C  L  Q  M  D  L  L  L  V  Q  :  V  F  S  *  L  S  *  L  G  P  C  K  E  *  K  N  L  I  N  L  R  K  *  F  K  P  L  Y  I  P  F  S  P  T  I  F  F  F  G  F  I  F  T  F  L  F  Y  F  I  F  L  W  V  R  E  E  V  K  C  D  L  L  Q  Y  L  G  T  I  F  I  M  W  C  K  H  R  Y  L  Y  Q  K  L  I  W  E  R  R  *  S  C  S  S  Y  L  *  L  C  S  Y  F  C  I  A  I  K  F  M  L  Q  I  K  K  C  M   </first_frame>
            <second_frame>  M  Q  E  R  F  I  K  L  L  Y  L  G  *  V  V  Q  *  R  M  I  *  K  *  L  D  V  F  D  L  L  *  L  V  T  F  S  F  *  L  S  W  R  A  N  L  I  R  Q  S  T  F  F  L  M  L  H  L  H  L  P  P  V  T  C  L  K  A  R  Q  I  L  I  V  N  S  P  S  T  C  Y  H  C  C  G  I  *  N  S  E  E  T  I  E  S  I  S  L  Y  L  V  A  R  S  I  I  V  L  C  I  K  I  F  W  S  R  E  S  *  F  C  V  Y  *  *  E  K  Y  Y  V  Y  T  G  Y  A  R  A  Y  *  S  *  S  T  S  A  H  R  R  H  V  S  C  M  L  H  T  L  T  S  K  P  C  K  E  K  E  E  N  H  *  *  I  *  G  L  I  *  E  *  L  S  I  E  T  P  N  N  L  L  F  F  L  G  E  E  I  C  S  V  F  L  G  Q  L  V  E  P  K  T  R  S  A  A  N  F  G  C  N  W  *   : G  F  V  C  Y  S  N  *  S  T  I  P  F  P  F  H  F  Y  I  C  A  Q  G  I  F  H  T  R  R :   D  W  L  Y  I  G  S  *  F  L  L  P  *  D  C  S  T  I  C  T   : G  A  L  G  L  E  T  A  A  A  Q  W  S  T  T  C  S  G  N  K  E  T  G  *  *   : C  T  D  I  H  H  F  H  A  L  Q  S  P  A  D  R  R  D  R  *  T  A  *  V  R  R  S  E  T  Q  S  S  G  P  R   : V  *  E  S  S  S  K  S  Y  N  S  S  N  G  N  H  V  H  S  H  R  G  H  P  P  K  P  W  C  H  F  Y  Q  S  G  Q  S  N  V  C  K  W  I  F  Y  W  C  R :   C  F  P  D  S  L  D  *  V  H  A  K  S  E  K  T  *  *  I  *  E  N  D  L  S  H  Y  T  F  P  S  P  P  P  F  F  F  L  A  S  F  S  L  F  Y  F  I  L  F  F  C  G  *  E  R  R  *  N  V  T  S  C  N  I  *  E  P  F  L  L  C  G  A  S  I  G  T  C  T  K  N  *  F  G  K  G  D  N  H  V  P  H  I  C  N  Y  V  H  I  F  V  *  Q  *  N  L  C  F  K  L  R  N  A  C  </second_frame>
            <third_frame>   C  K  R  D  S  *  S  C  C  I  *  G  K  L  C  S  E  G  *  Y  R  S  D  *  M  Y  S  T  Y  S  S  *  L  L  S  A  F  D  S  L  G  E  Q  I  L  *  D  N  Q  P  F  S  S  C  S  T  C  I  Y  H  L  S  P  A  S  K  Q  D  K  Y  *  L  *  I  P  L  P  L  V  I  I  V  A  A  F  K  T  Q  K  K  Q  L  N  P  S  L  C  I  W  W  P  E  A  L  L  C  F  A  L  K  Y  F  G  V  E  R  A  N  S  V  Y  I  N  K  R  N  I  M  C  T  Q  V  M  Q  G  L  I  D  L  E  A  L  Q  P  T  G  D  M  S  A  V  C  Y  I  P  *  P  Q  N  P  A  K  K  R  K  K  I  T  N  E  F  K  A  L  S  K  S  S  Y  L  L  K  L  L  I  T  F  C  S  S  *  V  R  R  S  V  Q  F  F  L  D  N  L  L  N  Q  R  P  D  Q  Q  Q  T  L  A  A  I  G  E  :  D  L  F  A  I  A  T  D  Q  P  F  R  F  P  S  T  F  T  F  V  L  R  A  F  S  T  L  E   : G  I  G  Y  I  L  D  P  N  F  S  F  P  K  I  A  A  P  Y  A  Q  :  E  L  L  D  L  R  Q  Q  Q  R  S  G  P  Q  L  V  Q  E  I  R  K  Q  A  N  D  :  A  R  T  S  T  I  S  M  P  Y  R  V  Q  Q  I  E  E  I  V  K  Q  L  E  S  G  D  L  K  L  R  V  R  V  L  E  :  S  E  R  A  A  R  K  A  T  I  L  Q  M  A  T  M  Y  T  V  I  G  G  T  L  L  N  L  G  V  T  F  T  S  Q  G  S  Q  M  F  A  N  G  S  F  I  G  A   : G  V  F  L  T  L  L  I  R  S  M  Q  R  V  K  K  L  D  K  F  E  K  M  I  *  A  I  I  H  S  L  L  P  H  H  F  F  F  W  L  H  F  H  F  F  I  L  F  Y  F  F  V  G  E  R  G  G  E  M  *  P  L  A  I  F  R  N  H  F  Y  Y  V  V  Q  A  *  V  L  V  P  K  I  D  L  G  K  E  I  I  M  F  L  I  F  V  T  M  F  I  F  L  Y  S  N  K  I  Y  A  S  N  *  E  M  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145307" stop="145224"/>
                    <exon start="144821" stop="144737"/>
                    <exon start="144518" stop="144457"/>
                    <exon start="144372" stop="144298"/>
                    <exon start="144200" stop="144096"/>
                    <exon start="143985" stop="143844"/>
                    <exon start="143754" stop="143681"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRRSVQFFLDNLLNQRPDQQQTLAAIGEDLFAIATDQPFRFPSTFTFVLRAFSTLEGIGYILDPNFSFPKIAAPYAQELLDLRQQQRSGPQLVQEIRKQANDARTSTISMPYRVQQIEEIVKQLESGDLKLRVRVLESERAARKATILQMATMYTVIGGTLLNLGVTFTSQGSQMFANGSFIGAGVFLTLLIRSMQRVKKLDKFEKMI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145882" stop="145604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAREIHKVVVFRVSCAVKDDIEVIRCIRLTLASYFQLLTLLESKSYKTINLFPHAPLAFTTCHLPQSKTNIDCKFPFHLLSLLRHLKLRRNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145537" stop="145337"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RELILCILIREILCVHRLCKGLLILKHFSPQETCQLYVTYPDLKTLQRKGRKSLMNLRPYLRVAIY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143685" stop="143491"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKPLYIPFSPTIFFFGFIFTFLFYFIFLWVREEVKCDLLQYLGTIFIMWCKHRYLYQKLIWERR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="144512" PGL_stop="145237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="144512" e_stop="145237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="144512" e_stop="145237" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144512" stop="145237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144512" stop="145237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144513" stop="145035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226980" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATCCCTGCAAGAATGCAACAGGAGATGGAAACATTCAGTTCCGTGATCTGTAAGTGGATTTAACATCTAGCCACAAAAATGCGAACTGACAAAAAGGGAAATAATCTCAAGAGTCTAGACTGTTTAAAGTCAAGGATCTTAACAATTATATTTAACTAATGGATGTTGCCTTGCTTTTCAGAATGAGAGAGAGGGGGAGGGAAAAAGAGAGAGAGATCGCACCTTCTAGTGTGGAAAATGCCCTGAGCACAAATGTAAAAGTGGAAGGGAAACGGAATGGTTGATCAGTTGCTATAGCAAACAAATCCTGCATTGTCTTCCTCTTGTTACATTGTGAAACACGCAAAGATAGTTTGAAGTGAAACTAACTTTCTACTTCTTGAAATTATAGTATTGTAACTACAGTGCAATTCCATACACATTTGATTTTAAAAAATGGAATATGTCAGTCTAATTTCCGAAATCAATTTCAAAATTGTGATAGACTTCCCAAAAGATAGGATCTTGGCAAGGTGAGTTTCAAGAAAACATGGCAGCAATGAGAAACTACAGCCAATCTTCATAAATGCCTCTTTAAACGAGTGGATCATACAAATATTTGAACCAAATATAGTCCATCGTATATTTATTATCTTCAATATACTAAAGGATACCAAAATTCTAATAAATTTGGCTATTATTTTTATAGAAAGTTGCAAATTCTGCATACCTCACCAATTGCAG</gDNA_template>
            <first_frame> P  I  P  A  R  M  Q  Q  E  M  E  T  F  S  S  V  I  C  K  W  I  *  H  L  A  T  K  M  R  T  D  K  K  G  N  N  L  K  S  L  D  C  L  K  S  R  I  L  T  I  I  F  N  *  W  M  L  P  C  F  S  E  *  E  R  G  G  G  K  K  R  E  R  S  H  L  L  V  W  K  M  P  *  A  Q  M  *  K  W  K  G  N  G  M  V  D  Q  L  L  *  Q  T  N  P  A  L  S  S  S  C  Y  I  V  K  H  A  K  I  V  *  S  E  T  N  F  L  L  L  E  I  I  V  L  *  L  Q  C  N  S  I  H  I  *  F  *  K  M  E  Y  V  S  L  I  S  E  I  N  F  K  I  V  I  D  F  P  K  D  R  I  L  A  R  *  V  S  R  K  H  G  S  N  E  K  L  Q  P  I  F  I  N  A  S  L  N  E  W  I  I  Q  I  F  E  P  N  I  V  H  R  I  F  I  I  F  N  I  L  K  D  T  K  I  L  I  N  L  A  I  I  F  I  E  S  C  K  F  C  I  P  H  Q  L  Q </first_frame>
            <second_frame>  Q  S  L  Q  E  C  N  R  R  W  K  H  S  V  P  *  S  V  S  G  F  N  I  *  P  Q  K  C  E  L  T  K  R  E  I  I  S  R  V  *  T  V  *  S  Q  G  S  *  Q  L  Y  L  T  N  G  C  C  L  A  F  Q  N  E  R  E  G  E  G  K  R  E  R  D  R  T  F  *  C  G  K  C  P  E  H  K  C  K  S  G  R  E  T  E  W  L  I  S  C  Y  S  K  Q  I  L  H  C  L  P  L  V  T  L  *  N  T  Q  R  *  F  E  V  K  L  T  F  Y  F  L  K  L  *  Y  C  N  Y  S  A  I  P  Y  T  F  D  F  K  K  W  N  M  S  V  *  F  P  K  S  I  S  K  L  *  *  T  S  Q  K  I  G  S  W  Q  G  E  F  Q  E  N  M  A  A  M  R  N  Y  S  Q  S  S  *  M  P  L  *  T  S  G  S  Y  K  Y  L  N  Q  I  *  S  I  V  Y  L  L  S  S  I  Y  *  R  I  P  K  F  *  *  I  W  L  L  F  L  *  K  V  A  N  S  A  Y  L  T  N  C   </second_frame>
            <third_frame>   N  P  C  K  N  A  T  G  D  G  N  I  Q  F  R  D  L  *  V  D  L  T  S  S  H  K  N  A  N  *  Q  K  G  K  *  S  Q  E  S  R  L  F  K  V  K  D  L  N  N  Y  I  *  L  M  D  V  A  L  L  F  R  M  R  E  R  G  R  E  K  E  R  E  I  A  P  S  S  V  E  N  A  L  S  T  N  V  K  V  E  G  K  R  N  G  *  S  V  A  I  A  N  K  S  C  I  V  F  L  L  L  H  C  E  T  R  K  D  S  L  K  *  N  *  L  S  T  S  *  N  Y  S  I  V  T  T  V  Q  F  H  T  H  L  I  L  K  N  G  I  C  Q  S  N  F  R  N  Q  F  Q  N  C  D  R  L  P  K  R  *  D  L  G  K  V  S  F  K  K  T  W  Q  Q  *  E  T  T  A  N  L  H  K  C  L  F  K  R  V  D  H  T  N  I  *  T  K  Y  S  P  S  Y  I  Y  Y  L  Q  Y  T  K  G  Y  Q  N  S  N  K  F  G  Y  Y  F  Y  R  K  L  Q  I  L  H  T  S  P  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="145031" stop="145237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRKHGSNEKLQPIFINASLNEWIIQIFEPNIVHRIFIIFNILKDTKILINLAIIFIESCKFCIPHQLQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="151863" PGL_stop="149293"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151863" e_stop="151573"/>
            <exon e_start="150767" e_stop="150193"/>
            <exon e_start="150030" e_stop="149887"/>
            <exon e_start="149749" e_stop="149624"/>
            <exon e_start="149380" e_stop="149293"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.603" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="151863" e_stop="151573" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="151572" i_stop="150768" i_length="805"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150767" e_stop="150193" e_length="575"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.603">
            <gDNA_intron_boundary i_start="150192" i_stop="150031" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="150030" e_stop="149887" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="149886" i_stop="149750" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="149749" e_stop="149624" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="149623" i_stop="149381" i_length="243"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="149380" e_stop="149293" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151863" stop="151573"/>
              <exon start="150767" stop="150299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151795" stop="151573"/>
              <exon start="150767" stop="150553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150767" stop="150193"/>
              <exon start="150030" stop="149887"/>
              <exon start="149749" stop="149661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150458" stop="150193"/>
              <exon start="150030" stop="149911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150457" stop="150193"/>
              <exon start="150030" stop="149887"/>
              <exon start="149749" stop="149624"/>
              <exon start="149380" stop="149293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150416" stop="150193"/>
              <exon start="150030" stop="149887"/>
              <exon start="149749" stop="149645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTAGTACTACTAAAGAATTTTCATAAGAAGGAAAGAAAAATTGGAACTTTATGATATTGAATTAGTTAACTGAAAAGAAACAGAAATATAATAGTGAGTTGCCAAGAGTGCACGCCAAGTGTTTGTTCATTTTACACCTTTCTTTAAAGCAATAGAAGAGCAAATTAAGTGACCTACCAATTTGTTTGTGGTCCACAAGAATTTGGTTAAAGATTGATTCACAATTTAAAGAGAGTTCTGGTTTTGATTCTTGTTGTTGTGCTAAGCTTCTTCTTCTTGCTGCTCATT : GATATATACCATAAATGGCGGCAATGTTGGCTTCTCAAAGCTGTTATTGCCGCAGAGGAGAACTGATAAATCATGGAAGCAATGCAAACAATCTAAGTTTTTCAGGCTCAATCTCTATCCTATTTTTGTCGAAATTTGATAGAGAATCTGGTAAATCACCTAGAAAGAGTCACCGGCTTAAAGTGCAAATGCAACAGACAGAGTCCCCTGAAAAAGTAGGTATAAATGGTCGTCCAGTTAAAATGGTACCTACAAGTGAAGTGACAAAGAGAATTGCACCATCTGCTAATGGTTCCACGGTTGTTAATGGTTCCACACAGAGAATCAATGGAACAAATCTAGCTAAGCGTGTTGCTACTCCACTTCCTGCAAAGAAACAAAAATCTAAAGAACTTCTGCCTGCTGAAGATCTAAAGGTTTTACCTTCAGATGAAGGTTTCAGCTGGGCTAATGAGAACTATAATTCCATCCAAAGAAGTATAGATGTGTGGTCCTTTGTCCTTTCGCTGCGGGTGCGTGTTTTCTTGGACAATGCGAAATGGACATATGTGGGTGGCTTTACTGAAGATAAACAG : AAAGTGAGAAGACGTGGAACAGCTTCATGGTTAAGAGAATGTGTGCTGCAGCTTGGCCCAACATTTATCAAACTTGGGCAGTTATCCTCTACTAGATCTGATCTATTTCCTCGAGAATTTGTAGATGAGCTTGCTAAGTTGCAG : GACAGAGTACCAGCCTTCTCCCCCGAGAGAGCAAAAGAGTTTATTAAAAAGGAGCTGGGAATTCCAGTTGATATTTTGTATAAGGAGTTTGAAGATCAACCCATTGCAGCAGCTAGTCTTGGTCAG : GTGCACCGGGCTATCTTACACAGTGGAGAGAAAGTTGTTGTAAAAGTTCAGAGACCCGGCCTAAAGAAACTATTTGACATTGATCTGA</gDNA_template>
            <first_frame> I  L  V  L  L  K  N  F  H  K  K  E  R  K  I  G  T  L  *  Y  *  I  S  *  L  K  R  N  R  N  I  I  V  S  C  Q  E  C  T  P  S  V  C  S  F  Y  T  F  L  *  S  N  R  R  A  N  *  V  T  Y  Q  F  V  C  G  P  Q  E  F  G  *  R  L  I  H  N  L  K  R  V  L  V  L  I  L  V  V  V  L  S  F  F  F  L  L  L  I  :  D  I  Y  H  K  W  R  Q  C  W  L  L  K  A  V  I  A  A  E  E  N  *  *  I  M  E  A  M  Q  T  I  *  V  F  Q  A  Q  S  L  S  Y  F  C  R  N  L  I  E  N  L  V  N  H  L  E  R  V  T  G  L  K  C  K  C  N  R  Q  S  P  L  K  K  *  V  *  M  V  V  Q  L  K  W  Y  L  Q  V  K  *  Q  R  E  L  H  H  L  L  M  V  P  R  L  L  M  V  P  H  R  E  S  M  E  Q  I  *  L  S  V  L  L  L  H  F  L  Q  R  N  K  N  L  K  N  F  C  L  L  K  I  *  R  F  Y  L  Q  M  K  V  S  A  G  L  M  R  T  I  I  P  S  K  E  V  *  M  C  G  P  L  S  F  R  C  G  C  V  F  S  W  T  M  R  N  G  H  M  W  V  A  L  L  K  I  N  R :   K  *  E  D  V  E  Q  L  H  G  *  E  N  V  C  C  S  L  A  Q  H  L  S  N  L  G  S  Y  P  L  L  D  L  I  Y  F  L  E  N  L  *  M  S  L  L  S  C  R :   T  E  Y  Q  P  S  P  P  R  E  Q  K  S  L  L  K  R  S  W  E  F  Q  L  I  F  C  I  R  S  L  K  I  N  P  L  Q  Q  L  V  L  V  R :   C  T  G  L  S  Y  T  V  E  R  K  L  L  *  K  F  R  D  P  A  *  R  N  Y  L  T  L  I  * </first_frame>
            <second_frame>  S  *  Y  Y  *  R  I  F  I  R  R  K  E  K  L  E  L  Y  D  I  E  L  V  N  *  K  E  T  E  I  *  *  *  V  A  K  S  A  R  Q  V  F  V  H  F  T  P  F  F  K  A  I  E  E  Q  I  K  *  P  T  N  L  F  V  V  H  K  N  L  V  K  D  *  F  T  I  *  R  E  F  W  F  *  F  L  L  L  C  *  A  S  S  S  C  C  S  L :   I  Y  T  I  N  G  G  N  V  G  F  S  K  L  L  L  P  Q  R  R  T  D  K  S  W  K  Q  C  K  Q  S  K  F  F  R  L  N  L  Y  P  I  F  V  E  I  *  *  R  I  W  *  I  T  *  K  E  S  P  A  *  S  A  N  A  T  D  R  V  P  *  K  S  R  Y  K  W  S  S  S  *  N  G  T  Y  K  *  S  D  K  E  N  C  T  I  C  *  W  F  H  G  C  *  W  F  H  T  E  N  Q  W  N  K  S  S  *  A  C  C  Y  S  T  S  C  K  E  T  K  I  *  R  T  S  A  C  *  R  S  K  G  F  T  F  R  *  R  F  Q  L  G  *  *  E  L  *  F  H  P  K  K  Y  R  C  V  V  L  C  P  F  A  A  G  A  C  F  L  G  Q  C  E  M  D  I  C  G  W  L  Y  *  R  *  T   : E  S  E  K  T  W  N  S  F  M  V  K  R  M  C  A  A  A  W  P  N  I  Y  Q  T  W  A  V  I  L  Y  *  I  *  S  I  S  S  R  I  C  R  *  A  C  *  V  A   : G  Q  S  T  S  L  L  P  R  E  S  K  R  V  Y  *  K  G  A  G  N  S  S  *  Y  F  V  *  G  V  *  R  S  T  H  C  S  S  *  S  W  S   : G  A  P  G  Y  L  T  Q  W  R  E  S  C  C  K  S  S  E  T  R  P  K  E  T  I  *  H  *  S   </second_frame>
            <third_frame>   L  S  T  T  K  E  F  S  *  E  G  K  K  N  W  N  F  M  I  L  N  *  L  T  E  K  K  Q  K  Y  N  S  E  L  P  R  V  H  A  K  C  L  F  I  L  H  L  S  L  K  Q  *  K  S  K  L  S  D  L  P  I  C  L  W  S  T  R  I  W  L  K  I  D  S  Q  F  K  E  S  S  G  F  D  S  C  C  C  A  K  L  L  L  L  A  A  H   : *  Y  I  P  *  M  A  A  M  L  A  S  Q  S  C  Y  C  R  R  G  E  L  I  N  H  G  S  N  A  N  N  L  S  F  S  G  S  I  S  I  L  F  L  S  K  F  D  R  E  S  G  K  S  P  R  K  S  H  R  L  K  V  Q  M  Q  Q  T  E  S  P  E  K  V  G  I  N  G  R  P  V  K  M  V  P  T  S  E  V  T  K  R  I  A  P  S  A  N  G  S  T  V  V  N  G  S  T  Q  R  I  N  G  T  N  L  A  K  R  V  A  T  P  L  P  A  K  K  Q  K  S  K  E  L  L  P  A  E  D  L  K  V  L  P  S  D  E  G  F  S  W  A  N  E  N  Y  N  S  I  Q  R  S  I  D  V  W  S  F  V  L  S  L  R  V  R  V  F  L  D  N  A  K  W  T  Y  V  G  G  F  T  E  D  K  Q  :  K  V  R  R  R  G  T  A  S  W  L  R  E  C  V  L  Q  L  G  P  T  F  I  K  L  G  Q  L  S  S  T  R  S  D  L  F  P  R  E  F  V  D  E  L  A  K  L  Q  :  D  R  V  P  A  F  S  P  E  R  A  K  E  F  I  K  K  E  L  G  I  P  V  D  I  L  Y  K  E  F  E  D  Q  P  I  A  A  A  S  L  G  Q  :  V  H  R  A  I  L  H  S  G  E  K  V  V  V  K  V  Q  R  P  G  L  K  K  L  F  D  I  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0069G15.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150753" stop="150193"/>
                    <exon start="150030" stop="149887"/>
                    <exon start="149749" stop="149624"/>
                    <exon start="149380" stop="149294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MAAMLASQSCYCRRGELINHGSNANNLSFSGSISILFLSKFDRESGKSPRKSHRLKVQMQQTESPEKVGINGRPVKMVPTSEVTKRIAPSANGSTVVNGSTQRINGTNLAKRVATPLPAKKQKSKELLPAEDLKVLPSDEGFSWANENYNSIQRSIDVWSFVLSLRVRVFLDNAKWTYVGGFTEDKQKVRRRGTASWLRECVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPERAKEFIKKELGIPVDILYKEFEDQPIAAASLGQVHRAILHSGEKVVVKVQRPGLKKLFDIDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 272 chains have been computed
$ 
$ memory statistics:
$ 421544 bytes spliced alignments in total
$ 139 spliced alignments have been stored
$ 3032 bytes was the average size of a spliced alignment
$ 38752 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1845 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 340 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 18:29:17
-->
