<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 00:08:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315076" ref_strand="+" ref_description="SGN-U315076        Tomato 200607 #1 [32 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP synthase protein I -related, contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I (Synechococcus sp.) | chr2:13215983-13218162 REVERSE | Aliases: T16B12.15, T16B12_15(evalue: 2e-91, score=333) genbank/nr: gi|21593011|gb|AAM64960.1| unknown [Arabidopsis thaliana](evalue: 5e-90, score=334)">
      <seq>atatttattttcccttgtctataagatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcacttattaagggagctgttgggcagccaaggctattggttcctgttactttggtcatgatttttaatcggtggaatgggatcctagtcccagagtatggattcatgcacctcgagttgatacccatgctagtcggatttttcacttacaagattgcaacttttgtccaagcaatcgaggaaggtgtatcgatcattggaaataagtcacaagcttagctctagtttttatgattttccatcaacctctaatgaaaatagtagaggagaaaaaagttcaggaagacgttggattcgaaaaatgagctacaacatctatactcaatttatcactggatggattgaacaaatcgatgatttcctcatgtaaattcttatatatactagatcgtgctctcagtttcgttgataatctcaagtttcttatcccgttgaaggtttatgaatcgttttccataaaaaaaaaaaagagtgtaaattcttctagttaattacgattatcaggagtttccattttgtgccactttctattatacaagagcaagttcgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="8495" stop="1958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8195" g_stop="7814" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6662" g_stop="6613" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="432" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6532" g_stop="6457" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="508" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6456" i_stop="6368" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6367" g_stop="6272" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="604" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6271" i_stop="6134" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6133" g_stop="6053" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="685" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6052" i_stop="5955" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5954" g_stop="5863" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="777" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5862" i_stop="5440" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5439" g_stop="5344" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="873" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5343" i_stop="4863" i_length="481">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4862" g_stop="4794" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="942" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4793" i_stop="4406" i_length="388">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4405" g_stop="4222" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="943" r_stop="1126" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4221" i_stop="3891" i_length="331">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3890" g_stop="3831" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1127" r_stop="1186" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="3830" i_stop="2495" i_length="1336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="2494" g_stop="2275" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1187" r_stop="1406" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1415" polyA_stop="1429"/>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U315076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1406</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8195" e_stop="7814"/>
          <exon e_start="6662" e_stop="6613"/>
          <exon e_start="6532" e_stop="6457"/>
          <exon e_start="6367" e_stop="6272"/>
          <exon e_start="6133" e_stop="6053"/>
          <exon e_start="5954" e_stop="5863"/>
          <exon e_start="5439" e_stop="5344"/>
          <exon e_start="4862" e_stop="4794"/>
          <exon e_start="4405" e_stop="4222"/>
          <exon e_start="3890" e_stop="3831"/>
          <exon e_start="2494" e_stop="2275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</genome_strand>
        <mrna_strand>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG...........................................................................................................................................................................................................................................................................................................................................AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315077" ref_strand="+" ref_description="SGN-U315077        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP synthase protein I -related, contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I (Synechococcus sp.) | chr2:13215983-13218162 REVERSE | Aliases: T16B12.15, T16B12_15(evalue: 8e-55, score=211) genbank/nr: gi|18402535|ref|NP_565711.1| expressed protein [Arabidopsis thaliana] gi|25370752|pir||G84715 hypothetical protein At2g31040 [imported] - Arabidopsis thaliana gi|3746067|gb|AAC63842.1| expressed protein [Arabidopsis thaliana] gi|15215861|gb|AAK91474.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|19699268|gb|AAL91000.1| At2g31040/T16B12.15 [Arabidopsis thaliana] gi|20197222|gb|AAM14978.1| expressed protein [Arabidopsis thaliana](evalue: 6e-53, score=211)">
      <seq>gatcaaaaaacacaaccccatcactccaaattgaacaaaaatgggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaacaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctcagtcaagggaacagtatcttaagttaaagaataaattgcagctcctcacagttgggattggtggtgttggtgtgatttcagcttatatctcttattctcctgaaataacagtaagttacactgctgggttgattggttctttgatgtacatgcgtatgcttggaaacagtgtggattctatgcagtcagatggacccagagcccttattaagggagctgttgggcagccaaggctattggttcctgttgctttggtcatgatttttaatcggtggaatgggatcctagtcccaaagtatggattcatgcccctcgagttgatacccatgctagtgggatttttcacttacaaaattgcaacttttgtccaagcaatcgaggaaggggtttcgatccttggaaataagtcccaagcttagctttagtttttatgattttccctcaccctttaatgaaaatagtaaaggaaaaaaaagttcaggaagacgttggatttgaaaaatgaggtccaacatttatactcaatttatcccgggagggattgaacaaatcgatgatttcctcatgtaaatttttaaaaaaaatagatcgggctttcagttttgttgataatttcaagttttttatcccgttgaaggtttttgaattgttttccataaaaaaaaaaaaaagggtaaatttttttagttaattacgattatcaggggtttcccttttgggccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="8471" stop="1995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8171" g_stop="7814" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6662" g_stop="6613" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="401" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6532" g_stop="6457" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="477" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6456" i_stop="6334" i_length="123">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6333" g_stop="6272" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="539" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6271" i_stop="6134" i_length="138">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6133" g_stop="6053" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="620" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6052" i_stop="5955" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5954" g_stop="5863" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="712" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5862" i_stop="5440" i_length="423">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5439" g_stop="5344" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="808" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5343" i_stop="4863" i_length="481">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4862" g_stop="4794" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="809" r_stop="877" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4793" i_stop="4406" i_length="388">
            <donor d_prob="0.913" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4405" g_stop="4222" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="1061" r_length="184" r_score="0.929"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4221" i_stop="3891" i_length="331">
            <donor d_prob="0.975" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3890" g_stop="3831" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1062" r_stop="1121" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="3830" i_stop="2495" i_length="1336">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="2494" g_stop="2302" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1314" r_length="193" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1322" polyA_stop="1368"/>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U315077" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1321</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8171" e_stop="7814"/>
          <exon e_start="6662" e_stop="6613"/>
          <exon e_start="6532" e_stop="6457"/>
          <exon e_start="6333" e_stop="6272"/>
          <exon e_start="6133" e_stop="6053"/>
          <exon e_start="5954" e_stop="5863"/>
          <exon e_start="5439" e_stop="5344"/>
          <exon e_start="4862" e_stop="4794"/>
          <exon e_start="4405" e_stop="4222"/>
          <exon e_start="3890" e_stop="3831"/>
          <exon e_start="2494" e_stop="2302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAGGTACTTGTTTGTGTTTATTCCGCATAAATCACTCTTTGTTGAGATAAATTGACTTTTCATATCACCGTTTTGATTGTTCCTTTTTCTTGTCTTTCCAGTTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAGGTAATCCAAAACTTCCTATATGGCTATATGCTTTAATTCCTTTACACGTCAACGTTAGAATTACTCGTGTTTGATTTACTATTGTTGTAGTGGGACATGACCCCTATTTATTACAAACCGTTCCTCCAATTAGTATATTGGTCCCTTAAGTTGTCAGTTTGAAAAATTTCTTGACGAAGAGAATCTTAATTTGCTTATTTCTTCTGATTTGTGTAACTGATGCAATGTATGGAAATTTCCTCGACTGAAATATCTTTAGCTGCTAGAATTCTTGTAATGTCCTCTGTCAGGCCTGGACGTTTTTAGCTTCTCTTTGCTTAGATTTAATTAATGTAAGGAATCTTTAGTTTTTTCAAATCTGGCAATAGCACTCATGCAGAAATTGTGGTGTTAATGAACTGTTGTATTTTTTCATTCTTGCAGTTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAAGTACATTTTTTGATTGTTTATCTTTACCAAATGGCTCCTTCTATGCCATTCTTGCATTATCTCAAACCTAAACATCATTTGTTTCTTTGTGTTGCATGTGCGTGTCTTAATGGAGGCGATTGATGCCAATTGACAATAGGAAGCCCAATTTTCTTATGCGTTTTGCATGAGCTACACTGCTACTATTTTACAGCATTTTGTAAAATTGTTAATGGAGCATCCTATTACCACTTCATCACATTTAAATCGATATTGTCATTTTTGAATTGTAATTGTACGTGGTCACTCAAATAGTAGTTCTTAGCGAATTGTCAGTTTCATCGTTCCAGGATTGGAAGTCATTAACTCACAGTCATAGTAGAAGCCAAACACTTGCATGATTAAATGATGCTGTTGTTTGAGACTAAGAAGAGTAGCTATATCCCTAAAACGGACTGTTTTGAGCTCTGCTTGATAAGCTTAACCGAACTTTTAATTTCAGGGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGGGTAAGCTCTACCACTATTACGATATTGACCAAAAAGATATGTGTCGAGATTAACTGTTAAATAAAACTTCTCTTCTTGATTCAAGCAAATTTCTTAGAACCTCTTGTTTATTTTCTGAAAACTACTATTGGTAGCATAAATCTATCTGCAATCTGAACTCAAGGAAGTTGGGGCTATTTTATGGGGCTTCAACTTCCTCTCTTGATCCATTTTCTCGCCATTTTCCTGCTTGTACACGCCAAAAAATCCAGCCTAGTTTAACTTTTTTCCGCATTCCCCCCTTTTTACTTCTACTACACTTGCATCCAAAGAATACTTTAATGACTTCTCTTTCATTGTTATGAAGAGTTGCCTAAGCATTTGATCTTACAATTTGATTTATTTCCAGGATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAGGTATGCTTCAACTGAACCTCCCATCTACAACTTTTATCATATTTTCAAATTACCATGAATCTTAGATTTGAATAAATGTGTTCAAATTTTCGTGTTCCATCTTAGTATAGAACTTGTTTAGAACCATGCCGTGGAATAACCAGTAAAGTTGTTGTCTAGGGGGTCACGGGTTCAAGCCCTGGAAACCAGCAGGGTAAGGTTGAGTACAGTGGACCCTTGTGTCCAGCTCTTCTCCGGATATACATGGAGCTTACTGCATCAGACTGTTCTTTTTGTCACGTCAAATACTAGTATGTATGTCCTGTCTCACACTCGATATTTCTTGTTGCAGAGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCAATTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGTTTCGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCCTGCCTCTGAACTTGCTGCCGCCATGAAGCAGATTAAAGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAAAAAAGTGGATAGCGCACGCGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCAGTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTCTCCGTATACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGTTCGAGTTCTGCTGTGATAACGGAGAGAGACTGCGTGTCACGTTCGCGCTGGACTGCTGTGATCGTGAGGCACTGCACTGGGCGGTCACTACCGGCGGCTTCAACAGTGAAACAGTACAGGACGACATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCAGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTT</genome_strand>
        <mrna_strand>GATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGA-TTT-TAT---AT--GGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA...........................................................................................................................CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT..........................................................................................................................................GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG..................................................................................................TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCCCTTATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTGCTTTGGTCATGATTTTTAATCGGTGGAATGG....................................................................................................................................................................................................................................................................................................................................................................................................GATCCTAGTCCCAAAGTATGGATTCATGCCCCTCGAGTTGATACCCATGCTAGTGGGATTTTTCACTTACAAAATTGCAACTTTTGTCCAAGCAATCGAGGAAGGGGTTTCGATCCTTGGAAATAAGTCCCAAGCTTAGCTTTAGTTTTTATGATTTTCCCTCACCCTTTAATGAAAATAGTAA...........................................................................................................................................................................................................................................................................................................................................AGGAAAAAAAAGTTCAGGAAGACGTTGGATTTGAAAAATGAGGTCCAACATTTATACTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATCCCGGGAGGGATTGAACAAATCGATGATTTCCTCATGTAAATTTTTAAAAAAAATAGATCGGGCTTTCAGTTTTGTTGATAATTTCAAGTTTTTTATCCCGTTGAAGGTTTTTGAATTGTTTTCCATAAAAAAAAAAAAAAGGGTAAATTTTTTTAGTTAATTACGATTATCAGGGGTTTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315075" ref_strand="+" ref_description="SGN-U315075        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP synthase protein I -related, contains weaks similarity to Swiss-Prot:P08443 ATP synthase protein I (Synechococcus sp.) | chr2:13215983-13218162 REVERSE | Aliases: T16B12.15, T16B12_15(evalue: 2e-33, score=139) genbank/nr: hypothetical(evalue: 8e-33, score=143)">
      <seq>ggagttctaagctactgctacctcccaattacctctacagccacacccatatctcaagattcttcaaacaatccaaccccattgtcaattccaacacaatccaagcagaaatctgtgaaattgtctagtggggtggctgctaatggggactatgctgctgacccgcccactaccactactaagcttaggaagtactggggtgaggatgtggatcctctcacctctgatgattttatatggaataaggaatttatgggtcgcatgaagaagtatattcaggatcctcaagaaaatgcccctgctgctgctgtaaaggaagagatatcaggatttcttagcttaaacagagtcatgaatcttgacagtttggaagttgacttgaccaaggagctaactgccccttcacaacctgttctagaaccagaagtcgaaaatactcaagctggttttactgcatctcaaaaatggcggccagcaccaacacgacgcgagcaggagaaatggggcaaagctgccaaggctgcaactgggggcagtgtacgtcattgaagcttgcaattagttcattgcttgtaacttaatttataatatttctttgctcacctcgtctctaactaataagatagagaaatatggttctctaagttgtagttccgaaatttttttatcatccaggacgtgatgttgagggaaataaaacgtcctcaaggggatccaaaggttatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="8428" stop="5776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8128" g_stop="7814" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6662" g_stop="6613" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="365" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.041" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6532" g_stop="6457" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6456" i_stop="6368" i_length="89">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6367" g_stop="6076" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U315075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8128" e_stop="7814"/>
          <exon e_start="6662" e_stop="6613"/>
          <exon e_start="6532" e_stop="6457"/>
          <exon e_start="6367" e_stop="6076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAGGTATAATCTTTGGCTTAATTGACCCTTACTACGCGTTCATCTTTTTTGAGCTGTTCTAGTCATAACTTATGACATGCTTTTTTCACAAAAGATTTTATCTTTTCTATGATTTGAATTTTTGGTTCTATTCTCTGTTGTGTTGTTCTGAGTTCCATGTTTACTTGTTCACTATTGACTTTGCTCCCCCCTAGTATTCATTTGGTGCGAGGTATAAGGTATAACAATTCCGGGATAAAATGCAGGATTATTTTGTCCTTGCATGTGGTTGGAGGTATTAGTAGTCTTTAAATTATTTATTCCACCATTTATACGGGATAAGTTATCCTATATACTTGGATGTCCCGGAATAATTATTAAGGATAACTTTTTCCCAACCAAACGACCTCTCAAGGTTTGGGAAATGCATCTGGTAAATTAACTTGGCTCATCCCTTAAGGCTTGGGAAGTGCATTGGGTAATTGAATATAGTTAATAATAAGGGTAAATTAGGAACTAAGTGATAAGTTATCTCTTAATTTTTCGAACTTGTCAAGTAAAAGTGAATACCTATTTGTCGTATAATGGACAAGTTTAAGTGGACGGAGGAAATATGTTTTGTGATGAAATCTTTATTTAATTGATAAGCTTCTCTTTATTGGTGTACATGCTAGTTTTCATGATGGGCACTTAACCCTCTTGGTCATTTTAATGGTTTGGCAATTAACAAGTTTCAAAAGTGTTCATTTTAATGAACTTATTTGAATTGGAACGGAGTTAAACAAAGTAATGAACACTTTTGAAACTTGTGGCGTTAATTATATCATAACTTTTATGTGACTATTAGACTTTTGAAACAATGTGATCTTAACTATGTCATACAGTAACATATATGAGGCTATAAAAGCGTCTAATAAGAGTAGAACAAGTTTTAGTTAAATTATTTCCAAATTTAGCAAGAACTCATTCTTTTTGGAATGAACTAAAAAGGAAGTAAGGTCACATAAAATTTCATGGGGGTGTGTTCTATCTGTGTGGTACTCTTGTATGAAGGATATAAAAAGTTGCCGTTAGCGTGTTGCATTATATGTTGGTCATAATACATGCATGTTGCTTAAGGAGTACCATTTTTTTTCAATGGTTGTGAATATTCTTGTGACTTTATATCTTAACAGGAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAGGTGTGATCCTTTTCTTCTTTTCTTCATACAAATTTAGAAATTTTGTTTCCTTCTAATATTTAATCACATATGGAGAATAGTTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAAGTATGTGGTAACTTTAAAACACTTGCCTTCAGCATCTTTAAGCATTAGCCTTTTCTACTACCATTGTTGAAAACTAAACTGATTTTCAGGCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</genome_strand>
        <mrna_strand>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG................................................................................TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA.........................................................................................GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326009" ref_strand="+" ref_description="SGN-U326009        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to unknown protein (ref:NP_011731.1) | chr5:18058153-18059787 FORWARD | Aliases: K23L20.5, K23L20_5(evalue: 1e-25, score=113) genbank/nr: gi|30694589|ref|NP_199284.2| expressed protein [Arabidopsis thaliana] gi|26451519|dbj|BAC42857.1| unknown protein [Arabidopsis thaliana] gi|28973445|gb|AAO64047.1| unknown protein [Arabidopsis thaliana](evalue: 7e-24, score=113)">
      <seq>aagacccgagattttattgaacaatttttctccttctttccactcaaaaactccattgaagcagccaagagcttatactacacagtaatcaatatatttggaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaagtgaatcggaatattgagcttctttttggatccaagaaatgaacttagggagactgaaaaatgtggtagctgctgcagcgattgaaggattagccgaggtaagggccaagatatttggtcatgtaattaatccaactgggcagcgatctgctcacaaggttttacgcaagaagctgatcggtgaaaaggtctcacaatggtacccacacgatatcatgaaagatgaccctcttgtgatggctcgtcaagagcaagagcgtctcagcaagcttgaaatgttgaaacgtcgtggaaaggggccacctaagaagggccagggcaaacaggctaagaaacgcaacaaatagagatgatagtctcactggtttgaaaaaaggggtatctaggattactatttgcaatttgattactaacttttctcatcagccacttgctttctagtgaacatcatctgcatactcttctacaatttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="13116" stop="10435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12816" g_stop="12663" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12662" i_stop="11212" i_length="1451">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11211" g_stop="10735" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="630" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U326009" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12816" e_stop="12663"/>
          <exon e_start="11211" e_stop="10735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAACTATAAACTGAGGGGTGCTTGAAATATGACTGGTTTTGTATGTATACTTATTTTGTAATTCTGTTGTCCATCAAAGACAAGCAAAGTTTTAATTCGTGATGAATTTATATATGTTTAGTATTTCTTTAGTTTTCGATTGATTGCATGCTGCACTTAAGGACCTTAGCCTTTTTTTGTTGCAATTTTTACTTTCAAGAACAATGAGTCTGATATATTTACAATTGTGTTAGGCTTCTCACTGAACCTTCTTTGAGACTCTGCTTCTCCTTTGTGCAGTGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTC</genome_strand>
        <mrna_strand>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAA-AAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341551" ref_strand="+" ref_description="SGN-U341551        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gaagtggcggatccagtctctcacaaagcaaggcagccgtttgttctcatcaaggcgatttagaagtttttgggatgatggaatatacaatgggaatgagattttgtgattgagtcggggactgatggcgttattcaggaagccttttcatgattttccttttgagaatttagaagcatgtctaaggtttcaagctgaggttgtgtcgagctttctgttctgttttcctttttagagtcttccggtccatcgtttgtttctatagttggagaactttgtattctggtcattcccagcatactaatggaaaagcatgaccaacgatatcttgttgttcctgtaaagcggagaatatgcatctaattctttgtatttatctgagagcaacttgtgatatttttatcagagaaatagaatgaatgtgatatagaggggactaatgtgacaatctgtgtcgacgttttgagtaggtaatacacaatctgtgttggttactttgattctttttttcttaaacggaagttttgtttgaattttgatcattgtttgggacaaatataaataggatgttatcaatccgaaatgtgatataaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="13016" stop="11187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12716" g_stop="12663" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12662" i_stop="12029" i_length="634">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12028" g_stop="11487" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="595" r_length="541" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U341551" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12716" e_stop="12663"/>
          <exon e_start="12028" e_stop="11487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAGGTTCGCTCCATTCTACATTCTTCATTTTCTTTTTCTTTTTTTTCTAATTTAAATTTGAATGTGTACATTTTCTGTCGTAACCTCCTTCGCAACGAGTAAATTAGTTTGTGCTTTCCATTTTTTCTAAAGTTGAAATTTAGCTTGTTGTTTACATTTCTCTGATTTTGCTTAGTTGTTGTTTACATGTTATCAATGAAATGATTTACTTCATAAAGTTCACTGTTTTTGTGGATTAGTTTCATATTTTCAATAGGTTAATTTGAATAGTTCTATGTTCTGTGCATATTTCAGCTAACTCTGTCCACCAAAGCTCAAATAAATAGGAAAAAGTGGATACTTCTTTGTAAAATAATTATTGGACTGATTTAGGCTTACAAAATAGGGGTTCAAATAAACTTGGTATGCATTAGAAGCCTGAAAATTGAAAAATCATTTACATTTCTTGAGTTAGGATGCATACCGGCATATGCATTCACTATTTGATTTCCCAGGTCAAAAGAATTAATTTCCCTTGCACATATGTTGTGCTAGTGAACAAATAAGAAGGTTGATGTCTCTTTGGAATGTTGTAATTTTTTTTTTCTTCAAAAATACGTAAAGAAAGTGATGTCTCGTAACTCTTCTTGATATATAGGCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</genome_strand>
        <mrna_strand>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTC-TTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGGACAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327005" ref_strand="+" ref_description="SGN-U327005        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>cttctgttaagttacaattttcaagtcagctactttagtttttgatcaaatctggcttaatcttctcaaggttgtttcttccaattttccaggttagctacttcttcaattctccgtctaacatttttttttttgaatgttgtctgatccgtgtctatctattttgggagagctagctcagatacgagggaaacattcctatattccttactgccatctttatatgtaaaaggatatctttcttgacgtttggttatgataaatatatttctctaagttcttttgttgcaatttttgcattgaaatcaatcttctcttaggagttggaattggaagtgaccaagcatatgcgactcataccctatcgctctgctaagtagggctcttaacaaaaggaaggtaaaatcgatattggttgtcaattagaacagcaagtccaaacttttattgttttaggtatattggctccctgacagtaccacaggatgttatctggaatattaatagaaaggaaattaactattaaggccaatttttgttaatgaaaatgaaatatgcaaccatttccatttgaagtaaattttgctttttagttttacaggtgaaagccaaatgaaactgatcccagatgctgttcatgacgcgagttgctgccaatttgtaagtgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="14862" stop="13598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14571" g_stop="13898" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U327005" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14571" e_stop="13898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACA-TTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</genome_strand>
        <mrna_strand>CTTCTGTTAAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCC-AATTTGTAAGTGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344320" ref_strand="+" ref_description="SGN-U344320        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G12560.1 | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr4:7441764-7443741 FORWARD | Aliases: T1P17.150, T1P17_150 (evalue: 5e-15, score=78.6) genbank/nr: gi|47824945|gb|AAT38719.1| putative F-Box protein [Solanum demissum] (evalue: 8e-15, score=84)">
      <seq>ttaatttgcagaaattcagctccagtgaagagatccgtcgccggtgagaaatgtcggattatttgcctcaagaattattggttgatatcttcacaaaactaccagtcaaatcaatcctccgatgcagaagtgtttgcaagtcatggtattctcttcttactagccctagctttaccttcacacatctcaatcgaaaacgagatgatcatatgctgattaggaattatggtagaagcactcgattagatatgtatcctttgtttggtaacaatgagaggttggatcccgaccatttcttagatttttcatttcgtagaggttccgttagtatagtgggtagtgttaatggtattttgtgcctcgccgacaccgacaccgacgccgacaccgacaccgacgccgacgccgataccgatgccgacgccgactccgccatcttgacccatttatatttttgtaacctatccatcagaaagtcggtaaaactccctgaaccagttcgtagtacctatcgtttcacactggggtttgggtttgattcggttactaatgactacaaggtggtaagagtagtacacgctatgggacaatcaaagccacatgctgatctttataagttaagtactggtgtttgggaagacatttccaatgtccctgagccttacatattaattttcattgagccacagggcccacaggtgtatgtgaacggcgcttgtcattggatactactaaattggagttacaccagctcggaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="-" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="23767" stop="22404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23467" g_stop="22704" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="-" ref_id="SGN-U344320" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23467" e_stop="22704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTCCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGATTACTACTAAATTGGAGTTTACACCAGCTCGGAGGAAT</genome_strand>
        <mrna_strand>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTTCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGA-TACTACTAAATTGGAG-TTACACCAGCTCGGAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-z5wdh4/lycopersicum_combined_unigene_seqs" ref_id="SGN-U341208" ref_strand="+" ref_description="SGN-U341208        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | copper-binding family protein, similar to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam heavy-metal-associated domain PF00403 | chr1:1931670-1932265 REVERSE | Aliases: T2D23.3, T2D23_3(evalue: 3e-42, score=169) genbank/nr: gi|8927670|gb|AAF82161.1| Contains similarity to a copper homeostasis factor (CCM) mRNA from Arabidopsis thaliana gb|U88711 and contains a heavy-metal-associated PF|00403 domain (evalue: 1e-40, score=170)">
      <seq>ggacgaggccagttaaatttctaaagttcattagcaagagcttgaagatgacctcgatgacagagatgagagtacacatggattgtgccggatgtgagagcaaggtcagaaaatctctcgagaaagttaaaggtgttgataatgtagaaatagatatgtctatgcaaaaggtgacagtaacaggatgggctgatcaaaagaaaatactcaaaacagttagaagaactggtaaaagagctgaaatatggcaatttcctcataatcctgagatgagaaataaccctacttatgtaaccgatcattattatcaacaacaaggctgcagtggtccgaccacttattatgccggagaaccaccggcttcctcctataactatcgcaaacacggctacgataactatggccgtgcctatagtctttacaggggcaattcaaacacatttggtagtcgtgttggtgatgcttttagtgatgagaatcctcgtggttgtaatattatgtaattgttgtttgatgttgtcgattattaaatgtaagagcctgtttgaattgacttcgttaaaaaaatgtataatacataaatatgactttaatttgacgtcagttgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C07HBa0076O09-25BVH/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C07HBa0076O09.1" temp_strand="+" temp_description="C07HBa0076O09.1  AC212625.1 htgs_phase:1 submitted_to_sgn_as:gi|158262121|gb|AC212625.1| upload_account_name:france Solanum lycopersicum chromosome 7 clone C07HBa0076O09, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces">
        <position start="33280" stop="35048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33566" g_stop="33622" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33623" i_stop="33745" i_length="123">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33746" g_stop="33821" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="132" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33822" i_stop="34269" i_length="448">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34270" g_stop="34748" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="611" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="622"/>
      <MATCH_line gen_id="C07HBa0076O09.1" gen_strand="+" ref_id="SGN-U341208" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C07HBa0076O09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33566" e_stop="33622"/>
          <exon e_start="33746" e_stop="33821"/>
          <exon e_start="34270" e_stop="34748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGAAAAAGAAACATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACAACGGTAATCACTATCTCCTCTATCTTTAATTTTTCTCTATAATTTTTATATAATTCGATCGTAATATAAGGAAAGATTTTGAACCAATTTTATATGCCTTAATACGCACTATGTTTTGGTTTACAGATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAGGTAATATACTTATAAGTTACATCACTGGCGGACACTGTTTCGCTGAAAAATTACTTATAGTGGTTAAATTTTAGTTTTATAAATATAAATATATAAATTGACACATTTTGAATTAAAGGGTTGATCTATTGATTAGGAGCTTAGAAACACTATATGAGATCGTGTGTTTGCCCTACTAGCCTATTTATTTATAATTTTTTTACTATAACCTTTGACACCTCTTAATAAATTTTTTTACTTTGATTCTTAACATTCCTTAATGAAAATTCTGTGTCCGTCACTATGCACTAATACACAATAGATTCGAGCTCAAAAAAACTTCTATCTGCTCTGAGATTCGATCTCAAAAAAACTTCTATCTGCTTTGATCTTGTTGTCTGACCATCTCATCTAAAAGTTTAAGCTGTTAGAGATATATTGTGAACATAATTTTTGACGTCAAATTCAGGTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCTTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</genome_strand>
        <mrna_strand>GGACGAG-GCCAGTTAAATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACCTCG...........................................................................................................................ATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCGTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8195" PGL_stop="2275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8195" e_stop="7814"/>
            <exon e_start="6662" e_stop="6613"/>
            <exon e_start="6532" e_stop="6457"/>
            <exon e_start="6367" e_stop="6272"/>
            <exon e_start="6133" e_stop="6053"/>
            <exon e_start="5954" e_stop="5863"/>
            <exon e_start="5439" e_stop="5344"/>
            <exon e_start="4862" e_stop="4794"/>
            <exon e_start="4405" e_stop="4222"/>
            <exon e_start="3890" e_stop="3831"/>
            <exon e_start="2494" e_stop="2275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8195" e_stop="7814" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6662" e_stop="6613" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6532" e_stop="6457" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6456" i_stop="6368" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6367" e_stop="6272" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6271" i_stop="6134" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6133" e_stop="6053" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6052" i_stop="5955" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5954" e_stop="5863" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5862" i_stop="5440" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5439" e_stop="5344" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5343" i_stop="4863" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4862" e_stop="4794" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4793" i_stop="4406" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4405" e_stop="4222" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4221" i_stop="3891" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3890" e_stop="3831" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3830" i_stop="2495" i_length="1336"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2494" e_stop="2275" e_length="220"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8195" stop="7814"/>
              <exon start="6662" stop="6613"/>
              <exon start="6532" stop="6457"/>
              <exon start="6367" stop="6272"/>
              <exon start="6133" stop="6053"/>
              <exon start="5954" stop="5863"/>
              <exon start="5439" stop="5344"/>
              <exon start="4862" stop="4794"/>
              <exon start="4405" stop="4222"/>
              <exon start="3890" stop="3831"/>
              <exon start="2494" stop="2275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTATTTTCCCTTGTCTATAAGATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA : ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTTGTGCCACTTTCTATTATACAAGAGCAA</gDNA_template>
            <first_frame> I  F  I  F  P  C  L  *  D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L   : N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I  L  C  H  F  L  L  Y  K  S   </first_frame>
            <second_frame>  Y  L  F  S  L  V  Y  K  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  :  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  C  A  T  F  Y  Y  T  R  A  </second_frame>
            <third_frame>   I  Y  F  P  L  S  I  R  S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q :   F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F  V  P  L  S  I  I  Q  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8137" stop="7814"/>
                    <exon start="6662" stop="6613"/>
                    <exon start="6532" stop="6457"/>
                    <exon start="6367" stop="6272"/>
                    <exon start="6133" stop="6053"/>
                    <exon start="5954" stop="5863"/>
                    <exon start="5439" stop="5344"/>
                    <exon start="4862" stop="4794"/>
                    <exon start="4405" stop="4267"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8128" e_stop="7814"/>
            <exon e_start="6662" e_stop="6613"/>
            <exon e_start="6532" e_stop="6457"/>
            <exon e_start="6367" e_stop="6076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8128" e_stop="7814" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6662" e_stop="6613" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6532" e_stop="6457" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6456" i_stop="6368" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6367" e_stop="6076" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7814"/>
              <exon start="6662" stop="6613"/>
              <exon start="6532" stop="6457"/>
              <exon start="6367" stop="6076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : GCTGGTTTTACTGCATCTCAAAAATGGCGGCCAGCACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGTGTACGTCATTGAAGCTTGCAATTAGTTCATTGCTTGTAACTTAATTTATAATATTTCTTTGCTCACCTCGTCTCTAACTAATAAGATAGAGAAATATGGTTCTCTAAGTTGTAGTTCCGAAATTTTTTTATCATCCAGGACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTC</gDNA_template>
            <first_frame> G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  A  G  F  T  A  S  Q  K  W  R  P  A  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  V  R  H  *  S  L  Q  L  V  H  C  L  *  L  N  L  *  Y  F  F  A  H  L  V  S  N  *  *  D  R  E  I  W  F  S  K  L  *  F  R  N  F  F  I  I  Q  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  </first_frame>
            <second_frame>  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  K :   L  V  L  L  H  L  K  N  G  G  Q  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V  Y  V  I  E  A  C  N  *  F  I  A  C  N  L  I  Y  N  I  S  L  L  T  S  S  L  T  N  K  I  E  K  Y  G  S  L  S  C  S  S  E  I  F  L  S  S  R  T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L </second_frame>
            <third_frame>   S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : S  W  F  Y  C  I  S  K  M  A  A  S  T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q  C  T  S  L  K  L  A  I  S  S  L  L  V  T  *  F  I  I  F  L  C  S  P  R  L  *  L  I  R  *  R  N  M  V  L  *  V  V  V  P  K  F  F  Y  H  P  G  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8128" stop="7814"/>
                    <exon start="6662" stop="6613"/>
                    <exon start="6532" stop="6457"/>
                    <exon start="6367" stop="6260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQAGFTASQKWRPAPTRREQEKWGKAAKAATGGSVRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8171" e_stop="7814"/>
            <exon e_start="6662" e_stop="6613"/>
            <exon e_start="6532" e_stop="6457"/>
            <exon e_start="6333" e_stop="6272"/>
            <exon e_start="6133" e_stop="6053"/>
            <exon e_start="5954" e_stop="5863"/>
            <exon e_start="5439" e_stop="5344"/>
            <exon e_start="4862" e_stop="4794"/>
            <exon e_start="4405" e_stop="4222"/>
            <exon e_start="3890" e_stop="3831"/>
            <exon e_start="2494" e_stop="2302"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.041" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.939" e_score="0.990"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.975" acc_prob="0.987" e_score="0.929"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="8171" e_stop="7814" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7813" i_stop="6663" i_length="1151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6662" e_stop="6613" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.041">
            <gDNA_intron_boundary i_start="6612" i_stop="6533" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6532" e_stop="6457" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6456" i_stop="6334" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6333" e_stop="6272" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="6271" i_stop="6134" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6133" e_stop="6053" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="6052" i_stop="5955" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5954" e_stop="5863" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5862" i_stop="5440" i_length="423"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="5439" e_stop="5344" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5343" i_stop="4863" i_length="481"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="4862" e_stop="4794" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4793" i_stop="4406" i_length="388"/>
          </intron>
          <exon e_serial="9" e_score="0.929">
            <gDNA_exon_boundary e_start="4405" e_stop="4222" e_length="184"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.987">
            <gDNA_intron_boundary i_start="4221" i_stop="3891" i_length="331"/>
          </intron>
          <exon e_serial="10" e_score="0.917">
            <gDNA_exon_boundary e_start="3890" e_stop="3831" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3830" i_stop="2495" i_length="1336"/>
          </intron>
          <exon e_serial="11" e_score="0.891">
            <gDNA_exon_boundary e_start="2494" e_stop="2302" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8171" stop="7814"/>
              <exon start="6662" stop="6613"/>
              <exon start="6532" stop="6457"/>
              <exon start="6333" stop="6272"/>
              <exon start="6133" stop="6053"/>
              <exon start="5954" stop="5863"/>
              <exon start="5439" stop="5344"/>
              <exon start="4862" stop="4794"/>
              <exon start="4405" stop="4222"/>
              <exon start="3890" stop="3831"/>
              <exon start="2494" stop="2302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAAAAAACACAACCCCATCACTCCAAATTGAACAAAAATGGGAGTTCTAAGCTACTGCTACCTCCCAATTACCTCTACAGCCACACCCATATCTCAAGATTCTTCAAACAATCCAACCCCATTGTCAATTCCAACACAATCCAAGCAGAAATCTGTGAAATTGTCTAGTGGGGTGGCTGCTAATGGGGACTATGCTGCTGACCCGCCCACTACCACTACTAAGCTTAGGAAGTACTGGGGTGAGGATGTGGATCCTCTCACCTCTGATGATTTTATATGGAATAAGGAATTTATGGGTCGCATGAAGAAGTATATTCAGGATCCTCAAGAAAATGCCCCTGCTGCTGCTGTAAAG : GAAGAGATATCAGGATTTCTTAGCTTAAACAGAGTCATGAATCTTGACAG : TTTGGAAGTTGACTTGACCAAGGAGCTAACTGCCCCTTCACAACCTGTTCTAGAACCAGAAGTCGAAAATACTCAA : CACCAACACGACGCGAGCAGGAGAAATGGGGCAAAGCTGCCAAGGCTGCAACTGGGGGCAGT : GACGTGATGTTGAGGGAAATAAAACGTCCTCAAGGGGATCCAAAGGTTATGGCTGCTCAGTCAAGGGAACAGTATCTTAAG : TTAAAGAATAAATTGCAGCTCCTCACAGTTGGGATTGGTGGTGTTGGTGTGATTTCAGCTTATATCTCTTATTCTCCTGAAATAACAGTAAG : TTACACTGCTGGGTTGATTGGTTCTTTGATGTACATGCGTATGCTTGGAAACAGTGTGGATTCTATGCAGTCAGATGGACCCAGAGCACTTATTAA : GGGAGCTGTTGGGCAGCCAAGGCTATTGGTTCCTGTTACTTTGGTCATGATTTTTAATCGGTGGAATGG : GATCCTAGTCCCAGAGTATGGATTCATGCACCTCGAGTTGATACCCATGCTAGTCGGATTTTTCACTTACAAGATTGCAACTTTTGTCCAAGCAATCGAGGAAGGTGTATCGATCATTGGAAATAAGTCACAAGCTTAGCTCTAGTTTTTATGATTTTCCATCAACCTCTAATGAAAATAGTAG : AGGAGAAAAAAGTTCAGGAAGACGTTGGATTCGAAAAATGAGCTACAACATCTATACTCA : ATTTATCACTGGATGGATTGAACAAATCGATGATTTCCTCATGTAAATTCTTATATATACTAGATCGTGCTCTCAGTTTCGTTGATAATCTCAAGTTTCTTATCCCGTTGAAGGTTTATGAATCGTTTTCCATAAAAAAAAAAAAGAGTGTAAATTCTTCTAGTTAATTACGATTATCAGGAGTTTCCATTTT</gDNA_template>
            <first_frame> D  Q  K  T  Q  P  H  H  S  K  L  N  K  N  G  S  S  K  L  L  L  P  P  N  Y  L  Y  S  H  T  H  I  S  R  F  F  K  Q  S  N  P  I  V  N  S  N  T  I  Q  A  E  I  C  E  I  V  *  W  G  G  C  *  W  G  L  C  C  *  P  A  H  Y  H  Y  *  A  *  E  V  L  G  *  G  C  G  S  S  H  L  *  *  F  Y  M  E  *  G  I  Y  G  S  H  E  E  V  Y  S  G  S  S  R  K  C  P  C  C  C  C  K   : G  R  D  I  R  I  S  *  L  K  Q  S  H  E  S  *  Q  :  F  G  S  *  L  D  Q  G  A  N  C  P  F  T  T  C  S  R  T  R  S  R  K  Y  S   : T  P  T  R  R  E  Q  E  K  W  G  K  A  A  K  A  A  T  G  G  S  :  D  V  M  L  R  E  I  K  R  P  Q  G  D  P  K  V  M  A  A  Q  S  R  E  Q  Y  L  K  :  L  K  N  K  L  Q  L  L  T  V  G  I  G  G  V  G  V  I  S  A  Y  I  S  Y  S  P  E  I  T  V  S :   Y  T  A  G  L  I  G  S  L  M  Y  M  R  M  L  G  N  S  V  D  S  M  Q  S  D  G  P  R  A  L  I  K :   G  A  V  G  Q  P  R  L  L  V  P  V  T  L  V  M  I  F  N  R  W  N  G :   I  L  V  P  E  Y  G  F  M  H  L  E  L  I  P  M  L  V  G  F  F  T  Y  K  I  A  T  F  V  Q  A  I  E  E  G  V  S  I  I  G  N  K  S  Q  A  *  L  *  F  L  *  F  S  I  N  L  *  *  K  *  *  :  R  R  K  K  F  R  K  T  L  D  S  K  N  E  L  Q  H  L  Y  S  :  I  Y  H  W  M  D  *  T  N  R  *  F  P  H  V  N  S  Y  I  Y  *  I  V  L  S  V  S  L  I  I  S  S  F  L  S  R  *  R  F  M  N  R  F  P  *  K  K  K  R  V  *  I  L  L  V  N  Y  D  Y  Q  E  F  P  F  </first_frame>
            <second_frame>  I  K  K  H  N  P  I  T  P  N  *  T  K  M  G  V  L  S  Y  C  Y  L  P  I  T  S  T  A  T  P  I  S  Q  D  S  S  N  N  P  T  P  L  S  I  P  T  Q  S  K  Q  K  S  V  K  L  S  S  G  V  A  A  N  G  D  Y  A  A  D  P  P  T  T  T  T  K  L  R  K  Y  W  G  E  D  V  D  P  L  T  S  D  D  F  I  W  N  K  E  F  M  G  R  M  K  K  Y  I  Q  D  P  Q  E  N  A  P  A  A  A  V  K  :  E  E  I  S  G  F  L  S  L  N  R  V  M  N  L  D  S :   L  E  V  D  L  T  K  E  L  T  A  P  S  Q  P  V  L  E  P  E  V  E  N  T  Q  :  H  Q  H  D  A  S  R  R  N  G  A  K  L  P  R  L  Q  L  G  A  V :   T  *  C  *  G  K  *  N  V  L  K  G  I  Q  R  L  W  L  L  S  Q  G  N  S  I  L  S :   *  R  I  N  C  S  S  S  Q  L  G  L  V  V  L  V  *  F  Q  L  I  S  L  I  L  L  K  *  Q  *   : V  T  L  L  G  *  L  V  L  *  C  T  C  V  C  L  E  T  V  W  I  L  C  S  Q  M  D  P  E  H  L  L   : R  E  L  L  G  S  Q  G  Y  W  F  L  L  L  W  S  *  F  L  I  G  G  M   : G  S  *  S  Q  S  M  D  S  C  T  S  S  *  Y  P  C  *  S  D  F  S  L  T  R  L  Q  L  L  S  K  Q  S  R  K  V  Y  R  S  L  E  I  S  H  K  L  S  S  S  F  Y  D  F  P  S  T  S  N  E  N  S  R :   G  E  K  S  S  G  R  R  W  I  R  K  M  S  Y  N  I  Y  T  Q :   F  I  T  G  W  I  E  Q  I  D  D  F  L  M  *  I  L  I  Y  T  R  S  C  S  Q  F  R  *  *  S  Q  V  S  Y  P  V  E  G  L  *  I  V  F  H  K  K  K  K  E  C  K  F  F  *  L  I  T  I  I  R  S  F  H  F </second_frame>
            <third_frame>   S  K  N  T  T  P  S  L  Q  I  E  Q  K  W  E  F  *  A  T  A  T  S  Q  L  P  L  Q  P  H  P  Y  L  K  I  L  Q  T  I  Q  P  H  C  Q  F  Q  H  N  P  S  R  N  L  *  N  C  L  V  G  W  L  L  M  G  T  M  L  L  T  R  P  L  P  L  L  S  L  G  S  T  G  V  R  M  W  I  L  S  P  L  M  I  L  Y  G  I  R  N  L  W  V  A  *  R  S  I  F  R  I  L  K  K  M  P  L  L  L  L  *  R :   K  R  Y  Q  D  F  L  A  *  T  E  S  *  I  L  T   : V  W  K  L  T  *  P  R  S  *  L  P  L  H  N  L  F  *  N  Q  K  S  K  I  L  N :   T  N  T  T  R  A  G  E  M  G  Q  S  C  Q  G  C  N  W  G  Q   : *  R  D  V  E  G  N  K  T  S  S  R  G  S  K  G  Y  G  C  S  V  K  G  T  V  S  *   : V  K  E  *  I  A  A  P  H  S  W  D  W  W  C  W  C  D  F  S  L  Y  L  L  F  S  *  N  N  S  K  :  L  H  C  W  V  D  W  F  F  D  V  H  A  Y  A  W  K  Q  C  G  F  Y  A  V  R  W  T  Q  S  T  Y  *  :  G  S  C  W  A  A  K  A  I  G  S  C  Y  F  G  H  D  F  *  S  V  E  W  :  D  P  S  P  R  V  W  I  H  A  P  R  V  D  T  H  A  S  R  I  F  H  L  Q  D  C  N  F  C  P  S  N  R  G  R  C  I  D  H  W  K  *  V  T  S  L  A  L  V  F  M  I  F  H  Q  P  L  M  K  I  V   : E  E  K  K  V  Q  E  D  V  G  F  E  K  *  A  T  T  S  I  L   : N  L  S  L  D  G  L  N  K  S  M  I  S  S  C  K  F  L  Y  I  L  D  R  A  L  S  F  V  D  N  L  K  F  L  I  P  L  K  V  Y  E  S  F  S  I  K  K  K  K  S  V  N  S  S  S  *  L  R  L  S  G  V  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6520" stop="6457"/>
                    <exon start="6333" stop="6272"/>
                    <exon start="6133" stop="6053"/>
                    <exon start="5954" stop="5863"/>
                    <exon start="5439" stop="5344"/>
                    <exon start="4862" stop="4794"/>
                    <exon start="4405" stop="4267"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDQGANCPFTTCSRTRSRKYSTPTRREQEKWGKAAKAATGGSDVMLREIKRPQGDPKVMAAQSREQYLKLKNKLQLLTVGIGGVGVISAYISYSPEITVSYTAGLIGSLMYMRMLGNSVDSMQSDGPRALIKGAVGQPRLLVPVTLVMIFNRWNGILVPEYGFMHLELIPMLVGFFTYKIATFVQAIEEGVSIIGNKSQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8137" stop="7814"/>
                    <exon start="6662" stop="6613"/>
                    <exon start="6532" stop="6457"/>
                    <exon start="6333" stop="6272"/>
                    <exon start="6133" stop="6127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKMGVLSYCYLPITSTATPISQDSSNNPTPLSIPTQSKQKSVKLSSGVAANGDYAADPPTTTTKLRKYWGEDVDPLTSDDFIWNKEFMGRMKKYIQDPQENAPAAAVKEEISGFLSLNRVMNLDSLEVDLTKELTAPSQPVLEPEVENTQHQHDASRRNGAKLPRLQLGAVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12816" PGL_stop="10735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12816" e_stop="12663"/>
            <exon e_start="11211" e_stop="10735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12816" e_stop="12663" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12662" i_stop="11212" i_length="1451"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="11211" e_stop="10735" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12816" stop="12663"/>
              <exon start="11211" stop="10735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACCCGAGATTTTATTGAACAATTTTTCTCCTTCTTTCCACTCAAAAACTCCATTGAAGCAGCCAAGAGCTTATACTACACAGTAATCAATATATTTGGAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : TGAATCGGAATATTGAGCTTCTTTTTGGATCCAAGAAATGAACTTAGGGAGACTGAAAAATGTGGTAGCTGCTGCAGCGATTGAAGGATTAGCCGAGGTAAGGGCCAAGATATTTGGTCATGTAATTAATCCAACTGGGCAGCGATCTGCTCACAAGGTTTTACGCAAGAAGCTGATCGGTGAAAAGGTCTCACAATGGTACCCACACGATATCATGAAAGATGACCCTCTTGTGATGGCTCGTCAAGAGCAAGAGCGTCTCAGCAAGCTTGAAATGTTGAAACGTCGTGGAAAGGGGCCACCTAAGAAGGGCCAGGGCAAACAGGCTAAGAAACGCAACAAATAGAGATGATAGTCTCACTGGTTTGAAATAAAGGGGTATCTAGGATTACTATTTGCAATTTGATTACTAACTTTTCTCATCAGCCACTTGCTTTCTAGTGAACATCATCTGCATACTCTTCTACAATTTTTTTC</gDNA_template>
            <first_frame> K  T  R  D  F  I  E  Q  F  F  S  F  F  P  L  K  N  S  I  E  A  A  K  S  L  Y  Y  T  V  I  N  I  F  G  S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : V  N  R  N  I  E  L  L  F  G  S  K  K  *  T  *  G  D  *  K  M  W  *  L  L  Q  R  L  K  D  *  P  R  *  G  P  R  Y  L  V  M  *  L  I  Q  L  G  S  D  L  L  T  R  F  Y  A  R  S  *  S  V  K  R  S  H  N  G  T  H  T  I  S  *  K  M  T  L  L  *  W  L  V  K  S  K  S  V  S  A  S  L  K  C  *  N  V  V  E  R  G  H  L  R  R  A  R  A  N  R  L  R  N  A  T  N  R  D  D  S  L  T  G  L  K  *  R  G  I  *  D  Y  Y  L  Q  F  D  Y  *  L  F  S  S  A  T  C  F  L  V  N  I  I  C  I  L  F  Y  N  F  F  </first_frame>
            <second_frame>  R  P  E  I  L  L  N  N  F  S  P  S  F  H  S  K  T  P  L  K  Q  P  R  A  Y  T  T  Q  *  S  I  Y  L  E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  *  I  G  I  L  S  F  F  L  D  P  R  N  E  L  R  E  T  E  K  C  G  S  C  C  S  D  *  R  I  S  R  G  K  G  Q  D  I  W  S  C  N  *  S  N  W  A  A  I  C  S  Q  G  F  T  Q  E  A  D  R  *  K  G  L  T  M  V  P  T  R  Y  H  E  R  *  P  S  C  D  G  S  S  R  A  R  A  S  Q  Q  A  *  N  V  E  T  S  W  K  G  A  T  *  E  G  P  G  Q  T  G  *  E  T  Q  Q  I  E  M  I  V  S  L  V  *  N  K  G  V  S  R  I  T  I  C  N  L  I  T  N  F  S  H  Q  P  L  A  F  *  *  T  S  S  A  Y  S  S  T  I  F  F </second_frame>
            <third_frame>   D  P  R  F  Y  *  T  I  F  L  L  L  S  T  Q  K  L  H  *  S  S  Q  E  L  I  L  H  S  N  Q  Y  I  W  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  S :   E  S  E  Y  *  A  S  F  W  I  Q  E  M  N  L  G  R  L  K  N  V  V  A  A  A  A  I  E  G  L  A  E  V  R  A  K  I  F  G  H  V  I  N  P  T  G  Q  R  S  A  H  K  V  L  R  K  K  L  I  G  E  K  V  S  Q  W  Y  P  H  D  I  M  K  D  D  P  L  V  M  A  R  Q  E  Q  E  R  L  S  K  L  E  M  L  K  R  R  G  K  G  P  P  K  K  G  Q  G  K  Q  A  K  K  R  N  K  *  R  *  *  S  H  W  F  E  I  K  G  Y  L  G  L  L  F  A  I  *  L  L  T  F  L  I  S  H  L  L  S  S  E  H  H  L  H  T  L  L  Q  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11195" stop="10866"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASFWIQEMNLGRLKNVVAAAAIEGLAEVRAKIFGHVINPTGQRSAHKVLRKKLIGEKVSQWYPHDIMKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGKQAKKRNK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12816" stop="12663"/>
                    <exon start="11211" stop="11171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTRDFIEQFFSFFPLKNSIEAAKSLYYTVINIFGSGGSSLSQSKAAVCSHQVNRNIELLFGSKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12716" e_stop="12663"/>
            <exon e_start="12028" e_stop="11487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12716" e_stop="12663" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="12662" i_stop="12029" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="12028" e_stop="11487" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12716" stop="12663"/>
              <exon start="12028" stop="11487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTGGCGGATCCAGTCTCTCACAAAGCAAGGCAGCCGTTTGTTCTCATCAAG : GCGATTTAGAAGTTTTTGGGATGATGGAATATACAATGGGAATGAGATTTTGTGATTGAGTCGGGGACTGATGGCGTTATTCAGGAAGCCTTTTCATGATTTTCCTTTTGAGAATTTAGAAGCATGTCTAAGGTTTCAAGCTGAGGTTGTGTCGAGCTTTCTGTTCTGTTTTCCTTTTTAGAGTCTTCCGGTCCATCGTTTGTTTCTATAGTTGGAGAACTTTGTATTCTGGTCATTCCCAGCATACTAATGGAAAAGCATGACCAACGATATCTTGTTGTTCCTGTAAAGCGGAGAATATGCATCTAATTCTTTGTATTTATCTGAGAGCAACTTGTGATATTTTTATCAGAGAAATAGAATGAATGTGATATAGAGGGGACTAATGTGACAATCTGTGTCGACGTTTTGAGTAGGTAATACACAATCTGTGTTGGTTACTTTGATTCTTTTTTTTCTTAAACGGAAGTTTTGTTTGAATTTTGATCATTGTTTGGACCAAATATAAATAGGATGTTATCAATCCGAAATGTGATATAAAC</gDNA_template>
            <first_frame> E  V  A  D  P  V  S  H  K  A  R  Q  P  F  V  L  I  K  :  A  I  *  K  F  L  G  *  W  N  I  Q  W  E  *  D  F  V  I  E  S  G  T  D  G  V  I  Q  E  A  F  S  *  F  S  F  *  E  F  R  S  M  S  K  V  S  S  *  G  C  V  E  L  S  V  L  F  S  F  L  E  S  S  G  P  S  F  V  S  I  V  G  E  L  C  I  L  V  I  P  S  I  L  M  E  K  H  D  Q  R  Y  L  V  V  P  V  K  R  R  I  C  I  *  F  F  V  F  I  *  E  Q  L  V  I  F  L  S  E  K  *  N  E  C  D  I  E  G  T  N  V  T  I  C  V  D  V  L  S  R  *  Y  T  I  C  V  G  Y  F  D  S  F  F  S  *  T  E  V  L  F  E  F  *  S  L  F  G  P  N  I  N  R  M  L  S  I  R  N  V  I  *   </first_frame>
            <second_frame>  K  W  R  I  Q  S  L  T  K  Q  G  S  R  L  F  S  S  R :   R  F  R  S  F  W  D  D  G  I  Y  N  G  N  E  I  L  *  L  S  R  G  L  M  A  L  F  R  K  P  F  H  D  F  P  F  E  N  L  E  A  C  L  R  F  Q  A  E  V  V  S  S  F  L  F  C  F  P  F  *  S  L  P  V  H  R  L  F  L  *  L  E  N  F  V  F  W  S  F  P  A  Y  *  W  K  S  M  T  N  D  I  L  L  F  L  *  S  G  E  Y  A  S  N  S  L  Y  L  S  E  S  N  L  *  Y  F  Y  Q  R  N  R  M  N  V  I  *  R  G  L  M  *  Q  S  V  S  T  F  *  V  G  N  T  Q  S  V  L  V  T  L  I  L  F  F  L  K  R  K  F  C  L  N  F  D  H  C  L  D  Q  I  *  I  G  C  Y  Q  S  E  M  *  Y  K  </second_frame>
            <third_frame>   S  G  G  S  S  L  S  Q  S  K  A  A  V  C  S  H  Q   : G  D  L  E  V  F  G  M  M  E  Y  T  M  G  M  R  F  C  D  *  V  G  D  *  W  R  Y  S  G  S  L  F  M  I  F  L  L  R  I  *  K  H  V  *  G  F  K  L  R  L  C  R  A  F  C  S  V  F  L  F  R  V  F  R  S  I  V  C  F  Y  S  W  R  T  L  Y  S  G  H  S  Q  H  T  N  G  K  A  *  P  T  I  S  C  C  S  C  K  A  E  N  M  H  L  I  L  C  I  Y  L  R  A  T  C  D  I  F  I  R  E  I  E  *  M  *  Y  R  G  D  *  C  D  N  L  C  R  R  F  E  *  V  I  H  N  L  C  W  L  L  *  F  F  F  F  L  N  G  S  F  V  *  I  L  I  I  V  W  T  K  Y  K  *  D  V  I  N  P  K  C  D  I  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0076O09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14571" PGL_stop="13898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14571" e_stop="13898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="14571" e_stop="13898" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14571" stop="13898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327005" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATTGCAGTTACAATTTTCAAGTCAGCTACTTTAGTTTTTGATCAAATCTGGCTTAATCTTCTCAAGGTTGTTTCTTCCAATTTTCCAGGTTAGCTACTTCTTCAATTCTCCGTCTAACATTTTTTTTTTGAATGTTGTCTGATCCGTGTCTATCTATTTTGGGAGAGCTAGCTCAGATACGAGGGAAACATTCCTATATTCCTTACTGCCATCTTTATATGTAAAAGGATATCTTTCTTGACGTTTGGTTATGATAAATATATTTCTCTAAGTTCTTTTGTTGCAATTTTTGCATTGAAATCAATCTTCTCTTAGGAGTTGGAATTGGAAGTGACCAAGCATATGCGACTCATACCCTATCGCTCTGCTAAGTAGGGCTCTTAACAAAAGGAAGGTAAAATCGATATTGGTTGTCAATTAGAACAGCAAGTCCAAACTTTTATTGTTTTAGGTATATTGGCTCCCTGACAGTACCACAGGATGTTATCTGGAATATTAATAGAAAGGAAATTAACTATTAAGGCCAATTTTTGTTAATGAAAATGAAATATGCAACCATTTCCATTTGAAGTAAATTTTGCTTTTTAGTTTTACAGGTGAAAGCCAAATGAAACTGATCCCAGATGCTGTTCATGACGCGAGTTGCTGCCAAATTTGTAAGTGTTTTTTT</gDNA_template>
            <first_frame> F  N  C  S  Y  N  F  Q  V  S  Y  F  S  F  *  S  N  L  A  *  S  S  Q  G  C  F  F  Q  F  S  R  L  A  T  S  S  I  L  R  L  T  F  F  F  *  M  L  S  D  P  C  L  S  I  L  G  E  L  A  Q  I  R  G  K  H  S  Y  I  P  Y  C  H  L  Y  M  *  K  D  I  F  L  D  V  W  L  *  *  I  Y  F  S  K  F  F  C  C  N  F  C  I  E  I  N  L  L  L  G  V  G  I  G  S  D  Q  A  Y  A  T  H  T  L  S  L  C  *  V  G  L  L  T  K  G  R  *  N  R  Y  W  L  S  I  R  T  A  S  P  N  F  Y  C  F  R  Y  I  G  S  L  T  V  P  Q  D  V  I  W  N  I  N  R  K  E  I  N  Y  *  G  Q  F  L  L  M  K  M  K  Y  A  T  I  S  I  *  S  K  F  C  F  L  V  L  Q  V  K  A  K  *  N  *  S  Q  M  L  F  M  T  R  V  A  A  K  F  V  S  V  F   </first_frame>
            <second_frame>  L  I  A  V  T  I  F  K  S  A  T  L  V  F  D  Q  I  W  L  N  L  L  K  V  V  S  S  N  F  P  G  *  L  L  L  Q  F  S  V  *  H  F  F  F  E  C  C  L  I  R  V  Y  L  F  W  E  S  *  L  R  Y  E  G  N  I  P  I  F  L  T  A  I  F  I  C  K  R  I  S  F  L  T  F  G  Y  D  K  Y  I  S  L  S  S  F  V  A  I  F  A  L  K  S  I  F  S  *  E  L  E  L  E  V  T  K  H  M  R  L  I  P  Y  R  S  A  K  *  G  S  *  Q  K  E  G  K  I  D  I  G  C  Q  L  E  Q  Q  V  Q  T  F  I  V  L  G  I  L  A  P  *  Q  Y  H  R  M  L  S  G  I  L  I  E  R  K  L  T  I  K  A  N  F  C  *  *  K  *  N  M  Q  P  F  P  F  E  V  N  F  A  F  *  F  Y  R  *  K  P  N  E  T  D  P  R  C  C  S  *  R  E  L  L  P  N  L  *  V  F  F  </second_frame>
            <third_frame>   *  L  Q  L  Q  F  S  S  Q  L  L  *  F  L  I  K  S  G  L  I  F  S  R  L  F  L  P  I  F  Q  V  S  Y  F  F  N  S  P  S  N  I  F  F  L  N  V  V  *  S  V  S  I  Y  F  G  R  A  S  S  D  T  R  E  T  F  L  Y  S  L  L  P  S  L  Y  V  K  G  Y  L  S  *  R  L  V  M  I  N  I  F  L  *  V  L  L  L  Q  F  L  H  *  N  Q  S  S  L  R  S  W  N  W  K  *  P  S  I  C  D  S  Y  P  I  A  L  L  S  R  A  L  N  K  R  K  V  K  S  I  L  V  V  N  *  N  S  K  S  K  L  L  L  F  *  V  Y  W  L  P  D  S  T  T  G  C  Y  L  E  Y  *  *  K  G  N  *  L  L  R  P  I  F  V  N  E  N  E  I  C  N  H  F  H  L  K  *  I  L  L  F  S  F  T  G  E  S  Q  M  K  L  I  P  D  A  V  H  D  A  S  C  C  Q  I  C  K  C  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C07HBa0076O09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23467" PGL_stop="22704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23467" e_stop="22704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="23467" e_stop="22704" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23467" stop="22704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATTTGCAGAAATTCAGCTCCAGTGAAGAGATCCGTCGCCGGTGAGAAATGTCGGATTATTTGCCTCAAGAATTATTGGTTGATATCTTCACAAAACTACCAGTCAAATCAATCCTCCGATGCAGAAGTGTTTGCAAGTCATGGTATTCTCTTCTTACTAGCCCTAGCTTTACCTTCACACATCTCAATCGAAAACGAGATGATCATATGCTGATTAGGAATTATGGTAGAAGCACTCGATTAGATATGTATCCTTTGTTTGGTAACAATGAGAGGTTGGATCCCGACCATTTCTTAGATTTTTCATTTCGTAGAGGTTCCGTTAGTATAGTGGGTAGTGTTAATGGTATTTTGTGCCTCGCCGACACCGACACCGACGCCGACACCGACACCGACGCCGACGCCGATACCGATGCCGACGCCGACTCCGCCATCTTGACCCATTTATATTTTTGTAACCTATCCATCAGAAAGTCGGTAAAACTCCCTGAACCAGTTCGTAGTACCTATCGTTTCACACTGGGGTTTGGGTTTGATTCGGTTACTAATGACTACAAGGTGGTAAGAGTAGTACACGCTATGGGACAATCAAAGCCACATGCTGATCTTTATAAGTTAAGTACTGGTGTTTGGGAAGACATTTCCAATGTCCCTGAGCCTTACATATTAATTTCCATTGAGCCACAGGGCCCACAGGTGTATGTGAACGGCGCTTGTCATTGGATTACTACTAAATTGGAGTTTACACCAGCTCGGAGGAAT</gDNA_template>
            <first_frame> L  I  C  R  N  S  A  P  V  K  R  S  V  A  G  E  K  C  R  I  I  C  L  K  N  Y  W  L  I  S  S  Q  N  Y  Q  S  N  Q  S  S  D  A  E  V  F  A  S  H  G  I  L  F  L  L  A  L  A  L  P  S  H  I  S  I  E  N  E  M  I  I  C  *  L  G  I  M  V  E  A  L  D  *  I  C  I  L  C  L  V  T  M  R  G  W  I  P  T  I  S  *  I  F  H  F  V  E  V  P  L  V  *  W  V  V  L  M  V  F  C  A  S  P  T  P  T  P  T  P  T  P  T  P  T  P  T  P  I  P  M  P  T  P  T  P  P  S  *  P  I  Y  I  F  V  T  Y  P  S  E  S  R  *  N  S  L  N  Q  F  V  V  P  I  V  S  H  W  G  L  G  L  I  R  L  L  M  T  T  R  W  *  E  *  Y  T  L  W  D  N  Q  S  H  M  L  I  F  I  S  *  V  L  V  F  G  K  T  F  P  M  S  L  S  L  T  Y  *  F  P  L  S  H  R  A  H  R  C  M  *  T  A  L  V  I  G  L  L  L  N  W  S  L  H  Q  L  G  G   </first_frame>
            <second_frame>  *  F  A  E  I  Q  L  Q  *  R  D  P  S  P  V  R  N  V  G  L  F  A  S  R  I  I  G  *  Y  L  H  K  T  T  S  Q  I  N  P  P  M  Q  K  C  L  Q  V  M  V  F  S  S  Y  *  P  *  L  Y  L  H  T  S  Q  S  K  T  R  *  S  Y  A  D  *  E  L  W  *  K  H  S  I  R  Y  V  S  F  V  W  *  Q  *  E  V  G  S  R  P  F  L  R  F  F  I  S  *  R  F  R  *  Y  S  G  *  C  *  W  Y  F  V  P  R  R  H  R  H  R  R  R  H  R  H  R  R  R  R  R  Y  R  C  R  R  R  L  R  H  L  D  P  F  I  F  L  *  P  I  H  Q  K  V  G  K  T  P  *  T  S  S  *  Y  L  S  F  H  T  G  V  W  V  *  F  G  Y  *  *  L  Q  G  G  K  S  S  T  R  Y  G  T  I  K  A  T  C  *  S  L  *  V  K  Y  W  C  L  G  R  H  F  Q  C  P  *  A  L  H  I  N  F  H  *  A  T  G  P  T  G  V  C  E  R  R  L  S  L  D  Y  Y  *  I  G  V  Y  T  S  S  E  E  </second_frame>
            <third_frame>   N  L  Q  K  F  S  S  S  E  E  I  R  R  R  *  E  M  S  D  Y  L  P  Q  E  L  L  V  D  I  F  T  K  L  P  V  K  S  I  L  R  C  R  S  V  C  K  S  W  Y  S  L  L  T  S  P  S  F  T  F  T  H  L  N  R  K  R  D  D  H  M  L  I  R  N  Y  G  R  S  T  R  L  D  M  Y  P  L  F  G  N  N  E  R  L  D  P  D  H  F  L  D  F  S  F  R  R  G  S  V  S  I  V  G  S  V  N  G  I  L  C  L  A  D  T  D  T  D  A  D  T  D  T  D  A  D  A  D  T  D  A  D  A  D  S  A  I  L  T  H  L  Y  F  C  N  L  S  I  R  K  S  V  K  L  P  E  P  V  R  S  T  Y  R  F  T  L  G  F  G  F  D  S  V  T  N  D  Y  K  V  V  R  V  V  H  A  M  G  Q  S  K  P  H  A  D  L  Y  K  L  S  T  G  V  W  E  D  I  S  N  V  P  E  P  Y  I  L  I  S  I  E  P  Q  G  P  Q  V  Y  V  N  G  A  C  H  W  I  T  T  K  L  E  F  T  P  A  R  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23420" stop="22704"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMSDYLPQELLVDIFTKLPVKSILRCRSVCKSWYSLLTSPSFTFTHLNRKRDDHMLIRNYGRSTRLDMYPLFGNNERLDPDHFLDFSFRRGSVSIVGSVNGILCLADTDTDADTDTDADADTDADADSAILTHLYFCNLSIRKSVKLPEPVRSTYRFTLGFGFDSVTNDYKVVRVVHAMGQSKPHADLYKLSTGVWEDISNVPEPYILISIEPQGPQVYVNGACHWITTKLEFTPARRN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="33566" PGL_stop="34748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33566" e_stop="33622"/>
            <exon e_start="33746" e_stop="33821"/>
            <exon e_start="34270" e_stop="34748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.789"/>
          <exon-intron don_prob="0.894" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.789">
            <gDNA_exon_boundary e_start="33566" e_stop="33622" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33623" i_stop="33745" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33746" e_stop="33821" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.894" acc_prob="0.993">
            <gDNA_intron_boundary i_start="33822" i_stop="34269" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="34270" e_stop="34748" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33566" stop="33622"/>
              <exon start="33746" stop="33821"/>
              <exon start="34270" stop="34748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCAGAAAAAGAAACATTTCTAAAGTTCATTAGCAAGAGCTTGAAGATGACAACG : ATGACAGAGATGAGAGTACACATGGATTGTGCCGGATGTGAGAGCAAGGTCAGAAAATCTCTCGAGAAAGTTAAAG : GTGTTGATAATGTAGAAATAGATATGTCTATGCAAAAGGTGACAGTAACAGGATGGGCTGATCAAAAGAAAATACTCAAAACAGTTAGAAGAACTGGTAAAAGAGCTGAAATATGGCAATTTCCTCATAATCCTGAGATGAGAAATAACCCTACTTATGTAACCGATCATTATTATCAACAACAAGGCTGCAGTGGTCCGACCACTTATTATGCCGGAGAACCACCGGCTTCCTCCTATAACTATCGCAAACACGGCTACGATAACTATGGCCGTGCCTATAGTCTTTACAGGGGCAATTCAAACACATTTGGTAGTCGTGTTGGTGATGCTTTTAGTGATGAGAATCCTCGTGGTTGTAATATTATGTAATTGTTGTTTGATGTTGTCGATTATTAAATGTAAGAGCCTGTTTGAATTGACTTCTTTAAAAAAATGTATAATACATAAATATGACTTTAATTTGACGTCAGTTGATAA</gDNA_template>
            <first_frame> E  A  E  K  E  T  F  L  K  F  I  S  K  S  L  K  M  T  T  :  M  T  E  M  R  V  H  M  D  C  A  G  C  E  S  K  V  R  K  S  L  E  K  V  K   : G  V  D  N  V  E  I  D  M  S  M  Q  K  V  T  V  T  G  W  A  D  Q  K  K  I  L  K  T  V  R  R  T  G  K  R  A  E  I  W  Q  F  P  H  N  P  E  M  R  N  N  P  T  Y  V  T  D  H  Y  Y  Q  Q  Q  G  C  S  G  P  T  T  Y  Y  A  G  E  P  P  A  S  S  Y  N  Y  R  K  H  G  Y  D  N  Y  G  R  A  Y  S  L  Y  R  G  N  S  N  T  F  G  S  R  V  G  D  A  F  S  D  E  N  P  R  G  C  N  I  M  *  L  L  F  D  V  V  D  Y  *  M  *  E  P  V  *  I  D  F  F  K  K  M  Y  N  T  *  I  *  L  *  F  D  V  S  *  * </first_frame>
            <second_frame>  K  Q  K  K  K  H  F  *  S  S  L  A  R  A  *  R  *  Q  R :   *  Q  R  *  E  Y  T  W  I  V  P  D  V  R  A  R  S  E  N  L  S  R  K  L  K  :  V  L  I  M  *  K  *  I  C  L  C  K  R  *  Q  *  Q  D  G  L  I  K  R  K  Y  S  K  Q  L  E  E  L  V  K  E  L  K  Y  G  N  F  L  I  I  L  R  *  E  I  T  L  L  M  *  P  I  I  I  I  N  N  K  A  A  V  V  R  P  L  I  M  P  E  N  H  R  L  P  P  I  T  I  A  N  T  A  T  I  T  M  A  V  P  I  V  F  T  G  A  I  Q  T  H  L  V  V  V  L  V  M  L  L  V  M  R  I  L  V  V  V  I  L  C  N  C  C  L  M  L  S  I  I  K  C  K  S  L  F  E  L  T  S  L  K  K  C  I  I  H  K  Y  D  F  N  L  T  S  V  D   </second_frame>
            <third_frame>   S  R  K  R  N  I  S  K  V  H  *  Q  E  L  E  D  D  N   : D  D  R  D  E  S  T  H  G  L  C  R  M  *  E  Q  G  Q  K  I  S  R  E  S  *  R :   C  *  *  C  R  N  R  Y  V  Y  A  K  G  D  S  N  R  M  G  *  S  K  E  N  T  Q  N  S  *  K  N  W  *  K  S  *  N  M  A  I  S  S  *  S  *  D  E  K  *  P  Y  L  C  N  R  S  L  L  S  T  T  R  L  Q  W  S  D  H  L  L  C  R  R  T  T  G  F  L  L  *  L  S  Q  T  R  L  R  *  L  W  P  C  L  *  S  L  Q  G  Q  F  K  H  I  W  *  S  C  W  *  C  F  *  *  *  E  S  S  W  L  *  Y  Y  V  I  V  V  *  C  C  R  L  L  N  V  R  A  C  L  N  *  L  L  *  K  N  V  *  Y  I  N  M  T  L  I  *  R  Q  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C07HBa0076O09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33566" stop="33622"/>
                    <exon start="33746" stop="33821"/>
                    <exon start="34270" stop="34640"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAEKETFLKFISKSLKMTTMTEMRVHMDCAGCESKVRKSLEKVKGVDNVEIDMSMQKVTVTGWADQKKILKTVRRTGKRAEIWQFPHNPEMRNNPTYVTDHYYQQQGCSGPTTYYAGEPPASSYNYRKHGYDNYGRAYSLYRGNSNTFGSRVGDAFSDENPRGCNIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 17280 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2160 bytes was the average size of a spliced alignment
$ 11360 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2272 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 18 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 00:08:30
-->
